v0.8.19
Core.cpp
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1 /** \file Core.cpp
2  * \brief Multi-index containers, data structures and other low-level functions
3  */
4 
5 /* MoFEM is free software: you can redistribute it and/or modify it under
6  * the terms of the GNU Lesser General Public License as published by the
7  * Free Software Foundation, either version 3 of the License, or (at your
8  * option) any later version.
9  *
10  * MoFEM is distributed in the hope that it will be useful, but WITHOUT
11  * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
12  * FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public
13  * License for more details.
14  *
15  * You should have received a copy of the GNU Lesser General Public
16  * License along with MoFEM. If not, see <http://www.gnu.org/licenses/>
17  */
18 
19 extern "C" {
21 }
22 
23 namespace MoFEM {
24 
26  UnknownInterface **iface) const {
28  *iface = NULL;
29  if (uuid == IDD_MOFEMCoreInterface) {
30  *iface = static_cast<CoreInterface *>(const_cast<Core *>(this));
32  } else if (uuid == IDD_MOFEMDeprecatedCoreInterface) {
33  *iface = static_cast<DeprecatedCoreInterface *>(const_cast<Core *>(this));
35  }
36  // Get sub-interface
37  unsigned long int id = uuid.uUId.to_ulong();
38  boost::ptr_map<unsigned long, UnknownInterface>::iterator it;
39  it = iFaces.find(id);
40  if (it != iFaces.end()) {
41  *iface = it->second;
43  }
44  *iface = NULL;
45  SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY, "unknown interface");
47 }
48 
49 bool Core::isGloballyInitialised = false;
50 
51 MoFEMErrorCode Core::Initialize(int *argc, char ***args, const char file[],
52  const char help[]) {
53  ierr = PetscInitialize(argc, args, file, help);
54  CHKERRG(ierr);
55  ierr = PetscPushErrorHandler(mofem_error_handler, PETSC_NULL);
56  CHKERRG(ierr);
57  isGloballyInitialised = true;
58  return MOFEM_SUCCESS;
59 }
60 
62  CHKERRQ(ierr);
63  ierr = PetscPopErrorHandler();
64  CHKERRG(ierr);
65  isGloballyInitialised = false;
66  return PetscFinalize();
67 }
68 
69 template <class IFACE>
72  CHKERR registerInterface<IFACE>(uid, false);
73  unsigned long int id = uid.uUId.to_ulong();
74  iFaces.insert(id, new IFACE(*this));
76 }
77 
78 Core::Core(moab::Interface &moab, MPI_Comm comm, const int verbose,
79  const bool distributed_mesh)
80  : moab(moab), cOmm(0), verbose(verbose),
81  initaliseAndBuildField(PETSC_FALSE),
82  initaliseAndBuildFiniteElements(PETSC_FALSE) {
83 
84  // This is deprecated ONE should use MoFEM::Core::Initialize
85  if (!isGloballyInitialised) {
86  PetscPushErrorHandler(mofem_error_handler, PETSC_NULL);
87  isGloballyInitialised = true;
88  }
89 
90  // Register interfaces for this implementation
91  ierr = registerInterface<UnknownInterface>(IDD_MOFEMUnknown);
92  CHKERRABORT(comm, ierr);
93  ierr = registerInterface<CoreInterface>(IDD_MOFEMCoreInterface);
94  CHKERRABORT(comm, ierr);
95  ierr = registerInterface<DeprecatedCoreInterface>(
97  CHKERRABORT(comm, ierr);
98 
99  // Register sub-interfaces
101  CHKERRABORT(PETSC_COMM_SELF, ierr);
102 
103  // Register MOFEM events in PETSc
104  PetscLogEventRegister("FE_preProcess", 0, &MOFEM_EVENT_preProcess);
105  PetscLogEventRegister("FE_operator", 0, &MOFEM_EVENT_operator);
106  PetscLogEventRegister("FE_postProcess", 0, &MOFEM_EVENT_postProcess);
107  PetscLogEventRegister("MoFEMCreateMat", 0, &MOFEM_EVENT_createMat);
108 
109  // Create duplicate communicator
110  wrapMPIComm = boost::make_shared<WrapMPIComm>(comm,cOmm);
111  MPI_Comm_size(cOmm, &sIze);
112  MPI_Comm_rank(cOmm, &rAnk);
113  // CHeck if moab has set communicator if not set communicator interbally
114  ParallelComm *pComm = ParallelComm::get_pcomm(&moab, MYPCOMM_INDEX);
115  if (pComm == NULL) {
116  pComm = new ParallelComm(&moab, cOmm);
117  }
118 
119  // Initialize database
120  ierr = getTags();
121  CHKERRABORT(cOmm, ierr);
122  ierr = clearMap();
123  CHKERRABORT(cOmm, ierr);
124 
125  basicEntityDataPtr = boost::make_shared<BasicEntityData>(moab);
126  if (distributed_mesh)
127  basicEntityDataPtr->setDistributedMesh();
128  else
129  basicEntityDataPtr->unSetDistributedMesh();
130 
132  CHKERRABORT(cOmm, ierr);
134  CHKERRABORT(cOmm, ierr);
135 
136  // Print version
137  if (verbose > QUIET) {
138  char petsc_version[255];
139  ierr = PetscGetVersion(petsc_version, 255);
140  CHKERRABORT(cOmm, ierr);
141  ierr = PetscPrintf(cOmm, "MoFEM version %d.%d.%d (%s %s) \n",
142  MoFEM_VERSION_MAJOR, MoFEM_VERSION_MINOR,
143  MoFEM_VERSION_BUILD, MOAB_VERSION_STRING, petsc_version);
144  CHKERRABORT(cOmm, ierr);
145  ierr = PetscPrintf(cOmm, "git commit id %s\n", GIT_SHA1_NAME);
146  CHKERRABORT(cOmm, ierr);
147  }
148 }
149 
151  PetscBool is_finalized;
152  PetscFinalized(&is_finalized);
153  // Destroy interfaces
154  iFaces.clear();
155  // This is deprecated ONE should use MoFEM::Core::Initialize
156  if (isGloballyInitialised && is_finalized) {
157  isGloballyInitialised = false;
158  }
159 }
160 
163 
164  iFaces.clear();
165 
166  // Register sub interfaces
167  CHKERR regSubInterface<Simple>(IDD_MOFEMSimple);
168  CHKERR regSubInterface<ProblemsManager>(IDD_MOFEMProblemsManager);
169  CHKERR regSubInterface<MatrixManager>(IDD_MOFEMMatrixManager);
170  CHKERR regSubInterface<ISManager>(IDD_MOFEMISManager);
171  CHKERR regSubInterface<VecManager>(IDD_MOFEMVEC);
172  CHKERR regSubInterface<FieldBlas>(IDD_MOFEMFieldBlas);
173  CHKERR regSubInterface<BitRefManager>(IDD_MOFEMBitRefManager);
174  CHKERR regSubInterface<Tools>(IDD_MOFEMTools);
175  CHKERR regSubInterface<MeshsetsManager>(IDD_MOFEMMeshsetsManager);
176  CHKERR regSubInterface<CoordSystemsManager>(IDD_MOFEMCoordsSystemsManager);
177  CHKERR regSubInterface<NodeMergerInterface>(IDD_MOFEMNodeMerger);
178  CHKERR regSubInterface<BitLevelCoupler>(IDD_MOFEMBitLevelCoupler);
179  CHKERR regSubInterface<PrismsFromSurfaceInterface>(
181  CHKERR regSubInterface<MeshRefinement>(IDD_MOFEMMeshRefine);
182  CHKERR regSubInterface<PrismInterface>(IDD_MOFEMPrismInterface);
183  CHKERR regSubInterface<CutMeshInterface>(IDD_MOFEMCutMesh);
184  CHKERR regSubInterface<SeriesRecorder>(IDD_MOFEMSeriesRecorder);
185 #ifdef WITH_TETGEN
186  CHKERR regSubInterface<TetGenInterface>(IDD_MOFEMTetGegInterface);
187 #endif
188 #ifdef WITH_MED
189  CHKERR regSubInterface<MedInterface>(IDD_MOFEMMedInterface);
190 #endif
191 
193 };
194 
196  if (*fShift >= BITFIELDID_SIZE) {
197  char msg[] = "number of fields exceeded";
198  PetscTraceBackErrorHandler(cOmm, __LINE__, PETSC_FUNCTION_NAME, __FILE__,
199  MOFEM_DATA_INCONSISTENCY, PETSC_ERROR_INITIAL,
200  msg, PETSC_NULL);
201  PetscMPIAbortErrorHandler(cOmm, __LINE__, PETSC_FUNCTION_NAME, __FILE__,
202  MOFEM_DATA_INCONSISTENCY, PETSC_ERROR_INITIAL,
203  msg, PETSC_NULL);
204  }
205  return BitFieldId().set(((*fShift)++) - 1);
206 }
208  assert((unsigned int)*feShift < BitFEId().set().to_ulong());
209  return BitFEId(1 << (((*feShift)++) - 1));
210 }
211 
213  assert((unsigned int)*pShift < BitProblemId().set().to_ulong());
214  return BitProblemId(1 << (((*pShift)++) - 1));
215 }
216 
219  // Cleaning databases in interfaces
220  CHKERR getInterface<SeriesRecorder>()->clearMap();
221  CHKERR getInterface<MeshsetsManager>()->clearMap();
222  CHKERR getInterface<CoordSystemsManager>()->clearMap();
223  CHKERR getInterface<CutMeshInterface>()->clearMap();
224  // Cleaning databases
225  refinedEntities.clear();
226  refinedFiniteElements.clear();
227  fIelds.clear();
228  entsFields.clear();
229  dofsField.clear();
230  finiteElements.clear();
231  entsFiniteElements.clear();
232  entFEAdjacencies.clear();
233  pRoblems.clear();
235 }
236 
239  if (verb == -1)
240  verb = verbose;
241  std::pair<RefEntity_multiIndex::iterator, bool> p_ent;
242  p_ent = refinedEntities.insert(
243  boost::make_shared<RefEntity>(basicEntityDataPtr, prism));
244  if (p_ent.second) {
245  std::pair<RefElement_multiIndex::iterator, bool> p;
246  p = refinedFiniteElements.insert(
247  boost::shared_ptr<RefElement>(new RefElement_PRISM(*p_ent.first)));
248  int num_nodes;
249  const EntityHandle *conn;
250  CHKERR get_moab().get_connectivity(prism, conn, num_nodes, true);
251  Range face_side3, face_side4;
252  CHKERR get_moab().get_adjacencies(conn, 3, 2, false, face_side3);
253  CHKERR get_moab().get_adjacencies(&conn[3], 3, 2, false, face_side4);
254  if (face_side3.size() != 1)
255  SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
256  "prism don't have side face 3");
257  if (face_side4.size() != 1)
258  SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
259  "prims don't have side face 4");
260  p.first->get()->getSideNumberPtr(*face_side3.begin());
261  p.first->get()->getSideNumberPtr(*face_side4.begin());
262  }
264 }
265 
268 
269  const EntityHandle root_meshset = get_moab().get_root_set();
270  if (root_meshset) {
271  SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
272  "Root meshset should be 0");
273  }
274 
275  // Set version
276  {
277  Version version;
278  CHKERR getFileVersion(moab, version);
279  }
280 
281  // Global Variables
282  {
283 
284  auto check_tag_allocated = [](auto &rval) {
286  if (rval == MB_ALREADY_ALLOCATED)
287  rval = MB_SUCCESS;
288  else
289  CHKERRG(rval);
291  };
292 
293  // Fields
294  int def_shift = 1;
295  rval = get_moab().tag_get_handle("_FieldShift", 1, MB_TYPE_INTEGER,
296  th_FieldShift, MB_TAG_CREAT | MB_TAG_MESH,
297  &def_shift);
298  CHKERR check_tag_allocated(rval);
299 
300  const void *tag_data[1];
301  CHKERR get_moab().tag_get_by_ptr(th_FieldShift, &root_meshset, 1, tag_data);
302  fShift = (int *)tag_data[0];
303  // FE
304  rval = get_moab().tag_get_handle("_FEShift", 1, MB_TYPE_INTEGER, th_FEShift,
305  MB_TAG_CREAT | MB_TAG_MESH, &def_shift);
306  CHKERR check_tag_allocated(rval);
307 
308  CHKERR get_moab().tag_get_by_ptr(th_FEShift, &root_meshset, 1, tag_data);
309  feShift = (int *)tag_data[0];
310  // Problem
311  rval = get_moab().tag_get_handle("_ProblemShift", 1, MB_TYPE_INTEGER,
313  MB_TAG_CREAT | MB_TAG_MESH, &def_shift);
314  CHKERR check_tag_allocated(rval);
315 
316  CHKERR get_moab().tag_get_by_ptr(th_ProblemShift, &root_meshset, 1,
317  tag_data);
318  pShift = (int *)tag_data[0];
319  // Safety nets
320  int def_bool = 0;
321  rval = get_moab().tag_get_handle("_MoFEMBuild", 1, MB_TYPE_INTEGER,
322  th_MoFEMBuild, MB_TAG_CREAT | MB_TAG_MESH,
323  &def_bool);
324  CHKERR check_tag_allocated(rval);
325 
326  CHKERR get_moab().tag_get_by_ptr(th_MoFEMBuild, &root_meshset, 1,
327  (const void **)&buildMoFEM);
328  }
329 
330  // Tags saved in vtk-files
331  {
332  const int def_part = -1;
333  CHKERR get_moab().tag_get_handle("PARTITION", 1, MB_TYPE_INTEGER, th_Part,
334  MB_TAG_CREAT | MB_TAG_SPARSE, &def_part);
335  int def_elem_type = MBMAXTYPE;
336  CHKERR get_moab().tag_get_handle("ElemType", 1, MB_TYPE_INTEGER,
337  th_ElemType, MB_TAG_CREAT | MB_TAG_SPARSE,
338  &def_elem_type);
339  }
340 
341  // Tags Ref
342  {
343  EntityHandle def_handle = 0;
344  CHKERR get_moab().tag_get_handle("_RefParentHandle", 1, MB_TYPE_HANDLE,
346  MB_TAG_CREAT | MB_TAG_SPARSE, &def_handle);
347  BitRefLevel def_bit_level = 0;
348  CHKERR get_moab().tag_get_handle(
349  "_RefBitLevel", sizeof(BitRefLevel), MB_TYPE_OPAQUE, th_RefBitLevel,
350  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_bit_level);
351  BitRefLevel def_bit_level_mask = BitRefLevel().set();
352  CHKERR get_moab().tag_get_handle(
353  "_RefBitLevelMask", sizeof(BitRefLevel), MB_TYPE_OPAQUE,
354  th_RefBitLevel_Mask, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
355  &def_bit_level_mask);
356  BitRefEdges def_bit_edge = 0;
357  CHKERR get_moab().tag_get_handle(
358  "_RefBitEdge", sizeof(BitRefEdges), MB_TYPE_OPAQUE, th_RefBitEdge,
359  MB_TAG_CREAT | MB_TAG_SPARSE | MB_TAG_BYTES, &def_bit_edge);
360  const int def_type[] = {0, 0};
361  CHKERR get_moab().tag_get_handle("_RefType", 2, MB_TYPE_INTEGER, th_RefType,
362  MB_TAG_CREAT | MB_TAG_SPARSE, def_type);
363  }
364 
365  // Tags Field
366  {
367  const unsigned long int def_id = 0;
368  CHKERR get_moab().tag_get_handle(
369  "_FieldId", sizeof(BitFieldId), MB_TYPE_OPAQUE, th_FieldId,
370  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
371  FieldSpace def_space = LASTSPACE;
372  CHKERR get_moab().tag_get_handle(
373  "_FieldSpace", sizeof(FieldSpace), MB_TYPE_OPAQUE, th_FieldSpace,
374  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_space);
375  FieldApproximationBase def_base = LASTBASE;
376  CHKERR get_moab().tag_get_handle(
377  "_FieldBase", sizeof(FieldApproximationBase), MB_TYPE_OPAQUE,
378  th_FieldBase, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_base);
379  const int def_val_len = 0;
380  CHKERR get_moab().tag_get_handle(
381  "_FieldName", def_val_len, MB_TYPE_OPAQUE, th_FieldName,
382  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_VARLEN | MB_TAG_SPARSE, NULL);
383  CHKERR get_moab().tag_get_handle(
384  "_FieldName_DataNamePrefix", def_val_len, MB_TYPE_OPAQUE,
386  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_VARLEN | MB_TAG_SPARSE, NULL);
387  }
388 
389  // Tags FE
390  {
391  const unsigned long int def_id = 0;
392  const int def_val_len = 0;
393  CHKERR get_moab().tag_get_handle(
394  "_FEId", sizeof(BitFEId), MB_TYPE_OPAQUE, th_FEId,
395  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
396  CHKERR get_moab().tag_get_handle(
397  "_FEName", def_val_len, MB_TYPE_OPAQUE, th_FEName,
398  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_VARLEN | MB_TAG_SPARSE, NULL);
399  CHKERR get_moab().tag_get_handle(
400  "_FEIdCol", sizeof(BitFieldId), MB_TYPE_OPAQUE, th_FEIdCol,
401  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
402  CHKERR get_moab().tag_get_handle(
403  "_FEIdRow", sizeof(BitFieldId), MB_TYPE_OPAQUE, th_FEIdRow,
404  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
405  CHKERR get_moab().tag_get_handle(
406  "_FEIdData", sizeof(BitFieldId), MB_TYPE_OPAQUE, th_FEIdData,
407  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
408  }
409 
410  // Tags Problem
411  {
412  const unsigned long int def_id = 0;
413  const int def_val_len = 0;
414  CHKERR get_moab().tag_get_handle(
415  "_ProblemId", sizeof(BitProblemId), MB_TYPE_OPAQUE, th_ProblemId,
416  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
417  CHKERR get_moab().tag_get_handle(
418  "_ProblemFEId", sizeof(BitFEId), MB_TYPE_OPAQUE, th_ProblemFEId,
419  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
420  CHKERR get_moab().tag_get_handle(
421  "_ProblemName", def_val_len, MB_TYPE_OPAQUE, th_ProblemName,
422  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_VARLEN | MB_TAG_SPARSE, NULL);
423  DofIdx def_nbdofs = 0;
424  CHKERR get_moab().tag_get_handle(
425  "_ProblemNbDofsRow", sizeof(DofIdx), MB_TYPE_OPAQUE,
426  th_ProblemNbDofsRow, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
427  &def_nbdofs);
428  CHKERR get_moab().tag_get_handle(
429  "_ProblemNbDofsCol", sizeof(DofIdx), MB_TYPE_OPAQUE,
430  th_ProblemNbDofsCol, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
431  &def_nbdofs);
432  CHKERR get_moab().tag_get_handle(
433  "_ProblemLocalNbDofsRow", sizeof(DofIdx), MB_TYPE_OPAQUE,
434  th_ProblemLocalNbDofRow, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
435  &def_nbdofs);
436  CHKERR get_moab().tag_get_handle(
437  "_ProblemGhostNbDofsRow", sizeof(DofIdx), MB_TYPE_OPAQUE,
438  th_ProblemGhostNbDofRow, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
439  &def_nbdofs);
440  CHKERR get_moab().tag_get_handle(
441  "_ProblemLocalNbDofsCol", sizeof(DofIdx), MB_TYPE_OPAQUE,
442  th_ProblemLocalNbDofCol, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
443  &def_nbdofs);
444  CHKERR get_moab().tag_get_handle(
445  "_ProblemGhostNbDofsCol", sizeof(DofIdx), MB_TYPE_OPAQUE,
446  th_ProblemGhostNbDofCol, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
447  &def_nbdofs);
448  }
449 
450  // Meshsets with boundary conditions and material sets
451  MeshsetsManager *meshsets_manager_ptr;
452  CHKERR getInterface(meshsets_manager_ptr);
453  CHKERR meshsets_manager_ptr->getTags(verb);
454 
455  // Series recorder
456  SeriesRecorder *series_recorder_ptr;
457  CHKERR getInterface(series_recorder_ptr);
458  CHKERR series_recorder_ptr->getTags(verb);
459 
460  // Coordinate systems
461  CoordSystemsManager *cs_manger_ptr;
462  CHKERR getInterface(cs_manger_ptr);
463  CHKERR cs_manger_ptr->getTags(verb);
464 
466 }
467 
470  if (verb == -1)
471  verb = verbose;
472  CHKERR clearMap();
474 }
475 
478  if (verb == -1)
479  verb = verbose;
480  CHKERR clearMap();
481  CHKERR getTags(verb);
484 }
485 
486 MoFEMErrorCode Core::set_moab_interface(moab::Interface &new_moab, int verb,
487  const bool distributed_mesh) {
489  if (verb == -1)
490  verb = verbose;
491 
492  // clear moab database
493  CHKERR clearMap();
494 
495  // set new reference
496  moab = std::ref(new_moab);
497 
498  // check if moab has set communicator if not set communicator internally
499  ParallelComm *pComm = ParallelComm::get_pcomm(&new_moab, MYPCOMM_INDEX);
500  if (pComm == NULL) {
501  pComm = new ParallelComm(&new_moab, cOmm);
502  }
503 
504  // create MoFEM tags
505  CHKERR getTags();
506 
507  // Create basic entity data struture
508  basicEntityDataPtr = boost::make_shared<BasicEntityData>(moab);
509  if (distributed_mesh)
510  basicEntityDataPtr->setDistributedMesh();
511  else
512  basicEntityDataPtr->unSetDistributedMesh();
513 
514  // Initalise database
516 
518 };
519 
522  if (verb == -1)
523  verb = verbose;
524 
525  CHKERR PetscOptionsBegin(cOmm, optionsPrefix.c_str(), "Mesh cut options",
526  "See MoFEM documentation");
527 
528  CHKERR PetscOptionsBool(
529  "-mofem_init_fields", "Initialise fields on construction", "",
531 
532  CHKERR PetscOptionsBool(
533  "-mofem_init_fields", "Initialise fields on construction", "",
535 
536  // TODO: Add read verbosity level
537  // TODO: Add option to initalise problems ??? - DO WE REALLY NEED THAT
538 
539  ierr = PetscOptionsEnd();
540  CHKERRG(ierr);
541 
543 }
544 
547  if (verb == -1)
548  verb = verbose;
549 
550  CoordSystemsManager *cs_manger_ptr;
551  CHKERR getInterface(cs_manger_ptr);
552 
553  // Initialize coordinate systems
554  CHKERR cs_manger_ptr->initialiseDatabaseFromMesh(verb);
555 
556  Range ref_elems_to_add;
557 
558  // Initialize database
559  Range meshsets;
560  CHKERR get_moab().get_entities_by_type(0, MBENTITYSET, meshsets, false);
561  Range special_meshsets;
562  for (Range::iterator mit = meshsets.begin(); mit != meshsets.end(); mit++) {
563  BitFieldId field_id;
564  // Get bit id form field tag
565  CHKERR get_moab().tag_get_data(th_FieldId, &*mit, 1, &field_id);
566  // Check if meshset if field meshset
567  if (field_id != 0) {
568  std::pair<Field_multiIndex::iterator, bool> p;
569  const char *cs_name;
570  int cs_name_size;
571  boost::shared_ptr<CoordSys> cs_ptr;
572  rval =
573  get_moab().tag_get_by_ptr(cs_manger_ptr->get_th_CoordSysName(), &*mit,
574  1, (const void **)&cs_name, &cs_name_size);
575  if (rval == MB_SUCCESS && cs_name_size) {
576  CHKERR cs_manger_ptr->getCoordSysPtr(std::string(cs_name, cs_name_size),
577  cs_ptr);
578  } else {
579  CHKERR cs_manger_ptr->getCoordSysPtr("UNDEFINED", cs_ptr);
580  }
581  p = fIelds.insert(
582  boost::shared_ptr<Field>(new Field(moab, *mit, cs_ptr)));
583  if (verb >= VERBOSE) {
584  std::ostringstream ss;
585  ss << "read field " << **p.first << std::endl;
586  PetscPrintf(cOmm, ss.str().c_str());
587  }
588  special_meshsets.insert(*mit);
589  }
590  // Check for finite elements
591  BitFieldId fe_id;
592  // Get bit id from fe tag
593  CHKERR get_moab().tag_get_data(th_FEId, &*mit, 1, &fe_id);
594  // check if meshset is finite element meshset
595  if (fe_id != 0) {
596  std::pair<FiniteElement_multiIndex::iterator, bool> p =
597  finiteElements.insert(
598  boost::shared_ptr<FiniteElement>(new FiniteElement(moab, *mit)));
599  if (verb >= VERBOSE) {
600  std::ostringstream ss;
601  ss << "read finite element " << **p.first << std::endl;
602  PetscPrintf(cOmm, ss.str().c_str());
603  }
604  NOT_USED(p);
605  Range ents;
606  CHKERR get_moab().get_entities_by_type(*mit, MBENTITYSET, ents, false);
607  CHKERR get_moab().get_entities_by_handle(*mit, ents, true);
608  ref_elems_to_add.merge(ents);
609  special_meshsets.insert(*mit);
610  }
611  BitProblemId problem_id;
612  // get bit id form problem tag
613  CHKERR get_moab().tag_get_data(th_ProblemId, &*mit, 1, &problem_id);
614  // check if meshset if problem meshset
615  if (problem_id != 0) {
616  std::pair<Problem_multiIndex::iterator, bool> p =
617  pRoblems.insert(Problem(moab, *mit));
618  if (verb >= VERBOSE) {
619  std::ostringstream ss;
620  ss << "read problem " << *p.first << " bit ref "
621  << p.first->getBitRefLevel() << " bit mask "
622  << p.first->getMaskBitRefLevel() << std::endl;
623  PetscPrintf(cOmm, ss.str().c_str());
624  }
625  special_meshsets.insert(*mit);
626  }
627  }
628 
629  // Add entities to database
630  Range bit_ref_ents;
631  CHKERR get_moab().get_entities_by_handle(0, bit_ref_ents, false);
632  bit_ref_ents = subtract(bit_ref_ents, special_meshsets);
633  CHKERR getInterface<BitRefManager>()->filterEntitiesByRefLevel(
634  BitRefLevel().set(), BitRefLevel().set(), bit_ref_ents);
635  CHKERR getInterface<BitRefManager>()->setEntitiesBitRefLevel(bit_ref_ents);
636  CHKERR getInterface<BitRefManager>()->setElementsBitRefLevel(
637  ref_elems_to_add);
638 
639  // Build field entities
640  for (Field_multiIndex::iterator fit = fIelds.begin(); fit != fIelds.end();
641  ++fit) {
642  Range ents_of_id_meshset;
643  CHKERR get_moab().get_entities_by_handle(fit->get()->getMeshset(),
644  ents_of_id_meshset, false);
645  CHKERR set_field_order(ents_of_id_meshset, fit->get()->getId(), -1);
646  }
647 
649  CHKERR build_fields(verb);
652  }
653  }
654 
655  if (verb > VERY_NOISY) {
656  list_fields();
658  list_problem();
659  }
660 
661  // Initialize interfaces
662  MeshsetsManager *m_manger_ptr;
663  CHKERR getInterface(m_manger_ptr);
664  CHKERR m_manger_ptr->initialiseDatabaseFromMesh(verb);
665  SeriesRecorder *series_recorder_ptr;
666  CHKERR getInterface(series_recorder_ptr);
667  CHKERR series_recorder_ptr->initialiseDatabaseFromMesh(verb);
668 
670 }
671 
672 // cubit meshsets
673 
676  *fields_ptr = &fIelds;
678 }
679 
681 Core::get_ref_ents(const RefEntity_multiIndex **refined_entities_ptr) const {
683  *refined_entities_ptr = &refinedEntities;
685 }
687  const RefElement_multiIndex **refined_finite_elements_ptr) const {
689  *refined_finite_elements_ptr = &refinedFiniteElements;
691 }
692 
693 MoFEMErrorCode Core::get_problem(const std::string &problem_name,
694  const Problem **problem_ptr) const {
696  typedef Problem_multiIndex::index<Problem_mi_tag>::type ProblemsByName;
697  const ProblemsByName &problems = pRoblems.get<Problem_mi_tag>();
698  ProblemsByName::iterator p_miit = problems.find(problem_name);
699  if (p_miit == problems.end()) {
700  SETERRQ1(PETSC_COMM_SELF, MOFEM_OPERATION_UNSUCCESSFUL,
701  "problem < %s > not found, (top tip: check spelling)",
702  problem_name.c_str());
703  }
704  *problem_ptr = &*p_miit;
706 }
707 
709 Core::get_problems(const Problem_multiIndex **problems_ptr) const {
711  *problems_ptr = &pRoblems;
713 }
714 
716 Core::get_field_ents(const FieldEntity_multiIndex **field_ents) const {
718  *field_ents = &entsFields;
720 }
723  *dofs_ptr = &dofsField;
725 }
726 
728  MeshsetsManager *meshsets_manager_ptr;
729  getInterface(meshsets_manager_ptr);
730  return meshsets_manager_ptr;
731 }
732 
734  MeshsetsManager *meshsets_manager_ptr;
735  getInterface(meshsets_manager_ptr);
736  return meshsets_manager_ptr;
737 }
738 
739 } // namespace MoFEM
MoFEMErrorCode initialiseDatabaseFromMesh(int verb=0)
Tag th_ProblemNbDofsCol
Definition: Core.hpp:209
static const MOFEMuuid IDD_MOFEMSeriesRecorder
DofEntity_multiIndex dofsField
dofs on fields
Definition: Core.hpp:249
MoFEMErrorCode clearMap()
Cleaning database.
Definition: Core.cpp:217
static const MOFEMuuid IDD_MOFEMCoreInterface
Definition: Interface.hpp:24
Tag th_FieldSpace
Definition: Core.hpp:204
Deprecated interface functions.
MoFEM interface unique ID.
int sIze
MoFEM communicator size.
Definition: Core.hpp:848
MoFEMErrorCode initialiseDatabaseFromMesh(int verb=DEFAULT_VERBOSITY)
Initialize database getting information on mesh.
Definition: Core.cpp:545
Tag th_FieldName_DataNamePrefix
Definition: Core.hpp:204
static const MOFEMuuid IDD_MOFEMMeshsetsManager
PetscLogEvent MOFEM_EVENT_postProcess
Event for postProcess finite element.
Definition: Core.hpp:836
boost::shared_ptr< WrapMPIComm > wrapMPIComm
Definition: Core.hpp:884
PetscErrorCode MoFEMErrorCode
MoFEM/PETSc error code.
Definition: Common.hpp:60
static const MOFEMuuid IDD_MOFEMProblemsManager
multi_index_container< boost::shared_ptr< RefElement >, indexed_by< ordered_unique< tag< Ent_mi_tag >, const_mem_fun< RefElement::interface_type_RefEntity, EntityHandle, &RefElement::getRefEnt > >, ordered_non_unique< tag< EntType_mi_tag >, const_mem_fun< RefElement::interface_type_RefEntity, EntityType, &RefElement::getEntType > > > > RefElement_multiIndex
MPI_Comm cOmm
MoFEM communicator.
Definition: Core.hpp:845
int * fShift
Ptr to tag handle storing last set bit in field ID.
Definition: Core.hpp:888
Tag th_FEIdCol
Definition: Core.hpp:207
RefEntity_multiIndex refinedEntities
refined entities
Definition: Core.hpp:244
std::bitset< BITPROBLEMID_SIZE > BitProblemId
Definition: Common.hpp:151
Provide data structure for (tensor) field approximation.The Field is intended to provide support for ...
FieldEntity_multiIndex entsFields
entities on fields
Definition: Core.hpp:248
MoFEMErrorCode rebuild_database(int verb=DEFAULT_VERBOSITY)
Clear database and initialize it once again.
Definition: Core.cpp:476
moab::Interface & get_moab()
Definition: Core.hpp:266
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:499
MoFEMErrorCode regSubInterface(const MOFEMuuid &uid)
Definition: Core.cpp:70
PetscLogEvent MOFEM_EVENT_operator
Event for evaluating operator of finite element.
Definition: Core.hpp:834
keeps data about abstract PRISM finite element
base class for all interface classes
multi_index_container< boost::shared_ptr< FieldEntity >, indexed_by< ordered_unique< tag< Unique_mi_tag >, member< FieldEntity, UId, &FieldEntity::globalUId > >, ordered_non_unique< tag< FieldName_mi_tag >, const_mem_fun< FieldEntity::interface_type_Field, boost::string_ref, &FieldEntity::getNameRef > >, ordered_non_unique< tag< Ent_mi_tag >, const_mem_fun< FieldEntity, EntityHandle, &FieldEntity::getEnt > >, ordered_non_unique< tag< Composite_Name_And_Ent_mi_tag >, composite_key< FieldEntity, const_mem_fun< FieldEntity::interface_type_Field, boost::string_ref, &FieldEntity::getNameRef >, const_mem_fun< FieldEntity, EntityHandle, &FieldEntity::getEnt > > > > > FieldEntity_multiIndex
MultiIndex container keeps FieldEntity.
Tag th_RefParentHandle
Definition: Core.hpp:201
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return() ...
Definition: definitions.h:475
static const MOFEMuuid IDD_MOFEMUnknown
IFACE getInterface() const
Get interface pointer to pointer of interface.
MoFEMErrorCode set_moab_interface(moab::Interface &new_moab, int verb=VERBOSE, const bool distributed_mesh=true)
Set the moab interface object.
Definition: Core.cpp:486
Tag th_ProblemFEId
Definition: Core.hpp:208
#define CHKERRG(n)
Check error code of MoFEM/MOAB/PETSc function.
Definition: definitions.h:542
multi_index_container< boost::shared_ptr< Field >, indexed_by< hashed_unique< tag< BitFieldId_mi_tag >, const_mem_fun< Field, const BitFieldId &, &Field::getId >, HashBit< BitFieldId >, EqBit< BitFieldId > >, ordered_unique< tag< Meshset_mi_tag >, member< Field, EntityHandle, &Field::meshSet > >, ordered_unique< tag< FieldName_mi_tag >, const_mem_fun< Field, boost::string_ref, &Field::getNameRef > >, ordered_non_unique< tag< BitFieldId_space_mi_tag >, const_mem_fun< Field, FieldSpace, &Field::getSpace > > > > Field_multiIndex
Field_multiIndex for Field.
MoFEMErrorCode get_fields(const Field_multiIndex **fields_ptr) const
Get fields multi-index from database.
Definition: Core.cpp:674
std::bitset< BITREFEDGES_SIZE > BitRefEdges
Definition: Common.hpp:141
static const MOFEMuuid IDD_MOFEMBitRefManager
MoFEMErrorCode list_finite_elements() const
list finite elements in database
Definition: FECore.cpp:311
std::bitset< BITFEID_SIZE > BitFEId
Definition: Common.hpp:150
BitIntefaceId uUId
PetscLogEvent MOFEM_EVENT_createMat
Definition: Core.hpp:837
static const MOFEMuuid IDD_MOFEMNodeMerger
Definition: NodeMerger.hpp:23
Tag th_FieldShift
Definition: Core.hpp:212
Interface for managing meshsets containing materials and boundary conditions.
std::bitset< BITFIELDID_SIZE > BitFieldId
Definition: Common.hpp:149
MoFEMErrorCode build_finite_elements(int verb=DEFAULT_VERBOSITY)
Build finite elementsBuild finite element data structures. Have to be run before problem and adjacenc...
Definition: FECore.cpp:793
static const MOFEMuuid IDD_MOFEMVEC
Definition: VecManager.hpp:26
Tag th_Part
Tag for partition number.
Definition: Core.hpp:200
Core(moab::Interface &moab, MPI_Comm comm=PETSC_COMM_WORLD, const int verbose=VERBOSE, const bool distributed_mesh=true)
Definition: Core.cpp:78
static const MOFEMuuid IDD_MOFEMPrismsFromSurface
Core (interface) class.
Definition: Core.hpp:50
Tag th_FEName
Definition: Core.hpp:206
Tag th_ElemType
Needed for VTK files.
Definition: Core.hpp:213
MoFEMErrorCode registerSubInterfaces()
Register insterfaces.
Definition: Core.cpp:161
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return() ...
Definition: definitions.h:506
BitProblemId getProblemShift()
Return unique problem Id.
Definition: Core.cpp:212
std::reference_wrapper< moab::Interface > moab
moab database
Definition: Core.hpp:265
keeps basic data about problemThis is low level structure with information about problem, what elements compose problem and what DOFs are on rows and columns.
PetscLogEvent MOFEM_EVENT_preProcess
Event for preProcess finite element.
Definition: Core.hpp:832
MoFEMErrorCode list_fields() const
list entities in the field
Definition: FieldCore.cpp:907
implementation of Data Operators for Forces and Sources
Definition: Common.hpp:21
static const MOFEMuuid IDD_MOFEMSimple
Definition: Simple.hpp:27
virtual const MoFEMErrorCode getFileVersion(moab::Interface &moab, Version &version) const
Get database major version.
FieldSpace in [ 0, LASTSPACE )
Definition: definitions.h:173
MoFEMErrorCode get_ref_finite_elements(const RefElement_multiIndex **refined_finite_elements_ptr) const
Get ref finite elements multi-index form database.
Definition: Core.cpp:686
MoFEMErrorCode getTags(int verb=-1)
get tags handlers used on meshsets
static MoFEMErrorCode Initialize(int *argc, char ***args, const char file[], const char help[])
Initializes the MoFEM database PETSc, MOAB and MPI.
Definition: Core.cpp:51
MoFEMErrorCode getTags(int verb=-1)
get tags handlers used on meshsets
MoFEMErrorCode addPrismToDatabase(const EntityHandle prism, int verb=DEFAULT_VERBOSITY)
add prim element
Definition: Core.cpp:237
MoFEMErrorCode clear_database(int verb=DEFAULT_VERBOSITY)
Clear database.
Definition: Core.cpp:468
Tag th_FieldId
Definition: Core.hpp:204
Tag th_RefBitEdge
Definition: Core.hpp:201
Tag th_ProblemName
Definition: Core.hpp:208
PetscBool initaliseAndBuildField
Definition: Core.hpp:902
Tag th_ProblemGhostNbDofCol
Definition: Core.hpp:211
std::bitset< BITREFLEVEL_SIZE > BitRefLevel
Bit structure attached to each entity identifying to what mesh entity is attached.
Definition: Common.hpp:147
static MoFEMErrorCodeGeneric< PetscErrorCode > ierr
Definition: Common.hpp:80
Tag th_ProblemId
Definition: Core.hpp:208
int rAnk
MOFEM communicator rank.
Definition: Core.hpp:849
Tag th_RefType
Definition: Core.hpp:203
Tag th_ProblemNbDofsRow
Definition: Core.hpp:209
MoFEMErrorCode initialiseDatabaseFromMesh(int verb=0)
MoFEMErrorCode getCoordSysPtr(const EntityHandle id, boost::shared_ptr< CoordSys > &cs_ptr)
get coordinate system by id
BitFEId getFEShift()
Return unique finite element Id.
Definition: Core.cpp:207
FieldApproximationBase
approximation base
Definition: definitions.h:141
static MoFEMErrorCodeGeneric< moab::ErrorCode > rval
Definition: Common.hpp:78
Tag th_ProblemGhostNbDofRow
Definition: Core.hpp:210
Finite element definition.
MoFEMErrorCode getTags(int verb=-1)
get tags handlers used on meshsets conating information about coordinate systems
static const MOFEMuuid IDD_MOFEMMeshRefine
MoFEMErrorCode getOptions(int verb=DEFAULT_VERBOSITY)
Get core options from command line.
Definition: Core.cpp:520
void macro_is_deprecated_using_deprecated_function()
Is used to indicate that macro is deprecated Do nothing just triggers error at the compilation...
Definition: Core.cpp:20
MoFEMErrorCode build_fields(int verb=DEFAULT_VERBOSITY)
Definition: FieldCore.cpp:876
int * buildMoFEM
keeps flags/semaphores for different stages
Definition: Core.hpp:897
multi_index_container< boost::shared_ptr< DofEntity >, indexed_by< ordered_unique< tag< Unique_mi_tag >, member< DofEntity, UId, &DofEntity::globalUId > >, ordered_non_unique< tag< Composite_Name_And_Ent_And_EntDofIdx_mi_tag >, composite_key< DofEntity, const_mem_fun< DofEntity::interface_type_Field, boost::string_ref, &DofEntity::getNameRef >, const_mem_fun< DofEntity, EntityHandle, &DofEntity::getEnt >, const_mem_fun< DofEntity, DofIdx, &DofEntity::getEntDofIdx > > >, ordered_non_unique< tag< Unique_Ent_mi_tag >, const_mem_fun< DofEntity, const UId &, &DofEntity::getEntGlobalUniqueId > >, ordered_non_unique< tag< FieldName_mi_tag >, const_mem_fun< DofEntity::interface_type_Field, boost::string_ref, &DofEntity::getNameRef > >, ordered_non_unique< tag< Ent_mi_tag >, const_mem_fun< DofEntity, EntityHandle, &DofEntity::getEnt > >, ordered_non_unique< tag< Composite_Name_And_Ent_mi_tag >, composite_key< DofEntity, const_mem_fun< DofEntity::interface_type_Field, boost::string_ref, &DofEntity::getNameRef >, const_mem_fun< DofEntity, EntityHandle, &DofEntity::getEnt > > >, ordered_non_unique< tag< Composite_Name_And_Type_mi_tag >, composite_key< DofEntity, const_mem_fun< DofEntity::interface_type_Field, boost::string_ref, &DofEntity::getNameRef >, const_mem_fun< DofEntity::interface_type_RefEntity, EntityType, &DofEntity::getEntType > > > > > DofEntity_multiIndex
MultiIndex container keeps DofEntity.
CHKERRQ(ierr)
Tag th_FieldBase
Definition: Core.hpp:204
#define BITFIELDID_SIZE
max number of fields
Definition: definitions.h:278
FieldEntityEntFiniteElementAdjacencyMap_multiIndex entFEAdjacencies
adjacencies of elements to dofs
Definition: Core.hpp:255
InterfaceThis interface is used by user to:
Definition: Interface.hpp:42
Tag th_MoFEMBuild
Definition: Core.hpp:214
RefElement_multiIndex refinedFiniteElements
refined elements
Definition: Core.hpp:245
int * feShift
Ptr to tag handle storing last set bit in finite element ID.
Definition: Core.hpp:889
MeshsetsManager * get_meshsets_manager_ptr()
get MeshsetsManager pointer
Definition: Core.cpp:727
MoFEMErrorCode get_ref_ents(const RefEntity_multiIndex **refined_entities_ptr) const
Get ref entities multi-index from database.
Definition: Core.cpp:681
Tag th_ProblemLocalNbDofRow
Definition: Core.hpp:210
FiniteElement_multiIndex finiteElements
finite elements
Definition: Core.hpp:251
Problem_multiIndex pRoblems
problems multi-index
Definition: Core.hpp:257
MoFEMErrorCode getTags(int verb=DEFAULT_VERBOSITY)
Get tag handles.
Definition: Core.cpp:266
static const MOFEMuuid IDD_MOFEMTools
Definition: Tools.hpp:23
multi_index_container< Problem, indexed_by< ordered_unique< tag< Meshset_mi_tag >, member< Problem, EntityHandle, &Problem::meshset > >, hashed_unique< tag< BitProblemId_mi_tag >, const_mem_fun< Problem, BitProblemId, &Problem::getId >, HashBit< BitProblemId >, EqBit< BitProblemId > >, hashed_unique< tag< Problem_mi_tag >, const_mem_fun< Problem, std::string, &Problem::getName > > > > Problem_multiIndex
MultiIndex for entities for Problem.
Tag th_ProblemLocalNbDofCol
Definition: Core.hpp:211
static bool isGloballyInitialised
Core base globally initialized.
Definition: Core.hpp:898
MoFEMErrorCode list_problem() const
list problems
Tag th_FieldName
Definition: Core.hpp:204
FieldSpace
approximation spaces
Definition: definitions.h:166
Tag th_FEShift
Definition: Core.hpp:212
MoFEMErrorCode get_field_ents(const FieldEntity_multiIndex **field_ents) const
Get field multi index.
Definition: Core.cpp:716
static const MOFEMuuid IDD_MOFEMTetGegInterface
#define CHKERR
Inline error check.
Definition: definitions.h:594
PetscBool initaliseAndBuildFiniteElements
Definition: Core.hpp:905
Field_multiIndex fIelds
fields
Definition: Core.hpp:247
int * pShift
Ptr to tag handle storing last set bit in problem ID.
Definition: Core.hpp:890
static const MOFEMuuid IDD_MOFEMCutMesh
static const MOFEMuuid IDD_MOFEMMatrixManager
static const MOFEMuuid IDD_MOFEMCoordsSystemsManager
static char help[]
boost::shared_ptr< BasicEntityData > basicEntityDataPtr
Definition: Core.hpp:225
#define MYPCOMM_INDEX
default communicator number PCOMM
Definition: definitions.h:283
MoFEMErrorCode get_problem(const std::string &problem_name, const Problem **problem_ptr) const
Get problem database (data structure)
Definition: Core.cpp:693
static PetscErrorCode mofem_error_handler(MPI_Comm comm, int line, const char *fun, const char *file, PetscErrorCode n, PetscErrorType p, const char *mess, void *ctx)
multi_index_container< boost::shared_ptr< RefEntity >, indexed_by< ordered_unique< tag< Ent_mi_tag >, member< RefEntity::BasicEntity, EntityHandle, &RefEntity::ent > >, ordered_non_unique< tag< Ent_Ent_mi_tag >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getParentEnt > >, ordered_non_unique< tag< EntType_mi_tag >, const_mem_fun< RefEntity::BasicEntity, EntityType, &RefEntity::getEntType > >, ordered_non_unique< tag< ParentEntType_mi_tag >, const_mem_fun< RefEntity, EntityType, &RefEntity::getParentEntType > >, ordered_non_unique< tag< Composite_EntType_and_ParentEntType_mi_tag >, composite_key< RefEntity, const_mem_fun< RefEntity::BasicEntity, EntityType, &RefEntity::getEntType >, const_mem_fun< RefEntity, EntityType, &RefEntity::getParentEntType > > >, ordered_non_unique< tag< Composite_ParentEnt_And_EntType_mi_tag >, composite_key< RefEntity, const_mem_fun< RefEntity::BasicEntity, EntityType, &RefEntity::getEntType >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getParentEnt > > > > > RefEntity_multiIndex
MoFEMErrorCode get_problems(const Problem_multiIndex **problems_ptr) const
Get pointer to problems multi-index.
Definition: Core.cpp:709
MoFEMErrorCode set_field_order(const Range &ents, const BitFieldId id, const ApproximationOrder order, int verb=DEFAULT_VERBOSITY)
Definition: FieldCore.cpp:314
static const MOFEMuuid IDD_MOFEMFieldBlas
Definition: FieldBlas.hpp:26
MoFEMErrorCode get_dofs(const DofEntity_multiIndex **dofs_ptr) const
Get dofs multi index.
Definition: Core.cpp:721
Tag th_ProblemShift
Definition: Core.hpp:212
ParallelComm * pComm
MOAB communicator structure.
Definition: Core.hpp:846
int verbose
Verbosity level.
Definition: Core.hpp:886
Tag th_RefBitLevel_Mask
Definition: Core.hpp:201
Tag th_FEId
Definition: Core.hpp:206
MoFEMErrorCode initialiseDatabaseFromMesh(int verb=0)
boost::ptr_map< unsigned long, UnknownInterface > iFaces
Hash map of pointers to interfaces.
Definition: Core.hpp:895
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:405
static const MOFEMuuid IDD_MOFEMISManager
Definition: ISManager.hpp:26
std::string optionsPrefix
Prefix for options on command line.
Definition: Core.hpp:900
Tag th_RefBitLevel
Definition: Core.hpp:201
EntFiniteElement_multiIndex entsFiniteElements
finite element entities
Definition: Core.hpp:252
static const MOFEMuuid IDD_MOFEMDeprecatedCoreInterface
Definition: Interface.hpp:26
static const MOFEMuuid IDD_MOFEMPrismInterface
Tag th_FEIdData
Definition: Core.hpp:207
#define NOT_USED(x)
Definition: definitions.h:301
DEPRECATED IFace * query_interface() const
static const MOFEMuuid IDD_MOFEMMedInterface
BitFieldId getFieldShift()
Return unique field Id.
Definition: Core.cpp:195
static const MOFEMuuid IDD_MOFEMBitLevelCoupler
Tag th_FEIdRow
Definition: Core.hpp:207
static MoFEMErrorCode Finalize()
Checks for options to be called at the conclusion of the program.
Definition: Core.cpp:61