v0.8.21
Core.cpp
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1 /** \file Core.cpp
2  * \brief Multi-index containers, data structures and other low-level functions
3  */
4 
5 /* MoFEM is free software: you can redistribute it and/or modify it under
6  * the terms of the GNU Lesser General Public License as published by the
7  * Free Software Foundation, either version 3 of the License, or (at your
8  * option) any later version.
9  *
10  * MoFEM is distributed in the hope that it will be useful, but WITHOUT
11  * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
12  * FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public
13  * License for more details.
14  *
15  * You should have received a copy of the GNU Lesser General Public
16  * License along with MoFEM. If not, see <http://www.gnu.org/licenses/>
17  */
18 
19 extern "C" {
21 }
22 
23 namespace MoFEM {
24 
26  UnknownInterface **iface) const {
28  *iface = NULL;
29  if (uuid == IDD_MOFEMCoreInterface) {
30  *iface = static_cast<CoreInterface *>(const_cast<Core *>(this));
32  } else if (uuid == IDD_MOFEMDeprecatedCoreInterface) {
33  *iface = static_cast<DeprecatedCoreInterface *>(const_cast<Core *>(this));
35  }
36  // Get sub-interface
37  unsigned long int id = uuid.uUId.to_ulong();
38  boost::ptr_map<unsigned long, UnknownInterface>::iterator it;
39  it = iFaces.find(id);
40  if (it != iFaces.end()) {
41  *iface = it->second;
43  }
44  *iface = NULL;
45  SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY, "unknown interface");
47 }
48 
49 bool Core::isGloballyInitialised = false;
50 
51 MoFEMErrorCode Core::Initialize(int *argc, char ***args, const char file[],
52  const char help[]) {
53  ierr = PetscInitialize(argc, args, file, help);
54  CHKERRG(ierr);
55  ierr = PetscPushErrorHandler(mofem_error_handler, PETSC_NULL);
56  CHKERRG(ierr);
57  isGloballyInitialised = true;
58  return MOFEM_SUCCESS;
59 }
60 
62  CHKERRQ(ierr);
63  ierr = PetscPopErrorHandler();
64  CHKERRG(ierr);
65  isGloballyInitialised = false;
66  return PetscFinalize();
67 }
68 
69 // Use SFINAE to decide which template should be run,
70 // if exist getSubInterfaceOptions run this one.
71 template <class T>
72 static auto get_sub_iface_options_imp(T *const ptr, int)
73  -> decltype(ptr->getSubInterfaceOptions()) {
74  return ptr->getSubInterfaceOptions();
75 };
76 
77 // Use SFINAE to decide which template should be run,
78 // if getSubInterfaceOptions not exist run this one.
79 template <class T>
80 static auto get_sub_iface_options_imp(T *const ptr, long) -> MoFEMErrorCode {
81  return 0;
82 };
83 
84 template <class IFACE>
87  CHKERR registerInterface<IFACE>(uid, false);
88  unsigned long int id = uid.uUId.to_ulong();
89  IFACE *ptr = new IFACE(*this);
90 
91  // If sub interface has function getSubInterfaceOptions run
92  // it after construction. getSubInterfaceOptions is used to
93  // get parameters from command line.
94  // See SFINAE:
95  // https://stackoverflow.com/questions/257288/is-it-possible-to-write-a-template-to-check-for-a-functions-existence
96  // https://en.wikipedia.org/wiki/Substitution_failure_is_not_an_error
97  auto get_sub_iface_options = [](auto *const ptr) {
98  return get_sub_iface_options_imp(ptr, 0);
99  };
100  CHKERR get_sub_iface_options(ptr);
101 
102  iFaces.insert(id, ptr);
104 }
105 
106 Core::Core(moab::Interface &moab, MPI_Comm comm, const int verbose,
107  const bool distributed_mesh)
108  : moab(moab), cOmm(0), verbose(verbose),
109  initaliseAndBuildField(PETSC_FALSE),
110  initaliseAndBuildFiniteElements(PETSC_FALSE) {
111 
112  // This is deprecated ONE should use MoFEM::Core::Initialize
113  if (!isGloballyInitialised) {
114  PetscPushErrorHandler(mofem_error_handler, PETSC_NULL);
115  isGloballyInitialised = true;
116  }
117 
118  // Create duplicate communicator
119  wrapMPIComm = boost::make_shared<WrapMPIComm>(comm, cOmm);
120  MPI_Comm_size(cOmm, &sIze);
121  MPI_Comm_rank(cOmm, &rAnk);
122  // CHeck if moab has set communicator if not set communicator interbally
123  ParallelComm *pComm = ParallelComm::get_pcomm(&moab, MYPCOMM_INDEX);
124  if (pComm == NULL) {
125  pComm = new ParallelComm(&moab, cOmm);
126  }
127 
128  // Register interfaces for this implementation
129  ierr = registerInterface<UnknownInterface>(IDD_MOFEMUnknown);
130  CHKERRABORT(comm, ierr);
131  ierr = registerInterface<CoreInterface>(IDD_MOFEMCoreInterface);
132  CHKERRABORT(comm, ierr);
133  ierr = registerInterface<DeprecatedCoreInterface>(
135  CHKERRABORT(comm, ierr);
136 
137  // Register sub-interfaces
139  CHKERRABORT(PETSC_COMM_SELF, ierr);
140 
141  // Register MOFEM events in PETSc
142  PetscLogEventRegister("FE_preProcess", 0, &MOFEM_EVENT_preProcess);
143  PetscLogEventRegister("FE_operator", 0, &MOFEM_EVENT_operator);
144  PetscLogEventRegister("FE_postProcess", 0, &MOFEM_EVENT_postProcess);
145  PetscLogEventRegister("MoFEMCreateMat", 0, &MOFEM_EVENT_createMat);
146 
147  // Initialize database
148  ierr = getTags();
149  CHKERRABORT(cOmm, ierr);
150  ierr = clearMap();
151  CHKERRABORT(cOmm, ierr);
152 
153  basicEntityDataPtr = boost::make_shared<BasicEntityData>(moab);
154  if (distributed_mesh)
155  basicEntityDataPtr->setDistributedMesh();
156  else
157  basicEntityDataPtr->unSetDistributedMesh();
158 
160  CHKERRABORT(cOmm, ierr);
162  CHKERRABORT(cOmm, ierr);
163 
164  // Print version
165  if (verbose > QUIET) {
166  char petsc_version[255];
167  ierr = PetscGetVersion(petsc_version, 255);
168  CHKERRABORT(cOmm, ierr);
169  ierr = PetscPrintf(cOmm, "MoFEM version %d.%d.%d (%s %s) \n",
170  MoFEM_VERSION_MAJOR, MoFEM_VERSION_MINOR,
171  MoFEM_VERSION_BUILD, MOAB_VERSION_STRING, petsc_version);
172  CHKERRABORT(cOmm, ierr);
173  ierr = PetscPrintf(cOmm, "git commit id %s\n", GIT_SHA1_NAME);
174  CHKERRABORT(cOmm, ierr);
175  }
176 }
177 
179  PetscBool is_finalized;
180  PetscFinalized(&is_finalized);
181  // Destroy interfaces
182  iFaces.clear();
183  // This is deprecated ONE should use MoFEM::Core::Initialize
184  if (isGloballyInitialised && is_finalized) {
185  isGloballyInitialised = false;
186  }
187 }
188 
191 
192  iFaces.clear();
193 
194  // Register sub interfaces
195  CHKERR regSubInterface<Simple>(IDD_MOFEMSimple);
196  CHKERR regSubInterface<ProblemsManager>(IDD_MOFEMProblemsManager);
197  CHKERR regSubInterface<MatrixManager>(IDD_MOFEMMatrixManager);
198  CHKERR regSubInterface<ISManager>(IDD_MOFEMISManager);
199  CHKERR regSubInterface<VecManager>(IDD_MOFEMVEC);
200  CHKERR regSubInterface<FieldBlas>(IDD_MOFEMFieldBlas);
201  CHKERR regSubInterface<BitRefManager>(IDD_MOFEMBitRefManager);
202  CHKERR regSubInterface<Tools>(IDD_MOFEMTools);
203  CHKERR regSubInterface<MeshsetsManager>(IDD_MOFEMMeshsetsManager);
204  CHKERR regSubInterface<CoordSystemsManager>(IDD_MOFEMCoordsSystemsManager);
205  CHKERR regSubInterface<NodeMergerInterface>(IDD_MOFEMNodeMerger);
206  CHKERR regSubInterface<BitLevelCoupler>(IDD_MOFEMBitLevelCoupler);
207  CHKERR regSubInterface<PrismsFromSurfaceInterface>(
209  CHKERR regSubInterface<MeshRefinement>(IDD_MOFEMMeshRefine);
210  CHKERR regSubInterface<PrismInterface>(IDD_MOFEMPrismInterface);
211  CHKERR regSubInterface<CutMeshInterface>(IDD_MOFEMCutMesh);
212  CHKERR regSubInterface<SeriesRecorder>(IDD_MOFEMSeriesRecorder);
213 #ifdef WITH_TETGEN
214  CHKERR regSubInterface<TetGenInterface>(IDD_MOFEMTetGegInterface);
215 #endif
216 #ifdef WITH_MED
217  CHKERR regSubInterface<MedInterface>(IDD_MOFEMMedInterface);
218 #endif
219 
221 };
222 
224  if (*fShift >= BITFIELDID_SIZE) {
225  char msg[] = "number of fields exceeded";
226  PetscTraceBackErrorHandler(cOmm, __LINE__, PETSC_FUNCTION_NAME, __FILE__,
227  MOFEM_DATA_INCONSISTENCY, PETSC_ERROR_INITIAL,
228  msg, PETSC_NULL);
229  PetscMPIAbortErrorHandler(cOmm, __LINE__, PETSC_FUNCTION_NAME, __FILE__,
230  MOFEM_DATA_INCONSISTENCY, PETSC_ERROR_INITIAL,
231  msg, PETSC_NULL);
232  }
233  return BitFieldId().set(((*fShift)++) - 1);
234 }
236  assert((unsigned int)*feShift < BitFEId().set().to_ulong());
237  return BitFEId(1 << (((*feShift)++) - 1));
238 }
239 
241  assert((unsigned int)*pShift < BitProblemId().set().to_ulong());
242  return BitProblemId(1 << (((*pShift)++) - 1));
243 }
244 
247  // Cleaning databases in interfaces
248  CHKERR getInterface<SeriesRecorder>()->clearMap();
249  CHKERR getInterface<MeshsetsManager>()->clearMap();
250  CHKERR getInterface<CoordSystemsManager>()->clearMap();
251  CHKERR getInterface<CutMeshInterface>()->clearMap();
252  // Cleaning databases
253  refinedEntities.clear();
254  refinedFiniteElements.clear();
255  fIelds.clear();
256  entsFields.clear();
257  dofsField.clear();
258  finiteElements.clear();
259  entsFiniteElements.clear();
260  entFEAdjacencies.clear();
261  pRoblems.clear();
263 }
264 
267  if (verb == -1)
268  verb = verbose;
269  std::pair<RefEntity_multiIndex::iterator, bool> p_ent;
270  p_ent = refinedEntities.insert(
271  boost::make_shared<RefEntity>(basicEntityDataPtr, prism));
272  if (p_ent.second) {
273  std::pair<RefElement_multiIndex::iterator, bool> p;
274  p = refinedFiniteElements.insert(
275  boost::shared_ptr<RefElement>(new RefElement_PRISM(*p_ent.first)));
276  int num_nodes;
277  const EntityHandle *conn;
278  CHKERR get_moab().get_connectivity(prism, conn, num_nodes, true);
279  Range face_side3, face_side4;
280  CHKERR get_moab().get_adjacencies(conn, 3, 2, false, face_side3);
281  CHKERR get_moab().get_adjacencies(&conn[3], 3, 2, false, face_side4);
282  if (face_side3.size() != 1)
283  SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
284  "prism don't have side face 3");
285  if (face_side4.size() != 1)
286  SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
287  "prims don't have side face 4");
288  p.first->get()->getSideNumberPtr(*face_side3.begin());
289  p.first->get()->getSideNumberPtr(*face_side4.begin());
290  }
292 }
293 
296 
297  const EntityHandle root_meshset = get_moab().get_root_set();
298  if (root_meshset) {
299  SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
300  "Root meshset should be 0");
301  }
302 
303  // Set version
304  {
305  Version version;
306  CHKERR getFileVersion(moab, version);
307  }
308 
309  // Global Variables
310  {
311 
312  auto check_tag_allocated = [](auto &rval) {
314  if (rval == MB_ALREADY_ALLOCATED)
315  rval = MB_SUCCESS;
316  else
317  CHKERRG(rval);
319  };
320 
321  // Fields
322  int def_shift = 1;
323  rval = get_moab().tag_get_handle("_FieldShift", 1, MB_TYPE_INTEGER,
324  th_FieldShift, MB_TAG_CREAT | MB_TAG_MESH,
325  &def_shift);
326  CHKERR check_tag_allocated(rval);
327 
328  const void *tag_data[1];
329  CHKERR get_moab().tag_get_by_ptr(th_FieldShift, &root_meshset, 1, tag_data);
330  fShift = (int *)tag_data[0];
331  // FE
332  rval = get_moab().tag_get_handle("_FEShift", 1, MB_TYPE_INTEGER, th_FEShift,
333  MB_TAG_CREAT | MB_TAG_MESH, &def_shift);
334  CHKERR check_tag_allocated(rval);
335 
336  CHKERR get_moab().tag_get_by_ptr(th_FEShift, &root_meshset, 1, tag_data);
337  feShift = (int *)tag_data[0];
338  // Problem
339  rval = get_moab().tag_get_handle("_ProblemShift", 1, MB_TYPE_INTEGER,
341  MB_TAG_CREAT | MB_TAG_MESH, &def_shift);
342  CHKERR check_tag_allocated(rval);
343 
344  CHKERR get_moab().tag_get_by_ptr(th_ProblemShift, &root_meshset, 1,
345  tag_data);
346  pShift = (int *)tag_data[0];
347  // Safety nets
348  int def_bool = 0;
349  rval = get_moab().tag_get_handle("_MoFEMBuild", 1, MB_TYPE_INTEGER,
350  th_MoFEMBuild, MB_TAG_CREAT | MB_TAG_MESH,
351  &def_bool);
352  CHKERR check_tag_allocated(rval);
353 
354  CHKERR get_moab().tag_get_by_ptr(th_MoFEMBuild, &root_meshset, 1,
355  (const void **)&buildMoFEM);
356  }
357 
358  // Tags saved in vtk-files
359  {
360  const int def_part = -1;
361  CHKERR get_moab().tag_get_handle("PARTITION", 1, MB_TYPE_INTEGER, th_Part,
362  MB_TAG_CREAT | MB_TAG_SPARSE, &def_part);
363  int def_elem_type = MBMAXTYPE;
364  CHKERR get_moab().tag_get_handle("ElemType", 1, MB_TYPE_INTEGER,
365  th_ElemType, MB_TAG_CREAT | MB_TAG_SPARSE,
366  &def_elem_type);
367  }
368 
369  // Tags Ref
370  {
371  EntityHandle def_handle = 0;
372  CHKERR get_moab().tag_get_handle("_RefParentHandle", 1, MB_TYPE_HANDLE,
374  MB_TAG_CREAT | MB_TAG_SPARSE, &def_handle);
375  BitRefLevel def_bit_level = 0;
376  CHKERR get_moab().tag_get_handle(
377  "_RefBitLevel", sizeof(BitRefLevel), MB_TYPE_OPAQUE, th_RefBitLevel,
378  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_bit_level);
379  BitRefLevel def_bit_level_mask = BitRefLevel().set();
380  CHKERR get_moab().tag_get_handle(
381  "_RefBitLevelMask", sizeof(BitRefLevel), MB_TYPE_OPAQUE,
382  th_RefBitLevel_Mask, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
383  &def_bit_level_mask);
384  BitRefEdges def_bit_edge = 0;
385  CHKERR get_moab().tag_get_handle(
386  "_RefBitEdge", sizeof(BitRefEdges), MB_TYPE_OPAQUE, th_RefBitEdge,
387  MB_TAG_CREAT | MB_TAG_SPARSE | MB_TAG_BYTES, &def_bit_edge);
388  const int def_type[] = {0, 0};
389  CHKERR get_moab().tag_get_handle("_RefType", 2, MB_TYPE_INTEGER, th_RefType,
390  MB_TAG_CREAT | MB_TAG_SPARSE, def_type);
391  }
392 
393  // Tags Field
394  {
395  const unsigned long int def_id = 0;
396  CHKERR get_moab().tag_get_handle(
397  "_FieldId", sizeof(BitFieldId), MB_TYPE_OPAQUE, th_FieldId,
398  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
399  FieldSpace def_space = LASTSPACE;
400  CHKERR get_moab().tag_get_handle(
401  "_FieldSpace", sizeof(FieldSpace), MB_TYPE_OPAQUE, th_FieldSpace,
402  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_space);
403  FieldApproximationBase def_base = LASTBASE;
404  CHKERR get_moab().tag_get_handle(
405  "_FieldBase", sizeof(FieldApproximationBase), MB_TYPE_OPAQUE,
406  th_FieldBase, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_base);
407  const int def_val_len = 0;
408  CHKERR get_moab().tag_get_handle(
409  "_FieldName", def_val_len, MB_TYPE_OPAQUE, th_FieldName,
410  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_VARLEN | MB_TAG_SPARSE, NULL);
411  CHKERR get_moab().tag_get_handle(
412  "_FieldName_DataNamePrefix", def_val_len, MB_TYPE_OPAQUE,
414  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_VARLEN | MB_TAG_SPARSE, NULL);
415  }
416 
417  // Tags FE
418  {
419  const unsigned long int def_id = 0;
420  const int def_val_len = 0;
421  CHKERR get_moab().tag_get_handle(
422  "_FEId", sizeof(BitFEId), MB_TYPE_OPAQUE, th_FEId,
423  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
424  CHKERR get_moab().tag_get_handle(
425  "_FEName", def_val_len, MB_TYPE_OPAQUE, th_FEName,
426  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_VARLEN | MB_TAG_SPARSE, NULL);
427  CHKERR get_moab().tag_get_handle(
428  "_FEIdCol", sizeof(BitFieldId), MB_TYPE_OPAQUE, th_FEIdCol,
429  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
430  CHKERR get_moab().tag_get_handle(
431  "_FEIdRow", sizeof(BitFieldId), MB_TYPE_OPAQUE, th_FEIdRow,
432  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
433  CHKERR get_moab().tag_get_handle(
434  "_FEIdData", sizeof(BitFieldId), MB_TYPE_OPAQUE, th_FEIdData,
435  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
436  }
437 
438  // Tags Problem
439  {
440  const unsigned long int def_id = 0;
441  const int def_val_len = 0;
442  CHKERR get_moab().tag_get_handle(
443  "_ProblemId", sizeof(BitProblemId), MB_TYPE_OPAQUE, th_ProblemId,
444  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
445  CHKERR get_moab().tag_get_handle(
446  "_ProblemFEId", sizeof(BitFEId), MB_TYPE_OPAQUE, th_ProblemFEId,
447  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
448  CHKERR get_moab().tag_get_handle(
449  "_ProblemName", def_val_len, MB_TYPE_OPAQUE, th_ProblemName,
450  MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_VARLEN | MB_TAG_SPARSE, NULL);
451  DofIdx def_nbdofs = 0;
452  CHKERR get_moab().tag_get_handle(
453  "_ProblemNbDofsRow", sizeof(DofIdx), MB_TYPE_OPAQUE,
454  th_ProblemNbDofsRow, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
455  &def_nbdofs);
456  CHKERR get_moab().tag_get_handle(
457  "_ProblemNbDofsCol", sizeof(DofIdx), MB_TYPE_OPAQUE,
458  th_ProblemNbDofsCol, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
459  &def_nbdofs);
460  CHKERR get_moab().tag_get_handle(
461  "_ProblemLocalNbDofsRow", sizeof(DofIdx), MB_TYPE_OPAQUE,
462  th_ProblemLocalNbDofRow, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
463  &def_nbdofs);
464  CHKERR get_moab().tag_get_handle(
465  "_ProblemGhostNbDofsRow", sizeof(DofIdx), MB_TYPE_OPAQUE,
466  th_ProblemGhostNbDofRow, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
467  &def_nbdofs);
468  CHKERR get_moab().tag_get_handle(
469  "_ProblemLocalNbDofsCol", sizeof(DofIdx), MB_TYPE_OPAQUE,
470  th_ProblemLocalNbDofCol, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
471  &def_nbdofs);
472  CHKERR get_moab().tag_get_handle(
473  "_ProblemGhostNbDofsCol", sizeof(DofIdx), MB_TYPE_OPAQUE,
474  th_ProblemGhostNbDofCol, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
475  &def_nbdofs);
476  }
477 
478  // Meshsets with boundary conditions and material sets
479  MeshsetsManager *meshsets_manager_ptr;
480  CHKERR getInterface(meshsets_manager_ptr);
481  CHKERR meshsets_manager_ptr->getTags(verb);
482 
483  // Series recorder
484  SeriesRecorder *series_recorder_ptr;
485  CHKERR getInterface(series_recorder_ptr);
486  CHKERR series_recorder_ptr->getTags(verb);
487 
488  // Coordinate systems
489  CoordSystemsManager *cs_manger_ptr;
490  CHKERR getInterface(cs_manger_ptr);
491  CHKERR cs_manger_ptr->getTags(verb);
492 
494 }
495 
498  if (verb == -1)
499  verb = verbose;
500  CHKERR clearMap();
502 }
503 
506  if (verb == -1)
507  verb = verbose;
508  CHKERR clearMap();
509  CHKERR getTags(verb);
512 }
513 
514 MoFEMErrorCode Core::set_moab_interface(moab::Interface &new_moab, int verb,
515  const bool distributed_mesh) {
517  if (verb == -1)
518  verb = verbose;
519 
520  // clear moab database
521  CHKERR clearMap();
522 
523  // set new reference
524  moab = std::ref(new_moab);
525 
526  // check if moab has set communicator if not set communicator internally
527  ParallelComm *pComm = ParallelComm::get_pcomm(&new_moab, MYPCOMM_INDEX);
528  if (pComm == NULL) {
529  pComm = new ParallelComm(&new_moab, cOmm);
530  }
531 
532  // create MoFEM tags
533  CHKERR getTags();
534 
535  // Create basic entity data struture
536  basicEntityDataPtr = boost::make_shared<BasicEntityData>(moab);
537  if (distributed_mesh)
538  basicEntityDataPtr->setDistributedMesh();
539  else
540  basicEntityDataPtr->unSetDistributedMesh();
541 
542  // Initalise database
544 
546 };
547 
550  if (verb == -1)
551  verb = verbose;
552 
553  CHKERR PetscOptionsBegin(cOmm, optionsPrefix.c_str(), "Mesh cut options",
554  "See MoFEM documentation");
555 
556  CHKERR PetscOptionsBool(
557  "-mofem_init_fields", "Initialise fields on construction", "",
559 
560  CHKERR PetscOptionsBool(
561  "-mofem_init_fields", "Initialise fields on construction", "",
563 
564  // TODO: Add read verbosity level
565  // TODO: Add option to initalise problems ??? - DO WE REALLY NEED THAT
566 
567  ierr = PetscOptionsEnd();
568  CHKERRG(ierr);
569 
571 }
572 
575  if (verb == -1)
576  verb = verbose;
577 
578  CoordSystemsManager *cs_manger_ptr;
579  CHKERR getInterface(cs_manger_ptr);
580 
581  // Initialize coordinate systems
582  CHKERR cs_manger_ptr->initialiseDatabaseFromMesh(verb);
583 
584  Range ref_elems_to_add;
585 
586  // Initialize database
587  Range meshsets;
588  CHKERR get_moab().get_entities_by_type(0, MBENTITYSET, meshsets, false);
589  Range special_meshsets;
590  for (Range::iterator mit = meshsets.begin(); mit != meshsets.end(); mit++) {
591  BitFieldId field_id;
592  // Get bit id form field tag
593  CHKERR get_moab().tag_get_data(th_FieldId, &*mit, 1, &field_id);
594  // Check if meshset if field meshset
595  if (field_id != 0) {
596  std::pair<Field_multiIndex::iterator, bool> p;
597  const char *cs_name;
598  int cs_name_size;
599  boost::shared_ptr<CoordSys> cs_ptr;
600  rval =
601  get_moab().tag_get_by_ptr(cs_manger_ptr->get_th_CoordSysName(), &*mit,
602  1, (const void **)&cs_name, &cs_name_size);
603  if (rval == MB_SUCCESS && cs_name_size) {
604  CHKERR cs_manger_ptr->getCoordSysPtr(std::string(cs_name, cs_name_size),
605  cs_ptr);
606  } else {
607  CHKERR cs_manger_ptr->getCoordSysPtr("UNDEFINED", cs_ptr);
608  }
609  p = fIelds.insert(
610  boost::shared_ptr<Field>(new Field(moab, *mit, cs_ptr)));
611  if (verb >= VERBOSE) {
612  std::ostringstream ss;
613  ss << "read field " << **p.first << std::endl;
614  PetscPrintf(cOmm, ss.str().c_str());
615  }
616  special_meshsets.insert(*mit);
617  }
618  // Check for finite elements
619  BitFieldId fe_id;
620  // Get bit id from fe tag
621  CHKERR get_moab().tag_get_data(th_FEId, &*mit, 1, &fe_id);
622  // check if meshset is finite element meshset
623  if (fe_id != 0) {
624  std::pair<FiniteElement_multiIndex::iterator, bool> p =
625  finiteElements.insert(
626  boost::shared_ptr<FiniteElement>(new FiniteElement(moab, *mit)));
627  if (verb >= VERBOSE) {
628  std::ostringstream ss;
629  ss << "read finite element " << **p.first << std::endl;
630  PetscPrintf(cOmm, ss.str().c_str());
631  }
632  NOT_USED(p);
633  Range ents;
634  CHKERR get_moab().get_entities_by_type(*mit, MBENTITYSET, ents, false);
635  CHKERR get_moab().get_entities_by_handle(*mit, ents, true);
636  ref_elems_to_add.merge(ents);
637  special_meshsets.insert(*mit);
638  }
639  BitProblemId problem_id;
640  // get bit id form problem tag
641  CHKERR get_moab().tag_get_data(th_ProblemId, &*mit, 1, &problem_id);
642  // check if meshset if problem meshset
643  if (problem_id != 0) {
644  std::pair<Problem_multiIndex::iterator, bool> p =
645  pRoblems.insert(Problem(moab, *mit));
646  if (verb >= VERBOSE) {
647  std::ostringstream ss;
648  ss << "read problem " << *p.first << " bit ref "
649  << p.first->getBitRefLevel() << " bit mask "
650  << p.first->getMaskBitRefLevel() << std::endl;
651  PetscPrintf(cOmm, ss.str().c_str());
652  }
653  special_meshsets.insert(*mit);
654  }
655  }
656 
657  // Add entities to database
658  Range bit_ref_ents;
659  CHKERR get_moab().get_entities_by_handle(0, bit_ref_ents, false);
660  bit_ref_ents = subtract(bit_ref_ents, special_meshsets);
661  CHKERR getInterface<BitRefManager>()->filterEntitiesByRefLevel(
662  BitRefLevel().set(), BitRefLevel().set(), bit_ref_ents);
663  CHKERR getInterface<BitRefManager>()->setEntitiesBitRefLevel(bit_ref_ents);
664  CHKERR getInterface<BitRefManager>()->setElementsBitRefLevel(
665  ref_elems_to_add);
666 
667  // Build field entities
668  for (Field_multiIndex::iterator fit = fIelds.begin(); fit != fIelds.end();
669  ++fit) {
670  Range ents_of_id_meshset;
671  CHKERR get_moab().get_entities_by_handle(fit->get()->getMeshset(),
672  ents_of_id_meshset, false);
673  CHKERR set_field_order(ents_of_id_meshset, fit->get()->getId(), -1);
674  }
675 
677  CHKERR build_fields(verb);
680  }
681  }
682 
683  if (verb > VERY_NOISY) {
684  list_fields();
686  list_problem();
687  }
688 
689  // Initialize interfaces
690  MeshsetsManager *m_manger_ptr;
691  CHKERR getInterface(m_manger_ptr);
692  CHKERR m_manger_ptr->initialiseDatabaseFromMesh(verb);
693  SeriesRecorder *series_recorder_ptr;
694  CHKERR getInterface(series_recorder_ptr);
695  CHKERR series_recorder_ptr->initialiseDatabaseFromMesh(verb);
696 
698 }
699 
700 // cubit meshsets
701 
704  *fields_ptr = &fIelds;
706 }
707 
709 Core::get_ref_ents(const RefEntity_multiIndex **refined_entities_ptr) const {
711  *refined_entities_ptr = &refinedEntities;
713 }
715  const RefElement_multiIndex **refined_finite_elements_ptr) const {
717  *refined_finite_elements_ptr = &refinedFiniteElements;
719 }
720 
721 MoFEMErrorCode Core::get_problem(const std::string &problem_name,
722  const Problem **problem_ptr) const {
724  typedef Problem_multiIndex::index<Problem_mi_tag>::type ProblemsByName;
725  const ProblemsByName &problems = pRoblems.get<Problem_mi_tag>();
726  ProblemsByName::iterator p_miit = problems.find(problem_name);
727  if (p_miit == problems.end()) {
728  SETERRQ1(PETSC_COMM_SELF, MOFEM_OPERATION_UNSUCCESSFUL,
729  "problem < %s > not found, (top tip: check spelling)",
730  problem_name.c_str());
731  }
732  *problem_ptr = &*p_miit;
734 }
735 
737 Core::get_problems(const Problem_multiIndex **problems_ptr) const {
739  *problems_ptr = &pRoblems;
741 }
742 
744 Core::get_field_ents(const FieldEntity_multiIndex **field_ents) const {
746  *field_ents = &entsFields;
748 }
751  *dofs_ptr = &dofsField;
753 }
754 
756  MeshsetsManager *meshsets_manager_ptr;
757  getInterface(meshsets_manager_ptr);
758  return meshsets_manager_ptr;
759 }
760 
762  MeshsetsManager *meshsets_manager_ptr;
763  getInterface(meshsets_manager_ptr);
764  return meshsets_manager_ptr;
765 }
766 
767 } // namespace MoFEM
MoFEMErrorCode initialiseDatabaseFromMesh(int verb=0)
Tag th_ProblemNbDofsCol
Definition: Core.hpp:209
static const MOFEMuuid IDD_MOFEMSeriesRecorder
DofEntity_multiIndex dofsField
dofs on fields
Definition: Core.hpp:249
MoFEMErrorCode clearMap()
Cleaning database.
Definition: Core.cpp:245
static const MOFEMuuid IDD_MOFEMCoreInterface
Definition: Interface.hpp:24
Tag th_FieldSpace
Definition: Core.hpp:204
MoFEM interface unique ID.
int sIze
MoFEM communicator size.
Definition: Core.hpp:861
MoFEMErrorCode initialiseDatabaseFromMesh(int verb=DEFAULT_VERBOSITY)
Initialize database getting information on mesh.
Definition: Core.cpp:573
Tag th_FieldName_DataNamePrefix
Definition: Core.hpp:204
static const MOFEMuuid IDD_MOFEMMeshsetsManager
PetscLogEvent MOFEM_EVENT_postProcess
Event for postProcess finite element.
Definition: Core.hpp:849
boost::shared_ptr< WrapMPIComm > wrapMPIComm
Definition: Core.hpp:897
static const MOFEMuuid IDD_MOFEMProblemsManager
multi_index_container< boost::shared_ptr< RefElement >, indexed_by< ordered_unique< tag< Ent_mi_tag >, const_mem_fun< RefElement::interface_type_RefEntity, EntityHandle, &RefElement::getRefEnt > >, ordered_non_unique< tag< EntType_mi_tag >, const_mem_fun< RefElement::interface_type_RefEntity, EntityType, &RefElement::getEntType > > > > RefElement_multiIndex
MPI_Comm cOmm
MoFEM communicator.
Definition: Core.hpp:858
int * fShift
Ptr to tag handle storing last set bit in field ID.
Definition: Core.hpp:901
Tag th_FEIdCol
Definition: Core.hpp:207
RefEntity_multiIndex refinedEntities
refined entities
Definition: Core.hpp:244
Provide data structure for (tensor) field approximation.The Field is intended to provide support for ...
FieldEntity_multiIndex entsFields
entities on fields
Definition: Core.hpp:248
MoFEMErrorCode rebuild_database(int verb=DEFAULT_VERBOSITY)
Clear database and initialize it once again.
Definition: Core.cpp:504
moab::Interface & get_moab()
Definition: Core.hpp:266
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:499
MoFEMErrorCode regSubInterface(const MOFEMuuid &uid)
Definition: Core.cpp:85
PetscLogEvent MOFEM_EVENT_operator
Event for evaluating operator of finite element.
Definition: Core.hpp:847
keeps data about abstract PRISM finite element
base class for all interface classes
multi_index_container< boost::shared_ptr< FieldEntity >, indexed_by< ordered_unique< tag< Unique_mi_tag >, member< FieldEntity, UId, &FieldEntity::globalUId > >, ordered_non_unique< tag< FieldName_mi_tag >, const_mem_fun< FieldEntity::interface_type_Field, boost::string_ref, &FieldEntity::getNameRef > >, ordered_non_unique< tag< Ent_mi_tag >, const_mem_fun< FieldEntity, EntityHandle, &FieldEntity::getEnt > >, ordered_non_unique< tag< Composite_Name_And_Ent_mi_tag >, composite_key< FieldEntity, const_mem_fun< FieldEntity::interface_type_Field, boost::string_ref, &FieldEntity::getNameRef >, const_mem_fun< FieldEntity, EntityHandle, &FieldEntity::getEnt > > > > > FieldEntity_multiIndex
MultiIndex container keeps FieldEntity.
Tag th_RefParentHandle
Definition: Core.hpp:201
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:475
static const MOFEMuuid IDD_MOFEMUnknown
IFACE getInterface() const
Get interface pointer to pointer of interface.
MoFEMErrorCode set_moab_interface(moab::Interface &new_moab, int verb=VERBOSE, const bool distributed_mesh=true)
Set the moab interface object.
Definition: Core.cpp:514
Tag th_ProblemFEId
Definition: Core.hpp:208
#define CHKERRG(n)
Check error code of MoFEM/MOAB/PETSc function.
Definition: definitions.h:542
multi_index_container< boost::shared_ptr< Field >, indexed_by< hashed_unique< tag< BitFieldId_mi_tag >, const_mem_fun< Field, const BitFieldId &, &Field::getId >, HashBit< BitFieldId >, EqBit< BitFieldId > >, ordered_unique< tag< Meshset_mi_tag >, member< Field, EntityHandle, &Field::meshSet > >, ordered_unique< tag< FieldName_mi_tag >, const_mem_fun< Field, boost::string_ref, &Field::getNameRef > >, ordered_non_unique< tag< BitFieldId_space_mi_tag >, const_mem_fun< Field, FieldSpace, &Field::getSpace > > > > Field_multiIndex
Field_multiIndex for Field.
MoFEMErrorCode get_fields(const Field_multiIndex **fields_ptr) const
Get fields multi-index from database.
Definition: Core.cpp:702
static const MOFEMuuid IDD_MOFEMBitRefManager
MoFEMErrorCode list_finite_elements() const
list finite elements in database
Definition: FECore.cpp:311
BitIntefaceId uUId
PetscLogEvent MOFEM_EVENT_createMat
Definition: Core.hpp:850
static const MOFEMuuid IDD_MOFEMNodeMerger
Definition: NodeMerger.hpp:23
Tag th_FieldShift
Definition: Core.hpp:212
Interface for managing meshsets containing materials and boundary conditions.
MoFEMErrorCode build_finite_elements(int verb=DEFAULT_VERBOSITY)
Build finite elementsBuild finite element data structures. Have to be run before problem and adjacenc...
Definition: FECore.cpp:793
static const MOFEMuuid IDD_MOFEMVEC
Definition: VecManager.hpp:26
Tag th_Part
Tag for partition number.
Definition: Core.hpp:200
std::bitset< BITPROBLEMID_SIZE > BitProblemId
Problem Id.
Definition: Types.hpp:55
Core(moab::Interface &moab, MPI_Comm comm=PETSC_COMM_WORLD, const int verbose=VERBOSE, const bool distributed_mesh=true)
Definition: Core.cpp:106
static const MOFEMuuid IDD_MOFEMPrismsFromSurface
Tag th_FEName
Definition: Core.hpp:206
Tag th_ElemType
Needed for VTK files.
Definition: Core.hpp:213
MoFEMErrorCode registerSubInterfaces()
Register insterfaces.
Definition: Core.cpp:189
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:506
BitProblemId getProblemShift()
Return unique problem Id.
Definition: Core.cpp:240
std::reference_wrapper< moab::Interface > moab
moab database
Definition: Core.hpp:265
keeps basic data about problemThis is low level structure with information about problem,...
PetscLogEvent MOFEM_EVENT_preProcess
Event for preProcess finite element.
Definition: Core.hpp:845
MoFEMErrorCode list_fields() const
list entities in the field
Definition: FieldCore.cpp:907
implementation of Data Operators for Forces and Sources
Definition: Common.hpp:21
static const MOFEMuuid IDD_MOFEMSimple
Definition: Simple.hpp:27
virtual const MoFEMErrorCode getFileVersion(moab::Interface &moab, Version &version) const
Get database major version.
FieldSpace in [ 0, LASTSPACE )
Definition: definitions.h:173
MoFEMErrorCode get_ref_finite_elements(const RefElement_multiIndex **refined_finite_elements_ptr) const
Get ref finite elements multi-index form database.
Definition: Core.cpp:714
MoFEMErrorCode getTags(int verb=-1)
get tags handlers used on meshsets
static auto get_sub_iface_options_imp(T *const ptr, int) -> decltype(ptr->getSubInterfaceOptions())
Definition: Core.cpp:72
std::bitset< BITREFEDGES_SIZE > BitRefEdges
Definition: Types.hpp:45
static MoFEMErrorCode Initialize(int *argc, char ***args, const char file[], const char help[])
Initializes the MoFEM database PETSc, MOAB and MPI.
Definition: Core.cpp:51
MoFEMErrorCode getTags(int verb=-1)
get tags handlers used on meshsets
MoFEMErrorCode addPrismToDatabase(const EntityHandle prism, int verb=DEFAULT_VERBOSITY)
add prim element
Definition: Core.cpp:265
MoFEMErrorCode clear_database(int verb=DEFAULT_VERBOSITY)
Clear database.
Definition: Core.cpp:496
Tag th_FieldId
Definition: Core.hpp:204
static MoFEMErrorCodeGeneric< moab::ErrorCode > rval
Definition: Exceptions.hpp:84
Tag th_RefBitEdge
Definition: Core.hpp:201
std::bitset< BITFEID_SIZE > BitFEId
Finite element Id.
Definition: Types.hpp:54
Tag th_ProblemName
Definition: Core.hpp:208
PetscBool initaliseAndBuildField
Definition: Core.hpp:915
Tag th_ProblemGhostNbDofCol
Definition: Core.hpp:211
Tag th_ProblemId
Definition: Core.hpp:208
int rAnk
MOFEM communicator rank.
Definition: Core.hpp:862
Tag th_RefType
Definition: Core.hpp:203
Tag th_ProblemNbDofsRow
Definition: Core.hpp:209
MoFEMErrorCode initialiseDatabaseFromMesh(int verb=0)
MoFEMErrorCode getCoordSysPtr(const EntityHandle id, boost::shared_ptr< CoordSys > &cs_ptr)
get coordinate system by id
BitFEId getFEShift()
Return unique finite element Id.
Definition: Core.cpp:235
FieldApproximationBase
approximation base
Definition: definitions.h:141
Tag th_ProblemGhostNbDofRow
Definition: Core.hpp:210
Finite element definition.
MoFEMErrorCode getTags(int verb=-1)
get tags handlers used on meshsets conating information about coordinate systems
static const MOFEMuuid IDD_MOFEMMeshRefine
MoFEMErrorCode getOptions(int verb=DEFAULT_VERBOSITY)
Get core options from command line.
Definition: Core.cpp:548
void macro_is_deprecated_using_deprecated_function()
Is used to indicate that macro is deprecated Do nothing just triggers error at the compilation.
Definition: Core.cpp:20
MoFEMErrorCode build_fields(int verb=DEFAULT_VERBOSITY)
Definition: FieldCore.cpp:876
int * buildMoFEM
keeps flags/semaphores for different stages
Definition: Core.hpp:910
multi_index_container< boost::shared_ptr< DofEntity >, indexed_by< ordered_unique< tag< Unique_mi_tag >, member< DofEntity, UId, &DofEntity::globalUId > >, ordered_non_unique< tag< Composite_Name_And_Ent_And_EntDofIdx_mi_tag >, composite_key< DofEntity, const_mem_fun< DofEntity::interface_type_Field, boost::string_ref, &DofEntity::getNameRef >, const_mem_fun< DofEntity, EntityHandle, &DofEntity::getEnt >, const_mem_fun< DofEntity, DofIdx, &DofEntity::getEntDofIdx > > >, ordered_non_unique< tag< Unique_Ent_mi_tag >, const_mem_fun< DofEntity, const UId &, &DofEntity::getEntGlobalUniqueId > >, ordered_non_unique< tag< FieldName_mi_tag >, const_mem_fun< DofEntity::interface_type_Field, boost::string_ref, &DofEntity::getNameRef > >, ordered_non_unique< tag< Ent_mi_tag >, const_mem_fun< DofEntity, EntityHandle, &DofEntity::getEnt > >, ordered_non_unique< tag< Composite_Name_And_Ent_mi_tag >, composite_key< DofEntity, const_mem_fun< DofEntity::interface_type_Field, boost::string_ref, &DofEntity::getNameRef >, const_mem_fun< DofEntity, EntityHandle, &DofEntity::getEnt > > >, ordered_non_unique< tag< Composite_Name_And_Type_mi_tag >, composite_key< DofEntity, const_mem_fun< DofEntity::interface_type_Field, boost::string_ref, &DofEntity::getNameRef >, const_mem_fun< DofEntity::interface_type_RefEntity, EntityType, &DofEntity::getEntType > > > > > DofEntity_multiIndex
MultiIndex container keeps DofEntity.
CHKERRQ(ierr)
Tag th_FieldBase
Definition: Core.hpp:204
#define BITFIELDID_SIZE
max number of fields
Definition: definitions.h:278
PetscErrorCode MoFEMErrorCode
MoFEM/PETSc error code.
Definition: Exceptions.hpp:66
FieldEntityEntFiniteElementAdjacencyMap_multiIndex entFEAdjacencies
adjacencies of elements to dofs
Definition: Core.hpp:255
Tag th_MoFEMBuild
Definition: Core.hpp:214
RefElement_multiIndex refinedFiniteElements
refined elements
Definition: Core.hpp:245
int * feShift
Ptr to tag handle storing last set bit in finite element ID.
Definition: Core.hpp:902
MeshsetsManager * get_meshsets_manager_ptr()
get MeshsetsManager pointer
Definition: Core.cpp:755
MoFEMErrorCode get_ref_ents(const RefEntity_multiIndex **refined_entities_ptr) const
Get ref entities multi-index from database.
Definition: Core.cpp:709
Tag th_ProblemLocalNbDofRow
Definition: Core.hpp:210
FiniteElement_multiIndex finiteElements
finite elements
Definition: Core.hpp:251
Problem_multiIndex pRoblems
problems multi-index
Definition: Core.hpp:257
MoFEMErrorCode getTags(int verb=DEFAULT_VERBOSITY)
Get tag handles.
Definition: Core.cpp:294
static const MOFEMuuid IDD_MOFEMTools
Definition: Tools.hpp:23
multi_index_container< Problem, indexed_by< ordered_unique< tag< Meshset_mi_tag >, member< Problem, EntityHandle, &Problem::meshset > >, hashed_unique< tag< BitProblemId_mi_tag >, const_mem_fun< Problem, BitProblemId, &Problem::getId >, HashBit< BitProblemId >, EqBit< BitProblemId > >, hashed_unique< tag< Problem_mi_tag >, const_mem_fun< Problem, std::string, &Problem::getName > > > > Problem_multiIndex
MultiIndex for entities for Problem.
Tag th_ProblemLocalNbDofCol
Definition: Core.hpp:211
static bool isGloballyInitialised
Core base globally initialized.
Definition: Core.hpp:911
MoFEMErrorCode list_problem() const
list problems
Tag th_FieldName
Definition: Core.hpp:204
FieldSpace
approximation spaces
Definition: definitions.h:166
Tag th_FEShift
Definition: Core.hpp:212
MoFEMErrorCode get_field_ents(const FieldEntity_multiIndex **field_ents) const
Get field multi index.
Definition: Core.cpp:744
static const MOFEMuuid IDD_MOFEMTetGegInterface
std::bitset< BITFIELDID_SIZE > BitFieldId
Field Id.
Definition: Types.hpp:53
#define CHKERR
Inline error check.
Definition: definitions.h:594
PetscBool initaliseAndBuildFiniteElements
Definition: Core.hpp:918
Field_multiIndex fIelds
fields
Definition: Core.hpp:247
int * pShift
Ptr to tag handle storing last set bit in problem ID.
Definition: Core.hpp:903
static const MOFEMuuid IDD_MOFEMCutMesh
static const MOFEMuuid IDD_MOFEMMatrixManager
static const MOFEMuuid IDD_MOFEMCoordsSystemsManager
static char help[]
boost::shared_ptr< BasicEntityData > basicEntityDataPtr
Definition: Core.hpp:225
#define MYPCOMM_INDEX
default communicator number PCOMM
Definition: definitions.h:283
std::bitset< BITREFLEVEL_SIZE > BitRefLevel
Bit structure attached to each entity identifying to what mesh entity is attached.
Definition: Types.hpp:51
MoFEMErrorCode get_problem(const std::string &problem_name, const Problem **problem_ptr) const
Get problem database (data structure)
Definition: Core.cpp:721
static PetscErrorCode mofem_error_handler(MPI_Comm comm, int line, const char *fun, const char *file, PetscErrorCode n, PetscErrorType p, const char *mess, void *ctx)
multi_index_container< boost::shared_ptr< RefEntity >, indexed_by< ordered_unique< tag< Ent_mi_tag >, member< RefEntity::BasicEntity, EntityHandle, &RefEntity::ent > >, ordered_non_unique< tag< Ent_Ent_mi_tag >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getParentEnt > >, ordered_non_unique< tag< EntType_mi_tag >, const_mem_fun< RefEntity::BasicEntity, EntityType, &RefEntity::getEntType > >, ordered_non_unique< tag< ParentEntType_mi_tag >, const_mem_fun< RefEntity, EntityType, &RefEntity::getParentEntType > >, ordered_non_unique< tag< Composite_EntType_and_ParentEntType_mi_tag >, composite_key< RefEntity, const_mem_fun< RefEntity::BasicEntity, EntityType, &RefEntity::getEntType >, const_mem_fun< RefEntity, EntityType, &RefEntity::getParentEntType > > >, ordered_non_unique< tag< Composite_ParentEnt_And_EntType_mi_tag >, composite_key< RefEntity, const_mem_fun< RefEntity::BasicEntity, EntityType, &RefEntity::getEntType >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getParentEnt > > > > > RefEntity_multiIndex
MoFEMErrorCode get_problems(const Problem_multiIndex **problems_ptr) const
Get pointer to problems multi-index.
Definition: Core.cpp:737
MoFEMErrorCode set_field_order(const Range &ents, const BitFieldId id, const ApproximationOrder order, int verb=DEFAULT_VERBOSITY)
Definition: FieldCore.cpp:314
static const MOFEMuuid IDD_MOFEMFieldBlas
Definition: FieldBlas.hpp:26
MoFEMErrorCode get_dofs(const DofEntity_multiIndex **dofs_ptr) const
Get dofs multi index.
Definition: Core.cpp:749
Tag th_ProblemShift
Definition: Core.hpp:212
ParallelComm * pComm
MOAB communicator structure.
Definition: Core.hpp:859
int verbose
Verbosity level.
Definition: Core.hpp:899
Tag th_RefBitLevel_Mask
Definition: Core.hpp:201
Tag th_FEId
Definition: Core.hpp:206
MoFEMErrorCode initialiseDatabaseFromMesh(int verb=0)
boost::ptr_map< unsigned long, UnknownInterface > iFaces
Hash map of pointers to interfaces.
Definition: Core.hpp:908
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:405
static const MOFEMuuid IDD_MOFEMISManager
Definition: ISManager.hpp:26
std::string optionsPrefix
Prefix for options on command line.
Definition: Core.hpp:913
Tag th_RefBitLevel
Definition: Core.hpp:201
EntFiniteElement_multiIndex entsFiniteElements
finite element entities
Definition: Core.hpp:252
static const MOFEMuuid IDD_MOFEMDeprecatedCoreInterface
Definition: Interface.hpp:26
static const MOFEMuuid IDD_MOFEMPrismInterface
Tag th_FEIdData
Definition: Core.hpp:207
#define NOT_USED(x)
Definition: definitions.h:301
DEPRECATED IFace * query_interface() const
static const MOFEMuuid IDD_MOFEMMedInterface
BitFieldId getFieldShift()
Return unique field Id.
Definition: Core.cpp:223
static const MOFEMuuid IDD_MOFEMBitLevelCoupler
Tag th_FEIdRow
Definition: Core.hpp:207
static MoFEMErrorCode Finalize()
Checks for options to be called at the conclusion of the program.
Definition: Core.cpp:61