v0.13.1
Core.cpp
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1/** \file Core.cpp
2 * \brief Multi-index containers, data structures and other low-level functions
3 */
4
5/* MoFEM is free software: you can redistribute it and/or modify it under
6 * the terms of the GNU Lesser General Public License as published by the
7 * Free Software Foundation, either version 3 of the License, or (at your
8 * option) any later version.
9 *
10 * MoFEM is distributed in the hope that it will be useful, but WITHOUT
11 * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
12 * FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public
13 * License for more details.
14 *
15 * You should have received a copy of the GNU Lesser General Public
16 * License along with MoFEM. If not, see <http://www.gnu.org/licenses/>
17 */
18
19#include <MoFEM.hpp>
20
21#include "impl/ErrorHandler.cpp"
22
23extern "C" {
25}
26
27namespace MoFEM {
28
29WrapMPIComm::WrapMPIComm(MPI_Comm comm, bool petsc)
30 : comm(comm), isPetscComm(petsc) {
31 if (isPetscComm) {
32 ierr = PetscCommDuplicate(comm, &duplicatedComm, NULL);
33 CHKERRABORT(comm, ierr);
34 } else {
35 int ierr = MPI_Comm_dup(comm, &duplicatedComm);
36 if (ierr) {
37 THROW_MESSAGE("MPI_Comm_dup not working");
38 }
39 }
40}
42 if (isPetscComm) {
43 ierr = PetscCommDestroy(&duplicatedComm);
44 CHKERRABORT(comm, ierr);
45 } else {
46 int ierr = MPI_Comm_free(&duplicatedComm);
47 if (ierr) {
48 CHKERRABORT(comm, MOFEM_DATA_INCONSISTENCY);
49 }
50 }
51}
52
53constexpr const int CoreTmp<0>::value;
54constexpr const int CoreTmp<-1>::value;
55
56MoFEMErrorCode Core::query_interface(boost::typeindex::type_index type_index,
57 UnknownInterface **iface) const {
59 *iface = NULL;
60 if (type_index == boost::typeindex::type_id<CoreInterface>()) {
61 *iface = static_cast<CoreInterface *>(const_cast<Core *>(this));
63 } else if (type_index ==
64 boost::typeindex::type_id<DeprecatedCoreInterface>()) {
65 *iface = static_cast<DeprecatedCoreInterface *>(const_cast<Core *>(this));
67 }
68
69 // Get sub-interface
70 auto it = iFaces.find(type_index);
71 if (it != iFaces.end()) {
72 *iface = it->second;
74 }
75
76 *iface = NULL;
77 SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY, "unknown interface");
79}
80
83PetscBool Core::isInitialized;
84
85MoFEMErrorCode Core::Initialize(int *argc, char ***args, const char file[],
86 const char help[]) {
87
88 MPI_Initialized(&mpiInitialised);
89 if (!mpiInitialised)
90 MPI_Init(argc, args);
91
92 PetscInitialized(&isInitialized);
93 if (isInitialized == PETSC_FALSE) {
94 PetscInitialize(argc, args, file, help);
95 PetscPushErrorHandler(mofem_error_handler, PETSC_NULL);
96 }
97
98 LogManager::createDefaultSinks(MPI_COMM_WORLD);
99 PetscVFPrintf = LogManager::logPetscFPrintf;
101 isGloballyInitialised = true;
102
103 MOFEM_LOG_CHANNEL("WORLD");
104 char petsc_version[255];
105 CHKERR PetscGetVersion(petsc_version, 255);
106 MOFEM_LOG_C("WORLD", Sev::inform, "MoFEM version %d.%d.%d (%s %s)",
107 MoFEM_VERSION_MAJOR, MoFEM_VERSION_MINOR, MoFEM_VERSION_BUILD,
108 MOAB_VERSION_STRING, petsc_version);
109 MOFEM_LOG_C("WORLD", Sev::inform, "git commit id %s", GIT_SHA1_NAME);
110
111 auto log_time = [&](const auto perefix, auto time) {
112 MOFEM_LOG("WORLD", Sev::inform)
113 << perefix << time.date().year() << "-" << time.date().month() << "-"
114 << time.date().day() << " " << time.time_of_day().hours() << ":"
115 << time.time_of_day().minutes() << ":" << time.time_of_day().seconds();
116 };
117
118 // Get current system time
119 log_time("Local time: ", boost::posix_time::second_clock::local_time());
120 log_time("UTC time: ", boost::posix_time::second_clock::universal_time());
121
122 return MOFEM_SUCCESS;
123}
124
126 if (isGloballyInitialised) {
127 PetscPopErrorHandler();
128 isGloballyInitialised = false;
129
130 if (isInitialized == PETSC_FALSE) {
131 PetscBool is_finalized;
132 PetscFinalized(&is_finalized);
133 if (!is_finalized)
134 PetscFinalize();
135 }
136
137 if (!mpiInitialised) {
138 int mpi_finalized;
139 MPI_Finalized(&mpi_finalized);
140 if (!mpi_finalized)
141 MPI_Finalize();
142 }
143 }
144
145 return 0;
146}
147
148// Use SFINAE to decide which template should be run,
149// if exist getSubInterfaceOptions run this one.
150template <class T>
151static auto get_sub_iface_options_imp(T *const ptr, int)
152 -> decltype(ptr->getSubInterfaceOptions()) {
153 return ptr->getSubInterfaceOptions();
154};
155
156// Use SFINAE to decide which template should be run,
157// if getSubInterfaceOptions not exist run this one.
158template <class T>
159static auto get_sub_iface_options_imp(T *const ptr, long) -> MoFEMErrorCode {
160 return 0;
161};
162
163template <class IFACE> MoFEMErrorCode Core::regSubInterface() {
165 CHKERR registerInterface<IFACE>(true);
166 IFACE *ptr = new IFACE(*this);
167
168 // If sub interface has function getSubInterfaceOptions run
169 // it after construction. getSubInterfaceOptions is used to
170 // get parameters from command line.
171 // See SFINAE:
172 // https://stackoverflow.com/questions/257288/is-it-possible-to-write-a-template-to-check-for-a-functions-existence
173 // https://en.wikipedia.org/wiki/Substitution_failure_is_not_an_error
174 auto get_sub_iface_options = [](auto *const ptr) {
175 return get_sub_iface_options_imp(ptr, 0);
176 };
177 CHKERR get_sub_iface_options(ptr);
178
179 auto type_idx = boost::typeindex::type_id<IFACE>();
180 iFaces.insert(type_idx, ptr);
182}
183
185 MPI_Comm comm, const int verbose) {
187
188 // This is deprecated ONE should use MoFEM::Core::Initialize
189 if (!isGloballyInitialised)
190 SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
191 "MoFEM globally is not initialised, call MoFEM::Core::Initialize");
192
193 // Create duplicate communicator
194 wrapMPIMOABComm = boost::make_shared<WrapMPIComm>(comm, false);
195
196 MPI_Comm_size(mofemComm, &sIze);
197 MPI_Comm_rank(mofemComm, &rAnk);
198
199 // CHeck if moab has set communicator if not set communicator interbally
200 ParallelComm *pComm = ParallelComm::get_pcomm(&moab, MYPCOMM_INDEX);
201 if (pComm == NULL)
202 pComm = new ParallelComm(&moab, wrapMPIMOABComm->get_comm());
203
204 // Register interfaces for this implementation
205 CHKERR registerInterface<UnknownInterface>();
206 CHKERR registerInterface<CoreInterface>();
207 CHKERR registerInterface<DeprecatedCoreInterface>();
208
209 // Register MOFEM events in PETSc
210 PetscLogEventRegister("FE_preProcess", 0, &MOFEM_EVENT_preProcess);
211 PetscLogEventRegister("FE_operator", 0, &MOFEM_EVENT_operator);
212 PetscLogEventRegister("FE_postProcess", 0, &MOFEM_EVENT_postProcess);
213 PetscLogEventRegister("MoFEMCreateMat", 0, &MOFEM_EVENT_createMat);
214
215 MOFEM_LOG_CHANNEL("WORLD");
216 MOFEM_LOG_CHANNEL("SELF");
217 MOFEM_LOG_CHANNEL("SYNC");
218
220}
221
222Core::CoreTmp(moab::Interface &moab, ///< MoAB interface
223 MPI_Comm comm, ///< MPI communicator
224 const int verbose ///< Verbosity level
225
226 )
227 : CoreTmp(moab, comm, verbose, CoreValue<0>()) {
228
229 // Register sub-interfaces
230 ierr = this->registerSubInterfaces();
231 CHKERRABORT(comm, ierr);
232 ierr = this->clearMap();
233 CHKERRABORT(comm, ierr);
234 ierr = this->getTags();
235 CHKERRABORT(comm, ierr);
236 ierr = this->getOptions(verbose);
237 CHKERRABORT(comm, ierr);
238
239 this->basicEntityDataPtr = boost::make_shared<BasicEntityData>(moab);
240 setRefEntBasicDataPtr(*this, this->basicEntityDataPtr);
241
242 ierr = this->initialiseDatabaseFromMesh(verbose);
243 CHKERRABORT(comm, ierr);
244}
245
246CoreTmp<-1>::CoreTmp(moab::Interface &moab, ///< MoAB interface
247 MPI_Comm comm, ///< MPI communicator
248 const int verbose ///< Verbosity level
249
250 )
251 : CoreTmp<0>(moab, comm, verbose, CoreValue<-1>()) {
252
253 // Register sub-interfaces
254 ierr = this->registerSubInterfaces();
255 CHKERRABORT(comm, ierr);
256 ierr = this->clearMap();
257 CHKERRABORT(comm, ierr);
258 ierr = this->getTags();
259 CHKERRABORT(comm, ierr);
260 ierr = this->getOptions(verbose);
261 CHKERRABORT(comm, ierr);
262
263 this->basicEntityDataPtr = boost::make_shared<BasicEntityData>(moab);
264 setRefEntBasicDataPtr(*this, this->basicEntityDataPtr);
265
266 ierr = this->initialiseDatabaseFromMesh(verbose);
267 CHKERRABORT(comm, ierr);
268}
269
271 PetscBool is_finalized;
272 PetscFinalized(&is_finalized);
273 // Destroy interfaces
274 iFaces.clear();
275 // This is deprecated ONE should use MoFEM::Core::Initialize
276 if (isGloballyInitialised && is_finalized) {
277 isGloballyInitialised = false;
278 }
279}
280
282 MOFEM_LOG_CHANNEL("WORLD");
284 if (verb == -1)
285 verb = verbose;
286
287 Range ref_elems_to_add;
288
289 auto m_moab = &get_moab();
290
291 // Initialize database
292 Range meshsets;
293 CHKERR get_moab().get_entities_by_type(0, MBENTITYSET, meshsets, false);
294 Range special_meshsets;
295 for (auto mit : meshsets) {
296 BitFieldId field_id;
297 // Get bit id form field tag
298 CHKERR get_moab().tag_get_data(th_FieldId, &mit, 1, &field_id);
299 // Check if meshset if field meshset
300 if (field_id != 0) {
301
302 const void *tag_name;
303 int tag_name_size;
304 CHKERR get_moab().tag_get_by_ptr(
305 th_FieldName, &mit, 1, (const void **)&tag_name, &tag_name_size);
306
307 if (verb > QUIET)
308 MOFEM_LOG("WORLD", Sev::verbose)
309 << "Read field "
310 << boost::string_ref((char *)tag_name, tag_name_size);
311
312 auto p = fIelds.insert(boost::make_shared<Field>(moab, mit));
313
314 if (!p.second) {
315 // Field meshset exists, remove duplicate meshsets from other
316 // processors.
317 Range ents;
318 CHKERR get_moab().get_entities_by_handle(mit, ents, true);
319 CHKERR get_moab().add_entities((*p.first)->getMeshset(), ents);
320 CHKERR get_moab().delete_entities(&mit, 1);
321 } else {
322 special_meshsets.insert(mit);
323 }
324 }
325 // Check for finite elements
326 BitFieldId fe_id;
327 // Get bit id from fe tag
328 CHKERR get_moab().tag_get_data(th_FEId, &mit, 1, &fe_id);
329 // check if meshset is finite element meshset
330 if (fe_id != 0) {
331 std::pair<FiniteElement_multiIndex::iterator, bool> p =
332 finiteElements.insert(
333 boost::shared_ptr<FiniteElement>(new FiniteElement(moab, mit)));
334 if (verb > QUIET)
335 MOFEM_LOG("WORLD", Sev::verbose) << "Read finite element " << **p.first;
336
337 Range ents;
338 CHKERR get_moab().get_entities_by_type(mit, MBENTITYSET, ents, false);
339 CHKERR get_moab().get_entities_by_handle(mit, ents, true);
340 ref_elems_to_add.merge(ents);
341 if (!p.second) {
342 // Finite element mesh set exist, could be created on other processor.
343 // Remove duplicate.
344 CHKERR get_moab().add_entities((*p.first)->getMeshset(), ents);
345 CHKERR get_moab().delete_entities(&mit, 1);
346 } else {
347 special_meshsets.insert(mit);
348 }
349 }
350 BitProblemId problem_id;
351 // get bit id form problem tag
352 CHKERR get_moab().tag_get_data(th_ProblemId, &mit, 1, &problem_id);
353 // check if meshset if problem meshset
354 if (problem_id != 0) {
355 std::pair<Problem_multiIndex::iterator, bool> p =
356 pRoblems.insert(Problem(moab, mit));
357 if (verb > QUIET) {
358 MOFEM_LOG("WORLD", Sev::verbose) << "Read problem " << *p.first;
359 MOFEM_LOG("WORLD", Sev::noisy)
360 << "\tBitRef " << p.first->getBitRefLevel() << " BitMask "
361 << p.first->getBitRefLevelMask();
362 }
363
364 if (!p.second) {
365 // Problem meshset exists, could be created on other processor.
366 // Remove duplicate.
367 Range ents;
368 CHKERR get_moab().get_entities_by_handle(mit, ents, true);
369 CHKERR get_moab().get_entities_by_type(mit, MBENTITYSET, ents, true);
370 CHKERR get_moab().add_entities(p.first->meshset, ents);
371 CHKERR get_moab().delete_entities(&mit, 1);
372 } else {
373 special_meshsets.insert(mit);
374 }
375 }
376 }
377
378 // Add entities to database
379 Range bit_ref_ents;
380 CHKERR get_moab().get_entities_by_handle(0, bit_ref_ents, false);
381 bit_ref_ents = subtract(bit_ref_ents, special_meshsets);
382 CHKERR getInterface<BitRefManager>()->filterEntitiesByRefLevel(
383 BitRefLevel().set(), BitRefLevel().set(), bit_ref_ents);
384 CHKERR getInterface<BitRefManager>()->setEntitiesBitRefLevel(bit_ref_ents);
385 CHKERR getInterface<BitRefManager>()->setElementsBitRefLevel(
386 ref_elems_to_add);
387
388 // Build field entities
389 for (auto field : fIelds) {
390 if (field->getSpace() != NOSPACE) {
391 Range ents_of_id_meshset;
392 CHKERR get_moab().get_entities_by_handle(field->getMeshset(),
393 ents_of_id_meshset, false);
394 CHKERR set_field_order(ents_of_id_meshset, field->getId(), -1, verb);
395 }
396 }
397
398 if (initaliseAndBuildField || initaliseAndBuildFiniteElements) {
399 CHKERR build_fields(verb);
400 if (initaliseAndBuildFiniteElements) {
401 CHKERR build_finite_elements(verb);
402 }
403 }
404
405 if (verb > VERY_NOISY) {
406 list_fields();
407 list_finite_elements();
408 list_problem();
409 }
410
411 // Initialize interfaces
412 MeshsetsManager *m_manger_ptr;
413 CHKERR getInterface(m_manger_ptr);
414 CHKERR m_manger_ptr->initialiseDatabaseFromMesh(verb);
415 SeriesRecorder *series_recorder_ptr;
416 CHKERR getInterface(series_recorder_ptr);
417 CHKERR series_recorder_ptr->initialiseDatabaseFromMesh(verb);
418
420}
421
424 if (verb == -1)
425 verb = verbose;
426
427 // clear moab database
428 CHKERR clearMap();
429
430 // set new reference
431 moab = std::ref(new_moab);
432
433 // check if moab has set communicator if not set communicator internally
434 ParallelComm *pComm = ParallelComm::get_pcomm(&new_moab, MYPCOMM_INDEX);
435 if (pComm == NULL) {
436 pComm = new ParallelComm(&new_moab, wrapMPIMOABComm->get_comm());
437 }
438
439 // create MoFEM tags
440 CHKERR getTags();
441
442 // Create basic entity data struture
443 basicEntityDataPtr = boost::make_shared<BasicEntityData>(moab);
444 setRefEntBasicDataPtr(*this, this->basicEntityDataPtr);
445
446 // Initalise database
447 CHKERR this->initialiseDatabaseFromMesh(verb);
448
450};
451
454
455 iFaces.clear();
456
457 // Register sub interfaces
458 CHKERR regSubInterface<LogManager>();
459 CHKERR regSubInterface<Simple>();
460 CHKERR regSubInterface<PipelineManager>();
461 CHKERR regSubInterface<ProblemsManager>();
462 CHKERR regSubInterface<MatrixManager>();
463 CHKERR regSubInterface<ISManager>();
464 CHKERR regSubInterface<VecManager>();
465 CHKERR regSubInterface<FieldBlas>();
466 CHKERR regSubInterface<BitRefManager>();
467 CHKERR regSubInterface<Tools>();
468 CHKERR regSubInterface<CommInterface>();
469 CHKERR regSubInterface<MeshsetsManager>();
470 CHKERR regSubInterface<NodeMergerInterface>();
471 CHKERR regSubInterface<PrismsFromSurfaceInterface>();
472 CHKERR regSubInterface<MeshRefinement>();
473 CHKERR regSubInterface<PrismInterface>();
474 CHKERR regSubInterface<CutMeshInterface>();
475 CHKERR regSubInterface<SeriesRecorder>();
476#ifdef WITH_TETGEN
477 CHKERR regSubInterface<TetGenInterface>();
478#endif
479#ifdef WITH_MED
480 CHKERR regSubInterface<MedInterface>();
481#endif
482 CHKERR regSubInterface<FieldEvaluatorInterface>();
483 CHKERR regSubInterface<BcManager>();
484
486};
487
490 // Cleaning databases in interfaces
491 CHKERR getInterface<SeriesRecorder>()->clearMap();
492 CHKERR getInterface<MeshsetsManager>()->clearMap();
493 CHKERR getInterface<CutMeshInterface>()->clearMap();
494 // Cleaning databases
495 refinedEntities.clear();
496 refinedFiniteElements.clear();
497 fIelds.clear();
498 entsFields.clear();
499 dofsField.clear();
500 finiteElements.clear();
501 entsFiniteElements.clear();
502 entFEAdjacencies.clear();
503 pRoblems.clear();
505}
506
507MoFEMErrorCode Core::addPrismToDatabase(const EntityHandle prism, int verb) {
509 if (verb == -1)
510 verb = verbose;
511 std::pair<RefEntity_multiIndex::iterator, bool> p_ent;
512 p_ent = refinedEntities.insert(
513 boost::make_shared<RefEntity>(basicEntityDataPtr, prism));
514 if (p_ent.second) {
515 std::pair<RefElement_multiIndex::iterator, bool> p;
516 p = refinedFiniteElements.insert(
517 boost::shared_ptr<RefElement>(new RefElement_PRISM(*p_ent.first)));
518 int num_nodes;
519 const EntityHandle *conn;
520 CHKERR get_moab().get_connectivity(prism, conn, num_nodes, true);
521 Range face_side3, face_side4;
522 CHKERR get_moab().get_adjacencies(conn, 3, 2, false, face_side3);
523 CHKERR get_moab().get_adjacencies(&conn[3], 3, 2, false, face_side4);
524 if (face_side3.size() != 1)
525 SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
526 "prism don't have side face 3");
527 if (face_side4.size() != 1)
528 SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
529 "prims don't have side face 4");
530 p.first->get()->getSideNumberPtr(*face_side3.begin());
531 p.first->get()->getSideNumberPtr(*face_side4.begin());
532 }
534}
535
538
539 const EntityHandle root_meshset = get_moab().get_root_set();
540 if (root_meshset) {
541 SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
542 "Root meshset should be 0");
543 }
544
545 // Set version
546 {
547 Version version;
548 CHKERR getFileVersion(moab, version);
549 }
550
551 // Global Variables
552 {
553
554 auto check_tag_allocated = [](auto &rval) {
556 if (rval == MB_ALREADY_ALLOCATED)
557 rval = MB_SUCCESS;
558 else
559 CHKERRG(rval);
561 };
562
563 // Safety nets
564 int def_bool = 0;
565 rval = get_moab().tag_get_handle("_MoFEMBuild", 1, MB_TYPE_INTEGER,
566 th_MoFEMBuild, MB_TAG_CREAT | MB_TAG_MESH,
567 &def_bool);
568 CHKERR check_tag_allocated(rval);
569
570 CHKERR get_moab().tag_get_by_ptr(th_MoFEMBuild, &root_meshset, 1,
571 (const void **)&buildMoFEM);
572 }
573
574 // Tags saved in vtk-files
575 {
576 const int def_part = -1;
577 CHKERR get_moab().tag_get_handle("PARTITION", 1, MB_TYPE_INTEGER, th_Part,
578 MB_TAG_CREAT | MB_TAG_SPARSE, &def_part);
579 }
580
581 // Tags Ref
582 {
583 const int def_part = -1;
584 CHKERR get_moab().tag_get_handle("_MeshsetPartition", 1, MB_TYPE_INTEGER,
585 th_Part, MB_TAG_CREAT | MB_TAG_SPARSE,
586 &def_part);
587 EntityHandle def_handle = 0;
588 CHKERR get_moab().tag_get_handle("_RefParentHandle", 1, MB_TYPE_HANDLE,
589 th_RefParentHandle,
590 MB_TAG_CREAT | MB_TAG_SPARSE, &def_handle);
591 BitRefLevel def_bit_level = 0;
592 CHKERR get_moab().tag_get_handle(
593 "_RefBitLevel", sizeof(BitRefLevel), MB_TYPE_OPAQUE, th_RefBitLevel,
594 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_bit_level);
595 BitRefLevel def_bit_level_mask = BitRefLevel().set();
596 CHKERR get_moab().tag_get_handle(
597 "_RefBitLevelMask", sizeof(BitRefLevel), MB_TYPE_OPAQUE,
598 th_RefBitLevel_Mask, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
599 &def_bit_level_mask);
600 BitRefEdges def_bit_edge = 0;
601 CHKERR get_moab().tag_get_handle(
602 "_RefBitEdge", sizeof(BitRefEdges), MB_TYPE_OPAQUE, th_RefBitEdge,
603 MB_TAG_CREAT | MB_TAG_SPARSE | MB_TAG_BYTES, &def_bit_edge);
604 const int def_type[] = {0, 0};
605 CHKERR get_moab().tag_get_handle("_RefType", 2, MB_TYPE_INTEGER, th_RefType,
606 MB_TAG_CREAT | MB_TAG_SPARSE, def_type);
607 }
608
609 // Tags Field
610 {
611 const unsigned long int def_id = 0;
612 CHKERR get_moab().tag_get_handle(
613 "_FieldId", sizeof(BitFieldId), MB_TYPE_OPAQUE, th_FieldId,
614 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
615 FieldSpace def_space = LASTSPACE;
616 CHKERR get_moab().tag_get_handle(
617 "_FieldSpace", sizeof(FieldSpace), MB_TYPE_OPAQUE, th_FieldSpace,
618 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_space);
620 CHKERR get_moab().tag_get_handle(
621 "_FieldBase", sizeof(FieldApproximationBase), MB_TYPE_OPAQUE,
622 th_FieldBase, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_base);
623 const int def_val_len = 0;
624 CHKERR get_moab().tag_get_handle(
625 "_FieldName", def_val_len, MB_TYPE_OPAQUE, th_FieldName,
626 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_VARLEN | MB_TAG_SPARSE, NULL);
627 CHKERR get_moab().tag_get_handle(
628 "_FieldName_DataNamePrefix", def_val_len, MB_TYPE_OPAQUE,
629 th_FieldName_DataNamePrefix,
630 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_VARLEN | MB_TAG_SPARSE, NULL);
631 }
632
633 // Tags FE
634 {
635 const unsigned long int def_id = 0;
636 const int def_val_len = 0;
637 CHKERR get_moab().tag_get_handle(
638 "_FEId", sizeof(BitFEId), MB_TYPE_OPAQUE, th_FEId,
639 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
640 CHKERR get_moab().tag_get_handle(
641 "_FEName", def_val_len, MB_TYPE_OPAQUE, th_FEName,
642 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_VARLEN | MB_TAG_SPARSE, NULL);
643 CHKERR get_moab().tag_get_handle(
644 "_FEIdCol", sizeof(BitFieldId), MB_TYPE_OPAQUE, th_FEIdCol,
645 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
646 CHKERR get_moab().tag_get_handle(
647 "_FEIdRow", sizeof(BitFieldId), MB_TYPE_OPAQUE, th_FEIdRow,
648 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
649 CHKERR get_moab().tag_get_handle(
650 "_FEIdData", sizeof(BitFieldId), MB_TYPE_OPAQUE, th_FEIdData,
651 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
652 }
653
654 // Tags Problem
655 {
656 const unsigned long int def_id = 0;
657 const int def_val_len = 0;
658 CHKERR get_moab().tag_get_handle(
659 "_ProblemId", sizeof(BitProblemId), MB_TYPE_OPAQUE, th_ProblemId,
660 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
661 CHKERR get_moab().tag_get_handle(
662 "_ProblemFEId", sizeof(BitFEId), MB_TYPE_OPAQUE, th_ProblemFEId,
663 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
664 CHKERR get_moab().tag_get_handle(
665 "_ProblemName", def_val_len, MB_TYPE_OPAQUE, th_ProblemName,
666 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_VARLEN | MB_TAG_SPARSE, NULL);
667 DofIdx def_nbdofs = 0;
668 CHKERR get_moab().tag_get_handle(
669 "_ProblemNbDofsRow", sizeof(DofIdx), MB_TYPE_OPAQUE,
670 th_ProblemNbDofsRow, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
671 &def_nbdofs);
672 CHKERR get_moab().tag_get_handle(
673 "_ProblemNbDofsCol", sizeof(DofIdx), MB_TYPE_OPAQUE,
674 th_ProblemNbDofsCol, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
675 &def_nbdofs);
676 CHKERR get_moab().tag_get_handle(
677 "_ProblemLocalNbDofsRow", sizeof(DofIdx), MB_TYPE_OPAQUE,
678 th_ProblemLocalNbDofRow, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
679 &def_nbdofs);
680 CHKERR get_moab().tag_get_handle(
681 "_ProblemGhostNbDofsRow", sizeof(DofIdx), MB_TYPE_OPAQUE,
682 th_ProblemGhostNbDofRow, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
683 &def_nbdofs);
684 CHKERR get_moab().tag_get_handle(
685 "_ProblemLocalNbDofsCol", sizeof(DofIdx), MB_TYPE_OPAQUE,
686 th_ProblemLocalNbDofCol, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
687 &def_nbdofs);
688 CHKERR get_moab().tag_get_handle(
689 "_ProblemGhostNbDofsCol", sizeof(DofIdx), MB_TYPE_OPAQUE,
690 th_ProblemGhostNbDofCol, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
691 &def_nbdofs);
692 }
693
694 // Meshsets with boundary conditions and material sets
695 MeshsetsManager *meshsets_manager_ptr;
696 CHKERR getInterface(meshsets_manager_ptr);
697 CHKERR meshsets_manager_ptr->getTags(verb);
698
699 // Series recorder
700 SeriesRecorder *series_recorder_ptr;
701 CHKERR getInterface(series_recorder_ptr);
702 CHKERR series_recorder_ptr->getTags(verb);
703
705}
706
709 if (verb == -1)
710 verb = verbose;
711 CHKERR clearMap();
713}
714
717 if (verb == -1)
718 verb = verbose;
719 CHKERR this->clearMap();
720 CHKERR this->getTags(verb);
721 CHKERR this->initialiseDatabaseFromMesh(verb);
723}
724
726 return this->setMoabInterface(new_moab, verb);
727};
728
730 int verb) {
731 return this->setMoabInterface(new_moab, verb);
732};
733
736 if (verb == -1)
737 verb = verbose;
738
739 CHKERR PetscOptionsBegin(mofemComm, optionsPrefix.c_str(), "Mesh cut options",
740 "See MoFEM documentation");
741
742 CHKERR PetscOptionsBool(
743 "-mofem_init_fields", "Initialise fields on construction", "",
744 initaliseAndBuildField, &initaliseAndBuildField, NULL);
745
746 CHKERR PetscOptionsBool(
747 "-mofem_init_fields", "Initialise fields on construction", "",
748 initaliseAndBuildFiniteElements, &initaliseAndBuildFiniteElements, NULL);
749
750 // TODO: Add read verbosity level
751 // TODO: Add option to initalise problems ??? - DO WE REALLY NEED THAT
752
753 ierr = PetscOptionsEnd();
754 CHKERRG(ierr);
755
757}
758
759// cubit meshsets
760
763 *fields_ptr = &fIelds;
765}
766
768Core::get_ref_ents(const RefEntity_multiIndex **refined_entities_ptr) const {
770 *refined_entities_ptr = &refinedEntities;
772}
774 const RefElement_multiIndex **refined_finite_elements_ptr) const {
776 *refined_finite_elements_ptr = &refinedFiniteElements;
778}
779
780MoFEMErrorCode Core::get_problem(const std::string &problem_name,
781 const Problem **problem_ptr) const {
784 const ProblemsByName &problems = pRoblems.get<Problem_mi_tag>();
785 ProblemsByName::iterator p_miit = problems.find(problem_name);
786 if (p_miit == problems.end()) {
787 SETERRQ1(PETSC_COMM_SELF, MOFEM_OPERATION_UNSUCCESSFUL,
788 "problem < %s > not found, (top tip: check spelling)",
789 problem_name.c_str());
790 }
791 *problem_ptr = &*p_miit;
793}
794
796Core::get_problems(const Problem_multiIndex **problems_ptr) const {
798 *problems_ptr = &pRoblems;
800}
801
805 *field_ents = &entsFields;
807}
810 *dofs_ptr = &dofsField;
812}
813
817 *fe_ptr = &finiteElements;
819}
820
822 const EntFiniteElement_multiIndex **fe_ent_ptr) const {
824 *fe_ent_ptr = &entsFiniteElements;
826}
827
829 MeshsetsManager *meshsets_manager_ptr;
830 getInterface(meshsets_manager_ptr);
831 return meshsets_manager_ptr;
832}
833
835 MeshsetsManager *meshsets_manager_ptr;
836 getInterface(meshsets_manager_ptr);
837 return meshsets_manager_ptr;
838}
839
842 *dofs_elements_adjacency) const {
844 *dofs_elements_adjacency = &entFEAdjacencies;
846}
847
850 return &entFEAdjacencies;
851}
852
853const Field_multiIndex *Core::get_fields() const { return &fIelds; }
855 return &refinedEntities;
856}
858 return &refinedFiniteElements;
859}
861 return &finiteElements;
862}
864 return &entsFiniteElements;
865}
867 return &entsFields;
868}
869const DofEntity_multiIndex *Core::get_dofs() const { return &dofsField; }
870const Problem *Core::get_problem(const std::string problem_name) const {
871 const Problem *prb;
872 CHK_THROW_MESSAGE(get_problem(problem_name, &prb),
873 "Problem of given name not found");
874 return prb;
875}
876const Problem_multiIndex *Core::get_problems() const { return &pRoblems; }
877
878template <int V, typename std::enable_if<(V >= 0), int>::type * = nullptr>
879void set_ref_ent_basic_data_ptr_impl(boost::shared_ptr<BasicEntityData> &ptr) {
881};
882
883template <int V, typename std::enable_if<(V < 0), int>::type * = nullptr>
884void set_ref_ent_basic_data_ptr_impl(boost::shared_ptr<BasicEntityData> &ptr) {
885 return;
886};
887
888void Core::setRefEntBasicDataPtr(MoFEM::Interface &m_field,
889 boost::shared_ptr<BasicEntityData> &ptr) {
890
891 switch (m_field.getValue()) {
892 case -1:
893 set_ref_ent_basic_data_ptr_impl<-1>(ptr);
894 break;
895 case 0:
896 set_ref_ent_basic_data_ptr_impl<0>(ptr);
897 break;
898 case 1:
899 set_ref_ent_basic_data_ptr_impl<1>(ptr);
900 break;
901 default:
902 THROW_MESSAGE("Core index can vary from -1 to MAX_CORE_TMP");
903 }
904};
905
906boost::shared_ptr<RefEntityTmp<0>>
907Core::makeSharedRefEntity(MoFEM::Interface &m_field, const EntityHandle ent) {
908
909 boost::shared_ptr<RefEntityTmp<0>> ref_ent_ptr;
910
911 switch (m_field.getValue()) {
912 case -1:
913 ref_ent_ptr = boost::shared_ptr<RefEntityTmp<0>>(
914
915 new RefEntityTmp<-1>(m_field.get_basic_entity_data_ptr(), ent)
916
917 );
918 break;
919 case 0:
920 ref_ent_ptr = boost::shared_ptr<RefEntityTmp<0>>(
921
922 new RefEntityTmp<0>(m_field.get_basic_entity_data_ptr(), ent)
923
924 );
925 break;
926 case 1:
927 ref_ent_ptr = boost::shared_ptr<RefEntityTmp<0>>(
928
929 new RefEntityTmp<1>(m_field.get_basic_entity_data_ptr(), ent)
930
931 );
932 break;
933 default:
934 THROW_MESSAGE("Core index can vary from -1 to MAX_CORE_TMP");
935 }
936
937 return ref_ent_ptr;
938}
939
940boost::shared_ptr<RefEntityTmp<0>>
941Core::make_shared_ref_entity(const EntityHandle ent) {
942 return this->makeSharedRefEntity(*this, ent);
943}
944
945boost::shared_ptr<RefEntityTmp<0>>
946CoreTmp<-1>::make_shared_ref_entity(const EntityHandle ent) {
947 return this->makeSharedRefEntity(*this, ent);
948}
949
950} // namespace MoFEM
multi_index_container< FieldEntityEntFiniteElementAdjacencyMap, indexed_by< ordered_unique< tag< Composite_Unique_mi_tag >, composite_key< FieldEntityEntFiniteElementAdjacencyMap, const_mem_fun< FieldEntityEntFiniteElementAdjacencyMap, UId, &FieldEntityEntFiniteElementAdjacencyMap::getEntUniqueId >, const_mem_fun< FieldEntityEntFiniteElementAdjacencyMap, UId, &FieldEntityEntFiniteElementAdjacencyMap::getFeUniqueId > > >, ordered_non_unique< tag< Unique_mi_tag >, const_mem_fun< FieldEntityEntFiniteElementAdjacencyMap, UId, &FieldEntityEntFiniteElementAdjacencyMap::getEntUniqueId > >, ordered_non_unique< tag< FE_Unique_mi_tag >, const_mem_fun< FieldEntityEntFiniteElementAdjacencyMap, UId, &FieldEntityEntFiniteElementAdjacencyMap::getFeUniqueId > >, ordered_non_unique< tag< FEEnt_mi_tag >, const_mem_fun< FieldEntityEntFiniteElementAdjacencyMap, EntityHandle, &FieldEntityEntFiniteElementAdjacencyMap::getFeHandle > >, ordered_non_unique< tag< Ent_mi_tag >, const_mem_fun< FieldEntityEntFiniteElementAdjacencyMap, EntityHandle, &FieldEntityEntFiniteElementAdjacencyMap::getEntHandle > > > > FieldEntityEntFiniteElementAdjacencyMap_multiIndex
MultiIndex container keeps Adjacencies Element and dof entities adjacencies and vice versa.
static Index< 'p', 3 > p
void macro_is_deprecated_using_deprecated_function()
Is used to indicate that macro is deprecated Do nothing just triggers error at the compilation.
Definition: Core.cpp:24
static PetscErrorCode mofem_error_handler(MPI_Comm comm, int line, const char *fun, const char *file, PetscErrorCode n, PetscErrorType p, const char *mess, void *ctx)
multi_index_container< boost::shared_ptr< Field >, indexed_by< hashed_unique< tag< BitFieldId_mi_tag >, const_mem_fun< Field, const BitFieldId &, &Field::getId >, HashBit< BitFieldId >, EqBit< BitFieldId > >, ordered_unique< tag< Meshset_mi_tag >, member< Field, EntityHandle, &Field::meshSet > >, ordered_unique< tag< FieldName_mi_tag >, const_mem_fun< Field, boost::string_ref, &Field::getNameRef > >, ordered_non_unique< tag< BitFieldId_space_mi_tag >, const_mem_fun< Field, FieldSpace, &Field::getSpace > > > > Field_multiIndex
Field_multiIndex for Field.
#define MOFEM_LOG_C(channel, severity, format,...)
Definition: LogManager.hpp:314
static char help[]
@ QUIET
Definition: definitions.h:221
@ VERY_NOISY
Definition: definitions.h:225
FieldApproximationBase
approximation base
Definition: definitions.h:71
@ LASTBASE
Definition: definitions.h:82
#define CHK_THROW_MESSAGE(err, msg)
Check and throw MoFEM exception.
Definition: definitions.h:608
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:460
FieldSpace
approximation spaces
Definition: definitions.h:95
@ LASTSPACE
FieldSpace in [ 0, LASTSPACE )
Definition: definitions.h:102
@ NOSPACE
Definition: definitions.h:96
#define MYPCOMM_INDEX
default communicator number PCOMM
Definition: definitions.h:228
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:359
#define CHKERRG(n)
Check error code of MoFEM/MOAB/PETSc function.
Definition: definitions.h:496
@ MOFEM_OPERATION_UNSUCCESSFUL
Definition: definitions.h:47
@ MOFEM_DATA_INCONSISTENCY
Definition: definitions.h:44
@ MOFEM_SUCCESS
Definition: definitions.h:43
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:429
#define CHKERR
Inline error check.
Definition: definitions.h:548
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:453
#define THROW_MESSAGE(msg)
Throw MoFEM exception.
Definition: definitions.h:574
multi_index_container< boost::shared_ptr< DofEntity >, indexed_by< ordered_unique< tag< Unique_mi_tag >, const_mem_fun< DofEntity, UId, &DofEntity::getLocalUniqueId > >, ordered_non_unique< tag< Ent_mi_tag >, const_mem_fun< DofEntity, EntityHandle, &DofEntity::getEnt > > > > DofEntity_multiIndex
MultiIndex container keeps DofEntity.
multi_index_container< boost::shared_ptr< RefEntity >, indexed_by< ordered_unique< tag< Ent_mi_tag >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getEnt > >, ordered_non_unique< tag< Ent_Ent_mi_tag >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getParentEnt > >, ordered_non_unique< tag< Composite_EntType_and_ParentEntType_mi_tag >, composite_key< RefEntity, const_mem_fun< RefEntity, EntityType, &RefEntity::getEntType >, const_mem_fun< RefEntity, EntityType, &RefEntity::getParentEntType > > >, ordered_non_unique< tag< Composite_ParentEnt_And_EntType_mi_tag >, composite_key< RefEntity, const_mem_fun< RefEntity, EntityType, &RefEntity::getEntType >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getParentEnt > > > > > RefEntity_multiIndex
multi_index_container< boost::shared_ptr< RefElement >, indexed_by< ordered_unique< tag< Ent_mi_tag >, const_mem_fun< RefElement::interface_type_RefEntity, EntityHandle, &RefElement::getEnt > > > > RefElement_multiIndex
multi_index_container< boost::shared_ptr< EntFiniteElement >, indexed_by< ordered_unique< tag< Unique_mi_tag >, const_mem_fun< EntFiniteElement, UId, &EntFiniteElement::getLocalUniqueId > >, ordered_non_unique< tag< Ent_mi_tag >, const_mem_fun< EntFiniteElement::interface_type_RefEntity, EntityHandle, &EntFiniteElement::getEnt > >, ordered_non_unique< tag< FiniteElement_name_mi_tag >, const_mem_fun< EntFiniteElement::interface_type_FiniteElement, boost::string_ref, &EntFiniteElement::getNameRef > >, ordered_non_unique< tag< Composite_Name_And_Ent_mi_tag >, composite_key< EntFiniteElement, const_mem_fun< EntFiniteElement::interface_type_FiniteElement, boost::string_ref, &EntFiniteElement::getNameRef >, const_mem_fun< EntFiniteElement::interface_type_RefEntity, EntityHandle, &EntFiniteElement::getEnt > > > > > EntFiniteElement_multiIndex
MultiIndex container for EntFiniteElement.
multi_index_container< Problem, indexed_by< ordered_unique< tag< Meshset_mi_tag >, member< Problem, EntityHandle, &Problem::meshset > >, hashed_unique< tag< BitProblemId_mi_tag >, const_mem_fun< Problem, BitProblemId, &Problem::getId >, HashBit< BitProblemId >, EqBit< BitProblemId > >, hashed_unique< tag< Problem_mi_tag >, const_mem_fun< Problem, std::string, &Problem::getName > > > > Problem_multiIndex
MultiIndex for entities for Problem.
multi_index_container< boost::shared_ptr< FiniteElement >, indexed_by< hashed_unique< tag< FiniteElement_Meshset_mi_tag >, member< FiniteElement, EntityHandle, &FiniteElement::meshset > >, hashed_unique< tag< BitFEId_mi_tag >, const_mem_fun< FiniteElement, BitFEId, &FiniteElement::getId >, HashBit< BitFEId >, EqBit< BitFEId > >, ordered_unique< tag< FiniteElement_name_mi_tag >, const_mem_fun< FiniteElement, boost::string_ref, &FiniteElement::getNameRef > > > > FiniteElement_multiIndex
MultiIndex for entities for FiniteElement.
#define MOFEM_LOG(channel, severity)
Log.
Definition: LogManager.hpp:311
#define MOFEM_LOG_CHANNEL(channel)
Set and reset channel.
Definition: LogManager.hpp:287
const double T
static MoFEMErrorCodeGeneric< PetscErrorCode > ierr
Definition: Exceptions.hpp:87
static MoFEMErrorCodeGeneric< moab::ErrorCode > rval
Definition: Exceptions.hpp:85
PetscErrorCode MoFEMErrorCode
MoFEM/PETSc error code.
Definition: Exceptions.hpp:67
std::bitset< BITFEID_SIZE > BitFEId
Finite element Id.
Definition: Types.hpp:54
int DofIdx
Index of DOF.
Definition: Types.hpp:29
std::bitset< BITPROBLEMID_SIZE > BitProblemId
Problem Id.
Definition: Types.hpp:55
std::bitset< BITFIELDID_SIZE > BitFieldId
Field Id.
Definition: Types.hpp:53
std::bitset< BITREFEDGES_SIZE > BitRefEdges
Definition: Types.hpp:45
std::bitset< BITREFLEVEL_SIZE > BitRefLevel
Bit structure attached to each entity identifying to what mesh entity is attached.
Definition: Types.hpp:51
implementation of Data Operators for Forces and Sources
Definition: Common.hpp:21
static auto get_sub_iface_options_imp(T *const ptr, int) -> decltype(ptr->getSubInterfaceOptions())
Definition: Core.cpp:151
void set_ref_ent_basic_data_ptr_impl(boost::shared_ptr< BasicEntityData > &ptr)
Definition: Core.cpp:879
DeprecatedCoreInterface Interface
Definition: Interface.hpp:1965
multi_index_container< boost::shared_ptr< FieldEntity >, indexed_by< ordered_unique< tag< Unique_mi_tag >, member< FieldEntity, UId, &FieldEntity::localUId > >, ordered_non_unique< tag< Ent_mi_tag >, const_mem_fun< FieldEntity::interface_type_RefEntity, EntityHandle, &FieldEntity::getEnt > > > > FieldEntity_multiIndex
Core (interface) class.
Definition: Core.hpp:92
MoFEMErrorCode clearMap()
Cleaning database.
Definition: Core.cpp:488
MoFEMErrorCode query_interface(boost::typeindex::type_index type_index, UnknownInterface **iface) const
Getting interface of core database.
Definition: Core.cpp:56
static MoFEMErrorCode Initialize(int *argc, char ***args, const char file[], const char help[])
Initializes the MoFEM database PETSc, MOAB and MPI.
Definition: Core.cpp:85
MoFEMErrorCode regSubInterface()
Register subinterfac in core interface.
Definition: Core.cpp:163
static bool isGloballyInitialised
Core base globally initialized.
Definition: Core.hpp:1012
const RefElement_multiIndex * get_ref_finite_elements() const
Get the ref finite elements object.
Definition: Core.cpp:857
const FieldEntity_multiIndex * get_field_ents() const
Get the field ents object.
Definition: Core.cpp:866
MoFEMErrorCode initialiseDatabaseFromMesh(int verb=DEFAULT_VERBOSITY)
Initialize database getting information on mesh.
Definition: Core.cpp:281
MoFEMErrorCode registerSubInterfaces()
Register insterfaces.
Definition: Core.cpp:452
const Field_multiIndex * get_fields() const
Get the fields object.
Definition: Core.cpp:853
const Problem_multiIndex * get_problems() const
Get the problems object.
Definition: Core.cpp:876
MoFEMErrorCode coreGenericConstructor(moab::Interface &moab, MPI_Comm comm, const int verbose)
Definition: Core.cpp:184
const DofEntity_multiIndex * get_dofs() const
Get the dofs object.
Definition: Core.cpp:869
MoFEMErrorCode getOptions(int verb=DEFAULT_VERBOSITY)
Get core options from command line.
Definition: Core.cpp:734
static PetscBool isInitialized
petsc was initialised by other agent
Definition: Core.hpp:1014
const RefEntity_multiIndex * get_ref_ents() const
Get the ref ents object.
Definition: Core.cpp:854
const FieldEntityEntFiniteElementAdjacencyMap_multiIndex * get_ents_elements_adjacency() const
Get the dofs elements adjacency object.
Definition: Core.cpp:849
const EntFiniteElement_multiIndex * get_ents_finite_elements() const
Get the ents finite elements object.
Definition: Core.cpp:863
const FiniteElement_multiIndex * get_finite_elements() const
Get the finite elements object.
Definition: Core.cpp:860
MoFEMErrorCode addPrismToDatabase(const EntityHandle prism, int verb=DEFAULT_VERBOSITY)
add prim element
Definition: Core.cpp:507
static MoFEMErrorCode Finalize()
Checks for options to be called at the conclusion of the program.
Definition: Core.cpp:125
MoFEMErrorCode set_moab_interface(moab::Interface &new_moab, int verb=VERBOSE)
Set the moab interface object.
Definition: Core.cpp:725
MoFEMErrorCode setMoabInterface(moab::Interface &new_moab, int verb=VERBOSE)
Definition: Core.cpp:422
MoFEMErrorCode get_problem(const std::string &problem_name, const Problem **problem_ptr) const
Get problem database (data structure)
Definition: Core.cpp:780
MoFEMErrorCode getTags(int verb=DEFAULT_VERBOSITY)
Get tag handles.
Definition: Core.cpp:536
CoreTmp(moab::Interface &moab, MPI_Comm comm=PETSC_COMM_WORLD, const int verbose=VERBOSE)
Definition: Core.cpp:222
static int mpiInitialised
mpi was initialised by other agent
Definition: Core.hpp:1013
MeshsetsManager * get_meshsets_manager_ptr()
get MeshsetsManager pointer
Definition: Core.cpp:828
MoFEMErrorCode rebuild_database(int verb=DEFAULT_VERBOSITY)
Clear database and initialize it once again.
Definition: Core.cpp:715
MoFEMErrorCode clear_database(int verb=DEFAULT_VERBOSITY)
Clear database.
Definition: Core.cpp:707
MoFEMErrorCode set_moab_interface(moab::Interface &new_moab, int verb)
CoreTmp(moab::Interface &moab, MPI_Comm comm=PETSC_COMM_WORLD, const int verbose=VERBOSE)
Deprecated interface functions.
Finite element definition.
static MoFEMErrorCode getOptions()
Get logger option.
Definition: LogManager.cpp:133
static void createDefaultSinks(MPI_Comm comm)
Create default sinks.
Definition: LogManager.cpp:294
static PetscErrorCode logPetscFPrintf(FILE *fd, const char format[], va_list Argp)
Use to handle PETSc output.
Definition: LogManager.cpp:381
Interface for managing meshsets containing materials and boundary conditions.
MoFEMErrorCode initialiseDatabaseFromMesh(int verb=DEFAULT_VERBOSITY)
MoFEMErrorCode getTags(int verb=-1)
get tags handlers used on meshsets
keeps basic data about problem
keeps data about abstract PRISM finite element
MoFEMErrorCode getTags(int verb=-1)
get tags handlers used on meshsets
MoFEMErrorCode initialiseDatabaseFromMesh(int verb=0)
base class for all interface classes
MPI_Comm duplicatedComm
Definition: Core.hpp:37
WrapMPIComm(MPI_Comm comm, bool petsc)
Definition: Core.cpp:29
MPI_Comm comm
Definition: Core.hpp:36
bool isPetscComm
Definition: Core.hpp:38