17 : comm(comm), isPetscComm(petsc) {
41constexpr const int CoreTmp<-1>::value;
47 if (type_index == boost::typeindex::type_id<CoreInterface>()) {
50 }
else if (type_index ==
51 boost::typeindex::type_id<DeprecatedCoreInterface>()) {
57 auto it = iFaces.find(type_index);
58 if (it != iFaces.end()) {
75 MPI_Initialized(&mpiInitialised);
79 PetscInitialized(&isInitialized);
80 if (isInitialized == PETSC_FALSE) {
81 PetscInitialize(argc, args, file,
help);
88 isGloballyInitialised =
true;
91 char petsc_version[255];
92 CHKERR PetscGetVersion(petsc_version, 255);
93 MOFEM_LOG_C(
"WORLD", Sev::inform,
"MoFEM version %d.%d.%d (%s %s)",
94 MoFEM_VERSION_MAJOR, MoFEM_VERSION_MINOR, MoFEM_VERSION_BUILD,
95 MOAB_VERSION_STRING, petsc_version);
96 MOFEM_LOG_C(
"WORLD", Sev::inform,
"git commit id %s", GIT_SHA1_NAME);
98 auto log_time = [&](
const auto perefix,
auto time) {
100 << perefix << time.date().year() <<
"-" << time.date().month() <<
"-"
101 << time.date().day() <<
" " << time.time_of_day().hours() <<
":"
102 << time.time_of_day().minutes() <<
":" << time.time_of_day().seconds();
106 log_time(
"Local time: ", boost::posix_time::second_clock::local_time());
107 log_time(
"UTC time: ", boost::posix_time::second_clock::universal_time());
113 if (isGloballyInitialised) {
114 PetscPopErrorHandler();
115 isGloballyInitialised =
false;
117 if (isInitialized == PETSC_FALSE) {
118 PetscBool is_finalized;
119 PetscFinalized(&is_finalized);
124 if (!mpiInitialised) {
126 MPI_Finalized(&mpi_finalized);
139 ->
decltype(ptr->getSubInterfaceOptions()) {
140 return ptr->getSubInterfaceOptions();
152 CHKERR registerInterface<IFACE>(
true);
153 IFACE *ptr =
new IFACE(*
this);
161 auto get_sub_iface_options = [](
auto *
const ptr) {
164 CHKERR get_sub_iface_options(ptr);
166 auto type_idx = boost::typeindex::type_id<IFACE>();
167 iFaces.insert(type_idx, ptr);
172 MPI_Comm comm,
const int verbose) {
176 if (!isGloballyInitialised)
178 "MoFEM globally is not initialised, call MoFEM::Core::Initialize");
181 wrapMPIMOABComm = boost::make_shared<WrapMPIComm>(comm,
false);
183 MPI_Comm_size(mofemComm, &sIze);
184 MPI_Comm_rank(mofemComm, &rAnk);
187 ParallelComm *pComm = ParallelComm::get_pcomm(&moab,
MYPCOMM_INDEX);
189 pComm =
new ParallelComm(&moab, wrapMPIMOABComm->get_comm());
192 CHKERR registerInterface<UnknownInterface>();
193 CHKERR registerInterface<CoreInterface>();
194 CHKERR registerInterface<DeprecatedCoreInterface>();
197 PetscLogEventRegister(
"FE_preProcess", 0, &MOFEM_EVENT_preProcess);
198 PetscLogEventRegister(
"FE_operator", 0, &MOFEM_EVENT_operator);
199 PetscLogEventRegister(
"FE_postProcess", 0, &MOFEM_EVENT_postProcess);
200 PetscLogEventRegister(
"MoFEMCreateMat", 0, &MOFEM_EVENT_createMat);
217 ierr = this->registerSubInterfaces();
218 CHKERRABORT(comm,
ierr);
219 ierr = this->clearMap();
220 CHKERRABORT(comm,
ierr);
221 ierr = this->getTags();
222 CHKERRABORT(comm,
ierr);
223 ierr = this->getOptions(verbose);
224 CHKERRABORT(comm,
ierr);
226 this->basicEntityDataPtr = boost::make_shared<BasicEntityData>(moab);
227 setRefEntBasicDataPtr(*
this, this->basicEntityDataPtr);
229 ierr = this->initialiseDatabaseFromMesh(verbose);
230 CHKERRABORT(comm,
ierr);
241 ierr = this->registerSubInterfaces();
242 CHKERRABORT(comm,
ierr);
243 ierr = this->clearMap();
244 CHKERRABORT(comm,
ierr);
245 ierr = this->getTags();
246 CHKERRABORT(comm,
ierr);
247 ierr = this->getOptions(verbose);
248 CHKERRABORT(comm,
ierr);
250 this->basicEntityDataPtr = boost::make_shared<BasicEntityData>(moab);
251 setRefEntBasicDataPtr(*
this, this->basicEntityDataPtr);
253 ierr = this->initialiseDatabaseFromMesh(verbose);
254 CHKERRABORT(comm,
ierr);
258 PetscBool is_finalized;
259 PetscFinalized(&is_finalized);
263 if (isGloballyInitialised && is_finalized) {
264 isGloballyInitialised =
false;
274 Range ref_elems_to_add;
278 CHKERR get_moab().get_entities_by_type(0, MBENTITYSET, meshsets,
false);
279 Range special_meshsets;
280 for (
auto mit : meshsets) {
283 CHKERR get_moab().tag_get_data(th_FieldId, &mit, 1, &field_id);
287 const void *tag_name;
289 CHKERR get_moab().tag_get_by_ptr(
290 th_FieldName, &mit, 1, (
const void **)&tag_name, &tag_name_size);
295 << boost::string_ref((
char *)tag_name, tag_name_size);
297 auto p = fIelds.insert(boost::make_shared<Field>(moab, mit));
303 CHKERR get_moab().get_entities_by_handle(mit, ents,
true);
304 CHKERR get_moab().add_entities((*
p.first)->getMeshset(), ents);
305 CHKERR get_moab().delete_entities(&mit, 1);
307 special_meshsets.insert(mit);
313 CHKERR get_moab().tag_get_data(th_FEId, &mit, 1, &fe_id);
316 std::pair<FiniteElement_multiIndex::iterator, bool>
p =
317 finiteElements.insert(
318 boost::shared_ptr<FiniteElement>(
new FiniteElement(moab, mit)));
320 MOFEM_LOG(
"WORLD", Sev::verbose) <<
"Read finite element " << **
p.first;
323 CHKERR get_moab().get_entities_by_type(mit, MBENTITYSET, ents,
false);
324 CHKERR get_moab().get_entities_by_handle(mit, ents,
true);
325 ref_elems_to_add.merge(ents);
329 CHKERR get_moab().add_entities((*
p.first)->getMeshset(), ents);
330 CHKERR get_moab().delete_entities(&mit, 1);
332 special_meshsets.insert(mit);
337 CHKERR get_moab().tag_get_data(th_ProblemId, &mit, 1, &problem_id);
339 if (problem_id != 0) {
340 std::pair<Problem_multiIndex::iterator, bool>
p =
341 pRoblems.insert(
Problem(moab, mit));
343 MOFEM_LOG(
"WORLD", Sev::verbose) <<
"Read problem " << *
p.first;
345 <<
"\tBitRef " <<
p.first->getBitRefLevel() <<
" BitMask "
346 <<
p.first->getBitRefLevelMask();
353 CHKERR get_moab().get_entities_by_handle(mit, ents,
true);
354 CHKERR get_moab().get_entities_by_type(mit, MBENTITYSET, ents,
true);
355 CHKERR get_moab().add_entities(
p.first->meshset, ents);
356 CHKERR get_moab().delete_entities(&mit, 1);
358 special_meshsets.insert(mit);
365 CHKERR get_moab().get_entities_by_handle(0, bit_ref_ents,
false);
366 bit_ref_ents = subtract(bit_ref_ents, special_meshsets);
367 CHKERR getInterface<BitRefManager>()->filterEntitiesByRefLevel(
369 CHKERR getInterface<BitRefManager>()->setEntitiesBitRefLevel(bit_ref_ents);
370 CHKERR getInterface<BitRefManager>()->setElementsBitRefLevel(
374 for (
auto field : fIelds) {
375 if (field->getSpace() !=
NOSPACE) {
376 Range ents_of_id_meshset;
377 CHKERR get_moab().get_entities_by_handle(field->getMeshset(),
378 ents_of_id_meshset,
false);
379 CHKERR set_field_order(ents_of_id_meshset, field->getId(), -1, verb);
383 if (initaliseAndBuildField || initaliseAndBuildFiniteElements) {
384 CHKERR build_fields(verb);
385 if (initaliseAndBuildFiniteElements) {
386 CHKERR build_finite_elements(verb);
392 list_finite_elements();
398 CHKERR getInterface(m_manger_ptr);
401 CHKERR getInterface(series_recorder_ptr);
416 moab = std::ref(new_moab);
419 ParallelComm *pComm = ParallelComm::get_pcomm(&new_moab,
MYPCOMM_INDEX);
421 pComm =
new ParallelComm(&new_moab, wrapMPIMOABComm->get_comm());
428 basicEntityDataPtr = boost::make_shared<BasicEntityData>(moab);
429 setRefEntBasicDataPtr(*
this, this->basicEntityDataPtr);
432 CHKERR this->initialiseDatabaseFromMesh(verb);
443 CHKERR regSubInterface<LogManager>();
444 CHKERR regSubInterface<Simple>();
445 CHKERR regSubInterface<OperatorsTester>();
446 CHKERR regSubInterface<PipelineManager>();
447 CHKERR regSubInterface<ProblemsManager>();
448 CHKERR regSubInterface<MatrixManager>();
449 CHKERR regSubInterface<ISManager>();
450 CHKERR regSubInterface<VecManager>();
451 CHKERR regSubInterface<FieldBlas>();
452 CHKERR regSubInterface<BitRefManager>();
453 CHKERR regSubInterface<Tools>();
454 CHKERR regSubInterface<CommInterface>();
455 CHKERR regSubInterface<MeshsetsManager>();
456 CHKERR regSubInterface<NodeMergerInterface>();
457 CHKERR regSubInterface<PrismsFromSurfaceInterface>();
458 CHKERR regSubInterface<MeshRefinement>();
459 CHKERR regSubInterface<PrismInterface>();
460 CHKERR regSubInterface<CutMeshInterface>();
461 CHKERR regSubInterface<SeriesRecorder>();
463 CHKERR regSubInterface<TetGenInterface>();
466 CHKERR regSubInterface<MedInterface>();
468 CHKERR regSubInterface<FieldEvaluatorInterface>();
469 CHKERR regSubInterface<BcManager>();
477 CHKERR getInterface<SeriesRecorder>()->clearMap();
478 CHKERR getInterface<MeshsetsManager>()->clearMap();
479 CHKERR getInterface<CutMeshInterface>()->clearMap();
481 refinedEntities.clear();
482 refinedFiniteElements.clear();
486 finiteElements.clear();
487 entsFiniteElements.clear();
488 entFEAdjacencies.clear();
497 std::pair<RefEntity_multiIndex::iterator, bool> p_ent;
498 p_ent = refinedEntities.insert(
499 boost::make_shared<RefEntity>(basicEntityDataPtr, prism));
501 std::pair<RefElement_multiIndex::iterator, bool>
p;
502 p = refinedFiniteElements.insert(
506 CHKERR get_moab().get_connectivity(prism, conn, num_nodes,
true);
507 Range face_side3, face_side4;
508 CHKERR get_moab().get_adjacencies(conn, 3, 2,
false, face_side3);
509 CHKERR get_moab().get_adjacencies(&conn[3], 3, 2,
false, face_side4);
510 if (face_side3.size() != 1)
512 "prism don't have side face 3");
513 if (face_side4.size() != 1)
515 "prims don't have side face 4");
516 p.first->get()->getSideNumberPtr(*face_side3.begin());
517 p.first->get()->getSideNumberPtr(*face_side4.begin());
525 const EntityHandle root_meshset = get_moab().get_root_set();
528 "Root meshset should be 0");
534 CHKERR getFileVersion(moab, version);
540 auto check_tag_allocated = [](
auto &
rval) {
542 if (
rval == MB_ALREADY_ALLOCATED)
551 rval = get_moab().tag_get_handle(
"_MoFEMBuild", 1, MB_TYPE_INTEGER,
552 th_MoFEMBuild, MB_TAG_CREAT | MB_TAG_MESH,
556 CHKERR get_moab().tag_get_by_ptr(th_MoFEMBuild, &root_meshset, 1,
557 (
const void **)&buildMoFEM);
562 const int def_part = -1;
563 CHKERR get_moab().tag_get_handle(
"PARTITION", 1, MB_TYPE_INTEGER, th_Part,
564 MB_TAG_CREAT | MB_TAG_SPARSE, &def_part);
573 const int def_part = -1;
574 CHKERR get_moab().tag_get_handle(
"_MeshsetPartition", 1, MB_TYPE_INTEGER,
575 th_Part, MB_TAG_CREAT | MB_TAG_SPARSE,
578 CHKERR get_moab().tag_get_handle(
"_RefParentHandle", 1, MB_TYPE_HANDLE,
580 MB_TAG_CREAT | MB_TAG_SPARSE, &def_handle);
582 CHKERR get_moab().tag_get_handle(
583 "_RefBitLevel",
sizeof(
BitRefLevel), MB_TYPE_OPAQUE, th_RefBitLevel,
584 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_bit_level);
586 CHKERR get_moab().tag_get_handle(
587 "_RefBitLevelMask",
sizeof(
BitRefLevel), MB_TYPE_OPAQUE,
588 th_RefBitLevel_Mask, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
589 &def_bit_level_mask);
591 CHKERR get_moab().tag_get_handle(
592 "_RefBitEdge",
sizeof(
BitRefEdges), MB_TYPE_OPAQUE, th_RefBitEdge,
593 MB_TAG_CREAT | MB_TAG_SPARSE | MB_TAG_BYTES, &def_bit_edge);
598 const unsigned long int def_id = 0;
599 CHKERR get_moab().tag_get_handle(
600 "_FieldId",
sizeof(
BitFieldId), MB_TYPE_OPAQUE, th_FieldId,
601 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
603 CHKERR get_moab().tag_get_handle(
604 "_FieldSpace",
sizeof(
FieldSpace), MB_TYPE_OPAQUE, th_FieldSpace,
605 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_space);
607 CHKERR get_moab().tag_get_handle(
609 th_FieldBase, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_base);
610 const int def_val_len = 0;
611 CHKERR get_moab().tag_get_handle(
612 "_FieldName", def_val_len, MB_TYPE_OPAQUE, th_FieldName,
613 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_VARLEN | MB_TAG_SPARSE, NULL);
614 CHKERR get_moab().tag_get_handle(
615 "_FieldName_DataNamePrefix", def_val_len, MB_TYPE_OPAQUE,
616 th_FieldName_DataNamePrefix,
617 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_VARLEN | MB_TAG_SPARSE, NULL);
622 const unsigned long int def_id = 0;
623 const int def_val_len = 0;
624 CHKERR get_moab().tag_get_handle(
625 "_FEId",
sizeof(
BitFEId), MB_TYPE_OPAQUE, th_FEId,
626 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
627 CHKERR get_moab().tag_get_handle(
628 "_FEName", def_val_len, MB_TYPE_OPAQUE, th_FEName,
629 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_VARLEN | MB_TAG_SPARSE, NULL);
630 CHKERR get_moab().tag_get_handle(
631 "_FEIdCol",
sizeof(
BitFieldId), MB_TYPE_OPAQUE, th_FEIdCol,
632 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
633 CHKERR get_moab().tag_get_handle(
634 "_FEIdRow",
sizeof(
BitFieldId), MB_TYPE_OPAQUE, th_FEIdRow,
635 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
636 CHKERR get_moab().tag_get_handle(
637 "_FEIdData",
sizeof(
BitFieldId), MB_TYPE_OPAQUE, th_FEIdData,
638 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
643 const unsigned long int def_id = 0;
644 const int def_val_len = 0;
645 CHKERR get_moab().tag_get_handle(
646 "_ProblemId",
sizeof(
BitProblemId), MB_TYPE_OPAQUE, th_ProblemId,
647 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
648 CHKERR get_moab().tag_get_handle(
649 "_ProblemFEId",
sizeof(
BitFEId), MB_TYPE_OPAQUE, th_ProblemFEId,
650 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_id);
651 CHKERR get_moab().tag_get_handle(
652 "_ProblemName", def_val_len, MB_TYPE_OPAQUE, th_ProblemName,
653 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_VARLEN | MB_TAG_SPARSE, NULL);
655 CHKERR get_moab().tag_get_handle(
656 "_ProblemNbDofsRow",
sizeof(
DofIdx), MB_TYPE_OPAQUE,
657 th_ProblemNbDofsRow, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
659 CHKERR get_moab().tag_get_handle(
660 "_ProblemNbDofsCol",
sizeof(
DofIdx), MB_TYPE_OPAQUE,
661 th_ProblemNbDofsCol, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
663 CHKERR get_moab().tag_get_handle(
664 "_ProblemLocalNbDofsRow",
sizeof(
DofIdx), MB_TYPE_OPAQUE,
665 th_ProblemLocalNbDofRow, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
667 CHKERR get_moab().tag_get_handle(
668 "_ProblemGhostNbDofsRow",
sizeof(
DofIdx), MB_TYPE_OPAQUE,
669 th_ProblemGhostNbDofRow, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
671 CHKERR get_moab().tag_get_handle(
672 "_ProblemLocalNbDofsCol",
sizeof(
DofIdx), MB_TYPE_OPAQUE,
673 th_ProblemLocalNbDofCol, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
675 CHKERR get_moab().tag_get_handle(
676 "_ProblemGhostNbDofsCol",
sizeof(
DofIdx), MB_TYPE_OPAQUE,
677 th_ProblemGhostNbDofCol, MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE,
683 CHKERR getInterface(meshsets_manager_ptr);
688 CHKERR getInterface(series_recorder_ptr);
707 CHKERR this->getTags(verb);
708 CHKERR this->initialiseDatabaseFromMesh(verb);
713 return this->setMoabInterface(new_moab, verb);
718 return this->setMoabInterface(new_moab, verb);
726 CHKERR PetscOptionsBegin(mofemComm, optionsPrefix.c_str(),
"Mesh cut options",
727 "See MoFEM documentation");
730 "-mofem_init_fields",
"Initialise fields on construction",
"",
731 initaliseAndBuildField, &initaliseAndBuildField, NULL);
734 "-mofem_init_fields",
"Initialise fields on construction",
"",
735 initaliseAndBuildFiniteElements, &initaliseAndBuildFiniteElements, NULL);
740 ierr = PetscOptionsEnd();
750 *fields_ptr = &fIelds;
757 *refined_entities_ptr = &refinedEntities;
763 *refined_finite_elements_ptr = &refinedFiniteElements;
768 const Problem **problem_ptr)
const {
770 typedef Problem_multiIndex::index<Problem_mi_tag>::type ProblemsByName;
772 ProblemsByName::iterator p_miit = problems.find(problem_name);
773 if (p_miit == problems.end()) {
775 "problem < %s > not found, (top tip: check spelling)",
776 problem_name.c_str());
778 *problem_ptr = &*p_miit;
785 *problems_ptr = &pRoblems;
792 *field_ents = &entsFields;
797 *dofs_ptr = &dofsField;
804 *fe_ptr = &finiteElements;
811 *fe_ent_ptr = &entsFiniteElements;
817 getInterface(meshsets_manager_ptr);
818 return meshsets_manager_ptr;
823 getInterface(meshsets_manager_ptr);
824 return meshsets_manager_ptr;
829 *dofs_elements_adjacency)
const {
831 *dofs_elements_adjacency = &entFEAdjacencies;
837 return &entFEAdjacencies;
842 return &refinedEntities;
845 return &refinedFiniteElements;
848 return &finiteElements;
851 return &entsFiniteElements;
860 "Problem of given name not found");
865template <
int V,
typename std::enable_if<(V >= 0),
int>::type * =
nullptr>
870template <
int V,
typename std::enable_if<(V < 0),
int>::type * =
nullptr>
871void set_ref_ent_basic_data_ptr_impl(boost::shared_ptr<BasicEntityData> &ptr) {
875void Core::setRefEntBasicDataPtr(MoFEM::Interface &m_field,
876 boost::shared_ptr<BasicEntityData> &ptr) {
878 switch (m_field.getValue()) {
880 set_ref_ent_basic_data_ptr_impl<-1>(ptr);
883 set_ref_ent_basic_data_ptr_impl<0>(ptr);
886 set_ref_ent_basic_data_ptr_impl<1>(ptr);
889 THROW_MESSAGE("Core index can vary from -1 to MAX_CORE_TMP");
893boost::shared_ptr<RefEntityTmp<0>>
894Core::makeSharedRefEntity(MoFEM::Interface &m_field, const EntityHandle ent) {
896 boost::shared_ptr<RefEntityTmp<0>> ref_ent_ptr;
898 switch (m_field.getValue()) {
900 ref_ent_ptr = boost::shared_ptr<RefEntityTmp<0>>(
902 new RefEntityTmp<-1>(m_field.get_basic_entity_data_ptr(), ent)
907 ref_ent_ptr = boost::shared_ptr<RefEntityTmp<0>>(
909 new RefEntityTmp<0>(m_field.get_basic_entity_data_ptr(), ent)
914 ref_ent_ptr = boost::shared_ptr<RefEntityTmp<0>>(
916 new RefEntityTmp<1>(m_field.get_basic_entity_data_ptr(), ent)
921 THROW_MESSAGE("Core index can vary from -1 to MAX_CORE_TMP");
927boost::shared_ptr<RefEntityTmp<0>>
928Core::make_shared_ref_entity(const EntityHandle ent) {
929 return this->makeSharedRefEntity(*
this, ent);
932boost::shared_ptr<RefEntityTmp<0>>
934 return this->makeSharedRefEntity(*
this, ent);
multi_index_container< FieldEntityEntFiniteElementAdjacencyMap, indexed_by< ordered_unique< tag< Composite_Unique_mi_tag >, composite_key< FieldEntityEntFiniteElementAdjacencyMap, const_mem_fun< FieldEntityEntFiniteElementAdjacencyMap, UId, &FieldEntityEntFiniteElementAdjacencyMap::getEntUniqueId >, const_mem_fun< FieldEntityEntFiniteElementAdjacencyMap, UId, &FieldEntityEntFiniteElementAdjacencyMap::getFeUniqueId > > >, ordered_non_unique< tag< Unique_mi_tag >, const_mem_fun< FieldEntityEntFiniteElementAdjacencyMap, UId, &FieldEntityEntFiniteElementAdjacencyMap::getEntUniqueId > >, ordered_non_unique< tag< FE_Unique_mi_tag >, const_mem_fun< FieldEntityEntFiniteElementAdjacencyMap, UId, &FieldEntityEntFiniteElementAdjacencyMap::getFeUniqueId > >, ordered_non_unique< tag< FEEnt_mi_tag >, const_mem_fun< FieldEntityEntFiniteElementAdjacencyMap, EntityHandle, &FieldEntityEntFiniteElementAdjacencyMap::getFeHandle > >, ordered_non_unique< tag< Ent_mi_tag >, const_mem_fun< FieldEntityEntFiniteElementAdjacencyMap, EntityHandle, &FieldEntityEntFiniteElementAdjacencyMap::getEntHandle > > > > FieldEntityEntFiniteElementAdjacencyMap_multiIndex
MultiIndex container keeps Adjacencies Element and dof entities adjacencies and vice versa.
void macro_is_deprecated_using_deprecated_function()
Is used to indicate that macro is deprecated Do nothing just triggers error at the compilation.
static PetscErrorCode mofem_error_handler(MPI_Comm comm, int line, const char *fun, const char *file, PetscErrorCode n, PetscErrorType p, const char *mess, void *ctx)
multi_index_container< boost::shared_ptr< Field >, indexed_by< hashed_unique< tag< BitFieldId_mi_tag >, const_mem_fun< Field, const BitFieldId &, &Field::getId >, HashBit< BitFieldId >, EqBit< BitFieldId > >, ordered_unique< tag< Meshset_mi_tag >, member< Field, EntityHandle, &Field::meshSet > >, ordered_unique< tag< FieldName_mi_tag >, const_mem_fun< Field, boost::string_ref, &Field::getNameRef > >, ordered_non_unique< tag< BitFieldId_space_mi_tag >, const_mem_fun< Field, FieldSpace, &Field::getSpace > > > > Field_multiIndex
Field_multiIndex for Field.
#define MOFEM_LOG_C(channel, severity, format,...)
FieldApproximationBase
approximation base
#define CHK_THROW_MESSAGE(err, msg)
Check and throw MoFEM exception.
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
FieldSpace
approximation spaces
@ LASTSPACE
FieldSpace in [ 0, LASTSPACE )
#define MYPCOMM_INDEX
default communicator number PCOMM
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
#define CHKERRG(n)
Check error code of MoFEM/MOAB/PETSc function.
@ MOFEM_OPERATION_UNSUCCESSFUL
@ MOFEM_DATA_INCONSISTENCY
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
#define CHKERR
Inline error check.
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
#define THROW_MESSAGE(msg)
Throw MoFEM exception.
multi_index_container< boost::shared_ptr< DofEntity >, indexed_by< ordered_unique< tag< Unique_mi_tag >, const_mem_fun< DofEntity, UId, &DofEntity::getLocalUniqueId > >, ordered_non_unique< tag< Ent_mi_tag >, const_mem_fun< DofEntity, EntityHandle, &DofEntity::getEnt > > > > DofEntity_multiIndex
MultiIndex container keeps DofEntity.
multi_index_container< boost::shared_ptr< RefEntity >, indexed_by< ordered_unique< tag< Ent_mi_tag >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getEnt > >, ordered_non_unique< tag< Ent_Ent_mi_tag >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getParentEnt > >, ordered_non_unique< tag< Composite_EntType_and_ParentEntType_mi_tag >, composite_key< RefEntity, const_mem_fun< RefEntity, EntityType, &RefEntity::getEntType >, const_mem_fun< RefEntity, EntityType, &RefEntity::getParentEntType > > >, ordered_non_unique< tag< Composite_ParentEnt_And_EntType_mi_tag >, composite_key< RefEntity, const_mem_fun< RefEntity, EntityType, &RefEntity::getEntType >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getParentEnt > > > > > RefEntity_multiIndex
multi_index_container< boost::shared_ptr< RefElement >, indexed_by< ordered_unique< tag< Ent_mi_tag >, const_mem_fun< RefElement::interface_type_RefEntity, EntityHandle, &RefElement::getEnt > > > > RefElement_multiIndex
multi_index_container< boost::shared_ptr< EntFiniteElement >, indexed_by< ordered_unique< tag< Unique_mi_tag >, const_mem_fun< EntFiniteElement, UId, &EntFiniteElement::getLocalUniqueId > >, ordered_non_unique< tag< Ent_mi_tag >, const_mem_fun< EntFiniteElement::interface_type_RefEntity, EntityHandle, &EntFiniteElement::getEnt > > > > EntFiniteElement_multiIndex
MultiIndex container for EntFiniteElement.
multi_index_container< Problem, indexed_by< ordered_unique< tag< Meshset_mi_tag >, member< Problem, EntityHandle, &Problem::meshset > >, hashed_unique< tag< BitProblemId_mi_tag >, const_mem_fun< Problem, BitProblemId, &Problem::getId >, HashBit< BitProblemId >, EqBit< BitProblemId > >, hashed_unique< tag< Problem_mi_tag >, const_mem_fun< Problem, std::string, &Problem::getName > > > > Problem_multiIndex
MultiIndex for entities for Problem.
multi_index_container< boost::shared_ptr< FiniteElement >, indexed_by< hashed_unique< tag< FiniteElement_Meshset_mi_tag >, member< FiniteElement, EntityHandle, &FiniteElement::meshset > >, hashed_unique< tag< BitFEId_mi_tag >, const_mem_fun< FiniteElement, BitFEId, &FiniteElement::getId >, HashBit< BitFEId >, EqBit< BitFEId > >, ordered_unique< tag< FiniteElement_name_mi_tag >, const_mem_fun< FiniteElement, boost::string_ref, &FiniteElement::getNameRef > > > > FiniteElement_multiIndex
MultiIndex for entities for FiniteElement.
#define MOFEM_LOG(channel, severity)
Log.
#define MOFEM_LOG_CHANNEL(channel)
Set and reset channel.
static MoFEMErrorCodeGeneric< PetscErrorCode > ierr
static MoFEMErrorCodeGeneric< moab::ErrorCode > rval
PetscErrorCode MoFEMErrorCode
MoFEM/PETSc error code.
std::bitset< BITFEID_SIZE > BitFEId
Finite element Id.
std::bitset< BITPROBLEMID_SIZE > BitProblemId
Problem Id.
std::bitset< BITFIELDID_SIZE > BitFieldId
Field Id.
std::bitset< BITREFEDGES_SIZE > BitRefEdges
std::bitset< BITREFLEVEL_SIZE > BitRefLevel
Bit structure attached to each entity identifying to what mesh entity is attached.
implementation of Data Operators for Forces and Sources
static auto get_sub_iface_options_imp(T *const ptr, int) -> decltype(ptr->getSubInterfaceOptions())
void set_ref_ent_basic_data_ptr_impl(boost::shared_ptr< BasicEntityData > &ptr)
multi_index_container< boost::shared_ptr< FieldEntity >, indexed_by< ordered_unique< tag< Unique_mi_tag >, member< FieldEntity, UId, &FieldEntity::localUId > >, ordered_non_unique< tag< Ent_mi_tag >, const_mem_fun< FieldEntity::interface_type_RefEntity, EntityHandle, &FieldEntity::getEnt > > > > FieldEntity_multiIndex
static MoFEMErrorCode fixTagSize(moab::Interface &moab, bool *changed=nullptr)
Fix tag size when BITREFLEVEL_SIZE of core library is different than file BITREFLEVEL_SIZE.
MoFEMErrorCode clearMap()
Cleaning database.
MoFEMErrorCode query_interface(boost::typeindex::type_index type_index, UnknownInterface **iface) const
Getting interface of core database.
static MoFEMErrorCode Initialize(int *argc, char ***args, const char file[], const char help[])
Initializes the MoFEM database PETSc, MOAB and MPI.
MoFEMErrorCode regSubInterface()
Register subinterfac in core interface.
static bool isGloballyInitialised
Core base globally initialized.
const RefElement_multiIndex * get_ref_finite_elements() const
Get the ref finite elements object.
const FieldEntity_multiIndex * get_field_ents() const
Get the field ents object.
MoFEMErrorCode initialiseDatabaseFromMesh(int verb=DEFAULT_VERBOSITY)
Initialize database getting information on mesh.
MoFEMErrorCode registerSubInterfaces()
Register insterfaces.
const Field_multiIndex * get_fields() const
Get the fields object.
const Problem_multiIndex * get_problems() const
Get the problems object.
MoFEMErrorCode coreGenericConstructor(moab::Interface &moab, MPI_Comm comm, const int verbose)
const DofEntity_multiIndex * get_dofs() const
Get the dofs object.
MoFEMErrorCode getOptions(int verb=DEFAULT_VERBOSITY)
Get core options from command line.
static PetscBool isInitialized
petsc was initialised by other agent
const RefEntity_multiIndex * get_ref_ents() const
Get the ref ents object.
const FieldEntityEntFiniteElementAdjacencyMap_multiIndex * get_ents_elements_adjacency() const
Get the dofs elements adjacency object.
const EntFiniteElement_multiIndex * get_ents_finite_elements() const
Get the ents finite elements object.
const FiniteElement_multiIndex * get_finite_elements() const
Get the finite elements object.
MoFEMErrorCode addPrismToDatabase(const EntityHandle prism, int verb=DEFAULT_VERBOSITY)
add prim element
static MoFEMErrorCode Finalize()
Checks for options to be called at the conclusion of the program.
MoFEMErrorCode set_moab_interface(moab::Interface &new_moab, int verb=VERBOSE)
Set the moab interface object.
MoFEMErrorCode setMoabInterface(moab::Interface &new_moab, int verb=VERBOSE)
MoFEMErrorCode get_problem(const std::string &problem_name, const Problem **problem_ptr) const
Get problem database (data structure)
MoFEMErrorCode getTags(int verb=DEFAULT_VERBOSITY)
Get tag handles.
CoreTmp(moab::Interface &moab, MPI_Comm comm=PETSC_COMM_WORLD, const int verbose=VERBOSE)
static int mpiInitialised
mpi was initialised by other agent
MeshsetsManager * get_meshsets_manager_ptr()
get MeshsetsManager pointer
MoFEMErrorCode rebuild_database(int verb=DEFAULT_VERBOSITY)
Clear database and initialize it once again.
MoFEMErrorCode clear_database(int verb=DEFAULT_VERBOSITY)
Clear database.
MoFEMErrorCode set_moab_interface(moab::Interface &new_moab, int verb)
CoreTmp(moab::Interface &moab, MPI_Comm comm=PETSC_COMM_WORLD, const int verbose=VERBOSE)
Deprecated interface functions.
Finite element definition.
static MoFEMErrorCode getOptions()
Get logger option.
static void createDefaultSinks(MPI_Comm comm)
Create default sinks.
static PetscErrorCode logPetscFPrintf(FILE *fd, const char format[], va_list Argp)
Use to handle PETSc output.
Interface for managing meshsets containing materials and boundary conditions.
MoFEMErrorCode initialiseDatabaseFromMesh(int verb=DEFAULT_VERBOSITY)
MoFEMErrorCode getTags(int verb=-1)
get tags handlers used on meshsets
keeps basic data about problem
keeps data about abstract PRISM finite element
MoFEMErrorCode getTags(int verb=-1)
get tags handlers used on meshsets
MoFEMErrorCode initialiseDatabaseFromMesh(int verb=0)
base class for all interface classes
WrapMPIComm(MPI_Comm comm, bool petsc)