v0.10.0
Namespaces | Classes | Typedefs | Enumerations | Functions | Variables
MoFEM Namespace Reference

implementation of Data Operators for Forces and Sources More...

Namespaces

 Exceptions
 Exceptions and handling errors data structures.
 
 LogKeywords
 
 Types
 Types.
 

Classes

struct  AccelerationCubitBcData
 Definition of the acceleration bc data structure. More...
 
struct  BaseFunction
 Base class if inherited used to calculate base functions. More...
 
struct  BaseFunctionCtx
 Base class used to exchange data between element data structures and class calculating base functions. More...
 
struct  BaseFunctionUnknownInterface
 
struct  BasicEntityData
 PipelineManager data. like access to moab interface and basic tag handlers. More...
 
struct  BasicMethod
 Data structure to exchange data between mofem and User Loop Methods.It allows to exchange data between MoFEM and user functions. It stores information about multi-indices. More...
 
struct  BasicMethodPtr
 
struct  BernsteinBezier
 Evaluating BB polynomial. More...
 
struct  BitFEId_mi_tag
 
struct  BitFieldId_mi_tag
 
struct  BitFieldId_space_mi_tag
 
struct  BitLevelCoupler
 Interface set parent for vertices, edges, triangles and tetrahedrons.FIXME: Not tested, slow, bugs. More...
 
struct  BitProblemId_mi_tag
 
struct  BitRefManager
 Managing BitRefLevels. More...
 
struct  Block_BodyForces
 Body force data structure. More...
 
struct  BlockData
 
struct  BlockSetAttributes
 Arbitrary block attributes data structure. More...
 
struct  CfgCubitBcData
 Definition of the cfd_bc data structure. More...
 
struct  CommInterface
 Managing BitRefLevels. More...
 
struct  ComposedProblemsData
 
struct  Composite_Cubit_msId_And_MeshSetType_mi_tag
 
struct  Composite_Ent_And_EntDofIdx_mi_tag
 
struct  Composite_Ent_and_ShortId_mi_tag
 
struct  Composite_Ent_Order_And_CoeffIdx_mi_tag
 
struct  Composite_EntType_and_ParentEntType_mi_tag
 
struct  Composite_EntType_and_Space_mi_tag
 
struct  Composite_mi_tag
 
struct  Composite_Name_And_Ent_And_EntDofIdx_mi_tag
 
struct  Composite_Name_And_Ent_mi_tag
 
struct  Composite_Name_And_Part_mi_tag
 
struct  Composite_Name_Ent_And_Part_mi_tag
 
struct  Composite_Name_Ent_Order_And_CoeffIdx_mi_tag
 
struct  Composite_ParentEnt_And_BitsOfRefinedEdges_mi_tag
 
struct  Composite_ParentEnt_And_EntType_mi_tag
 
struct  Composite_Part_And_Order_mi_tag
 
struct  Composite_SeriesID_And_Step_mi_tag
 
struct  Composite_SeriesName_And_Step_mi_tag
 
struct  Composite_SeriesName_And_Time_mi_tag
 
struct  Composite_Unique_mi_tag
 
struct  ContactPrismElementForcesAndSourcesCore
 ContactPrism finite elementUser is implementing own operator at Gauss points level, by own class derived from ContactPrismElementForcesAndSourcesCoreL::UserDataOperator. Arbitrary number of operator added pushing instances to rowOpPtrVector and rowColOpPtrVector. More...
 
struct  CoordSys
 Structure for Coordinate system of two-point tensorScientific computing applications deal in physical quantities expressed as tensors: scalars such as temperature, vectors such as velocity, and second-order tensors such as stress. In practice, these are formally tensor fields: a tensor field assigns a tensor to each point in a mathematical space (typically a Euclidean space or manifold). More...
 
struct  CoordSysName_mi_tag
 
struct  CoordSystemsManager
 
struct  CoreInterface
 InterfaceThis interface is used by user to:
More...
 
struct  CoreTmp
 
struct  CoreTmp< 0 >
 Core (interface) class. More...
 
struct  CoreTmp<-1 >
 
struct  CoreValue
 
struct  CreateRowComressedADJMatrix
 Create compressed matrix. More...
 
struct  CubitMeshSets
 this struct keeps basic methods for moab meshset about material and boundary conditions More...
 
struct  CubitMeshSets_change_add_bit_to_cubit_bc_type
 change meshset type More...
 
struct  CubitMeshSets_change_attributes
 
struct  CubitMeshSets_change_attributes_data_structure
 
struct  CubitMeshSets_change_bc_data_structure
 
struct  CubitMeshSets_change_name
 change meshset name More...
 
struct  CubitMeshSets_mask_meshset_mi_tag
 
struct  CubitMeshSets_mi_tag
 MultiIndex Tag for field id. More...
 
struct  CubitMeshSets_name
 
struct  CutMeshInterface
 Interface to cut meshes. More...
 
struct  DataForcesAndSourcesCore
 data structure for finite element entityIt keeps that about indices of degrees of freedom, dofs data, base functions functions, entity side number, type of entities, approximation order, etc. More...
 
struct  DataOperator
 base operator to do operations at Gauss Pt. level More...
 
struct  DefaultElementAdjacency
 default adjacency map More...
 
struct  DeprecatedCoreInterface
 Deprecated interface functions. More...
 
struct  DerivedDataForcesAndSourcesCore
 this class derive data form other data structure More...
 
struct  DisplacementCubitBcData
 Definition of the displacement bc data structure. More...
 
struct  DMCtx
 PETSc Discrete Manager data structure. More...
 
struct  DOF_Unique_mi_tag
 
struct  DofEntity
 keeps information about DOF on the entity More...
 
struct  DofEntity_active_change
 
struct  DofMethod
 Data structure to exchange data between mofem and User Loop Methods on entities.It allows to exchange data between MoFEM and user functions. It stores information about multi-indices. More...
 
struct  EdgeElementForcesAndSourcesCoreBase
 Edge finite elementUser is implementing own operator at Gauss points level, by own object derived from EdgeElementForcesAndSourcesCoreL::UserDataOperator. Arbitrary number of operator added pushing objects to rowOpPtrVector and rowColOpPtrVector. More...
 
struct  EdgeElementForcesAndSourcesCoreSwitch
 Edge finite elementUser is implementing own operator at Gauss points level, by own object derived from EdgeElementForcesAndSourcesCoreL::UserDataOperator. Arbitrary number of operator added pushing objects to rowOpPtrVector and rowColOpPtrVector. More...
 
struct  EdgePolynomialBase
 Calculate base functions on tetrahedral. More...
 
struct  Ent_Ent_mi_tag
 
struct  Ent_FiniteElement_mi_tag
 
struct  Ent_mi_tag
 
struct  Ent_Owner_mi_tag
 
struct  Ent_ParallelStatus
 
struct  EntDofIdx_mi_tag
 
struct  EntFiniteElement
 Finite element data for entity. More...
 
struct  EntityCacheDofs
 
struct  EntityCacheNumeredDofs
 
struct  EntityMethod
 Data structure to exchange data between mofem and User Loop Methods on entities.It allows to exchange data between MoFEM and user functions. It stores information about multi-indices. More...
 
struct  EntityStorage
 
struct  EntPolynomialBaseCtx
 Class used to pass element data to calculate base functions on tet,triangle,edge. More...
 
struct  EntType_mi_tag
 
struct  EqBit
 
struct  EssentialBcStorage
 [Storage and set boundary conditions] More...
 
struct  FaceElementForcesAndSourcesCoreBase
 Face finite elementUser is implementing own operator at Gauss point level, by own object derived from FaceElementForcesAndSourcesCoreL::UserDataOperator. Arbitrary number of operator added pushing objects to OpPtrVector. More...
 
struct  FaceElementForcesAndSourcesCoreOnSideBase
 Base face element used to integrate on skeleton. More...
 
struct  FaceElementForcesAndSourcesCoreOnSideSwitch
 Face side finite element with switches. More...
 
struct  FaceElementForcesAndSourcesCoreSwitch
 Face finite element switched. More...
 
struct  FatPrismElementForcesAndSourcesCore
 FatPrism finite elementUser is implementing own operator at Gauss points level, by own object derived from FatPrismElementForcesAndSourcesCoreL::UserDataOperator. Arbitrary number of operator added pushing objects to rowOpPtrVector and rowColOpPtrVector. More...
 
struct  FatPrismPolynomialBase
 Calculate base functions on tetrahedralFIXME: Need moab and mofem finite element structure to work (that not perfect) More...
 
struct  FatPrismPolynomialBaseCtx
 Class used to pass element data to calculate base functions on fat prism. More...
 
struct  FE_Unique_mi_tag
 
struct  FEDofEntity
 keeps information about indexed dofs for the finite element More...
 
struct  FEEnt_mi_tag
 
struct  FEMethod
 structure for User Loop Methods on finite elementsIt can be used to calculate stiffness matrices, residuals, load vectors etc. It is low level class however in some class users looking for speed and efficiency, can use it directly. More...
 
struct  FENumeredDofEntity
 keeps information about indexed dofs for the finite element More...
 
struct  Field
 Provide data structure for (tensor) field approximation.The Field is intended to provide support for fields, with a strong bias towards supporting first and best the capabilities required for scientific computing applications. Since we work with discrete spaces, data structure has to carry information about type of approximation space, its regularity. More...
 
struct  FieldBlas
 Basic algebra on fields. More...
 
struct  FieldChangeCoordinateSystem
 Set field coordinate system. More...
 
struct  FieldEntity
 Struct keeps handle to entity in the field. More...
 
struct  FieldEntity_change_order
 structure to change FieldEntity order More...
 
struct  FieldEntityEntFiniteElementAdjacencyMap
 FieldEntityEntFiniteElementAdjacencyMap of mofem finite element and entities. More...
 
struct  FieldEntityEntFiniteElementAdjacencyMap_change_ByWhat
 
struct  FieldEvaluatorInterface
 Field evaluator interface. More...
 
struct  FieldName_mi_tag
 MultiIndex Tag for field name. More...
 
struct  FieldSeries
 Structure for recording (time) series. More...
 
struct  FieldSeriesStep
 Structure for keeping time and step. More...
 
struct  FiniteElement
 Finite element definition. More...
 
struct  FiniteElement_change_bit_add
 Add field to data. More...
 
struct  FiniteElement_change_bit_off
 Unset field from data. More...
 
struct  FiniteElement_change_bit_reset
 Reset field from data. More...
 
struct  FiniteElement_col_change_bit_add
 Add field to column. More...
 
struct  FiniteElement_col_change_bit_off
 Unset field from column. More...
 
struct  FiniteElement_col_change_bit_reset
 Reset field from column. More...
 
struct  FiniteElement_Meshset_mi_tag
 
struct  FiniteElement_name_mi_tag
 
struct  FiniteElement_row_change_bit_add
 Add field to row. More...
 
struct  FiniteElement_row_change_bit_off
 Unset field from row. More...
 
struct  FiniteElement_row_change_bit_reset
 Reset field from row. More...
 
struct  FlatPrismElementForcesAndSourcesCore
 FlatPrism finite elementUser is implementing own operator at Gauss points level, by own object derived from FlatPrismElementForcesAndSourcesCoreL::UserDataOperator. Arbitrary number of operator added pushing objects to rowOpPtrVector and rowColOpPtrVector. More...
 
struct  FlatPrismPolynomialBase
 Calculate base functions on tetrahedralFIXME: Need moab and mofem finite element structure to work (that not perfect) More...
 
struct  FlatPrismPolynomialBaseCtx
 Class used to pass element data to calculate base functions on flat prism. More...
 
struct  ForceCubitBcData
 Definition of the force bc data structure. More...
 
struct  ForcesAndSourcesCore
 structure to get information form mofem into DataForcesAndSourcesCore More...
 
struct  FormsIntegrators
 
struct  GenericAttributeData
 Generic attribute data structure. More...
 
struct  GenericCubitBcData
 Generic bc data structure. More...
 
struct  HashBit
 
struct  HeatFluxCubitBcData
 Definition of the heat flux bc data structure. More...
 
struct  HelmholtzElement
 struture grouping operators and data used for helmholtz problemsIn order to assemble matrices and right hand side vectors, the loops over elements, enetities over that elememnts and finally loop over intergration points are executed. More...
 
struct  Idx_mi_tag
 
struct  IdxDataType
 
struct  IdxDataTypePtr
 
struct  IntegratedJacobiPolynomial
 
struct  IntegratedJacobiPolynomialCtx
 
struct  interface_DofEntity
 Interface to DofEntity. More...
 
struct  interface_EntFiniteElement
 interface to EntFiniteElement More...
 
struct  interface_Field
 
struct  interface_Field< T, T >
 
struct  interface_FieldEntity
 Interface to FieldEntityinterface to FieldEntity. More...
 
struct  interface_FieldImpl
 Pointer interface for MoFEM::Field. More...
 
struct  interface_FieldSeries
 
struct  interface_FiniteElement
 
struct  interface_FiniteElement< T, T >
 
struct  interface_FiniteElementImpl
 Inetface for FE. More...
 
struct  interface_RefElement
 intrface to RefElement More...
 
struct  interface_RefEntity
 interface to RefEntity More...
 
struct  ISManager
 Section manager is used to create indexes and sectionsFIXME: ISManager is not properly testsed by atom tests. More...
 
struct  JacobiPolynomial
 Calculating Legendre base functions. More...
 
struct  JacobiPolynomialCtx
 Class used to give arguments to Legendre base functions. More...
 
struct  KernelLobattoPolynomial
 Calculating Lobatto base functions. More...
 
struct  KernelLobattoPolynomialCtx
 Class used to give arguments to Kernel Lobatto base functions. More...
 
struct  KeyFromKey
 
struct  KspCtx
 Interface for linear (KSP) solver. More...
 
struct  KspMethod
 data structure for ksp (linear solver) contextStruture stores context data which are set in functions run by PETSc SNES functions. More...
 
struct  LegendrePolynomial
 Calculating Legendre base functions. More...
 
struct  LegendrePolynomialCtx
 Class used to give arguments to Legendre base functions. More...
 
struct  LobattoPolynomial
 Calculating Lobatto base functions. More...
 
struct  LobattoPolynomialCtx
 Class used to give arguments to Lobatto base functions. More...
 
struct  LogManager
 Log manager is used to build and partition problems. More...
 
struct  LtBit
 
struct  Mat_Elastic
 Elastic material data structure. More...
 
struct  Mat_Elastic_EberleinHolzapfel1
 Mat_Elastic with Fibres. More...
 
struct  Mat_Elastic_TransIso
 Transverse Isotropic material data structure. More...
 
struct  Mat_Interf
 Linear interface data structure. More...
 
struct  Mat_Moisture
 moisture transport material data structure More...
 
struct  Mat_Thermal
 Thermal material data structure. More...
 
struct  MatrixManager
 Matrix manager is used to build and partition problems. More...
 
struct  MedInterface
 Interface for load MED files. More...
 
struct  MeshRefinement
 Mesh refinement interface. More...
 
struct  Meshset_mi_tag
 
struct  MeshsetsManager
 Interface for managing meshsets containing materials and boundary conditions. More...
 
struct  Modify_change_nothing
 Do nothing, used to rebuild database. More...
 
struct  MOFEMuuid
 MoFEM interface unique ID. More...
 
struct  NodeMergerInterface
 Merge node by collapsing edge between them. More...
 
struct  NormElement
 finite element to appeximate analytical solution on surface More...
 
struct  NumeredDofEntity
 keeps information about indexed dofs for the problemFIXME: Is too many iterator, this has to be manage more efficiently, some iterators could be moved to multi_indices views. More...
 
struct  NumeredDofEntity_local_idx_change
 
struct  NumeredDofEntity_mofem_index_change
 
struct  NumeredDofEntity_part_and_all_indices_change
 
struct  NumeredDofEntity_part_and_glob_idx_change
 
struct  NumeredDofEntity_part_and_indices_change
 
struct  NumeredDofEntity_part_and_mofem_glob_idx_change
 
struct  NumeredEntFiniteElement
 Partitioned (Indexed) Finite Element in Problem. More...
 
struct  NumeredEntFiniteElement_change_part
 Change finite element part. More...
 
struct  OpCalculateHcurlVectorCurl
 Calculate curl of vector field. More...
 
struct  OpCalculateHdivVectorDivergence
 Calculate divergence of vector field. More...
 
struct  OpCalculateHdivVectorField
 Get vector field for H-div approximation. More...
 
struct  OpCalculateHdivVectorField_General
 Get vector field for H-div approximation. More...
 
struct  OpCalculateHdivVectorField_General< Tensor_Dim, double, ublas::row_major, DoubleAllocator >
 Get vector field for H-div approximation. More...
 
struct  OpCalculateHTensorTensorField
 Calculate tenor field using vectorial base, i.e. Hdiv/Hcurl. More...
 
struct  OpCalculateHVecTensorDivergence
 Calculate divergence of tonsorial field using vectorial base. More...
 
struct  OpCalculateHVecTensorField
 Calculate tenor field using vectorial base, i.e. Hdiv/Hcurl. More...
 
struct  OpCalculateInvJacForFace
 Calculate inverse of jacobian for face element. More...
 
struct  OpCalculateInvJacForFatPrism
 Calculate inverse of jacobian for face element. More...
 
struct  OpCalculateInvJacForFlatPrism
 Calculate inverse of jacobian for face element. More...
 
struct  OpCalculateJacForFace
 Calculate jacobian for face element. More...
 
struct  OpCalculateScalarFieldGradient
 Get field gradients at integration pts for scalar filed rank 0, i.e. vector field. More...
 
struct  OpCalculateScalarFieldGradient_General
 Evaluate field gradient values for scalar field, i.e. gradient is tensor rank 1 (vector) More...
 
struct  OpCalculateScalarFieldGradient_General< Tensor_Dim, double, ublas::row_major, DoubleAllocator >
 Evaluate field gradient values for scalar field, i.e. gradient is tensor rank 1 (vector), specialization. More...
 
struct  OpCalculateScalarFieldValues
 Get value at integration points for scalar field. More...
 
struct  OpCalculateScalarFieldValues_General
 Scalar field values at integration points. More...
 
struct  OpCalculateScalarFieldValuesDot
 Get rate of scalar field at integration points. More...
 
struct  OpCalculateTensor2FieldValues
 Get values at integration pts for tensor filed rank 2, i.e. matrix field. More...
 
struct  OpCalculateTensor2FieldValues_General
 Calculate field values for tenor field rank 2. More...
 
struct  OpCalculateTensor2FieldValues_General< Tensor_Dim0, Tensor_Dim1, double, ublas::row_major, DoubleAllocator >
 
struct  OpCalculateTensor2FieldValuesDot
 Get time direvarive values at integration pts for tensor filed rank 2, i.e. matrix field. More...
 
struct  OpCalculateTensor2SymmetricFieldValues
 Calculate symmetric tensor field values at integration pts. More...
 
struct  OpCalculateTensor2SymmetricFieldValuesDot
 Calculate symmetric tensor field rates ant integratio pts. More...
 
struct  OpCalculateVectorFieldGradient
 Get field gradients at integration pts for scalar filed rank 0, i.e. vector field. More...
 
struct  OpCalculateVectorFieldGradient_General
 Evaluate field gradient values for vector field, i.e. gradient is tensor rank 2. More...
 
struct  OpCalculateVectorFieldGradient_General< Tensor_Dim0, Tensor_Dim1, double, ublas::row_major, DoubleAllocator >
 
struct  OpCalculateVectorFieldGradientDot
 Get field gradients time derivative at integration pts for scalar filed rank 0, i.e. vector field. More...
 
struct  OpCalculateVectorFieldValues
 Get values at integration pts for tensor filed rank 1, i.e. vector field. More...
 
struct  OpCalculateVectorFieldValues_General
 Calculate field values for tenor field rank 1, i.e. vector field. More...
 
struct  OpCalculateVectorFieldValues_General< Tensor_Dim, double, ublas::row_major, DoubleAllocator >
 Calculate field values (template specialization) for tensor field rank 1, i.e. vector field. More...
 
struct  OpCalculateVectorFieldValuesDot
 Get time direvatives of values at integration pts for tensor filed rank 1, i.e. vector field. More...
 
struct  OpGetCoordsAndNormalsOnFace
 Calculate normals at Gauss points of triangle element. More...
 
struct  OpGetCoordsAndNormalsOnPrism
 calculate normals at Gauss points of triangle element More...
 
struct  OpGetDataAndGradient
 Get field values and gradients at Gauss points. More...
 
struct  OpGetHoTangentOnEdge
 Calculate tangent vector on edge form HO geometry approximation. More...
 
struct  OpMakeHdivFromHcurl
 Make Hdiv space from Hcurl space in 2d. More...
 
struct  OpMultiplyDeterminantOfJacobianAndWeightsForFatPrisms
 Operator for fat prism element updating integration weights in the volume. More...
 
struct  OpSetBc
 Set indices on entities on finite element. More...
 
struct  OpSetContrariantPiolaTransformOnEdge
 
struct  OpSetContravariantPiolaTransform
 apply contravariant (Piola) transfer to Hdiv space More...
 
struct  OpSetContravariantPiolaTransformFace
 Apply contravariant (Piola) transfer to Hdiv space on face. More...
 
struct  OpSetContravariantPiolaTransformOnFace
 transform Hdiv base fluxes from reference element to physical triangle More...
 
struct  OpSetCovariantPiolaTransform
 apply covariant transfer to Hcurl space More...
 
struct  OpSetCovariantPiolaTransformOnEdge
 transform Hcurl base fluxes from reference element to physical edge More...
 
struct  OpSetCovariantPiolaTransformOnFace
 transform Hcurl base fluxes from reference element to physical triangle More...
 
struct  OpSetHoContravariantPiolaTransform
 Apply contravariant (Piola) transfer to Hdiv space for HO geometr. More...
 
struct  OpSetHoCovariantPiolaTransform
 Apply covariant (Piola) transfer to Hcurl space for HO geometry. More...
 
struct  OpSetHoInvJacH1
 transform local reference derivatives of shape function to global derivatives if higher order geometry is given More...
 
struct  OpSetHoInvJacHdivAndHcurl
 transform local reference derivatives of shape function to global derivatives if higher order geometry is given More...
 
struct  OpSetInvJacH1
 Transform local reference derivatives of shape function to global derivatives. More...
 
struct  OpSetInvJacH1ForFace
 Transform local reference derivatives of shape functions to global derivatives. More...
 
struct  OpSetInvJacH1ForFatPrism
 Transform local reference derivatives of shape functions to global derivatives. More...
 
struct  OpSetInvJacH1ForFlatPrism
 Transform local reference derivatives of shape functions to global derivatives. More...
 
struct  OpSetInvJacHcurlFace
 brief Transform local reference derivatives of shape function to global derivatives for face More...
 
struct  OpSetInvJacHdivAndHcurl
 brief Transform local reference derivatives of shape function to global derivatives More...
 
struct  OpTensorTimesSymmetricTensor
 Calculate \( \pmb\sigma_{ij} = \mathbf{D}_{ijkl} \pmb\varepsilon_{kl} \). More...
 
struct  OpUnSetBc
 
struct  Order_mi_tag
 MultiIndex Tag for field order. More...
 
struct  PairNameFEMethodPtr
 
struct  Part_mi_tag
 
struct  PetscData
 
struct  PetscGlobalIdx_mi_tag
 
struct  PetscLocalIdx_mi_tag
 
struct  PipelineManager
 PipelineManager interface. More...
 
struct  PressureCubitBcData
 Definition of the pressure bc data structure. More...
 
struct  PrismInterface
 Create interface from given surface and insert flat prisms in-between. More...
 
struct  PrismsFromSurfaceInterface
 merge node from two bit levels More...
 
struct  Problem
 keeps basic data about problemThis is low level structure with information about problem, what elements compose problem and what DOFs are on rows and columns. More...
 
struct  Problem_mi_tag
 
struct  ProblemChangeRefLevelBitAdd
 add ref level to problem More...
 
struct  ProblemChangeRefLevelBitDofMaskAdd
 set prof dof bit ref mask More...
 
struct  ProblemChangeRefLevelBitDofMaskSet
 set prof dof bit ref mask More...
 
struct  ProblemChangeRefLevelBitSet
 set ref level to problem More...
 
struct  ProblemClearComposedProblemData
 Clear composed problem data structure. More...
 
struct  ProblemClearNumeredFiniteElementsChange
 clear problem finite elements More...
 
struct  ProblemClearSubProblemData
 Clear sub-problem data structure. More...
 
struct  ProblemFiniteElementChangeBitAdd
 add finite element to problem More...
 
struct  ProblemFiniteElementChangeBitUnSet
 remove finite element from problem More...
 
struct  ProblemsManager
 Problem manager is used to build and partition problems. More...
 
struct  ProblemZeroNbColsChange
 zero nb. of DOFs in col More...
 
struct  ProblemZeroNbRowsChange
 zero nb. of DOFs in row More...
 
struct  Proc_mi_tag
 
struct  Projection10NodeCoordsOnField
 Projection of edge entities with one mid-node on hierarchical basis. More...
 
struct  ProjectionFieldOn10NodeTet
 
struct  QuadPolynomialBase
 Calculate base functions on triangle. More...
 
struct  RefElement
 keeps data about abstract refined finite element More...
 
struct  RefElement_EDGE
 keeps data about abstract EDGE finite element More...
 
struct  RefElement_MESHSET
 keeps data about abstract MESHSET finite element More...
 
struct  RefElement_PRISM
 keeps data about abstract PRISM finite element More...
 
struct  RefElement_TET
 keeps data about abstract TET finite element More...
 
struct  RefElement_VERTEX
 keeps data about abstract VERTEX finite element More...
 
struct  RefElementFace
 keeps data about abstract TRI finite element More...
 
struct  RefEntExtractor
 Extract entity handle form multi-index container. More...
 
struct  RefEntity_change_left_shift
 ref mofem entity, left shift More...
 
struct  RefEntity_change_parent
 change parentUse this function with care. Some other multi-indices can deponent on this. More...
 
struct  RefEntity_change_right_shift
 ref mofem entity, right shift More...
 
struct  RefEntityTmp
 
struct  RefEntityTmp< 0 >
 Struct keeps handle to refined handle. More...
 
struct  RefEntityTmp<-1 >
 
struct  SeriesID_mi_tag
 
struct  SeriesName_mi_tag
 
struct  SeriesRecorder
 
struct  SetBitRefLevelTool
 tool class with methods used more than twp times More...
 
struct  SetOtherGlobalGhostVector
 
struct  SetOtherLocalGhostVector
 
struct  SideNumber_mi_tag
 
struct  Simple
 Simple interface for fast problem set-up. More...
 
struct  SmartPetscObj
 intrusive_ptr for managing petsc objects More...
 
struct  SnesCtx
 Interface for nonlinear (SNES) solver. More...
 
struct  SnesMethod
 data structure for snes (nonlinear solver) contextStructure stores context data which are set in functions run by PETSc SNES functions. More...
 
struct  Space_mi_tag
 
struct  TemperatureCubitBcData
 Definition of the temperature bc data structure. More...
 
struct  TetGenInterface
 TetGen interface. More...
 
struct  TetPolynomialBase
 Calculate base functions on tetrahedral. More...
 
struct  Tools
 Auxiliary tools. More...
 
struct  TriPolynomialBase
 Calculate base functions on triangle. More...
 
struct  TsCtx
 Interface for Time Stepping (TS) solver. More...
 
struct  TSMethod
 data structure for TS (time stepping) contextStructure stores context data which are set in functions run by PETSc Time Stepping functions. More...
 
struct  Unique_Ent_mi_tag
 
struct  Unique_FiniteElement_mi_tag
 
struct  Unique_mi_tag
 
struct  UnknownInterface
 base class for all interface classes More...
 
struct  VecManager
 Vector manager is used to create vectors \mofem_vectors. More...
 
struct  VelocityCubitBcData
 Definition of the velocity bc data structure. More...
 
struct  Version
 
struct  VertexElementForcesAndSourcesCore
 Vertex finite elementUser is implementing own operator at Gauss points level, by own object derived from VertexElementForcesAndSourcesCoreL::UserDataOperator. Arbitrary number of operator added pushing objects to rowOpPtrVector and rowColOpPtrVector. More...
 
struct  VolumeElementForcesAndSourcesCoreBase
 Volume finite element baseUser is implementing own operator at Gauss point level, by class derived from VolumeElementForcesAndSourcesCore::UserDataOperator. Arbitrary number of operator can be added by pushing objects to OpPtrVector. More...
 
struct  VolumeElementForcesAndSourcesCoreOnContactPrismSideBase
 Base volume element used to integrate on contact surface (could be extended to other volume elements) mofem_forces_and_sources_volume_element. More...
 
struct  VolumeElementForcesAndSourcesCoreOnContactPrismSideSwitch
 Volume side finite element with switches. More...
 
struct  VolumeElementForcesAndSourcesCoreOnSideBase
 Base volume element used to integrate on skeleton. More...
 
struct  VolumeElementForcesAndSourcesCoreOnSideSwitch
 Volume side finite element with switches. More...
 
struct  VolumeElementForcesAndSourcesCoreSwitch
 Volume finite element with switches. More...
 

Typedefs

template<typename T >
using ShardVec = boost::shared_ptr< std::vector< T > >
 
using DofsAllocator = ublas::unbounded_array< FEDofEntity *, std::allocator< FEDofEntity * > >
 
using VectorDofs = ublas::vector< FEDofEntity *, DofsAllocator >
 
using FieldEntAllocator = ublas::unbounded_array< FieldEntity *, std::allocator< FieldEntity * > >
 
using VectorFieldEntities = ublas::vector< FieldEntity *, FieldEntAllocator >
 
using EdgeElementForcesAndSourcesCore = EdgeElementForcesAndSourcesCoreSwitch< 0 >
 Edge finite element default. More...
 
using FaceElementForcesAndSourcesCore = FaceElementForcesAndSourcesCoreSwitch< 0 >
 Face finite element default. More...
 
using VolumeElementForcesAndSourcesCore = VolumeElementForcesAndSourcesCoreSwitch< 0 >
 Volume finite element default. More...
 
using VolumeElementForcesAndSourcesCoreOnContactPrismSide = VolumeElementForcesAndSourcesCoreOnContactPrismSideSwitch< 0 >
 Volume element used to integrate on contact element (could be extended for other volume elements) mofem_forces_and_sources_volume_element. More...
 
using VolumeElementForcesAndSourcesCoreOnSide = VolumeElementForcesAndSourcesCoreOnSideSwitch< 0 >
 Volume element used to integrate on skeleton. More...
 
using Core = CoreTmp< 0 >
 
using Sev = MoFEM::LogManager::SeverityLevel
 
using Interface = DeprecatedCoreInterface
 
typedef CubitMeshSet_multiIndex::index< CubitMeshSets_mi_tag >::type CubitMeshsetByType
 
typedef CubitMeshSet_multiIndex::index< CubitMeshSets_mask_meshset_mi_tag >::type CubitMeshsetByMask
 
typedef CubitMeshSet_multiIndex::index< CubitMeshSets_name >::type CubitMeshsetByName
 
typedef CubitMeshSet_multiIndex::index< CubitMeshSets_mi_tag >::type CubitMeshsetById
 
typedef multi_index_container< CubitMeshSets, indexed_by< hashed_unique< tag< Meshset_mi_tag >, member< CubitMeshSets, EntityHandle, &CubitMeshSets::meshset > >, ordered_non_unique< tag< CubitMeshSets_mi_tag >, const_mem_fun< CubitMeshSets, unsigned long int, &CubitMeshSets::getBcTypeULong > >, ordered_non_unique< tag< CubitMeshSets_mask_meshset_mi_tag >, const_mem_fun< CubitMeshSets, unsigned long int, &CubitMeshSets::getMaksedBcTypeULong > >, ordered_non_unique< tag< CubitMeshSets_name >, const_mem_fun< CubitMeshSets, std::string, &CubitMeshSets::getName > >, hashed_unique< tag< Composite_Cubit_msId_And_MeshSetType_mi_tag >, composite_key< CubitMeshSets, const_mem_fun< CubitMeshSets, int, &CubitMeshSets::getMeshsetId >, const_mem_fun< CubitMeshSets, unsigned long int, &CubitMeshSets::getMaksedBcTypeULong > > > > > CubitMeshSet_multiIndex
 Stores data about meshsets (see CubitMeshSets) storing data about boundary conditions, interfaces, sidesets, nodests, blocksets. More...
 
typedef multi_index_container< boost::shared_ptr< CoordSys >, indexed_by< ordered_unique< tag< Meshset_mi_tag >, member< CoordSys, EntityHandle, &CoordSys::meshSet > >, ordered_unique< tag< CoordSysName_mi_tag >, const_mem_fun< CoordSys, boost::string_ref, &CoordSys::getNameRef > > > > CoordSys_multiIndex
 
using DofEntityByUId = DofEntity_multiIndex::index< Unique_mi_tag >::type
 
using DofEntityByEnt = DofEntity_multiIndex::index< Ent_mi_tag >::type
 Dof multi-index by entity. More...
 
using DofEntity_multiIndex_uid_view = multi_index_container< boost::shared_ptr< DofEntity >, indexed_by< ordered_unique< const_mem_fun< DofEntity, UId, &DofEntity::getLocalUniqueId > > > >
 multi-index view on DofEntity by uid More...
 
using DofEntity_multiIndex_global_uid_view = multi_index_container< boost::shared_ptr< DofEntity >, indexed_by< ordered_unique< const_mem_fun< DofEntity, UId, &DofEntity::getGlobalUniqueId > > > >
 multi-index view on DofEntity by uid More...
 
typedef std::vector< boost::weak_ptr< DofEntity > > DofEntity_vector_view
 vector view on DofEntity by uid More...
 
typedef multi_index_container< boost::shared_ptr< DofEntity >, indexed_by< ordered_unique< const_mem_fun< DofEntity, UId, &DofEntity::getLocalUniqueId > >, ordered_non_unique< const_mem_fun< DofEntity, char, &DofEntity::getActive > > > > DofEntity_multiIndex_active_view
 multi-index view on DofEntity activity More...
 
using FEDofEntityByUId = FEDofEntity_multiIndex::index< Unique_mi_tag >::type
 Dof entity multi-index by UId and entity. More...
 
using FENumeredDofEntityByUId = FENumeredDofEntity_multiIndex::index< Unique_mi_tag >::type
 Dof entity multi-index by UId. More...
 
using FENumeredDofEntityByEnt = FENumeredDofEntity_multiIndex::index< Ent_mi_tag >::type
 Numbered DoF multi-index by entity. More...
 
using NumeredDofEntityByUId = NumeredDofEntity_multiIndex::index< Unique_mi_tag >::type
 Numbered DoF multi-index by UId. More...
 
using NumeredDofEntityByLocalIdx = NumeredDofEntity_multiIndex::index< PetscLocalIdx_mi_tag >::type
 Numbered DoF multi-index by local index. More...
 
using NumeredDofEntityByEnt = NumeredDofEntity_multiIndex::index< Ent_mi_tag >::type
 Numbered DoF multi-index by entity. More...
 
using NumeredDofEntity_multiIndex_uid_view_ordered = multi_index_container< boost::shared_ptr< NumeredDofEntity >, indexed_by< ordered_unique< const_mem_fun< NumeredDofEntity::interface_type_DofEntity, UId, &NumeredDofEntity::getLocalUniqueId > > > >
 
using NumeredDofEntity_multiIndex_idx_view_hashed = multi_index_container< boost::shared_ptr< NumeredDofEntity >, indexed_by< hashed_unique< const_mem_fun< NumeredDofEntity, DofIdx, &NumeredDofEntity::getDofIdx > >> >
 
using NumeredDofEntity_multiIndex_petsc_local_dof_view_ordered_non_unique = multi_index_container< boost::shared_ptr< NumeredDofEntity >, indexed_by< ordered_non_unique< const_mem_fun< NumeredDofEntity, DofIdx, &NumeredDofEntity::getPetscLocalDofIdx > >> >
 
using NumeredDofEntity_multiIndex_coeff_idx_ordered_non_unique = multi_index_container< boost::shared_ptr< NumeredDofEntity >, indexed_by< ordered_non_unique< const_mem_fun< NumeredDofEntity::interface_type_DofEntity, FieldCoefficientsNumber, &NumeredDofEntity::getDofCoeffIdx > >> >
 
typedef boost::function< MoFEMErrorCode(Interface &moab, const Field &field, const EntFiniteElement &fe, Range &adjacency)> ElementAdjacencyFunct
 user adjacency function More...
 
using CacheTuple = std::tuple< std::vector< EntityCacheDofs >, std::vector< EntityCacheNumeredDofs >, std::vector< EntityCacheNumeredDofs > >
 
using CacheTupleWeakPtr = boost::weak_ptr< CacheTuple >
 
using CacheTupleSharedPtr = boost::shared_ptr< CacheTuple >
 
typedef EntFiniteElement_multiIndex::index< FiniteElement_name_mi_tag >::type EntFiniteElementByName
 Entity finite element multi-index by finite element name. More...
 
typedef NumeredEntFiniteElement_multiIndex::index< FiniteElement_name_mi_tag >::type NumeredEntFiniteElementbyName
 Entity finite element multi-index by finite element name. More...
 
typedef NumeredEntFiniteElement_multiIndex::index< Composite_Name_And_Part_mi_tag >::type NumeredEntFiniteElementbyNameAndPart
 Entity finite element multi-index by finite element name and partition. More...
 
using FieldEntityByUId = FieldEntity_multiIndex::index< Unique_mi_tag >::type
 Entity index by field name. More...
 
typedef multi_index_container< boost::shared_ptr< FieldEntity >, indexed_by< sequenced<>, ordered_non_unique< tag< Ent_mi_tag >, const_mem_fun< FieldEntity::interface_type_RefEntity, EntityHandle, &FieldEntity::getEnt > > > > FieldEntity_multiIndex_ent_view
 
typedef multi_index_container< boost::shared_ptr< FieldEntity >, indexed_by< sequenced<>, ordered_non_unique< tag< Composite_EntType_and_Space_mi_tag >, composite_key< FieldEntity, const_mem_fun< FieldEntity::interface_type_RefEntity, EntityType, &FieldEntity::getEntType >, const_mem_fun< FieldEntity::interface_type_Field, FieldSpace, &FieldEntity::getSpace > > > > > FieldEntity_multiIndex_spaceType_view
 
typedef std::vector< boost::weak_ptr< FieldEntity > > FieldEntity_vector_view
 
typedef boost::function< int(const int order)> FieldOrderFunct
 user adjacency function More...
 
typedef FieldOrderFunct FieldOrderTable[MBMAXTYPE]
 user adjacency function table More...
 
typedef multi_index_container< boost::shared_ptr< Field >, indexed_by< ordered_unique< tag< BitFieldId_mi_tag >, const_mem_fun< Field, const BitFieldId &, &Field::getId >, LtBit< BitFieldId > > > > Field_multiIndex_view
 
typedef multi_index_container< boost::shared_ptr< RefElement >, indexed_by< ordered_unique< tag< Ent_mi_tag >, const_mem_fun< RefElement::interface_type_RefEntity, EntityHandle, &RefElement::getEnt > > > > RefElement_multiIndex
 
typedef multi_index_container< boost::shared_ptr< RefElement >, indexed_by< ordered_unique< tag< Ent_mi_tag >, const_mem_fun< RefElement::interface_type_RefEntity, EntityHandle, &RefElement::getEnt > >, ordered_non_unique< tag< Ent_Ent_mi_tag >, const_mem_fun< RefElement::interface_type_RefEntity, EntityHandle, &RefElement::getParentEnt > >, ordered_non_unique< tag< Composite_ParentEnt_And_BitsOfRefinedEdges_mi_tag >, composite_key< RefElement, const_mem_fun< RefElement::interface_type_RefEntity, EntityHandle, &RefElement::getParentEnt >, const_mem_fun< RefElement, int, &RefElement::getBitRefEdgesUlong > > > > > RefElement_multiIndex_parents_view
 
using RefEntity = RefEntityTmp< 0 >
 
using RefEntity_multiIndex = multi_index_container< boost::shared_ptr< RefEntity >, indexed_by< ordered_unique< tag< Ent_mi_tag >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getEnt > >, ordered_non_unique< tag< Ent_Ent_mi_tag >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getParentEnt > >, ordered_non_unique< tag< Composite_EntType_and_ParentEntType_mi_tag >, composite_key< RefEntity, const_mem_fun< RefEntity, EntityType, &RefEntity::getEntType >, const_mem_fun< RefEntity, EntityType, &RefEntity::getParentEntType > > >, ordered_non_unique< tag< Composite_ParentEnt_And_EntType_mi_tag >, composite_key< RefEntity, const_mem_fun< RefEntity, EntityType, &RefEntity::getEntType >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getParentEnt > >> > >
 
using RefEntity_multiIndex_view_by_hashed_parent_entity = multi_index_container< boost::shared_ptr< RefEntity >, indexed_by< hashed_non_unique< const_mem_fun< RefEntity, EntityHandle, &RefEntity::getParentEnt > >, hashed_unique< tag< Composite_EntType_and_ParentEntType_mi_tag >, composite_key< boost::shared_ptr< RefEntity >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getEnt >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getParentEnt > >> > >
 multi-index view of RefEntity by parent entity More...
 
using RefEntity_multiIndex_view_by_ordered_parent_entity = multi_index_container< boost::shared_ptr< RefEntity >, indexed_by< ordered_non_unique< const_mem_fun< RefEntity, EntityHandle, &RefEntity::getParentEnt > >, hashed_unique< tag< Composite_EntType_and_ParentEntType_mi_tag >, composite_key< boost::shared_ptr< RefEntity >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getEnt >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getParentEnt > >> > >
 
using RefEntity_multiIndex_view_sequence_ordered_view = multi_index_container< boost::shared_ptr< RefEntity >, indexed_by< sequenced<>, ordered_unique< tag< Ent_mi_tag >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getEnt > >> >
 
typedef multi_index_container< FieldSeries, indexed_by< ordered_unique< tag< SeriesID_mi_tag >, const_mem_fun< FieldSeries, EntityID, &FieldSeries::get_meshset_id > >, ordered_unique< tag< SeriesName_mi_tag >, const_mem_fun< FieldSeries, boost::string_ref, &FieldSeries::getNameRef > > > > Series_multiIndex
 Series multi index. More...
 
typedef multi_index_container< FieldSeriesStep, indexed_by< ordered_unique< tag< Composite_SeriesID_And_Step_mi_tag >, composite_key< FieldSeriesStep, const_mem_fun< FieldSeriesStep::interface_type_FieldSeries, EntityID, &FieldSeriesStep::get_meshset_id >, member< FieldSeriesStep, int, &FieldSeriesStep::step_number > > >, ordered_unique< tag< Composite_SeriesName_And_Step_mi_tag >, composite_key< FieldSeriesStep, const_mem_fun< FieldSeriesStep::interface_type_FieldSeries, boost::string_ref, &FieldSeriesStep::getNameRef >, member< FieldSeriesStep, int, &FieldSeriesStep::step_number > > >, ordered_non_unique< tag< SeriesName_mi_tag >, const_mem_fun< FieldSeriesStep::interface_type_FieldSeries, boost::string_ref, &FieldSeriesStep::getNameRef > >, ordered_non_unique< tag< Composite_SeriesName_And_Time_mi_tag >, composite_key< FieldSeriesStep, const_mem_fun< FieldSeriesStep::interface_type_FieldSeries, boost::string_ref, &FieldSeriesStep::getNameRef >, const_mem_fun< FieldSeriesStep, double, &FieldSeriesStep::get_time > > > > > SeriesStep_multiIndex
 Step multi index. More...
 
typedef std::vector< PairNameFEMethodPtrFEMethodsSequence
 
typedef std::vector< BasicMethodPtrBasicMethodsSequence
 
Scalar values
using OpCalculateScalarValuesDot = OpCalculateScalarFieldValuesDot
 

Enumerations

enum  AssemblyType { PETSC }
 [Storage and set boundary conditions] More...
 
enum  IntegrationType { GAUSS }
 

Functions

PetscErrorCode PetscOptionsGetInt (PetscOptions *, const char pre[], const char name[], PetscInt *ivalue, PetscBool *set)
 
PetscErrorCode PetscOptionsGetReal (PetscOptions *, const char pre[], const char name[], PetscReal *dval, PetscBool *set)
 
PetscErrorCode PetscOptionsGetScalar (PetscOptions *, const char pre[], const char name[], PetscScalar *dval, PetscBool *set)
 
PetscErrorCode PetscOptionsGetString (PetscOptions *, const char pre[], const char name[], char str[], size_t size, PetscBool *set)
 
PetscErrorCode PetscOptionsGetBool (PetscOptions *, const char pre[], const char name[], PetscBool *bval, PetscBool *set)
 
PetscErrorCode PetscOptionsGetRealArray (PetscOptions *, const char pre[], const char name[], PetscReal dval[], PetscInt *nmax, PetscBool *set)
 
PetscErrorCode PetscOptionsGetEList (PetscOptions *, const char pre[], const char name[], const char *const *list, PetscInt next, PetscInt *value, PetscBool *set)
 
PetscErrorCode PetscOptionsGetIntArray (PetscOptions options, const char pre[], const char name[], PetscInt dvalue[], PetscInt *nmax, PetscBool *set)
 
PetscErrorCode PetscOptionsGetScalarArray (PetscOptions options, const char pre[], const char name[], PetscScalar dvalue[], PetscInt *nmax, PetscBool *set)
 
template<typename T1 >
auto getVectorAdaptor (T1 ptr, const size_t n)
 Get Vector adaptor. More...
 
template<typename T1 >
auto getMatrixAdaptor (T1 ptr, const size_t n, const size_t m)
 Get Matrix adaptor. More...
 
template<class X >
std::string toString (X x)
 
template<class T , class A >
static FTensor::Tensor0< FTensor::PackPtr< double *, 1 > > getFTensor0FromVec (ublas::vector< T, A > &data)
 Get tensor rank 0 (scalar) form data vector. More...
 
template<>
FTensor::Tensor0< FTensor::PackPtr< double *, 1 > > getFTensor0FromVec< double, DoubleAllocator > (ublas::vector< double, DoubleAllocator > &data)
 
template<int Tensor_Dim, class T , class L , class A >
static FTensor::Tensor1< FTensor::PackPtr< T *, 1 >, Tensor_Dim > getFTensor1FromMat (ublas::matrix< T, L, A > &data)
 Get tensor rank 1 (vector) form data matrix. More...
 
template<int Tensor_Dim>
static FTensor::Tensor1< FTensor::PackPtr< double *, 1 >, Tensor_Dim > getFTensor1FromMat (MatrixDouble &data)
 Get tensor rank 1 (vector) form data matrix (specialization) More...
 
template<>
FTensor::Tensor1< FTensor::PackPtr< double *, 1 >, 3 > getFTensor1FromMat< 3, double, ublas::row_major, DoubleAllocator > (MatrixDouble &data)
 
template<>
FTensor::Tensor1< FTensor::PackPtr< double *, 1 >, 2 > getFTensor1FromMat< 2, double, ublas::row_major, DoubleAllocator > (MatrixDouble &data)
 
template<int Tensor_Dim0, int Tensor_Dim1, class T , class L , class A >
static FTensor::Tensor2< FTensor::PackPtr< T *, 1 >, Tensor_Dim0, Tensor_Dim1 > getFTensor2FromMat (ublas::matrix< T, L, A > &data)
 Get tensor rank 2 (matrix) form data matrix. More...
 
template<>
FTensor::Tensor2< FTensor::PackPtr< double *, 1 >, 3, 3 > getFTensor2FromMat (MatrixDouble &data)
 
template<>
FTensor::Tensor2< FTensor::PackPtr< double *, 1 >, 3, 2 > getFTensor2FromMat (MatrixDouble &data)
 
template<>
FTensor::Tensor2< FTensor::PackPtr< double *, 1 >, 2, 2 > getFTensor2FromMat (MatrixDouble &data)
 
template<int Tensor_Dim0, int Tensor_Dim1>
static FTensor::Tensor2< FTensor::PackPtr< double *, 1 >, Tensor_Dim0, Tensor_Dim1 > getFTensor2FromMat (MatrixDouble &data)
 Get tensor rank 2 (matrix) form data matrix (specialization) More...
 
template<int Tensor_Dim, class T , class L , class A >
static FTensor::Tensor2_symmetric< FTensor::PackPtr< T *, 1 >, Tensor_Dim > getFTensor2SymmetricFromMat (ublas::matrix< T, L, A > &data)
 Get symmetric tensor rank 2 (matrix) form data matrix. More...
 
template<>
FTensor::Tensor2_symmetric< FTensor::PackPtr< double *, 1 >, 3 > getFTensor2SymmetricFromMat (MatrixDouble &data)
 Get symmetric tensor rank 2 form matrix of for dimension 3. More...
 
template<>
FTensor::Tensor2_symmetric< FTensor::PackPtr< double *, 1 >, 2 > getFTensor2SymmetricFromMat (MatrixDouble &data)
 Get symmetric tensor rank 2 form matrix of for dimension 2. More...
 
template<int Tensor_Dim>
static FTensor::Tensor2_symmetric< FTensor::PackPtr< double *, 1 >, Tensor_Dim > getFTensor2SymmetricFromMat (MatrixDouble &data)
 Get symmetric tensor rank 2 form matrix. More...
 
template<int Tensor_Dim01, int Tensor_Dim23, class T , class L , class A >
static FTensor::Ddg< FTensor::PackPtr< T *, 1 >, Tensor_Dim01, Tensor_Dim23 > getFTensor4DdgFromMat (ublas::matrix< T, L, A > &data)
 Get symmetric tensor rank 4 on first two and last indices from form data matrix. More...
 
template<>
FTensor::Ddg< FTensor::PackPtr< double *, 1 >, 1, 1 > getFTensor4DdgFromMat (MatrixDouble &data)
 Get symmetric tensor rank 4 on first two and last indices from form data matrix. More...
 
template<>
FTensor::Ddg< FTensor::PackPtr< double *, 1 >, 2, 2 > getFTensor4DdgFromMat (MatrixDouble &data)
 Get symmetric tensor rank 4 on first two and last indices from form data matrix. More...
 
template<>
FTensor::Ddg< FTensor::PackPtr< double *, 1 >, 3, 3 > getFTensor4DdgFromMat (MatrixDouble &data)
 Get symmetric tensor rank 4 on first two and last indices from form data matrix. More...
 
template<int DIM>
FTensor::Tensor1< FTensor::PackPtr< double *, DIM >, DIM > getFTensor1FromPtr (double *ptr)
 Make Tensor1 from pointer. More...
 
template<>
FTensor::Tensor1< FTensor::PackPtr< double *, 3 >, 3 > getFTensor1FromPtr< 3 > (double *ptr)
 
template<int DIM1, int DIM2>
FTensor::Tensor2< FTensor::PackPtr< double *, DIM1 *DIM2 >, DIM1, DIM2 > getFTensor2FromPtr (double *ptr)
 Make Tensor2 from pointer. More...
 
template<>
FTensor::Tensor2< FTensor::PackPtr< double *, 6 >, 3, 2 > getFTensor2FromPtr< 3, 2 > (double *ptr)
 
template<>
FTensor::Tensor2< FTensor::PackPtr< double *, 9 >, 3, 3 > getFTensor2FromPtr< 3, 3 > (double *ptr)
 
template<class T >
static double dEterminant (T &t)
 Calculate the determinant of a 3x3 matrix or a tensor of rank 2. More...
 
template<int Tensor_Dim, class T , class L , class A >
MoFEMErrorCode invertTensor3by3 (ublas::matrix< T, L, A > &jac_data, ublas::vector< T, A > &det_data, ublas::matrix< T, L, A > &inv_jac_data)
 Calculate inverse of tensor rank 2 at integration points. More...
 
template<>
MoFEMErrorCode invertTensor3by3< 3, double, ublas::row_major, DoubleAllocator > (MatrixDouble &jac_data, VectorDouble &det_data, MatrixDouble &inv_jac_data)
 
template<class T1 , class T2 >
MoFEMErrorCode determinantTensor3by3 (T1 &t, T2 &det)
 Calculate determinant 3 by 3. More...
 
template<class T1 , class T2 >
MoFEMErrorCode determinantTensor2by2 (T1 &t, T2 &det)
 Calculate determinant 2 by 2. More...
 
template<class T1 , class T2 , class T3 >
MoFEMErrorCode invertTensor3by3 (T1 &t, T2 &det, T3 &inv_t)
 Calculate matrix inverse 3 by 3. More...
 
template<class T1 , class T2 , class T3 >
MoFEMErrorCode invertTensor2by2 (T1 &t, T2 &det, T3 &inv_t)
 Calculate matrix inverse 2 by 2. More...
 
template<typename Extractor , typename Iterator >
moab::Range::iterator insertOrdered (Range &r, Extractor, Iterator begin_iter, Iterator end_iter)
 Insert ordered mofem multi-index into range. More...
 
template<typename MI , typename MO = Modify_change_nothing>
MoFEMErrorCode reconstructMultiIndex (const MI &mi, MO &&mo=Modify_change_nothing())
 Template used to reconstruct multi-index. More...
 
void tet_type_6 (moab::Interface &moab, const EntityHandle *conn, const EntityHandle *edge_new_nodes, EntityHandle *new_tets_conn)
 
int tet_type_5 (moab::Interface &moab, const EntityHandle *conn, const EntityHandle *edge_new_nodes, EntityHandle *new_tets_conn)
 
int tet_type_4 (const EntityHandle *conn, const int *split_edges, const EntityHandle *edge_new_nodes, EntityHandle *new_tets_conn)
 
int tet_type_3 (const EntityHandle *conn, const int *split_edges, const EntityHandle *edge_new_nodes, EntityHandle *new_tets_conn)
 
int tet_type_2 (const EntityHandle *conn, const int *split_edges, const EntityHandle *edge_new_nodes, EntityHandle *new_tets_conn)
 
void tet_type_1 (const EntityHandle *conn, const int split_edge, const EntityHandle edge_new_node, EntityHandle *new_tets_conn)
 
MoFEMErrorCode tri_type_3 (const EntityHandle *conn, const BitRefEdges split_edges, const EntityHandle *edge_new_nodes, EntityHandle *new_tris_conn)
 
MoFEMErrorCode prism_type_1 (const EntityHandle *conn, const BitRefEdges split_edges, const EntityHandle *edge_new_nodes, EntityHandle *new_prism_conn)
 
MoFEMErrorCode prism_type_2 (const EntityHandle *conn, const BitRefEdges split_edges, const EntityHandle *edge_new_nodes, EntityHandle *new_prism_conn)
 
MoFEMErrorCode prism_type_3 (const EntityHandle *conn, const BitRefEdges split_edges, const EntityHandle *edge_new_nodes, EntityHandle *new_prism_conn)
 
MoFEMErrorCode Hcurl_Ainsworth_EdgeBaseFunctions_MBTET (int *sense, int *p, double *N, double *diffN, double *edgeN[], double *diff_edgeN[], int nb_integration_pts, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
 Edge based H-curl base functions on tetrahedral. More...
 
MoFEMErrorCode Hcurl_Ainsworth_EdgeBaseFunctions_MBTET_ON_EDGE (int sense, int p, double *N, double *diffN, double *edgeN, double *diff_edgeN, int nb_integration_pts, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
 Edge based H-curl base functions on edge. More...
 
MoFEMErrorCode Hcurl_Ainsworth_EdgeBaseFunctions_MBTET_ON_FACE (int *sense, int *p, double *N, double *diffN, double *edgeN[], double *diff_edgeN[], int nb_integration_pts, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
 Edge based H-curl base functions on face. More...
 
MoFEMErrorCode Hcurl_Ainsworth_EdgeBasedFaceFunctions_MBTET (int *faces_nodes, int *p, double *N, double *diffN, double *phi_f_e[4][3], double *diff_phi_f_e[4][3], int nb_integration_pts, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
 Face edge base functions of Hcurl space on tetrahedral. More...
 
MoFEMErrorCode Hcurl_Ainsworth_EdgeBasedFaceFunctions_MBTET_ON_FACE (int *faces_nodes, int p, double *N, double *diffN, double *phi_f_e[3], double *diff_phi_f_e[3], int nb_integration_pts, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
 Face edge base functions of Hcurl space. More...
 
MoFEMErrorCode Hcurl_Ainsworth_BubbleFaceFunctions_MBTET (int *faces_nodes, int *p, double *N, double *diffN, double *phi_f[4], double *diff_phi_f[4], int nb_integration_pts, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
 Face edge base functions of Hcurl space on face on tetrahedral. More...
 
MoFEMErrorCode Hcurl_Ainsworth_BubbleFaceFunctions_MBTET_ON_FACE (int *faces_nodes, int p, double *N, double *diffN, double *phi_f, double *diff_phi_f, int nb_integration_pts, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
 Face edge base functions of Hcurl space on face. More...
 
MoFEMErrorCode Hcurl_Ainsworth_FaceInteriorFunctions_MBTET (int *faces_nodes, int p, double *N, double *diffN, double *phi_v, double *diff_phi_v, int nb_integration_pts, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
 Face base interior function. More...
 
MoFEMErrorCode Hcurl_Ainsworth_VolumeInteriorFunctions_MBTET (int p, double *N, double *diffN, double *phi_v, double *diff_phi_v, int nb_integration_pts, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
 Volume interior function. More...
 
MoFEMErrorCode Hcurl_Ainsworth_FaceFunctions_MBTET (int *face_nodes, int *p, double *N, double *diffN, double *phi_f[4], double *diff_phi_f[4], int nb_integration_pts, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
 Face H-curl functions. More...
 
MoFEMErrorCode Hcurl_Ainsworth_FaceFunctions_MBTET_ON_FACE (int *faces_nodes, int p, double *N, double *diffN, double *phi_f, double *diff_phi_f, int nb_integration_pts, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
 Face H-curl functions. More...
 
MoFEMErrorCode Hcurl_Ainsworth_VolumeFunctions_MBTET (int p, double *N, double *diffN, double *phi_v, double *diff_phi_v, int nb_integration_pts, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
 H-curl volume base functions. More...
 
MoFEMErrorCode Hcurl_Demkowicz_EdgeBaseFunctions_MBTET (int *sense, int *p, double *n, double *diff_n, double *phi[], double *diff_phi[], int nb_integration_pts)
 Edge based H-curl base functions on tetrahedral. More...
 
MoFEMErrorCode Hcurl_Demkowicz_EdgeBaseFunctions_MBTRI (int *sense, int *p, double *n, double *diff_n, double *phi[], double *diff_phi[], int nb_integration_pts)
 Edge based H-curl base functions on teriangle. More...
 
MoFEMErrorCode Hcurl_Demkowicz_EdgeBaseFunctions_MBEDGE (int sense, int p, double *n, double *diff_n, double *phi, double *diff_phi, int nb_integration_pts)
 Edge based H-curl base functions on edge. More...
 
MoFEMErrorCode Hcurl_Demkowicz_FaceBaseFunctions_MBTET (int *faces_nodes, int *p, double *n, double *diff_n, double *phi[], double *diff_phi[], int nb_integration_pts)
 Face base interior function. More...
 
MoFEMErrorCode Hcurl_Demkowicz_FaceBaseFunctions_MBTRI (int *faces_nodes, int p, double *n, double *diff_n, double *phi, double *diff_phi, int nb_integration_pts)
 Face base interior function. More...
 
MoFEMErrorCode Hcurl_Demkowicz_VolumeBaseFunctions_MBTET (int p, double *n, double *diff_n, double *phi, double *diff_phi, int nb_integration_pts)
 Volume base interior function. More...
 
MoFEMErrorCode Hdiv_Ainsworth_EdgeFaceShapeFunctions_MBTET (int *faces_nodes, int *p, double *N, double *diffN, double *phi_f_e[4][3], double *diff_phi_f_e[4][3], int gdim, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
 Hdiv base functions, Edge-based face functions by Ainsworth [1]. More...
 
MoFEMErrorCode Hdiv_Ainsworth_EdgeFaceShapeFunctions_MBTET_ON_FACE (int *faces_nodes, int p, double *N, double *diffN, double *phi_f_e[3], double *diff_phi_f_e[3], int gdim, int nb, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
 Hdiv base functions, Edge-based face functions by Ainsworth [1]. More...
 
MoFEMErrorCode Hdiv_Ainsworth_FaceBubbleShapeFunctions (int *faces_nodes, int *p, double *N, double *diffN, double *phi_f[], double *diff_phi_f[], int gdim, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
 Face bubble functions by Ainsworth [1]. More...
 
MoFEMErrorCode Hdiv_Ainsworth_FaceBubbleShapeFunctions_ON_FACE (int *faces_nodes, int p, double *N, double *diffN, double *phi_f, double *diff_phi_f, int gdim, int nb, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
 Face bubble functions by Ainsworth [1]. More...
 
MoFEMErrorCode Hdiv_Ainsworth_EdgeBasedVolumeShapeFunctions_MBTET (int p, double *N, double *diffN, double *phi_v_e[6], double *diff_phi_v_e[6], int gdim, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
 Hdiv base function, Edge-based interior (volume) functions by Ainsworth [1]. More...
 
MoFEMErrorCode Hdiv_Ainsworth_FaceBasedVolumeShapeFunctions_MBTET (int p, double *N, double *diffN, double *phi_v_f[], double *diff_phi_v_f[], int gdim, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
 
MoFEMErrorCode Hdiv_Ainsworth_VolumeBubbleShapeFunctions_MBTET (int p, double *N, double *diffN, double *phi_v, double *diff_phi_v, int gdim, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
 Interior bubble functions by Ainsworth [1]. More...
 
MoFEMErrorCode Hdiv_Demkowicz_Face_MBTET_ON_FACE (int *faces_nodes, int p, double *N, double *diffN, double *phi_f, double *diff_phi_f, int gdim, int nb)
 
MoFEMErrorCode Hdiv_Demkowicz_Interior_MBTET (int p, double *N, double *diffN, int p_face[], double *phi_f[4], double *diff_phi_f[4], double *phi_v, double *diff_phi_v, int gdim)
 
template<class TYPE >
static MoFEMErrorCode get_value (MatrixDouble &pts_x, MatrixDouble &pts_t, TYPE *ctx)
 
template<typename T = EntityStorage>
MoFEMErrorCode VecSetValues (Vec V, const DataForcesAndSourcesCore::EntData &data, const double *ptr, InsertMode iora)
 Assemble PETSc vector. More...
 
template<>
MoFEMErrorCode VecSetValues< EntityStorage > (Vec V, const DataForcesAndSourcesCore::EntData &data, const double *ptr, InsertMode iora)
 
template<typename T = EntityStorage>
MoFEMErrorCode MatSetValues (Mat M, const DataForcesAndSourcesCore::EntData &row_data, const DataForcesAndSourcesCore::EntData &col_data, const double *ptr, InsertMode iora)
 Assemble PETSc matrix. More...
 
template<>
MoFEMErrorCode MatSetValues< EntityStorage > (Mat M, const DataForcesAndSourcesCore::EntData &row_data, const DataForcesAndSourcesCore::EntData &col_data, const double *ptr, InsertMode iora)
 
template<>
MoFEMErrorCode VecSetValues< EssentialBcStorage > (Vec V, const DataForcesAndSourcesCore::EntData &data, const double *ptr, InsertMode iora)
 Set values to vector in operator. More...
 
template<>
MoFEMErrorCode MatSetValues< EssentialBcStorage > (Mat M, const DataForcesAndSourcesCore::EntData &row_data, const DataForcesAndSourcesCore::EntData &col_data, const double *ptr, InsertMode iora)
 Set valyes to matrix in operator. More...
 
static void constructor_data (DataForcesAndSourcesCore *data, const EntityType type)
 
static void constructor_derived_data (DerivedDataForcesAndSourcesCore *derived_data, const boost::shared_ptr< DataForcesAndSourcesCore > &data_ptr)
 
std::ostream & operator<< (std::ostream &os, const DataForcesAndSourcesCore::EntData &e)
 
std::ostream & operator<< (std::ostream &os, const DataForcesAndSourcesCore &e)
 
static auto cmp_uid_lo (const boost::weak_ptr< FieldEntity > &a, const UId &b)
 
static auto cmp_uid_hi (const UId &b, const boost::weak_ptr< FieldEntity > &a)
 
template<typename ENTMULTIINDEX >
static int getMaxOrder (const ENTMULTIINDEX &multi_index)
 
template<class T >
static auto get_sub_iface_options_imp (T *const ptr, int) -> decltype(ptr->getSubInterfaceOptions())
 
template<class T >
static auto get_sub_iface_options_imp (T *const ptr, long) -> MoFEMErrorCode
 
template<int V, typename std::enable_if<(V > = 0>
void set_ref_ent_basic_data_ptr_impl (boost::shared_ptr< BasicEntityData > &ptr)
 
template<int V>
void set_ref_ent_basic_data_ptr_impl (boost::shared_ptr< BasicEntityData > &ptr)
 
std::ostream & operator<< (std::ostream &strm, const LogManager::SeverityLevel &level)
 
static med_geometrie_element moab2med_element_type (const EntityType type)
 
std::ostream & operator<< (std::ostream &os, const MedInterface::FieldData &field_data)
 
static auto min_non_abs (const double a, const double b)
 
std::ostream & operator<< (std::ostream &os, const FENumeredDofEntity &e)
 
std::ostream & operator<< (std::ostream &os, const DisplacementCubitBcData &e)
 
std::ostream & operator<< (std::ostream &os, const ForceCubitBcData &e)
 
std::ostream & operator<< (std::ostream &os, const VelocityCubitBcData &e)
 
std::ostream & operator<< (std::ostream &os, const AccelerationCubitBcData &e)
 
std::ostream & operator<< (std::ostream &os, const TemperatureCubitBcData &e)
 
std::ostream & operator<< (std::ostream &os, const PressureCubitBcData &e)
 
std::ostream & operator<< (std::ostream &os, const HeatFluxCubitBcData &e)
 
std::ostream & operator<< (std::ostream &os, const CfgCubitBcData &e)
 
std::ostream & operator<< (std::ostream &os, const CubitMeshSets &e)
 
std::ostream & operator<< (std::ostream &os, const DofEntity &e)
 
std::ostream & operator<< (std::ostream &os, const NumeredDofEntity &e)
 
std::ostream & operator<< (std::ostream &os, const FEDofEntity &e)
 
std::ostream & operator<< (std::ostream &os, const FiniteElement &e)
 
std::ostream & operator<< (std::ostream &os, const EntFiniteElement &e)
 
std::ostream & operator<< (std::ostream &os, const NumeredEntFiniteElement &e)
 
template<typename ENTSVIEW , typename DOFSVIEW , typename EXTRACTOR , typename INSERTER >
static MoFEMErrorCode get_cache_data_dofs_view (ENTSVIEW &ents_view, DOFSVIEW &dofs_view, EXTRACTOR &&extractor, INSERTER &&inserter)
 
std::ostream & operator<< (std::ostream &os, const FieldEntity &e)
 
std::ostream & operator<< (std::ostream &os, const Field &e)
 
std::ostream & operator<< (std::ostream &os, const FieldEntityEntFiniteElementAdjacencyMap &e)
 
std::ostream & operator<< (std::ostream &os, const BlockSetAttributes &e)
 
std::ostream & operator<< (std::ostream &os, const Mat_Elastic &e)
 
std::ostream & operator<< (std::ostream &os, const Mat_Elastic_EberleinHolzapfel1 &e)
 
std::ostream & operator<< (std::ostream &os, const Mat_Thermal &e)
 
std::ostream & operator<< (std::ostream &os, const Mat_Moisture &e)
 
std::ostream & operator<< (std::ostream &os, const Block_BodyForces &e)
 
std::ostream & operator<< (std::ostream &os, const Mat_Elastic_TransIso &e)
 
std::ostream & operator<< (std::ostream &os, const Mat_Interf &e)
 
std::ostream & operator<< (std::ostream &os, const Problem &e)
 
std::ostream & operator<< (std::ostream &os, const RefElement &e)
 
std::ostream & operator<< (std::ostream &os, const RefElement_TET &e)
 
std::ostream & operator<< (std::ostream &os, const RefElementFace &e)
 
std::ostream & operator<< (std::ostream &os, const RefElement_EDGE &e)
 
std::ostream & operator<< (std::ostream &os, const RefElement_VERTEX &e)
 
std::ostream & operator<< (std::ostream &os, const RefEntity &e)
 
std::ostream & operator<< (std::ostream &os, const FieldSeries &e)
 
std::ostream & operator<< (std::ostream &os, const FieldSeriesStep &e)
 
template<EntityType TYPE>
EntityHandle get_id_for_max_type ()
 
template<EntityType TYPE>
EntityHandle get_id_for_min_type ()
 
EntityHandle get_id_for_max_type (const EntityType type)
 
EntityHandle get_id_for_min_type (const EntityType type)
 
void * get_tag_ptr (moab::Interface &moab, Tag th, EntityHandle ent, int *tag_size)
 Get the tag ptr object. More...
 
struct __attribute__ ((__packed__)) SideNumber
 keeps information about side number for the finite element More...
 
template<typename T >
PetscObject getPetscObject (T obj)
 
MPI_Comm getCommFromPetscObject (PetscObject obj)
 Get the Comm From Petsc Object object. More...
 
SmartPetscObj< Vec > smartVectorDuplicate (SmartPetscObj< Vec > &vec)
 Create duplicate vector of smart vector. More...
 
SmartPetscObj< Vec > smartVectorDuplicate (Vec &vec)
 
SmartPetscObj< Mat > smartMatDuplicate (Mat &mat, MatDuplicateOption op)
 
SmartPetscObj< Mat > smartMatDuplicate (SmartPetscObj< Mat > &mat, MatDuplicateOption op)
 
PetscErrorCode DMRegister_MoFEM (const char sname[])
 Register MoFEM problem. More...
 
PetscErrorCode DMMoFEMCreateMoFEM (DM dm, MoFEM::Interface *m_field_ptr, const char problem_name[], const MoFEM::BitRefLevel bit_level, const MoFEM::BitRefLevel bit_mask=MoFEM::BitRefLevel().set())
 Must be called by user to set MoFEM data structures. More...
 
PetscErrorCode DMMoFEMDuplicateDMCtx (DM dm, DM dm_duplicate)
 Duplicate internal data struture. More...
 
PetscErrorCode DMMoFEMCreateSubDM (DM subdm, DM dm, const char problem_name[])
 Must be called by user to set Sub DM MoFEM data structures. More...
 
PetscErrorCode DMoFEMGetInterfacePtr (DM dm, MoFEM::Interface **m_field_ptr)
 Get pointer to MoFEM::Interface. More...
 
PetscErrorCode DMMoFEMGetProblemPtr (DM dm, const MoFEM::Problem **problem_ptr)
 Get pointer to problem data structure. More...
 
PetscErrorCode DMMoFEMSetDestroyProblem (DM dm, PetscBool destroy_problem)
 
PetscErrorCode DMMoFEMGetDestroyProblem (DM dm, PetscBool *destroy_problem)
 
PetscErrorCode DMMoFEMSetSquareProblem (DM dm, PetscBool square_problem)
 set squared problemIt if true is assumed that matrix has the same indexing on rows and columns. This reduces interprocessor communication. More...
 
PetscErrorCode DMMoFEMGetSquareProblem (DM dm, PetscBool *square_problem)
 get squared problemIt if true is assumed that matrix has the same indexing on rows and columns. This reduces interprocessor communication. More...
 
PetscErrorCode DMMoFEMResolveSharedFiniteElements (DM dm, const char fe_name[])
 Resolve shared entities. More...
 
DEPRECATED PetscErrorCode DMMoFEMResolveSharedEntities (DM dm, const char fe_name[])
 
PetscErrorCode DMMoFEMGetProblemFiniteElementLayout (DM dm, const char fe_name[], PetscLayout *layout)
 Get finite elements layout in the problem. More...
 
PetscErrorCode DMMoFEMAddElement (DM dm, const char fe_name[])
 add element to dm More...
 
PetscErrorCode DMMoFEMUnSetElement (DM dm, const char fe_name[])
 unset element from dm More...
 
PetscErrorCode DMoFEMMeshToLocalVector (DM dm, Vec l, InsertMode mode, ScatterMode scatter_mode)
 set local (or ghosted) vector values on mesh for partition only More...
 
PetscErrorCode DMoFEMMeshToGlobalVector (DM dm, Vec g, InsertMode mode, ScatterMode scatter_mode)
 set ghosted vector values on all existing mesh entities More...
 
PetscErrorCode DMoFEMPreProcessFiniteElements (DM dm, MoFEM::FEMethod *method)
 execute finite element method for each element in dm (problem) More...
 
PetscErrorCode DMoFEMPostProcessFiniteElements (DM dm, MoFEM::FEMethod *method)
 execute finite element method for each element in dm (problem) More...
 
PetscErrorCode DMoFEMLoopFiniteElementsUpAndLowRank (DM dm, const char fe_name[], MoFEM::FEMethod *method, int low_rank, int up_rank)
 Executes FEMethod for finite elements in DM. More...
 
PetscErrorCode DMoFEMLoopFiniteElementsUpAndLowRank (DM dm, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, int low_rank, int up_rank)
 Executes FEMethod for finite elements in DM. More...
 
PetscErrorCode DMoFEMLoopFiniteElements (DM dm, const char fe_name[], MoFEM::FEMethod *method)
 Executes FEMethod for finite elements in DM. More...
 
PetscErrorCode DMoFEMLoopFiniteElements (DM dm, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method)
 Executes FEMethod for finite elements in DM. More...
 
PetscErrorCode DMoFEMLoopDofs (DM dm, const char field_name[], MoFEM::DofMethod *method)
 execute method for dofs on field in problem More...
 
PetscErrorCode DMMoFEMKSPSetComputeRHS (DM dm, const char fe_name[], MoFEM::FEMethod *method, MoFEM::BasicMethod *pre_only, MoFEM::BasicMethod *post_only)
 Set compute operator for KSP solver via sub-matrix and IS. More...
 
PetscErrorCode DMMoFEMKSPSetComputeRHS (DM dm, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, boost::shared_ptr< MoFEM::BasicMethod > pre_only, boost::shared_ptr< MoFEM::BasicMethod > post_only)
 set KSP right hand side evaluation function More...
 
PetscErrorCode DMMoFEMKSPSetComputeOperators (DM dm, const char fe_name[], MoFEM::FEMethod *method, MoFEM::BasicMethod *pre_only, MoFEM::BasicMethod *post_only)
 Set KSP operators and push mofem finite element methods. More...
 
PetscErrorCode DMMoFEMKSPSetComputeOperators (DM dm, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, boost::shared_ptr< MoFEM::BasicMethod > pre_only, boost::shared_ptr< MoFEM::BasicMethod > post_only)
 Set KSP operators and push mofem finite element methods. More...
 
PetscErrorCode DMMoFEMSNESSetFunction (DM dm, const char fe_name[], MoFEM::FEMethod *method, MoFEM::BasicMethod *pre_only, MoFEM::BasicMethod *post_only)
 set SNES residual evaluation function More...
 
PetscErrorCode DMMoFEMSNESSetFunction (DM dm, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, boost::shared_ptr< MoFEM::BasicMethod > pre_only, boost::shared_ptr< MoFEM::BasicMethod > post_only)
 set SNES residual evaluation function More...
 
PetscErrorCode DMMoFEMSNESSetJacobian (DM dm, const char fe_name[], MoFEM::FEMethod *method, MoFEM::BasicMethod *pre_only, MoFEM::BasicMethod *post_only)
 set SNES Jacobian evaluation function More...
 
PetscErrorCode DMMoFEMSNESSetJacobian (DM dm, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, boost::shared_ptr< MoFEM::BasicMethod > pre_only, boost::shared_ptr< MoFEM::BasicMethod > post_only)
 set SNES Jacobian evaluation function More...
 
PetscErrorCode DMMoFEMTSSetIFunction (DM dm, const char fe_name[], MoFEM::FEMethod *method, MoFEM::BasicMethod *pre_only, MoFEM::BasicMethod *post_only)
 set TS implicit function evaluation function More...
 
PetscErrorCode DMMoFEMTSSetIFunction (DM dm, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, boost::shared_ptr< MoFEM::BasicMethod > pre_only, boost::shared_ptr< MoFEM::BasicMethod > post_only)
 set TS implicit function evaluation function More...
 
PetscErrorCode DMMoFEMTSSetIJacobian (DM dm, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, boost::shared_ptr< MoFEM::BasicMethod > pre_only, boost::shared_ptr< MoFEM::BasicMethod > post_only)
 set TS Jacobian evaluation function More...
 
PetscErrorCode DMMoFEMTSSetIJacobian (DM dm, const char fe_name[], MoFEM::FEMethod *method, MoFEM::BasicMethod *pre_only, MoFEM::BasicMethod *post_only)
 set TS Jacobian evaluation function More...
 
PetscErrorCode DMMoFEMTSSetRHSFunction (DM dm, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, boost::shared_ptr< MoFEM::BasicMethod > pre_only, boost::shared_ptr< MoFEM::BasicMethod > post_only)
 set TS the right hand side function More...
 
PetscErrorCode DMMoFEMTSSetRHSJacobian (DM dm, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, boost::shared_ptr< MoFEM::BasicMethod > pre_only, boost::shared_ptr< MoFEM::BasicMethod > post_only)
 set TS the right hand side jacobian More...
 
PetscErrorCode DMMoFEMTSSetI2Function (DM dm, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, boost::shared_ptr< MoFEM::BasicMethod > pre_only, boost::shared_ptr< MoFEM::BasicMethod > post_only)
 set TS implicit function evaluation function More...
 
PetscErrorCode DMMoFEMTSSetI2Jacobian (DM dm, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, boost::shared_ptr< MoFEM::BasicMethod > pre_only, boost::shared_ptr< MoFEM::BasicMethod > post_only)
 set TS Jacobian evaluation function More...
 
PetscErrorCode DMMoFEMTSSetMonitor (DM dm, TS ts, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, boost::shared_ptr< MoFEM::BasicMethod > pre_only, boost::shared_ptr< MoFEM::BasicMethod > post_only)
 Set Monitor To TS solver. More...
 
PetscErrorCode DMMoFEMTSSetMonitor (DM dm, TS ts, const char fe_name[], MoFEM::FEMethod *method, MoFEM::BasicMethod *pre_only, MoFEM::BasicMethod *post_only)
 Set Monitor To TS solver. More...
 
PetscErrorCode DMMoFEMGetKspCtx (DM dm, MoFEM::KspCtx **ksp_ctx)
 get MoFEM::KspCtx data structure More...
 
PetscErrorCode DMMoFEMGetKspCtx (DM dm, const boost::shared_ptr< MoFEM::KspCtx > &ksp_ctx)
 get MoFEM::KspCtx data structure More...
 
PetscErrorCode DMMoFEMSetKspCtx (DM dm, boost::shared_ptr< MoFEM::KspCtx > &ksp_ctx)
 set MoFEM::KspCtx data structure More...
 
PetscErrorCode DMMoFEMGetSnesCtx (DM dm, MoFEM::SnesCtx **snes_ctx)
 get MoFEM::SnesCtx data structure More...
 
PetscErrorCode DMMoFEMGetSnesCtx (DM dm, const boost::shared_ptr< MoFEM::SnesCtx > &snes_ctx)
 get MoFEM::SnesCtx data structure More...
 
PetscErrorCode DMMoFEMSetSnesCtx (DM dm, boost::shared_ptr< MoFEM::SnesCtx > &snes_ctx)
 Set MoFEM::SnesCtx data structure. More...
 
PetscErrorCode DMMoFEMGetTsCtx (DM dm, MoFEM::TsCtx **ts_ctx)
 get MoFEM::TsCtx data structure More...
 
PetscErrorCode DMMoFEMGetTsCtx (DM dm, const boost::shared_ptr< MoFEM::TsCtx > &ts_ctx)
 get MoFEM::TsCtx data structure More...
 
PetscErrorCode DMMoFEMSetTsCtx (DM dm, boost::shared_ptr< MoFEM::TsCtx > &ts_ctx)
 Set MoFEM::TsCtx data structureIt take over pointer, do not delete it, DM will destroy pointer when is destroyed. More...
 
PetscErrorCode DMMoFEMSetIsPartitioned (DM dm, PetscBool is_partitioned)
 
PetscErrorCode DMMoFEMGetIsPartitioned (DM dm, PetscBool *is_partitioned)
 
PetscErrorCode DMSetOperators_MoFEM (DM dm)
 Set operators for MoFEM dm. More...
 
PetscErrorCode DMCreate_MoFEM (DM dm)
 Create dm data structure with MoFEM data structure. More...
 
PetscErrorCode DMDestroy_MoFEM (DM dm)
 Destroys dm with MoFEM data structure. More...
 
PetscErrorCode DMCreateGlobalVector_MoFEM (DM dm, Vec *g)
 DMShellSetCreateGlobalVectorsets the routine to create a global vector associated with the shell DM. More...
 
PetscErrorCode DMCreateGlobalVector_MoFEM (DM dm, SmartPetscObj< Vec > &g_ptr)
 DMShellSetCreateGlobalVectorsets the routine to create a global vector associated with the shell DM. More...
 
PetscErrorCode DMCreateLocalVector_MoFEM (DM dm, Vec *l)
 DMShellSetCreateLocalVectorsets the routine to create a local vector associated with the shell DM. More...
 
PetscErrorCode DMCreateMatrix_MoFEM (DM dm, Mat *M)
 
PetscErrorCode DMCreateMatrix_MoFEM (DM dm, SmartPetscObj< Mat > &M)
 
PetscErrorCode DMSetFromOptions_MoFEM (DM dm)
 
PetscErrorCode DMSetUp_MoFEM (DM dm)
 
PetscErrorCode DMSubDMSetUp_MoFEM (DM subdm)
 
PetscErrorCode DMMoFEMAddSubFieldRow (DM dm, const char field_name[], EntityType lo_type=MBVERTEX, EntityType hi_type=MBMAXTYPE)
 
PetscErrorCode DMMoFEMAddSubFieldCol (DM dm, const char field_name[], EntityType lo_type=MBVERTEX, EntityType hi_type=MBMAXTYPE)
 
PetscErrorCode DMMoFEMGetIsSubDM (DM dm, PetscBool *is_sub_dm)
 
PetscErrorCode DMMoFEMGetSubRowIS (DM dm, IS *is)
 get sub problem is More...
 
PetscErrorCode DMMoFEMGetSubColIS (DM dm, IS *is)
 get sub problem is More...
 
PetscErrorCode DMMoFEMAddRowCompositeProblem (DM dm, const char prb_name[])
 Add problem to composite DM on rowThis create block on row with DOFs from problem of given name. More...
 
PetscErrorCode DMMoFEMAddColCompositeProblem (DM dm, const char prb_name[])
 Add problem to composite DM on colThis create block on col with DOFs from problem of given name. More...
 
PetscErrorCode DMMoFEMGetIsCompDM (DM dm, PetscBool *is_comp_dm)
 Get if this DM is composite DM. More...
 
PetscErrorCode DMGlobalToLocalBegin_MoFEM (DM dm, Vec, InsertMode, Vec)
 
PetscErrorCode DMGlobalToLocalEnd_MoFEM (DM dm, Vec, InsertMode, Vec)
 
PetscErrorCode DMLocalToGlobalBegin_MoFEM (DM, Vec, InsertMode, Vec)
 
PetscErrorCode DMLocalToGlobalEnd_MoFEM (DM, Vec, InsertMode, Vec)
 
PetscErrorCode DMCreateFieldIS_MoFEM (DM dm, PetscInt *numFields, char ***fieldNames, IS **fields)
 
PetscErrorCode DMMoFEMGetFieldIS (DM dm, RowColData rc, const char field_name[], IS *is)
 get field is in the problem More...
 
PetscErrorCode DMMoFEMSetVerbosity (DM dm, const int verb)
 Set verbosity level. More...
 
DEPRECATED auto smartCreateDMDVector (DM dm)
 
template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode DMMoFEMKSPSetComputeRHS (DM dm, S fe_name, T0 method, T1 pre_only, T2 post_only)
 
template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode DMMoFEMKSPSetComputeOperators (DM dm, S fe_name, T0 method, T1 pre_only, T2 post_only)
 
template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode DMMoFEMSNESSetFunction (DM dm, S fe_name, T0 method, T1 pre_only, T2 post_only)
 
template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode DMMoFEMSNESSetJacobian (DM dm, S fe_name, T0 method, T1 pre_only, T2 post_only)
 
template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode DMMoFEMTSSetIFunction (DM dm, S fe_name, T0 method, T1 pre_only, T2 post_only)
 
template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode DMMoFEMTSSetIJacobian (DM dm, S fe_name, T0 method, T1 pre_only, T2 post_only)
 
template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode DMMoFEMTSSetRHSFunction (DM dm, S fe_name, T0 method, T1 pre_only, T2 post_only)
 
template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode DMMoFEMTSSetRHSJacobian (DM dm, S fe_name, T0 method, T1 pre_only, T2 post_only)
 
template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode DMMoFEMTSSetMonitor (DM dm, TS ts, S fe_name, T0 method, T1 pre_only, T2 post_only)
 
PetscErrorCode KspRhs (KSP ksp, Vec f, void *ctx)
 Run over elements in the lists. More...
 
PetscErrorCode KspMat (KSP ksp, Mat A, Mat B, void *ctx)
 Run over elenents in the list. More...
 
PetscErrorCode SnesRhs (SNES snes, Vec x, Vec f, void *ctx)
 This is MoFEM implementation for the right hand side (residual vector) evaluation in SNES solver. More...
 
PetscErrorCode SnesMat (SNES snes, Vec x, Mat A, Mat B, void *ctx)
 This is MoFEM implementation for the left hand side (tangent matrix) evaluation in SNES solver. More...
 
MoFEMErrorCode SnesMoFEMSetAssemblyType (SNES snes, MatAssemblyType type)
 Set assembly type at the end of SnesMat. More...
 
MoFEMErrorCode SnesMoFEMSetBehavior (SNES snes, MoFEMTypes bh)
 Set behavior if finite element in sequence does not exist. More...
 
PetscErrorCode TsSetIFunction (TS ts, PetscReal t, Vec u, Vec u_t, Vec F, void *ctx)
 Set IFunction for TS solver. More...
 
PetscErrorCode TsSetIJacobian (TS ts, PetscReal t, Vec u, Vec u_t, PetscReal a, Mat A, Mat B, void *ctx)
 Set function evaluating jacobina in TS solver. More...
 
PetscErrorCode TsMonitorSet (TS ts, PetscInt step, PetscReal t, Vec u, void *ctx)
 Set monitor for TS solver. More...
 
PetscErrorCode TsSetRHSFunction (TS ts, PetscReal t, Vec u, Vec F, void *ctx)
 TS solver function. More...
 
PetscErrorCode TsSetRHSJacobian (TS ts, PetscReal t, Vec u, Mat A, Mat B, void *ctx)
 TS solver function. More...
 
PetscErrorCode TsSetI2Jacobian (TS ts, PetscReal t, Vec u, Vec u_t, Vec u_tt, PetscReal v, PetscReal a, Mat J, Mat P, void *ctx)
 Calculation Jaconian for second order PDE in time. More...
 
PetscErrorCode TsSetI2Function (TS ts, PetscReal t, Vec u, Vec u_t, Vec u_tt, Vec F, void *ctx)
 Calculation the right hand side for second order PDE in time. More...
 
DEPRECATED PetscErrorCode f_TSSetIFunction (TS ts, PetscReal t, Vec u, Vec u_t, Vec F, void *ctx)
 \deprecate Do not use, change to TsSetIFunction More...
 
DEPRECATED PetscErrorCode f_TSSetIJacobian (TS ts, PetscReal t, Vec u, Vec u_t, PetscReal a, Mat A, Mat B, void *ctx)
 
DEPRECATED PetscErrorCode f_TSMonitorSet (TS ts, PetscInt step, PetscReal t, Vec u, void *ctx)
 

Variables

DEPRECATED typedef FlatPrismElementForcesAndSourcesCore FlatPrismElementForcesAndSurcesCore
 USe FlatPrismElementForcesAndSourcesCore. More...
 
DEPRECATED typedef ForcesAndSourcesCore ForcesAndSurcesCore
 
DEPRECATED typedef DofMethod EntMethod
 
DEPRECATED typedef Problem MoFEMProblem
 
const EntityHandle no_handle = 0
 No entity handle is indicated by zero handle, i.e. root meshset. More...
 
static const MOFEMuuid IDD_UNKNOWN_BASE_FUNCTION
 
static const MOFEMuuid IDD_TET_BASE_FUNCTION
 
static const MOFEMuuid IDD_TRI_BASE_FUNCTION
 
static const MOFEMuuid IDD_EDGE_BASE_FUNCTION
 
static const MOFEMuuid IDD_QUAD_BASE_FUNCTION
 
static const MOFEMuuid IDD_FATPRISM_BASE_FUNCTION
 
static const MOFEMuuid IDD_FLATPRISM_BASE_FUNCTION
 
static const int edges_conn [] = {0, 1, 1, 2, 2, 0, 0, 3, 1, 3, 2, 3}
 
static const int oposite_edge [] = {5, 3, 4, 1, 2, 0}
 
static const int edge_permutations [6][6]
 
static const int edge_mirror_cross [6] = {0, 3, 4, 1, 2, 5}
 
static const int edge_mirror_vertical [6] = {0, 4, 3, 2, 1, 5}
 
static const int cyclic_node_rotate_face_3 [3][4]
 
static const int cyclic_edge_rotate_face_3 [3][6]
 
static const char edge_bits_mark [] = {1, 2, 4, 8, 16, 32}
 
static const MOFEMuuid IDD_JACOBI_BASE_FUNCTION
 
static const MOFEMuuid IDD_INTEGRATED_JACOBI_BASE_FUNCTION
 
static const MOFEMuuid IDD_LEGENDRE_BASE_FUNCTION
 
static const MOFEMuuid IDD_LOBATTO_BASE_FUNCTION
 
static const MOFEMuuid IDD_KERNEL_BASE_FUNCTION
 
static const MOFEMuuid IDD_MOFEMBitLevelCoupler = MOFEMuuid( BitIntefaceId(BITLEVELCOUPLER_INTERFACE) )
 
static const MOFEMuuid IDD_MOFEMBitRefManager
 
static const MOFEMuuid IDD_MOFEMComm = MOFEMuuid(BitIntefaceId(COMM_INTERFACE))
 
static const MOFEMuuid IDD_MOFEMCoordsSystemsManager
 
static const MOFEMuuid IDD_MOFEMCutMesh
 
static const MOFEMuuid IDD_MOFEMFieldBlas
 
static const MOFEMuuid IDD_MOFEMFieldEvaluator
 
static char dummy_file
 
static const MOFEMuuid IDD_MOFEMCoreInterface
 
static const MOFEMuuid IDD_MOFEMDeprecatedCoreInterface
 
static const MOFEMuuid IDD_MOFEMISManager
 
static const MOFEMuuid IDD_MOFEMLogManager
 
static const MOFEMuuid IDD_MOFEMPetscDataMethod
 
static const MOFEMuuid IDD_MOFEMKspMethod
 
static const MOFEMuuid IDD_MOFEMSnesMethod
 
static const MOFEMuuid IDD_MOFEMTsMethod = MOFEMuuid(BitIntefaceId(TS_METHOD))
 
static const MOFEMuuid IDD_MOFEMBasicMethod
 
static const MOFEMuuid IDD_MOFEMFEMethod = MOFEMuuid(BitIntefaceId(FE_METHOD))
 
static const MOFEMuuid IDD_MOFEMEntityMethod
 
static const MOFEMuuid IDD_MOFEMDofMethod
 
static const MOFEMuuid IDD_MOFEMMatrixManager
 
static const MOFEMuuid IDD_MOFEMMedInterface
 
static const MOFEMuuid IDD_MOFEMMeshRefine
 
static const MOFEMuuid IDD_MOFEMMeshsetsManager
 
static const MOFEMuuid IDD_MOFEMNodeMerger
 
static const MOFEMuuid IDD_MOFEMBasic
 
static const MOFEMuuid IDD_MOFEMPrismInterface
 
static const MOFEMuuid IDD_MOFEMPrismsFromSurface
 
static const MOFEMuuid IDD_MOFEMProblemsManager
 
static const MOFEMuuid IDD_MOFEMSeriesRecorder
 
static const MOFEMuuid IDD_MOFEMSimple
 
static const MOFEMuuid IDD_MOFEMTetGegInterface
 
static const MOFEMuuid IDD_MOFEMTools = MOFEMuuid(BitIntefaceId(TOOLS))
 
static const MOFEMuuid IDD_MOFEMUnknown
 
static const MOFEMuuid IDD_MOFEMVEC
 
auto createSmartDM
 Creates smart DM object. More...
 
auto createSmartGhostVector
 Create smart ghost vector. More...
 
auto createSmartVectorMPI
 Create MPI Vector. More...
 
auto createTS
 
auto createSNES
 
auto createKSP
 
auto createPC
 
static const MOFEMuuid IDD_DMCTX = MOFEMuuid(BitIntefaceId(DMCTX_INTERFACE))
 
auto smartCreateDMMatrix
 Get smart matrix from DM. More...
 
auto smartCreateDMVector
 Get smart vector from DM. More...
 

Detailed Description

implementation of Data Operators for Forces and Sources

name space of MoFEM library functions and classes

MoFEM is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

MoFEM is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.

You should have received a copy of the GNU Lesser General Public License along with MoFEM. If not, see http://www.gnu.org/licenses/

file DataOperators.cpp

The MoFEM package is copyrighted by Lukasz Kaczmarczyk. It can be freely used for educational and research purposes by other institutions. If you use this softwre pleas cite my work.

MoFEM is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

MoFEM is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.

You should have received a copy of the GNU Lesser General Public License along with MoFEM. If not, see http://www.gnu.org/licenses/

Typedef Documentation

◆ BasicMethodsSequence

Definition at line 112 of file AuxPETSc.hpp.

◆ CacheTuple

using MoFEM::CacheTuple = typedef std::tuple< std::vector<EntityCacheDofs>, std::vector<EntityCacheNumeredDofs>, std::vector<EntityCacheNumeredDofs> >

Definition at line 502 of file FEMultiIndices.hpp.

◆ CacheTupleSharedPtr

using MoFEM::CacheTupleSharedPtr = typedef boost::shared_ptr<CacheTuple>

Definition at line 505 of file FEMultiIndices.hpp.

◆ CacheTupleWeakPtr

using MoFEM::CacheTupleWeakPtr = typedef boost::weak_ptr<CacheTuple>

Definition at line 504 of file FEMultiIndices.hpp.

◆ CoordSys_multiIndex

typedef multi_index_container< boost::shared_ptr<CoordSys>, indexed_by< ordered_unique<tag<Meshset_mi_tag>, member<CoordSys, EntityHandle, &CoordSys::meshSet> >, ordered_unique< tag<CoordSysName_mi_tag>, const_mem_fun<CoordSys, boost::string_ref, &CoordSys::getNameRef> > > > MoFEM::CoordSys_multiIndex

Definition at line 139 of file CoordSysMultiIndices.hpp.

◆ Core

using MoFEM::Core = typedef CoreTmp<0>
Examples
add_blockset.cpp, add_cubit_meshsets.cpp, analytical_nonlinear_poisson.cpp, analytical_poisson.cpp, analytical_poisson_field_split.cpp, bernstein_bezier_generate_base.cpp, bone_adaptation.cpp, boundary_marker.cpp, build_large_problem.cpp, build_problems.cpp, cell_forces.cpp, continuity_check_on_contact_prism_side_ele.cpp, continuity_check_on_skeleton_3d.cpp, continuity_check_on_skeleton_with_simple_2d.cpp, cubit_bc_test.cpp, delete_ho_nodes.cpp, dm_build_partitioned_mesh.cpp, dm_create_subdm.cpp, dm_partitioned_no_field.cpp, edge_and_bubble_shape_functions_on_quad.cpp, elasticity.cpp, elasticity_mixed_formulation.cpp, ep.cpp, field_axpy_atom_test.cpp, field_blas_set_vertex_dofs.cpp, field_evaluator.cpp, field_to_vertices.cpp, forces_and_sources_testing_edge_element.cpp, forces_and_sources_testing_flat_prism_element.cpp, forces_and_sources_testing_users_base.cpp, gauss_points_on_quad.cpp, hcurl_check_approx_in_2d.cpp, hcurl_curl_operator.cpp, hcurl_divergence_operator_2d.cpp, hdiv_divergence_operator.cpp, heat_equation.cpp, hello_world.cpp, helmholtz.cpp, lesson3_poisson.cpp, lesson6_radiation.cpp, lesson7_plastic.cpp, lesson8_contact.cpp, log.cpp, loop_entities.cpp, lorentz_force.cpp, magnetostatic.cpp, mesh_cut.cpp, mesh_insert_interface_atom.cpp, mesh_smoothing.cpp, meshset_to_vtk.cpp, minimal_surface_area.cpp, prism_elements_from_surface.cpp, prism_polynomial_approximation.cpp, quad_polynomial_approximation.cpp, reaction_diffusion.cpp, remove_entities_from_problem.cpp, scalar_check_approximation_2d.cpp, simple_contact.cpp, simple_elasticity.cpp, simple_interface.cpp, split_sideset.cpp, test_cache_on_entities.cpp, test_jacobian_of_simple_contact_element.cpp, testing_jacobian_of_hook_element.cpp, testing_jacobian_of_hook_scaled_with_density_element.cpp, unsaturated_transport.cpp, and wave_equation.cpp.

Definition at line 1129 of file Core.hpp.

◆ CubitMeshSet_multiIndex

Stores data about meshsets (see CubitMeshSets) storing data about boundary conditions, interfaces, sidesets, nodests, blocksets.

Parameters
Meshset_mi_tagindex by meshset handle
CubitMeshSets_mi_tagindex by bc type, see CubitBC
CubitMeshSets_mask_meshset_mi_tagindex by NODESET, SIDESET, BLOCKSET only
CubitMeshSets_nameindex by meshset name
Composite_Cubit_msId_And_MeshSetType_mi_tagindex by meshset id and type NODESET, SIDESET or BLOCKSET

Example:

MeshsetsManager *m_mng;
CHKERR m_field.getInterface(m_mng);
auto &index = m_mng->getMeshsetsMultindex();
auto mit =
index.get<CubitMeshSets_mask_meshset_mi_tag>().lower_bound(BLOCKSET); auto
hi_mit =
index.get<CubitMeshSets_mask_meshset_mi_tag>().upper_bound(BLOCKSET);
// Make a loop over all BLOCKSET
for(;mit!=hi_mit;mit++) {
int id = mit->getMeshsetId(); // get blockset id
EntityHandle handle = mit->getMeshset(); // get block meshset
std::vector< double > attributes;
// get block attributes
auto mit->getAttributes(attributes);
// do something
}

Definition at line 398 of file BCMultiIndices.hpp.

◆ CubitMeshsetById

typedef CubitMeshSet_multiIndex::index<CubitMeshSets_mi_tag>::type MoFEM::CubitMeshsetById

Definition at line 44 of file MeshsetsManager.hpp.

◆ CubitMeshsetByMask

typedef CubitMeshSet_multiIndex::index<CubitMeshSets_mask_meshset_mi_tag>::type MoFEM::CubitMeshsetByMask

Definition at line 38 of file MeshsetsManager.hpp.

◆ CubitMeshsetByName

typedef CubitMeshSet_multiIndex::index<CubitMeshSets_name>::type MoFEM::CubitMeshsetByName

Definition at line 41 of file MeshsetsManager.hpp.

◆ CubitMeshsetByType

typedef CubitMeshSet_multiIndex::index<CubitMeshSets_mi_tag>::type MoFEM::CubitMeshsetByType

Definition at line 35 of file MeshsetsManager.hpp.

◆ DofEntityByUId

using MoFEM::DofEntityByUId = typedef DofEntity_multiIndex::index<Unique_mi_tag>::type

Definition at line 333 of file DofsMultiIndices.hpp.

◆ DofsAllocator

using MoFEM::DofsAllocator = typedef ublas::unbounded_array< FEDofEntity *, std::allocator<FEDofEntity *> >

Definition at line 33 of file DataStructures.hpp.

◆ FEMethodsSequence

Definition at line 111 of file AuxPETSc.hpp.

◆ Field_multiIndex_view

typedef multi_index_container< boost::shared_ptr<Field>, indexed_by< ordered_unique<tag<BitFieldId_mi_tag>, const_mem_fun<Field, const BitFieldId &, &Field::getId>, LtBit<BitFieldId> > > > MoFEM::Field_multiIndex_view

Definition at line 637 of file FieldMultiIndices.hpp.

◆ FieldEntAllocator

using MoFEM::FieldEntAllocator = typedef ublas::unbounded_array< FieldEntity *, std::allocator<FieldEntity *> >

Definition at line 41 of file DataStructures.hpp.

◆ FieldEntity_multiIndex_ent_view

typedef multi_index_container< boost::shared_ptr<FieldEntity>, indexed_by< sequenced<>, ordered_non_unique<tag<Ent_mi_tag>, const_mem_fun<FieldEntity::interface_type_RefEntity, EntityHandle, &FieldEntity::getEnt> > > > MoFEM::FieldEntity_multiIndex_ent_view

Definition at line 426 of file FieldEntsMultiIndices.hpp.

◆ FieldEntity_multiIndex_spaceType_view

typedef multi_index_container< boost::shared_ptr<FieldEntity>, indexed_by< sequenced<>, ordered_non_unique< tag<Composite_EntType_and_Space_mi_tag>, composite_key<FieldEntity, const_mem_fun<FieldEntity::interface_type_RefEntity, EntityType, &FieldEntity::getEntType>, const_mem_fun<FieldEntity::interface_type_Field, FieldSpace, &FieldEntity::getSpace> > > > > MoFEM::FieldEntity_multiIndex_spaceType_view

Definition at line 447 of file FieldEntsMultiIndices.hpp.

◆ FieldEntity_vector_view

typedef std::vector<boost::weak_ptr<FieldEntity> > MoFEM::FieldEntity_vector_view

Definition at line 449 of file FieldEntsMultiIndices.hpp.

◆ Interface

Examples
add_blockset.cpp, add_cubit_meshsets.cpp, analytical_nonlinear_poisson.cpp, analytical_poisson.cpp, analytical_poisson_field_split.cpp, bernstein_bezier_generate_base.cpp, bone_adaptation.cpp, boundary_marker.cpp, build_large_problem.cpp, build_problems.cpp, cell_forces.cpp, continuity_check_on_contact_prism_side_ele.cpp, continuity_check_on_skeleton_3d.cpp, continuity_check_on_skeleton_with_simple_2d.cpp, cubit_bc_test.cpp, delete_ho_nodes.cpp, dm_build_partitioned_mesh.cpp, dm_create_subdm.cpp, dm_partitioned_no_field.cpp, edge_and_bubble_shape_functions_on_quad.cpp, elasticity.cpp, elasticity_mixed_formulation.cpp, ElasticityMixedFormulation.hpp, ep.cpp, field_axpy_atom_test.cpp, field_blas_set_vertex_dofs.cpp, field_evaluator.cpp, field_to_vertices.cpp, forces_and_sources_testing_edge_element.cpp, forces_and_sources_testing_flat_prism_element.cpp, forces_and_sources_testing_users_base.cpp, gauss_points_on_quad.cpp, hcurl_check_approx_in_2d.cpp, hcurl_curl_operator.cpp, hcurl_divergence_operator_2d.cpp, hdiv_divergence_operator.cpp, heat_equation.cpp, hello_world.cpp, helmholtz.cpp, HookeElement.hpp, lesson3_poisson.cpp, lesson6_radiation.cpp, lesson7_plastic.cpp, lesson8_contact.cpp, log.cpp, loop_entities.cpp, lorentz_force.cpp, MagneticElement.hpp, magnetostatic.cpp, mesh_cut.cpp, mesh_insert_interface_atom.cpp, mesh_smoothing.cpp, meshset_to_vtk.cpp, minimal_surface_area.cpp, prism_elements_from_surface.cpp, prism_polynomial_approximation.cpp, quad_polynomial_approximation.cpp, reaction_diffusion.cpp, Remodeling.cpp, Remodeling.hpp, remove_entities_from_problem.cpp, scalar_check_approximation_2d.cpp, simple_contact.cpp, simple_elasticity.cpp, simple_interface.cpp, split_sideset.cpp, test_cache_on_entities.cpp, test_jacobian_of_simple_contact_element.cpp, testing_jacobian_of_hook_element.cpp, testing_jacobian_of_hook_scaled_with_density_element.cpp, unsaturated_transport.cpp, UnsaturatedFlow.hpp, and wave_equation.cpp.

Definition at line 1943 of file Interface.hpp.

◆ NumeredDofEntity_multiIndex_coeff_idx_ordered_non_unique

using MoFEM::NumeredDofEntity_multiIndex_coeff_idx_ordered_non_unique = typedef multi_index_container< boost::shared_ptr<NumeredDofEntity>, indexed_by<ordered_non_unique<const_mem_fun< NumeredDofEntity::interface_type_DofEntity, FieldCoefficientsNumber, &NumeredDofEntity::getDofCoeffIdx> >> >

Definition at line 535 of file DofsMultiIndices.hpp.

◆ NumeredDofEntity_multiIndex_idx_view_hashed

using MoFEM::NumeredDofEntity_multiIndex_idx_view_hashed = typedef multi_index_container< boost::shared_ptr<NumeredDofEntity>, indexed_by<hashed_unique<const_mem_fun<NumeredDofEntity, DofIdx, &NumeredDofEntity::getDofIdx> >> >

Definition at line 522 of file DofsMultiIndices.hpp.

◆ NumeredDofEntity_multiIndex_petsc_local_dof_view_ordered_non_unique

using MoFEM::NumeredDofEntity_multiIndex_petsc_local_dof_view_ordered_non_unique = typedef multi_index_container<boost::shared_ptr<NumeredDofEntity>, indexed_by<ordered_non_unique<const_mem_fun< NumeredDofEntity, DofIdx, &NumeredDofEntity::getPetscLocalDofIdx> >> >

Definition at line 528 of file DofsMultiIndices.hpp.

◆ NumeredDofEntity_multiIndex_uid_view_ordered

using MoFEM::NumeredDofEntity_multiIndex_uid_view_ordered = typedef multi_index_container<boost::shared_ptr<NumeredDofEntity>, indexed_by< ordered_unique<const_mem_fun< NumeredDofEntity::interface_type_DofEntity, UId, &NumeredDofEntity::getLocalUniqueId > > > >

Definition at line 517 of file DofsMultiIndices.hpp.

◆ OpCalculateScalarValuesDot

\depreacted Name inconstent with other operators

Definition at line 210 of file UserDataOperators.hpp.

◆ RefElement_multiIndex_parents_view

typedef multi_index_container< boost::shared_ptr<RefElement>, indexed_by< ordered_unique<tag<Ent_mi_tag>, const_mem_fun<RefElement::interface_type_RefEntity, EntityHandle, &RefElement::getEnt> >, ordered_non_unique< tag<Ent_Ent_mi_tag>, const_mem_fun<RefElement::interface_type_RefEntity, EntityHandle, &RefElement::getParentEnt> >, ordered_non_unique< tag<Composite_ParentEnt_And_BitsOfRefinedEdges_mi_tag>, composite_key< RefElement, const_mem_fun<RefElement::interface_type_RefEntity, EntityHandle, &RefElement::getParentEnt>, const_mem_fun<RefElement, int, &RefElement::getBitRefEdgesUlong> > > > > MoFEM::RefElement_multiIndex_parents_view

Definition at line 215 of file RefElementMultiIndices.hpp.

◆ RefEntity

using MoFEM::RefEntity = typedef RefEntityTmp<0>

Definition at line 569 of file RefEntsMultiIndices.hpp.

◆ RefEntity_multiIndex_view_by_ordered_parent_entity

using MoFEM::RefEntity_multiIndex_view_by_ordered_parent_entity = typedef multi_index_container< boost::shared_ptr<RefEntity>, indexed_by<ordered_non_unique<const_mem_fun<RefEntity, EntityHandle, &RefEntity::getParentEnt> >, hashed_unique< tag<Composite_EntType_and_ParentEntType_mi_tag>, composite_key<boost::shared_ptr<RefEntity>, const_mem_fun<RefEntity, EntityHandle, &RefEntity::getEnt>, const_mem_fun<RefEntity, EntityHandle, &RefEntity::getParentEnt> >> > >

Definition at line 794 of file RefEntsMultiIndices.hpp.

◆ RefEntity_multiIndex_view_sequence_ordered_view

using MoFEM::RefEntity_multiIndex_view_sequence_ordered_view = typedef multi_index_container< boost::shared_ptr<RefEntity>, indexed_by< sequenced<>, ordered_unique<tag<Ent_mi_tag>, const_mem_fun<RefEntity, EntityHandle, &RefEntity::getEnt> >> >

Definition at line 801 of file RefEntsMultiIndices.hpp.

◆ Sev

Definition at line 29 of file CoreTemplates.hpp.

◆ ShardVec

template<typename T >
using MoFEM::ShardVec = typedef boost::shared_ptr<std::vector<T> >

Definition at line 23 of file Templates.hpp.

◆ VectorDofs

using MoFEM::VectorDofs = typedef ublas::vector<FEDofEntity *, DofsAllocator>

Definition at line 35 of file DataStructures.hpp.

◆ VectorFieldEntities

using MoFEM::VectorFieldEntities = typedef ublas::vector<FieldEntity *, FieldEntAllocator>

Definition at line 43 of file DataStructures.hpp.

◆ VolumeElementForcesAndSourcesCoreOnContactPrismSide

Volume element used to integrate on contact element (could be extended for other volume elements) mofem_forces_and_sources_volume_element.

Definition at line 164 of file VolumeElementForcesAndSourcesCoreOnContactPrismSide.hpp.

Enumeration Type Documentation

◆ AssemblyType

[Storage and set boundary conditions]

Enumerator
PETSC 

Definition at line 100 of file FormsIntegrators.hpp.

◆ IntegrationType

Enumerator
GAUSS 

Definition at line 101 of file FormsIntegrators.hpp.

Function Documentation

◆ cmp_uid_hi()

static auto MoFEM::cmp_uid_hi ( const UId b,
const boost::weak_ptr< FieldEntity > &  a 
)
static

Definition at line 43 of file ForcesAndSourcesCore.cpp.

43  {
44  if (auto a_ptr = a.lock()) {
45  if (b < a_ptr->getLocalUniqueId())
46  return true;
47  else
48  return false;
49  } else {
50  return true;
51  }
52 }

◆ cmp_uid_lo()

static auto MoFEM::cmp_uid_lo ( const boost::weak_ptr< FieldEntity > &  a,
const UId b 
)
static

Definition at line 32 of file ForcesAndSourcesCore.cpp.

32  {
33  if (auto a_ptr = a.lock()) {
34  if (a_ptr->getLocalUniqueId() < b)
35  return true;
36  else
37  return false;
38  } else {
39  return false;
40  }
41 }

◆ constructor_data()

static void MoFEM::constructor_data ( DataForcesAndSourcesCore data,
const EntityType  type 
)
static

Definition at line 57 of file DataStructures.cpp.

58  {
59 
61 
62  data->dataOnEntities[MBENTITYSET].push_back(new EntData());
63 
64  switch (type) {
65  case MBENTITYSET:
66  break;
67  case MBTET:
68  data->dataOnEntities[MBVERTEX].push_back(new EntData());
69  for (int ee = 0; ee != 6; ++ee) {
70  data->dataOnEntities[MBEDGE].push_back(new EntData());
71  }
72  for (int ff = 0; ff != 4; ++ff) {
73  data->dataOnEntities[MBTRI].push_back(new EntData());
74  }
75  data->dataOnEntities[MBTET].push_back(new EntData());
76  break;
77  case MBTRI:
78  data->dataOnEntities[MBVERTEX].push_back(new EntData());
79  for (int ee = 0; ee != 3; ++ee) {
80  data->dataOnEntities[MBEDGE].push_back(new EntData());
81  }
82  data->dataOnEntities[MBTRI].push_back(new EntData());
83  break;
84  case MBQUAD:
85  data->dataOnEntities[MBVERTEX].push_back(new EntData());
86  for (int ee = 0; ee != 4; ++ee) {
87  data->dataOnEntities[MBEDGE].push_back(new EntData());
88  }
89  data->dataOnEntities[MBQUAD].push_back(new EntData());
90  break;
91  case MBEDGE:
92  data->dataOnEntities[MBVERTEX].push_back(new EntData());
93  data->dataOnEntities[MBEDGE].push_back(new EntData());
94  break;
95  case MBVERTEX:
96  data->dataOnEntities[MBVERTEX].push_back(new EntData());
97  break;
98  case MBPRISM:
99  data->dataOnEntities[MBVERTEX].push_back(new EntData());
100  for (int ee = 0; ee != 9; ++ee) {
101  data->dataOnEntities[MBEDGE].push_back(new EntData());
102  }
103  for (int qq = 0; qq != 5; ++qq) {
104  data->dataOnEntities[MBQUAD].push_back(new EntData());
105  }
106  for (int ff = 0; ff != 5; ++ff) {
107  data->dataOnEntities[MBTRI].push_back(new EntData());
108  }
109  data->dataOnEntities[MBPRISM].push_back(new EntData());
110  break;
111  default:
113  }
114 }
DataForcesAndSourcesCore::EntData EntData
Data on single entity (This is passed as argument to DataOperator::doWork)

◆ constructor_derived_data()

static void MoFEM::constructor_derived_data ( DerivedDataForcesAndSourcesCore derived_data,
const boost::shared_ptr< DataForcesAndSourcesCore > &  data_ptr 
)
static

Definition at line 128 of file DataStructures.cpp.

130  {
131 
133  using DerivedEntData = DerivedDataForcesAndSourcesCore::DerivedEntData;
134 
135  for (int tt = MBVERTEX; tt != MBMAXTYPE; ++tt) {
136  auto &ent_data = data_ptr->dataOnEntities[tt];
137  auto &derived_ent_data = derived_data->dataOnEntities[tt];
138  for (auto &e : ent_data) {
139  boost::shared_ptr<EntData> ent_data_ptr(data_ptr, &e);
140  derived_ent_data.push_back(new DerivedEntData(ent_data_ptr));
141  }
142  }
143 }
DataForcesAndSourcesCore::EntData EntData
Data on single entity (This is passed as argument to DataOperator::doWork)

◆ dEterminant()

template<class T >
static double MoFEM::dEterminant ( T t)
static

Calculate the determinant of a 3x3 matrix or a tensor of rank 2.

Template Parameters
T
Parameters
t
Returns
double
Examples
EshelbianOperators.cpp, and EshelbianPlasticity.cpp.

Definition at line 492 of file Templates.hpp.

492  {
493  return t(0, 0) * t(1, 1) * t(2, 2) + t(1, 0) * t(2, 1) * t(0, 2) +
494  t(2, 0) * t(0, 1) * t(1, 2) - t(0, 0) * t(2, 1) * t(1, 2) -
495  t(2, 0) * t(1, 1) * t(0, 2) - t(1, 0) * t(0, 1) * t(2, 2);
496 }

◆ determinantTensor2by2()

template<class T1 , class T2 >
MoFEMErrorCode MoFEM::determinantTensor2by2 ( T1 &  t,
T2 &  det 
)

Calculate determinant 2 by 2.

Definition at line 535 of file Templates.hpp.

535  {
537  det = t(0, 0) * t(1, 1) - t(0, 1) * t(1, 0);
539 }
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:509
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:516

◆ determinantTensor3by3()

template<class T1 , class T2 >
MoFEMErrorCode MoFEM::determinantTensor3by3 ( T1 &  t,
T2 &  det 
)

Calculate determinant 3 by 3.

Examples
HookeElement.cpp, HookeElement.hpp, lorentz_force.cpp, Remodeling.cpp, and Remodeling.hpp.

Definition at line 522 of file Templates.hpp.

522  {
524  det = +t(0, 0) * t(1, 1) * t(2, 2) + t(1, 0) * t(2, 1) * t(0, 2) +
525  t(2, 0) * t(0, 1) * t(1, 2) - t(0, 0) * t(2, 1) * t(1, 2) -
526  t(2, 0) * t(1, 1) * t(0, 2) - t(1, 0) * t(0, 1) * t(2, 2);
528 }
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:509
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:516

◆ DMMoFEMDuplicateDMCtx()

PetscErrorCode MoFEM::DMMoFEMDuplicateDMCtx ( DM  dm,
DM  dm_duplicate 
)

Duplicate internal data struture.

Parameters
dm
dm_duplicate
Returns
PetscErrorCode

Definition at line 160 of file DMMMoFEM.cpp.

160  {
162 
163  auto *dm_field = static_cast<DMCtx *>(dm->data);
164  if (!dm->data)
165  SETERRQ(PETSC_COMM_SELF, MOFEM_NOT_IMPLEMENTED,
166  "data structure for MoFEM not yet created");
167 
168  if (static_cast<DMCtx *>(dm_duplicate->data)->referenceNumber == 0)
169  delete static_cast<DMCtx *>(dm_duplicate->data);
170 
171  dm_duplicate->data = dm->data;
172  ++(static_cast<DMCtx *>(dm_duplicate->data)->referenceNumber);
173 
175 }
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:485
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:415

◆ DMMoFEMGetDestroyProblem()

PetscErrorCode MoFEM::DMMoFEMGetDestroyProblem ( DM  dm,
PetscBool *  destroy_problem 
)

Get if problem will be destroyed with DM

Parameters
dmthe DM object
destroyreturn if PETSC_TRUE problem is destroyed
Returns
error code

Definition at line 369 of file DMMMoFEM.cpp.

369  {
371  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
373  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
374  *destroy_problem = dm_field->destroyProblem;
376 }
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:509
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:516

◆ DMMoFEMGetSubColIS()

PetscErrorCode MoFEM::DMMoFEMGetSubColIS ( DM  dm,
IS *  is 
)

get sub problem is

Parameters
dmhas to be created with DMMoFEMSetSquareProblem
isreturn is on the row
Returns
error code

Returns IS with global indices of the DM used to create SubDM

Definition at line 271 of file DMMMoFEM.cpp.

271  {
273  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
275  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
276  if (dm_field->isSubDM != PETSC_TRUE) {
277  SETERRQ(PETSC_COMM_SELF, MOFEM_NOT_IMPLEMENTED,
278  "This DM is not created as a SubDM");
279  }
280  if (dm_field->isProblemBuild != PETSC_TRUE) {
281  SETERRQ(PETSC_COMM_SELF, MOFEM_NOT_IMPLEMENTED, "Problem is not build");
282  }
283  boost::shared_ptr<Problem::SubProblemData> sub_data =
284  dm_field->problemPtr->getSubData();
285  CHKERR sub_data->getColIs(is);
287 }
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:509
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:485
#define CHKERR
Inline error check.
Definition: definitions.h:604
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:415

◆ DMMoFEMGetSubRowIS()

PetscErrorCode MoFEM::DMMoFEMGetSubRowIS ( DM  dm,
IS *  is 
)

get sub problem is

Parameters
dmhas to be created with DMMoFEMSetSquareProblem
isreturn is on the row
Returns
error code

Returns IS with global indices of the DM used to create SubDM

Examples
analytical_poisson_field_split.cpp.

Definition at line 253 of file DMMMoFEM.cpp.

253  {
255  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
257  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
258  if (dm_field->isSubDM != PETSC_TRUE) {
259  SETERRQ(PETSC_COMM_SELF, MOFEM_NOT_IMPLEMENTED,
260  "This DM is not created as a SubDM");
261  }
262  if (dm_field->isProblemBuild != PETSC_TRUE) {
263  SETERRQ(PETSC_COMM_SELF, MOFEM_NOT_IMPLEMENTED, "Problem is not build");
264  }
265  boost::shared_ptr<Problem::SubProblemData> sub_data =
266  dm_field->problemPtr->getSubData();
267  CHKERR sub_data->getRowIs(is);
269 }
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:509
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:485
#define CHKERR
Inline error check.
Definition: definitions.h:604
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:415

◆ DMMoFEMKSPSetComputeOperators()

template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode MoFEM::DMMoFEMKSPSetComputeOperators ( DM  dm,
fe_name,
T0  method,
T1  pre_only,
T2  post_only 
)
static

Definition at line 578 of file DMMMoFEM.cpp.

579  {
580  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
582  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
583  if (pre_only) {
584  dm_field->kspCtx->get_preProcess_to_do_Mat().push_back(pre_only);
585  }
586  if (method) {
587  dm_field->kspCtx->get_loops_to_do_Mat().push_back(
588  PairNameFEMethodPtr(fe_name, method));
589  }
590  if (post_only) {
591  dm_field->kspCtx->get_postProcess_to_do_Mat().push_back(post_only);
592  }
593  CHKERR DMKSPSetComputeOperators(dm, KspMat, dm_field->kspCtx.get());
595 }
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:485
PetscErrorCode KspMat(KSP ksp, Mat A, Mat B, void *ctx)
Run over elenents in the list.
Definition: KspCtx.cpp:87
#define CHKERR
Inline error check.
Definition: definitions.h:604
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:415

◆ DMMoFEMKSPSetComputeRHS()

template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode MoFEM::DMMoFEMKSPSetComputeRHS ( DM  dm,
fe_name,
T0  method,
T1  pre_only,
T2  post_only 
)
static

Definition at line 537 of file DMMMoFEM.cpp.

538  {
539  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
541  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
542  if (pre_only) {
543  dm_field->kspCtx->get_preProcess_to_do_Rhs().push_back(pre_only);
544  }
545  if (method) {
546  dm_field->kspCtx->get_loops_to_do_Rhs().push_back(
547  PairNameFEMethodPtr(fe_name, method));
548  }
549  if (post_only) {
550  dm_field->kspCtx->get_postProcess_to_do_Rhs().push_back(post_only);
551  }
552  CHKERR DMKSPSetComputeRHS(dm, KspRhs, dm_field->kspCtx.get());
554 }
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:485
PetscErrorCode KspRhs(KSP ksp, Vec f, void *ctx)
Run over elements in the lists.
Definition: KspCtx.cpp:23
#define CHKERR
Inline error check.
Definition: definitions.h:604
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:415

◆ DMMoFEMResolveSharedEntities()

PetscErrorCode MoFEM::DMMoFEMResolveSharedEntities ( DM  dm,
const char  fe_name[] 
)
Deprecated:
Use DMMoFEMResolveSharedFiniteElements

Definition at line 397 of file DMMMoFEM.cpp.

397  {
398  return DMMoFEMResolveSharedFiniteElements(dm, fe_name);
399 }
PetscErrorCode DMMoFEMResolveSharedFiniteElements(DM dm, const char fe_name[])
Resolve shared entities.
Definition: DMMMoFEM.cpp:387

◆ DMMoFEMSetDestroyProblem()

PetscErrorCode MoFEM::DMMoFEMSetDestroyProblem ( DM  dm,
PetscBool  destroy_problem 
)

If this is set to PETSC_TRUE problem is deleted with DM

Parameters
dmthe DM object
destroyif PETSC_TRUE problem is destroyed
Returns
error code
Examples
EshelbianPlasticity.cpp.

Definition at line 360 of file DMMMoFEM.cpp.

360  {
362  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
364  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
365  dm_field->destroyProblem = destroy_problem;
367 }
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:509
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:516

◆ DMMoFEMSetVerbosity()

PetscErrorCode MoFEM::DMMoFEMSetVerbosity ( DM  dm,
const int  verb 
)

Set verbosity level.

Parameters
dm
verbsee VERBOSITY_LEVELS for list of the levels
Returns
PetscErrorCode

Definition at line 1341 of file DMMMoFEM.cpp.

1341  {
1342  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1344  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
1345  dm_field->verbosity = verb;
1347 }
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:509
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:516

◆ DMMoFEMSNESSetFunction()

template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode MoFEM::DMMoFEMSNESSetFunction ( DM  dm,
fe_name,
T0  method,
T1  pre_only,
T2  post_only 
)
static

Definition at line 618 of file DMMMoFEM.cpp.

619  {
620  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
622  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
623  if (pre_only) {
624  dm_field->snesCtx->get_preProcess_to_do_Rhs().push_back(pre_only);
625  }
626  if (method) {
627  dm_field->snesCtx->get_loops_to_do_Rhs().push_back(
628  PairNameFEMethodPtr(fe_name, method));
629  }
630  if (post_only) {
631  dm_field->snesCtx->get_postProcess_to_do_Rhs().push_back(post_only);
632  }
633  CHKERR DMSNESSetFunction(dm, SnesRhs, dm_field->snesCtx.get());
635 }
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:485
#define CHKERR
Inline error check.
Definition: definitions.h:604
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:415
PetscErrorCode SnesRhs(SNES snes, Vec x, Vec f, void *ctx)
This is MoFEM implementation for the right hand side (residual vector) evaluation in SNES solver.
Definition: SnesCtx.cpp:17

◆ DMMoFEMSNESSetJacobian()

template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode MoFEM::DMMoFEMSNESSetJacobian ( DM  dm,
fe_name,
T0  method,
T1  pre_only,
T2  post_only 
)
static

Definition at line 659 of file DMMMoFEM.cpp.

660  {
661  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
663  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
664  if (pre_only) {
665  dm_field->snesCtx->get_preProcess_to_do_Mat().push_back(pre_only);
666  }
667  if (method) {
668  dm_field->snesCtx->get_loops_to_do_Mat().push_back(
669  PairNameFEMethodPtr(fe_name, method));
670  }
671  if (post_only) {
672  dm_field->snesCtx->get_postProcess_to_do_Mat().push_back(post_only);
673  }
674  CHKERR DMSNESSetJacobian(dm, SnesMat, dm_field->snesCtx.get());
676 }
PetscErrorCode SnesMat(SNES snes, Vec x, Mat A, Mat B, void *ctx)
This is MoFEM implementation for the left hand side (tangent matrix) evaluation in SNES solver.
Definition: SnesCtx.cpp:126
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:485
#define CHKERR
Inline error check.
Definition: definitions.h:604
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:415

◆ DMMoFEMTSSetIFunction()

template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode MoFEM::DMMoFEMTSSetIFunction ( DM  dm,
fe_name,
T0  method,
T1  pre_only,
T2  post_only 
)
static

Definition at line 700 of file DMMMoFEM.cpp.

701  {
702  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
704  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
705  if (pre_only) {
706  dm_field->tsCtx->get_preProcess_to_do_IFunction().push_back(pre_only);
707  }
708  if (method) {
709  dm_field->tsCtx->get_loops_to_do_IFunction().push_back(
710  PairNameFEMethodPtr(fe_name, method));
711  }
712  if (post_only) {
713  dm_field->tsCtx->get_postProcess_to_do_IFunction().push_back(post_only);
714  }
715  CHKERR DMTSSetIFunction(dm, TsSetIFunction, dm_field->tsCtx.get());
717 }
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:485
PetscErrorCode TsSetIFunction(TS ts, PetscReal t, Vec u, Vec u_t, Vec F, void *ctx)
Set IFunction for TS solver.
Definition: TsCtx.cpp:17
#define CHKERR
Inline error check.
Definition: definitions.h:604
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:415

◆ DMMoFEMTSSetIJacobian()

template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode MoFEM::DMMoFEMTSSetIJacobian ( DM  dm,
fe_name,
T0  method,
T1  pre_only,
T2  post_only 
)
static

Definition at line 743 of file DMMMoFEM.cpp.

744  {
745  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
747  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
748  if (pre_only) {
749  dm_field->tsCtx->get_preProcess_to_do_IJacobian().push_back(pre_only);
750  }
751  if (method) {
752  dm_field->tsCtx->get_loops_to_do_IJacobian().push_back(
753  PairNameFEMethodPtr(fe_name, method));
754  }
755  if (post_only) {
756  dm_field->tsCtx->get_postProcess_to_do_IJacobian().push_back(post_only);
757  }
758  CHKERR DMTSSetIJacobian(dm, TsSetIJacobian, dm_field->tsCtx.get());
760 }
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:485
#define CHKERR
Inline error check.
Definition: definitions.h:604
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:415
PetscErrorCode TsSetIJacobian(TS ts, PetscReal t, Vec u, Vec u_t, PetscReal a, Mat A, Mat B, void *ctx)
Set function evaluating jacobina in TS solver.
Definition: TsCtx.cpp:120

◆ DMMoFEMTSSetMonitor() [1/3]

PetscErrorCode MoFEM::DMMoFEMTSSetMonitor ( DM  dm,
TS  ts,
const std::string  fe_name,
boost::shared_ptr< MoFEM::FEMethod method,
boost::shared_ptr< MoFEM::BasicMethod pre_only,
boost::shared_ptr< MoFEM::BasicMethod post_only 
)

Set Monitor To TS solver.

See PETSc documentaton here

Parameters
dm
tstime solver
fe_name
method
pre_only
post_only
Returns
PetscErrorCod
Examples
heat_equation.cpp, lesson7_plastic.cpp, lesson8_contact.cpp, reaction_diffusion.cpp, and wave_equation.cpp.

Definition at line 915 of file DMMMoFEM.cpp.

918  {
919  return DMMoFEMTSSetMonitor<const std::string,
920  boost::shared_ptr<MoFEM::FEMethod>,
921  boost::shared_ptr<MoFEM::BasicMethod>,
922  boost::shared_ptr<MoFEM::BasicMethod>>(
923  dm, ts, fe_name, method, pre_only, post_only);
925 }
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:516
static PetscErrorCode DMMoFEMTSSetMonitor(DM dm, TS ts, S fe_name, T0 method, T1 pre_only, T2 post_only)
Definition: DMMMoFEM.cpp:888

◆ DMMoFEMTSSetMonitor() [2/3]

PetscErrorCode MoFEM::DMMoFEMTSSetMonitor ( DM  dm,
TS  ts,
const char  fe_name[],
MoFEM::FEMethod method,
MoFEM::BasicMethod pre_only,
MoFEM::BasicMethod post_only 
)

Set Monitor To TS solver.

See PETSc documentaton here

Parameters
dm
tstime solver
fe_name
method
pre_only
post_only
Returns
PetscErrorCod

Definition at line 904 of file DMMMoFEM.cpp.

907  {
908  return DMMoFEMTSSetMonitor<const char *, MoFEM::FEMethod *,
910  dm, ts, fe_name, method, pre_only, post_only);
912 }
structure for User Loop Methods on finite elementsIt can be used to calculate stiffness matrices,...
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:516
static PetscErrorCode DMMoFEMTSSetMonitor(DM dm, TS ts, S fe_name, T0 method, T1 pre_only, T2 post_only)
Definition: DMMMoFEM.cpp:888
Data structure to exchange data between mofem and User Loop Methods.It allows to exchange data betwee...

◆ DMMoFEMTSSetMonitor() [3/3]

template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode MoFEM::DMMoFEMTSSetMonitor ( DM  dm,
TS  ts,
fe_name,
T0  method,
T1  pre_only,
T2  post_only 
)
static

Definition at line 888 of file DMMMoFEM.cpp.

889  {
890  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
892  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
893  if (pre_only)
894  dm_field->tsCtx->get_preProcess_to_do_Monitor().push_back(pre_only);
895  if (method)
896  dm_field->tsCtx->get_loops_to_do_Monitor().push_back(
897  PairNameFEMethodPtr(fe_name, method));
898  if (post_only)
899  dm_field->tsCtx->get_postProcess_to_do_Monitor().push_back(post_only);
900  CHKERR TSMonitorSet(ts, TsMonitorSet, dm_field->tsCtx.get(), PETSC_NULL);
902 }
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:485
PetscErrorCode TsMonitorSet(TS ts, PetscInt step, PetscReal t, Vec u, void *ctx)
Set monitor for TS solver.
Definition: TsCtx.cpp:209
#define CHKERR
Inline error check.
Definition: definitions.h:604
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:415

◆ DMMoFEMTSSetRHSFunction() [1/2]

PetscErrorCode MoFEM::DMMoFEMTSSetRHSFunction ( DM  dm,
const std::string  fe_name,
boost::shared_ptr< MoFEM::FEMethod method,
boost::shared_ptr< MoFEM::BasicMethod pre_only,
boost::shared_ptr< MoFEM::BasicMethod post_only 
)

set TS the right hand side function

See petsc documentation

Parameters
dm
fe_name
method
pre_only
post_only
Returns
PetscErrorCode
Examples
reaction_diffusion.cpp.

Definition at line 801 of file DMMMoFEM.cpp.

804  {
805  return DMMoFEMTSSetRHSFunction<const std::string,
806  boost::shared_ptr<MoFEM::FEMethod>,
807  boost::shared_ptr<MoFEM::BasicMethod>,
808  boost::shared_ptr<MoFEM::BasicMethod>>(
809  dm, fe_name, method, pre_only, post_only);
811 }
static PetscErrorCode DMMoFEMTSSetRHSFunction(DM dm, S fe_name, T0 method, T1 pre_only, T2 post_only)
Definition: DMMMoFEM.cpp:784
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:516

◆ DMMoFEMTSSetRHSFunction() [2/2]

template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode MoFEM::DMMoFEMTSSetRHSFunction ( DM  dm,
fe_name,
T0  method,
T1  pre_only,
T2  post_only 
)
static

Definition at line 784 of file DMMMoFEM.cpp.

785  {
786  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
788  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
789  if (pre_only)
790  dm_field->tsCtx->get_preProcess_to_do_RHSFunction().push_back(pre_only);
791  if (method)
792  dm_field->tsCtx->get_loops_to_do_RHSFunction().push_back(
793  PairNameFEMethodPtr(fe_name, method));
794  if (post_only)
795  dm_field->tsCtx->get_postProcess_to_do_RHSFunction().push_back(post_only);
796  CHKERR DMTSSetRHSFunction(dm, TsSetRHSFunction, dm_field->tsCtx.get());
798 }
PetscErrorCode TsSetRHSFunction(TS ts, PetscReal t, Vec u, Vec F, void *ctx)
TS solver function.
Definition: TsCtx.cpp:267
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:485
#define CHKERR
Inline error check.
Definition: definitions.h:604
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:415

◆ DMMoFEMTSSetRHSJacobian() [1/2]

PetscErrorCode MoFEM::DMMoFEMTSSetRHSJacobian ( DM  dm,
const std::string  fe_name,
boost::shared_ptr< MoFEM::FEMethod method,
boost::shared_ptr< MoFEM::BasicMethod pre_only,
boost::shared_ptr< MoFEM::BasicMethod post_only 
)

set TS the right hand side jacobian

See petsc documentation

Parameters
dm
fe_name
method
pre_only
post_only
Returns
PetscErrorCode

Definition at line 831 of file DMMMoFEM.cpp.

834  {
835  return DMMoFEMTSSetRHSJacobian<const std::string,
836  boost::shared_ptr<MoFEM::FEMethod>,
837  boost::shared_ptr<MoFEM::BasicMethod>,
838  boost::shared_ptr<MoFEM::BasicMethod>>(
839  dm, fe_name, method, pre_only, post_only);
841 }
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:516
static PetscErrorCode DMMoFEMTSSetRHSJacobian(DM dm, S fe_name, T0 method, T1 pre_only, T2 post_only)
Definition: DMMMoFEM.cpp:814

◆ DMMoFEMTSSetRHSJacobian() [2/2]

template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode MoFEM::DMMoFEMTSSetRHSJacobian ( DM  dm,
fe_name,
T0  method,
T1  pre_only,
T2  post_only 
)
static

Definition at line 814 of file DMMMoFEM.cpp.

815  {
816  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
818  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
819  if (pre_only)
820  dm_field->tsCtx->get_preProcess_to_do_RHSFunction().push_back(pre_only);
821  if (method)
822  dm_field->tsCtx->get_loops_to_do_RHSFunction().push_back(
823  PairNameFEMethodPtr(fe_name, method));
824  if (post_only)
825  dm_field->tsCtx->get_postProcess_to_do_RHSFunction().push_back(post_only);
826  CHKERR DMTSSetRHSJacobian(dm, TsSetRHSJacobian, dm_field->tsCtx.get());
828 }
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:485
#define CHKERR
Inline error check.
Definition: definitions.h:604
PetscErrorCode TsSetRHSJacobian(TS ts, PetscReal t, Vec u, Mat A, Mat B, void *ctx)
TS solver function.
Definition: TsCtx.cpp:365
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:415

◆ f_TSMonitorSet()

DEPRECATED PetscErrorCode MoFEM::f_TSMonitorSet ( TS  ts,
PetscInt  step,
PetscReal  t,
Vec  u,
void *  ctx 
)
Deprecated:
Do not use, change to TsMonitorSet
Examples
Remodeling.cpp.

Definition at line 327 of file TsCtx.hpp.

328  {
329  return TsMonitorSet(ts, step, t, u, ctx);
330 }
PetscErrorCode TsMonitorSet(TS ts, PetscInt step, PetscReal t, Vec u, void *ctx)
Set monitor for TS solver.
Definition: TsCtx.cpp:209

◆ f_TSSetIFunction()

DEPRECATED PetscErrorCode MoFEM::f_TSSetIFunction ( TS  ts,
PetscReal  t,
Vec  u,
Vec  u_t,
Vec  F,
void *  ctx 
)

\deprecate Do not use, change to TsSetIFunction

Definition at line 314 of file TsCtx.hpp.

315  {
316  return TsSetIFunction(ts, t, u, u_t, F, ctx);
317 }
PetscErrorCode TsSetIFunction(TS ts, PetscReal t, Vec u, Vec u_t, Vec F, void *ctx)
Set IFunction for TS solver.
Definition: TsCtx.cpp:17

◆ f_TSSetIJacobian()

DEPRECATED PetscErrorCode MoFEM::f_TSSetIJacobian ( TS  ts,
PetscReal  t,
Vec  u,
Vec  u_t,
PetscReal  a,
Mat  A,
Mat  B,
void *  ctx 
)
Deprecated:
Do not use, change to TsSetIJacobian

Definition at line 320 of file TsCtx.hpp.

322  {
323  return TsSetIJacobian(ts, t, u, u_t, a, A, B, ctx);
324 }
PetscErrorCode TsSetIJacobian(TS ts, PetscReal t, Vec u, Vec u_t, PetscReal a, Mat A, Mat B, void *ctx)
Set function evaluating jacobina in TS solver.
Definition: TsCtx.cpp:120

◆ get_cache_data_dofs_view()

template<typename ENTSVIEW , typename DOFSVIEW , typename EXTRACTOR , typename INSERTER >
static MoFEMErrorCode MoFEM::get_cache_data_dofs_view ( ENTSVIEW &  ents_view,
DOFSVIEW &  dofs_view,
EXTRACTOR &&  extractor,
INSERTER &&  inserter 
)
static

Definition at line 537 of file FEMultiIndices.cpp.

538  {
540 
541  auto hint = dofs_view->end();
542  using ValType = typename std::remove_reference<decltype(**hint)>::type;
543 
544  for (auto &it : *ents_view) {
545  if (auto e = it.lock()) {
546 
547  if (auto cache = extractor(e).lock())
548  for (auto dit = cache->loHi[0]; dit != cache->loHi[1]; ++dit)
549  hint = inserter(dofs_view, hint,
550  boost::reinterpret_pointer_cast<ValType>(*dit));
551  else
552  SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY, "Cache not set");
553  }
554  }
555 
557 }
BlockParamData * cache
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:509
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:516

◆ get_id_for_max_type() [1/2]

template<EntityType TYPE>
EntityHandle MoFEM::get_id_for_max_type ( )

Definition at line 26 of file RefEntsMultiIndices.hpp.

26  {
27  return (static_cast<EntityHandle>(TYPE) << MB_ID_WIDTH) |
28  (~static_cast<EntityHandle>(MB_TYPE_MASK));
29 };
#define MB_TYPE_MASK
Definition: definitions.h:297
#define MB_ID_WIDTH
Definition: definitions.h:296

◆ get_id_for_max_type() [2/2]

EntityHandle MoFEM::get_id_for_max_type ( const EntityType  type)

Definition at line 35 of file RefEntsMultiIndices.hpp.

35  {
36  return (static_cast<EntityHandle>(type) << MB_ID_WIDTH) |
37  (~static_cast<EntityHandle>(MB_TYPE_MASK));
38 };
#define MB_TYPE_MASK
Definition: definitions.h:297
#define MB_ID_WIDTH
Definition: definitions.h:296

◆ get_id_for_min_type() [1/2]

template<EntityType TYPE>
EntityHandle MoFEM::get_id_for_min_type ( )

Definition at line 31 of file RefEntsMultiIndices.hpp.

31  {
32  return (static_cast<EntityHandle>(TYPE) << MB_ID_WIDTH);
33 };
#define MB_ID_WIDTH
Definition: definitions.h:296

◆ get_id_for_min_type() [2/2]

EntityHandle MoFEM::get_id_for_min_type ( const EntityType  type)

Definition at line 40 of file RefEntsMultiIndices.hpp.

40  {
41  return (static_cast<EntityHandle>(type) << MB_ID_WIDTH);
42 };
#define MB_ID_WIDTH
Definition: definitions.h:296

◆ get_sub_iface_options_imp() [1/2]

template<class T >
static auto MoFEM::get_sub_iface_options_imp ( T *const  ptr,
int   
) -> decltype(ptr->getSubInterfaceOptions())
static

Definition at line 126 of file Core.cpp.

127  {
128  return ptr->getSubInterfaceOptions();
129 };

◆ get_sub_iface_options_imp() [2/2]

template<class T >
static auto MoFEM::get_sub_iface_options_imp ( T *const  ptr,
long   
) -> MoFEMErrorCode
static

Definition at line 134 of file Core.cpp.

134  {
135  return 0;
136 };

◆ get_tag_ptr()

void* MoFEM::get_tag_ptr ( moab::Interface &  moab,
Tag  th,
EntityHandle  ent,
int *  tag_size 
)

Get the tag ptr object.

Parameters
moab
th
ent
tag_size
Returns
void*

Definition at line 53 of file RefEntsMultiIndices.hpp.

54  {
55  void *ret_val;
56  rval = moab.tag_get_by_ptr(th, &ent, 1, (const void **)&ret_val, tag_size);
57  if (rval != MB_SUCCESS) {
58  if (tag_size)
59  *tag_size = 0;
60  return NULL;
61  } else {
62  return ret_val;
63  }
64 }
static MoFEMErrorCodeGeneric< moab::ErrorCode > rval
Definition: Exceptions.hpp:85

◆ get_value()

template<class TYPE >
static MoFEMErrorCode MoFEM::get_value ( MatrixDouble pts_x,
MatrixDouble pts_t,
TYPE *  ctx 
)
static

Definition at line 52 of file JacobiPolynomial.cpp.

53  {
55  ctx->baseFunPtr->resize(pts_x.size2(), ctx->P + 1, false);
56  ctx->baseDiffFunPtr->resize(pts_x.size2(), ctx->dIm * (ctx->P + 1), false);
57  if (pts_x.size1() != pts_t.size1() || pts_x.size2() != pts_t.size2()) {
58  SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
59  "Inconsistent size of arguments");
60  }
61  double *l = NULL;
62  double *diff_l = NULL;
63  for (unsigned int gg = 0; gg < pts_x.size2(); gg++) {
64  if (ctx->baseFunPtr)
65  l = &((*ctx->baseFunPtr)(gg, 0));
66  if (ctx->baseDiffFunPtr)
67  diff_l = &((*ctx->baseDiffFunPtr)(gg, 0));
68  ierr = (ctx->basePolynomialsType1)(ctx->P, ctx->aLpha, pts_x(0, gg),
69  pts_t(0, gg), ctx->diffX, ctx->diffT, l,
70  diff_l, ctx->dIm);
71  CHKERRG(ierr);
72  }
74 }
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:509
#define CHKERRG(n)
Check error code of MoFEM/MOAB/PETSc function.
Definition: definitions.h:552
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:516
static Index< 'l', 3 > l

◆ getCommFromPetscObject()

MPI_Comm MoFEM::getCommFromPetscObject ( PetscObject  obj)

Get the Comm From Petsc Object object.

Parameters
obj
Returns
MPI_Comm

Definition at line 189 of file AuxPETSc.hpp.

189  {
190  MPI_Comm comm;
191  ierr = PetscObjectGetComm(obj, &comm);
192  CHKERRABORT(PETSC_COMM_SELF, ierr);
193  return comm;
194 };

◆ getFTensor0FromVec()

template<class T , class A >
static FTensor::Tensor0<FTensor::PackPtr<double *, 1> > MoFEM::getFTensor0FromVec ( ublas::vector< T, A > &  data)
static

Get tensor rank 0 (scalar) form data vector.

Example how to use it.

vec.resize(nb_gauss_pts,false);
vec.clear();
auto t0 = getFTensor0FromData(data);
for(int gg = 0;gg!=nb_gauss_pts;gg++) {
++t0;
}
Examples
ElasticityMixedFormulation.hpp, hcurl_check_approx_in_2d.cpp, heat_equation.hpp, HookeElement.cpp, lesson3_poisson.cpp, lesson6_radiation.cpp, PoissonOperators.hpp, reaction_diffusion.cpp, Remodeling.cpp, scalar_check_approximation_2d.cpp, testing_jacobian_of_hook_scaled_with_density_element.cpp, UnsaturatedFlow.hpp, and wave_equation.hpp.

Definition at line 143 of file Templates.hpp.

143  {
144  static_assert(!std::is_same<T, T>::value, "not implemented");
146 }

◆ getFTensor0FromVec< double, DoubleAllocator >()

Definition at line 150 of file Templates.hpp.

151  {
152  return FTensor::Tensor0<FTensor::PackPtr<double *, 1>>(&*data.data().begin());
153 }

◆ getFTensor1FromMat() [1/2]

template<int Tensor_Dim, class T , class L , class A >
static FTensor::Tensor1<FTensor::PackPtr<T *, 1>, Tensor_Dim> MoFEM::getFTensor1FromMat ( ublas::matrix< T, L, A > &  data)
static

Get tensor rank 1 (vector) form data matrix.

Definition at line 160 of file Templates.hpp.

160  {
161  static_assert(!std::is_same<T, T>::value, "not implemented");
162 }

◆ getFTensor1FromMat() [2/2]

template<int Tensor_Dim>
static FTensor::Tensor1<FTensor::PackPtr<double *, 1>, Tensor_Dim> MoFEM::getFTensor1FromMat ( MatrixDouble data)
static

Get tensor rank 1 (vector) form data matrix (specialization)

Definition at line 169 of file Templates.hpp.

169  {
170  return getFTensor1FromMat<Tensor_Dim, double, ublas::row_major,
171  DoubleAllocator>(data);
172 }
static FTensor::Tensor1< FTensor::PackPtr< double *, 1 >, Tensor_Dim > getFTensor1FromMat(MatrixDouble &data)
Get tensor rank 1 (vector) form data matrix (specialization)
Definition: Templates.hpp:169
std::vector< double, std::allocator< double > > DoubleAllocator
Definition: Types.hpp:70

◆ getFTensor1FromMat< 2, double, ublas::row_major, DoubleAllocator >()

template<>
FTensor::Tensor1<FTensor::PackPtr<double *, 1>, 2> MoFEM::getFTensor1FromMat< 2, double, ublas::row_major, DoubleAllocator > ( MatrixDouble data)

Definition at line 189 of file Templates.hpp.

190  {
191  if (data.size1() != 2)
192  THROW_MESSAGE("getFTensor1FromMat<2>: wrong size of data matrix, number of "
193  "rows should be 2 but is %d" +
194  boost::lexical_cast<std::string>(data.size1()));
195 
196  return FTensor::Tensor1<FTensor::PackPtr<double *, 1>, 2>(&data(0, 0),
197  &data(1, 0));
198 }
#define THROW_MESSAGE(a)
Throw MoFEM exception.
Definition: definitions.h:628

◆ getFTensor1FromMat< 3, double, ublas::row_major, DoubleAllocator >()

template<>
FTensor::Tensor1<FTensor::PackPtr<double *, 1>, 3> MoFEM::getFTensor1FromMat< 3, double, ublas::row_major, DoubleAllocator > ( MatrixDouble data)

Definition at line 176 of file Templates.hpp.

177  {
178  if (data.size1() != 3)
179  THROW_MESSAGE("getFTensor1FromMat<3>: wrong size of data matrix, number of "
180  "rows should be 3 but is %d" +
181  boost::lexical_cast<std::string>(data.size1()));
182 
184  &data(0, 0), &data(1, 0), &data(2, 0));
185 }
#define THROW_MESSAGE(a)
Throw MoFEM exception.
Definition: definitions.h:628

◆ getFTensor1FromPtr()

template<int DIM>
FTensor::Tensor1<FTensor::PackPtr<double *, DIM>, DIM> MoFEM::getFTensor1FromPtr ( double ptr)

Make Tensor1 from pointer.

Template Parameters
DIM
Parameters
ptr
Returns
FTensor::Tensor2<FTensor::PackPtr<double *, 3 * DIM>, 3, DIM>

Definition at line 436 of file Templates.hpp.

436  {
437  static_assert(DIM != 3,
438  "Such getFTensor1FromPtr specialization is not implemented");
439 };

◆ getFTensor1FromPtr< 3 >()

Definition at line 443 of file Templates.hpp.

443  {
445  &ptr[HVEC0], &ptr[HVEC1], &ptr[HVEC2]);
446 };

◆ getFTensor2FromMat() [1/5]

template<int Tensor_Dim0, int Tensor_Dim1, class T , class L , class A >
static FTensor::Tensor2<FTensor::PackPtr<T *, 1>, Tensor_Dim0, Tensor_Dim1> MoFEM::getFTensor2FromMat ( ublas::matrix< T, L, A > &  data)
static

Get tensor rank 2 (matrix) form data matrix.

Definition at line 206 of file Templates.hpp.

206  {
207  static_assert(!std::is_same<T, T>::value,
208  "Such getFTensor2FromMat specialisation is not implemented");
209 }

◆ getFTensor2FromMat() [2/5]

template<>
FTensor::Tensor2<FTensor::PackPtr<double *, 1>, 3, 3> MoFEM::getFTensor2FromMat ( MatrixDouble data)

Template specialization for getFTensor2FromMat

Definition at line 217 of file Templates.hpp.

217  {
218  if (data.size1() != 9)
219  THROW_MESSAGE("getFTensor2FromMat<3,3>: wrong size of data matrix; numer "
220  "of rows should be 9 but is " +
221  boost::lexical_cast<std::string>(data.size1()));
222 
224  &data(0, 0), &data(1, 0), &data(2, 0), &data(3, 0), &data(4, 0),
225  &data(5, 0), &data(6, 0), &data(7, 0), &data(8, 0));
226 }
#define THROW_MESSAGE(a)
Throw MoFEM exception.
Definition: definitions.h:628

◆ getFTensor2FromMat() [3/5]

template<>
FTensor::Tensor2<FTensor::PackPtr<double *, 1>, 3, 2> MoFEM::getFTensor2FromMat ( MatrixDouble data)

Template specialization for getFTensor2FromMat

Definition at line 233 of file Templates.hpp.

233  {
234  if (data.size1() != 6)
235  THROW_MESSAGE("getFTensor2FromMat<3,3>: wrong size of data matrix, numer "
236  "of rows should be 6 but is " +
237  boost::lexical_cast<std::string>(data.size1()));
238 
240  &data(0, 0), &data(1, 0), &data(2, 0), &data(3, 0), &data(4, 0),
241  &data(5, 0));
242 }
#define THROW_MESSAGE(a)
Throw MoFEM exception.
Definition: definitions.h:628

◆ getFTensor2FromMat() [4/5]

template<>
FTensor::Tensor2<FTensor::PackPtr<double *, 1>, 2, 2> MoFEM::getFTensor2FromMat ( MatrixDouble data)

Template specialization for getFTensor2FromMat

Definition at line 249 of file Templates.hpp.

249  {
250  if (data.size1() != 4)
251  THROW_MESSAGE("getFTensor2FromMat<2,2>: wrong size of data matrix, numer "
252  "of rows should be 4 but is " +
253  boost::lexical_cast<std::string>(data.size1()));
254 
256  &data(0, 0), &data(1, 0), &data(2, 0), &data(3, 0));
257 }
#define THROW_MESSAGE(a)
Throw MoFEM exception.
Definition: definitions.h:628

◆ getFTensor2FromMat() [5/5]

template<int Tensor_Dim0, int Tensor_Dim1>
static FTensor::Tensor2<FTensor::PackPtr<double *, 1>, Tensor_Dim0, Tensor_Dim1> MoFEM::getFTensor2FromMat ( MatrixDouble data)
static

Get tensor rank 2 (matrix) form data matrix (specialization)

Definition at line 265 of file Templates.hpp.

265  {
266  return getFTensor2FromMat<Tensor_Dim0, Tensor_Dim1, double, ublas::row_major,
267  DoubleAllocator>(data);
268 }
static FTensor::Tensor2< FTensor::PackPtr< double *, 1 >, Tensor_Dim0, Tensor_Dim1 > getFTensor2FromMat(MatrixDouble &data)
Get tensor rank 2 (matrix) form data matrix (specialization)
Definition: Templates.hpp:265
std::vector< double, std::allocator< double > > DoubleAllocator
Definition: Types.hpp:70

◆ getFTensor2FromPtr()

template<int DIM1, int DIM2>
FTensor::Tensor2<FTensor::PackPtr<double *, DIM1 * DIM2>, DIM1, DIM2> MoFEM::getFTensor2FromPtr ( double ptr)

Make Tensor2 from pointer.

Template Parameters
DIM
Parameters
ptr
Returns
FTensor::Tensor2<FTensor::PackPtr<double *, DIM1 * DIM2>, DIM1, DIM2>

Definition at line 457 of file Templates.hpp.

457  {
458  static_assert(DIM1 != 3, "Such getFTensor2FromPtr is not implemented");
459  static_assert(DIM2 >= 2 && DIM2 <= 3,
460  "Such getFTensor2FromPtr is not implemented");
461 };

◆ getFTensor2FromPtr< 3, 2 >()

template<>
FTensor::Tensor2<FTensor::PackPtr<double *, 6>, 3, 2> MoFEM::getFTensor2FromPtr< 3, 2 > ( double ptr)

Definition at line 465 of file Templates.hpp.

465  {
467  &ptr[HVEC0_0], &ptr[HVEC0_1],
468 
469  &ptr[HVEC1_0], &ptr[HVEC1_1],
470 
471  &ptr[HVEC2_0], &ptr[HVEC2_1]);
472 };

◆ getFTensor2FromPtr< 3, 3 >()

template<>
FTensor::Tensor2<FTensor::PackPtr<double *, 9>, 3, 3> MoFEM::getFTensor2FromPtr< 3, 3 > ( double ptr)

Definition at line 476 of file Templates.hpp.

476  {
478  &ptr[HVEC0_0], &ptr[HVEC0_1], &ptr[HVEC0_2],
479 
480  &ptr[HVEC1_0], &ptr[HVEC1_1], &ptr[HVEC1_2],
481 
482  &ptr[HVEC2_0], &ptr[HVEC2_1], &ptr[HVEC2_2]);
483 };

◆ getFTensor2SymmetricFromMat() [1/4]

template<int Tensor_Dim, class T , class L , class A >
static FTensor::Tensor2_symmetric<FTensor::PackPtr<T *, 1>, Tensor_Dim> MoFEM::getFTensor2SymmetricFromMat ( ublas::matrix< T, L, A > &  data)
static

Get symmetric tensor rank 2 (matrix) form data matrix.

Definition at line 275 of file Templates.hpp.

275  {
276  static_assert(
277  !std::is_same<T, T>::value,
278  "Such getFTensor2SymmetricFromMat specialisation is not implemented");
279 }

◆ getFTensor2SymmetricFromMat() [2/4]

template<>
FTensor::Tensor2_symmetric<FTensor::PackPtr<double *, 1>, 3> MoFEM::getFTensor2SymmetricFromMat ( MatrixDouble data)

Get symmetric tensor rank 2 form matrix of for dimension 3.

Specialisation for symmetric tensor 2

Template Parameters

Definition at line 292 of file Templates.hpp.

292  {
293  if (data.size1() != 6)
295  "getFTensor2SymmetricFromMat<3>: wrong size of data matrix, numer "
296  "of rows should be 6 but is " +
297  boost::lexical_cast<std::string>(data.size1()));
298 
300  &data(0, 0), &data(1, 0), &data(2, 0), &data(3, 0), &data(4, 0),
301  &data(5, 0));
302 }
#define THROW_MESSAGE(a)
Throw MoFEM exception.
Definition: definitions.h:628

◆ getFTensor2SymmetricFromMat() [3/4]

template<>
FTensor::Tensor2_symmetric<FTensor::PackPtr<double *, 1>, 2> MoFEM::getFTensor2SymmetricFromMat ( MatrixDouble data)

Get symmetric tensor rank 2 form matrix of for dimension 2.

Specialisation for symmetric tensor 2

Template Parameters

Definition at line 315 of file Templates.hpp.

315  {
316  if (data.size1() != 3)
318  "getFTensor2SymmetricFromMat<2>: wrong size of data matrix, numer "
319  "of rows should be 3 but is " +
320  boost::lexical_cast<std::string>(data.size1()));
322  &data(0, 0), &data(1, 0), &data(2, 0));
323 }
#define THROW_MESSAGE(a)
Throw MoFEM exception.
Definition: definitions.h:628

◆ getFTensor2SymmetricFromMat() [4/4]

template<int Tensor_Dim>
static FTensor::Tensor2_symmetric<FTensor::PackPtr<double *, 1>, Tensor_Dim> MoFEM::getFTensor2SymmetricFromMat ( MatrixDouble data)
static

Get symmetric tensor rank 2 form matrix.

Specialisation for symmetric tensor 2

Template Parameters
Tensor_Dim
Parameters
data
Returns
FTensor::Tensor2_symmetric<FTensor::PackPtr<double *, 1>, Tensor_Dim>

Definition at line 337 of file Templates.hpp.

337  {
339  DoubleAllocator>(data);
340 }
static FTensor::Tensor2_symmetric< FTensor::PackPtr< double *, 1 >, Tensor_Dim > getFTensor2SymmetricFromMat(MatrixDouble &data)
Get symmetric tensor rank 2 form matrix.
Definition: Templates.hpp:337
std::vector< double, std::allocator< double > > DoubleAllocator
Definition: Types.hpp:70

◆ getFTensor4DdgFromMat() [1/4]

template<int Tensor_Dim01, int Tensor_Dim23, class T , class L , class A >
static FTensor::Ddg<FTensor::PackPtr<T *, 1>, Tensor_Dim01, Tensor_Dim23> MoFEM::getFTensor4DdgFromMat ( ublas::matrix< T, L, A > &  data)
static

Get symmetric tensor rank 4 on first two and last indices from form data matrix.

Template Parameters
Tensor_Dim01dimension of frirst two indicies
Tensor_Dim23dimension of second two indicies
Tthe type of object stored
Lthe storage organization
Athe type of Storage array
Parameters
datadata container
Returns
FTensor::Ddg<FTensor::PackPtr<T *, 1>, Tensor_Dim01, TensorDim23>

Definition at line 356 of file Templates.hpp.

356  {
357  static_assert(!std::is_same<T, T>::value,
358  "Such getFTensor4DdgFromMat specialisation is not implemented");
359 }

◆ getFTensor4DdgFromMat() [2/4]

template<>
FTensor::Ddg<FTensor::PackPtr<double *, 1>, 1, 1> MoFEM::getFTensor4DdgFromMat ( MatrixDouble data)

Get symmetric tensor rank 4 on first two and last indices from form data matrix.

Parameters
datamatrix container which has 36 rows
Returns
FTensor::Ddg<FTensor::PackPtr<T *, 1>, Tensor_Dim01, TensorDim23>

Definition at line 370 of file Templates.hpp.

370  {
371  if (data.size1() != 1)
373  "getFTensor4DdgFromMat<3, 3>: wrong size of data matrix, number "
374  "of rows should be 36 but is " +
375  boost::lexical_cast<std::string>(data.size1()));
376 
377  return FTensor::Ddg<FTensor::PackPtr<double *, 1>, 1, 1>{&data(0, 0)};
378 }
#define THROW_MESSAGE(a)
Throw MoFEM exception.
Definition: definitions.h:628

◆ getFTensor4DdgFromMat() [3/4]

template<>
FTensor::Ddg<FTensor::PackPtr<double *, 1>, 2, 2> MoFEM::getFTensor4DdgFromMat ( MatrixDouble data)

Get symmetric tensor rank 4 on first two and last indices from form data matrix.

Parameters
datamatrix container which has 36 rows
Returns
FTensor::Ddg<FTensor::PackPtr<T *, 1>, Tensor_Dim01, TensorDim23>

Definition at line 389 of file Templates.hpp.

389  {
390  if(data.size1() != 9) THROW_MESSAGE(
391  "getFTensor4DdgFromMat<3, 3>: wrong size of data matrix, number "
392  "of rows should be 36 but is " +
393  boost::lexical_cast<std::string>(data.size1()));
394 
396  &data(0, 0), &data(1, 0), &data(2, 0), &data(3, 0), &data(4, 0),
397  &data(5, 0), &data(6, 0), &data(7, 0), &data(8, 0)};
398 }
#define THROW_MESSAGE(a)
Throw MoFEM exception.
Definition: definitions.h:628

◆ getFTensor4DdgFromMat() [4/4]

template<>
FTensor::Ddg<FTensor::PackPtr<double *, 1>, 3, 3> MoFEM::getFTensor4DdgFromMat ( MatrixDouble data)

Get symmetric tensor rank 4 on first two and last indices from form data matrix.

Parameters
datamatrix container which has 36 rows
Returns
FTensor::Ddg<FTensor::PackPtr<T *, 1>, Tensor_Dim01, TensorDim23>

Definition at line 409 of file Templates.hpp.

409  {
410  if (data.size1() != 36)
412  "getFTensor4DdgFromMat<3, 3>: wrong size of data matrix, number "
413  "of rows should be 36 but is " +
414  boost::lexical_cast<std::string>(data.size1()));
415 
417  &data(0, 0), &data(1, 0), &data(2, 0), &data(3, 0), &data(4, 0),
418  &data(5, 0), &data(6, 0), &data(7, 0), &data(8, 0), &data(9, 0),
419  &data(10, 0), &data(11, 0), &data(12, 0), &data(13, 0), &data(14, 0),
420  &data(15, 0), &data(16, 0), &data(17, 0), &data(18, 0), &data(19, 0),
421  &data(20, 0), &data(21, 0), &data(22, 0), &data(23, 0), &data(24, 0),
422  &data(25, 0), &data(26, 0), &data(27, 0), &data(28, 0), &data(29, 0),
423  &data(30, 0), &data(31, 0), &data(32, 0), &data(33, 0), &data(34, 0),
424  &data(35, 0)};
425 }
#define THROW_MESSAGE(a)
Throw MoFEM exception.
Definition: definitions.h:628

◆ getMatrixAdaptor()

template<typename T1 >
auto MoFEM::getMatrixAdaptor ( T1  ptr,
const size_t  n,
const size_t  m 
)

Get Matrix adaptor.

double *a;
CHKERR VecGetArray(v,&a);
for(int n = 0; n != nodes; ++n) {
auto F = getMatrixAdaptor(&a[3*3*n], 3, 3);
MatrixDouble C = prod(F, trans(F));
}
CHKERR VecRetsoreArray(v,&a);
Examples
field_evaluator.cpp.

Definition at line 70 of file Templates.hpp.

70  {
71  typedef typename std::remove_pointer<T1>::type T;
72  return MatrixShallowArrayAdaptor<T>(
73  n, m, ublas::shallow_array_adaptor<T>(n * m, ptr));
74 };
const double T
static Index< 'n', 3 > n
static Index< 'm', 3 > m

◆ getMaxOrder()

template<typename ENTMULTIINDEX >
static int MoFEM::getMaxOrder ( const ENTMULTIINDEX &  multi_index)
static

Definition at line 117 of file ForcesAndSourcesCore.cpp.

117  {
118  int max_order = 0;
119  for (auto ent_field_weak_ptr : multi_index)
120  if (auto e = ent_field_weak_ptr.lock()) {
121  const int order = e->getMaxOrder();
122  max_order = (max_order < order) ? order : max_order;
123  }
124  return max_order;
125 }
constexpr int order

◆ getPetscObject()

template<typename T >
PetscObject MoFEM::getPetscObject ( T  obj)

Definition at line 23 of file AuxPETSc.hpp.

23  {
24  return reinterpret_cast<PetscObject>(obj);
25 }

◆ getVectorAdaptor()

template<typename T1 >
auto MoFEM::getVectorAdaptor ( T1  ptr,
const size_t  n 
)

Get Vector adaptor.

double *a;
CHKERR VecGetArray(v,&a);
for(int n = 0; n != nodes; ++n) {
auto a = getVectorAdaptor(&a[3*n], 3);
double dot = inner_prod(a, a);
}
CHKERR VecRetsoreArray(v,&a);
Examples
bernstein_bezier_generate_base.cpp, and EshelbianPlasticity.cpp.

Definition at line 44 of file Templates.hpp.

44  {
45  typedef typename std::remove_pointer<T1>::type T;
46  return VectorShallowArrayAdaptor<T>(n,
47  ublas::shallow_array_adaptor<T>(n, ptr));
48 };
const double T
static Index< 'n', 3 > n

◆ Hcurl_Ainsworth_BubbleFaceFunctions_MBTET()

MoFEMErrorCode MoFEM::Hcurl_Ainsworth_BubbleFaceFunctions_MBTET ( int *  faces_nodes,
int *  p,
double N,
double diffN,
double phi_f[4],
double diff_phi_f[4],
int  nb_integration_pts,
PetscErrorCode(*)(int p, double s, double *diff_s, double *L, double *diffL, const int dim base_polynomials 
)

Face edge base functions of Hcurl space on face on tetrahedral.

On each face we have P*(P-1) base functions and are 4 faces.

See NBFACETRI_AINSWORTH_EDGE_HCURL

Parameters
face_nodesarray [4*3] of local indices of face nodes
papproximation order
Narray shape functions evaluated at each integration point
diffNderivatives of nodal shape functions
phi_f[4]calculated shape functions for each face
diff_phi_v[4]derivatives of shape functions for each face
nb_integration_ptsnumber of shape functions
base_polynomialspolynomial base function (f.e. Legendre of Lobatto)
Returns
error code

Definition at line 545 of file Hcurl.cpp.

550  {
551 
553 
556 
557  // double coords[] = { 0,0,0, 1,0,0, 0,1,0, 0,0,1 };
558  // FTensor::Tensor1<double*,3> t_coords[4] = {
559  // FTensor::Tensor1<double*,3>(&coords[0],&coords[ 1],&coords[ 2]),
560  // FTensor::Tensor1<double*,3>(&coords[3],&coords[ 4],&coords[ 5]),
561  // FTensor::Tensor1<double*,3>(&coords[6],&coords[ 7],&coords[ 8]),
562  // FTensor::Tensor1<double*,3>(&coords[9],&coords[10],&coords[11])
563  // };
564  FTensor::Tensor1<double *, 3> t_node_diff_ksi[4] = {
565  FTensor::Tensor1<double *, 3>(&diffN[0], &diffN[1], &diffN[2]),
566  FTensor::Tensor1<double *, 3>(&diffN[3], &diffN[4], &diffN[5]),
567  FTensor::Tensor1<double *, 3>(&diffN[6], &diffN[7], &diffN[8]),
568  FTensor::Tensor1<double *, 3>(&diffN[9], &diffN[10], &diffN[11])};
569  FTensor::Tensor1<double, 3> t_diff_ksi0i, t_diff_ksi0j;
570  FTensor::Tensor1<double, 3> diff_beta_0ij;
571 
574 
575  for (int ff = 0; ff != 4; ff++) {
576 
577  if (NBFACETRI_AINSWORTH_FACE_HCURL(p[ff]) == 0)
578  continue;
579 
580  int n0 = faces_nodes[3 * ff + 0];
581  int n1 = faces_nodes[3 * ff + 1];
582  int n2 = faces_nodes[3 * ff + 2];
583 
584  // tou_0i(i) = t_coords[n1](i)-t_coords[n0](i);
585  // tou_0j(i) = t_coords[n2](i)-t_coords[n0](i);
586  tou_0i(i) = t_node_diff_ksi[n1](i) - t_node_diff_ksi[n0](i);
587  tou_0j(i) = t_node_diff_ksi[n2](i) - t_node_diff_ksi[n0](i);
588 
589  t_diff_ksi0i(i) = t_node_diff_ksi[n1](i) - t_node_diff_ksi[n0](i);
590  t_diff_ksi0j(i) = t_node_diff_ksi[n2](i) - t_node_diff_ksi[n0](i);
591 
592  double psi_l_0i[p[ff] + 1], diff_psi_l_0i[3 * p[ff] + 3];
593  double psi_l_0j[p[ff] + 1], diff_psi_l_0j[3 * p[ff] + 3];
594 
595  FTensor::Tensor1<double *, 3> t_phi_f(&phi_f[ff][0], &phi_f[ff][1],
596  &phi_f[ff][2], 3);
598  &diff_phi_f[ff][0], &diff_phi_f[ff][3], &diff_phi_f[ff][6],
599  &diff_phi_f[ff][1], &diff_phi_f[ff][4], &diff_phi_f[ff][7],
600  &diff_phi_f[ff][2], &diff_phi_f[ff][5], &diff_phi_f[ff][8], 9);
602 
603  for (int ii = 0; ii != nb_integration_pts; ii++) {
604 
605  const int node_shift = ii * 4;
606  const double beta_0ij =
607  N[node_shift + n0] * N[node_shift + n1] * N[node_shift + n2];
608  diff_beta_0ij(i) =
609  t_node_diff_ksi[n0](i) * N[node_shift + n1] * N[node_shift + n2] +
610  N[node_shift + n0] * t_node_diff_ksi[n1](i) * N[node_shift + n2] +
611  N[node_shift + n0] * N[node_shift + n1] * t_node_diff_ksi[n2](i);
612 
613  const double ksi_0i = N[node_shift + n1] - N[node_shift + n0];
614  CHKERR base_polynomials(p[ff], ksi_0i, &t_diff_ksi0i(0), psi_l_0i,
615  diff_psi_l_0i, 3);
616 
617  const double ksi_0j = N[node_shift + n2] - N[node_shift + n0];
618  CHKERR base_polynomials(p[ff], ksi_0j, &t_diff_ksi0j(0), psi_l_0j,
619  diff_psi_l_0j, 3);
620 
621  int cc = 0;
622  for (int oo = 0; oo <= (p[ff] - 3); oo++) {
623  FTensor::Tensor1<double *, 3> t_diff_psi_l_0i(
624  &diff_psi_l_0i[0], &diff_psi_l_0i[p[ff] + 1],
625  &diff_psi_l_0i[2 * p[ff] + 2], 1);
626  for (int pp0 = 0; pp0 <= oo; pp0++) {
627  const int pp1 = oo - pp0;
628  if (pp1 >= 0) {
629  FTensor::Tensor1<double *, 3> t_diff_psi_l_0j(
630  &diff_psi_l_0j[pp1], &diff_psi_l_0j[p[ff] + 1 + pp1],
631  &diff_psi_l_0j[2 * p[ff] + 2 + pp1], 1);
632  // base functions
633  const double a = beta_0ij * psi_l_0i[pp0] * psi_l_0j[pp1];
634  t_phi_f(i) = a * tou_0i(i);
635  ++t_phi_f;
636  ++cc;
637  t_phi_f(i) = a * tou_0j(i);
638  ++t_phi_f;
639  ++cc;
640  // diff base functions
641  t_b(j) = diff_beta_0ij(j) * psi_l_0i[pp0] * psi_l_0j[pp1] +
642  beta_0ij * t_diff_psi_l_0i(j) * psi_l_0j[pp1] +
643  beta_0ij * psi_l_0i[pp0] * t_diff_psi_l_0j(j);
644  t_diff_phi_f(i, j) = t_b(j) * tou_0i(i);
645  ++t_diff_phi_f;
646  t_diff_phi_f(i, j) = t_b(j) * tou_0j(i);
647  ++t_diff_phi_f;
648  ++t_diff_psi_l_0i;
649  }
650  }
651  }
652  const int nb_base_fun_on_face = NBFACETRI_AINSWORTH_FACE_HCURL(p[ff]);
653  if (cc != nb_base_fun_on_face) {
654  SETERRQ2(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
655  "Wrong number of base functions %d != %d", cc,
656  nb_base_fun_on_face);
657  }
658  }
659  }
661 }
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:509
static Index< 'p', 3 > p
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:516
static Index< 'i', 3 > i
static Index< 'j', 3 > j
#define CHKERR
Inline error check.
Definition: definitions.h:604
const int N
Definition: speed_test.cpp:3
#define NBFACETRI_AINSWORTH_FACE_HCURL(P)

◆ Hcurl_Ainsworth_BubbleFaceFunctions_MBTET_ON_FACE()

MoFEMErrorCode MoFEM::Hcurl_Ainsworth_BubbleFaceFunctions_MBTET_ON_FACE ( int *  faces_nodes,
int  p,
double N,
double diffN,
double phi_f,
double diff_phi_f,
int  nb_integration_pts,
PetscErrorCode(*)(int p, double s, double *diff_s, double *L, double *diffL, const int dim base_polynomials 
)

Face edge base functions of Hcurl space on face.

On each face we have P*(P-1) base functions and are 4 faces.

See NBFACETRI_AINSWORTH_EDGE_HCURL

Parameters
face_nodesarray [4*3] of local indices of face nodes
papproximation order
Narray shape functions evaluated at each integration point
diffNderivatives of nodal shape functions
phi_f[4]calculated shape functions for each face
diff_phi_v[4]derivatives of shape functions for each face
nb_integration_ptsnumber of shape functions
base_polynomialspolynomial base function (f.e. Legendre of Lobatto)
Returns
error code

Definition at line 663 of file Hcurl.cpp.

668  {
669 
671 
672  double zero = 0;
673  FTensor::Tensor2<double *, 3, 3> t_node_diff_ksi(&diffN[0], &diffN[1], &zero,
674  &diffN[2], &diffN[3], &zero,
675  &diffN[4], &diffN[5], &zero);
676 
679 
682 
686 
687  const int node0 = faces_nodes[0];
688  const int node1 = faces_nodes[1];
689  const int node2 = faces_nodes[2];
690 
693 
694  tou_0i(i) = t_node_diff_ksi(N1, i) - t_node_diff_ksi(N0, i);
695  ;
696  tou_0j(i) = t_node_diff_ksi(N2, i) - t_node_diff_ksi(N0, i);
697  ;
698 
699  double psi_l_0i[p + 1], psi_l_0j[p + 1];
700  double diff_psi_l_0i[2 * p + 2], diff_psi_l_0j[2 * p + 2];
701  FTensor::Tensor1<double *, 3> t_phi_f(&phi_f[0], &phi_f[1], &phi_f[2], 3);
703  &diff_phi_f[HVEC0_0], &diff_phi_f[HVEC0_1], &diff_phi_f[HVEC1_0],
704  &diff_phi_f[HVEC1_1], &diff_phi_f[HVEC2_0], &diff_phi_f[HVEC2_1]);
705 
706  double diff_ksi_0i[] = {t_node_diff_ksi(node1, 0) - t_node_diff_ksi(node0, 0),
707  t_node_diff_ksi(node1, 1) -
708  t_node_diff_ksi(node0, 1)};
709  double diff_ksi_0j[] = {t_node_diff_ksi(node2, 0) - t_node_diff_ksi(node0, 0),
710  t_node_diff_ksi(node2, 1) -
711  t_node_diff_ksi(node0, 1)};
712 
713  for (int ii = 0; ii != nb_integration_pts; ii++) {
714 
715  const int node_shift = ii * 3;
716  const double n0 = N[node_shift + node0];
717  const double n1 = N[node_shift + node1];
718  const double n2 = N[node_shift + node2];
719 
720  const double beta_0ij = n0 * n1 * n2;
721  FTensor::Tensor1<double, 2> diff_beta_0ij(
722  t_node_diff_ksi(node0, 0) * n1 * n2 +
723  n0 * t_node_diff_ksi(node1, 0) * n2 +
724  n0 * n1 * t_node_diff_ksi(node2, 0),
725  t_node_diff_ksi(node0, 1) * n1 * n2 +
726  n0 * t_node_diff_ksi(node1, 1) * n2 +
727  n0 * n1 * t_node_diff_ksi(node2, 1));
728 
729  const double ksi_0i = N[node_shift + node1] - N[node_shift + node0];
730  CHKERR base_polynomials(p, ksi_0i, diff_ksi_0i, psi_l_0i, diff_psi_l_0i, 2);
731 
732  const double ksi_0j = N[node_shift + node2] - N[node_shift + node0];
733  CHKERR base_polynomials(p, ksi_0j, diff_ksi_0j, psi_l_0j, diff_psi_l_0j, 2);
734 
735  int cc = 0;
737  for (int oo = 0; oo <= (p - 3); oo++) {
738  for (int pp0 = 0; pp0 <= oo; pp0++) {
739  const int pp1 = oo - pp0;
740  if (pp1 >= 0) {
741  FTensor::Tensor1<double, 2> t_diff_psi_l_0i(
742  diff_psi_l_0i[0 + pp0], diff_psi_l_0i[p + 1 + pp0]);
743  FTensor::Tensor1<double, 2> t_diff_psi_l_0j(
744  diff_psi_l_0j[0 + pp1], diff_psi_l_0j[p + 1 + pp1]);
745  const double a = beta_0ij * psi_l_0i[pp0] * psi_l_0j[pp1];
746  t_diff_a(j) = diff_beta_0ij(j) * psi_l_0i[pp0] * psi_l_0j[pp1] +
747  beta_0ij * psi_l_0i[pp0] * t_diff_psi_l_0j(j) +
748  beta_0ij * psi_l_0j[pp1] * t_diff_psi_l_0i(j);
749 
750  t_phi_f(i) = a * tou_0i(i);
751  t_diff_phi_f(i, j) = tou_0i(i) * t_diff_a(j);
752  ++t_phi_f;
753  ++t_diff_phi_f;
754  ++cc;
755  t_phi_f(i) = a * tou_0j(i);
756  t_diff_phi_f(i, j) = tou_0j(i) * t_diff_a(j);
757  ++t_phi_f;
758  ++t_diff_phi_f;
759  ++cc;
760  }
761  }
762  }
763 
764  const int nb_base_fun_on_face = NBFACETRI_AINSWORTH_FACE_HCURL(p);
765  if (cc != nb_base_fun_on_face) {
766  SETERRQ2(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
767  "Wrong number of base functions %d != %d", cc,
768  nb_base_fun_on_face);
769  }
770  }
771 
773 }
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:509
static Index< 'p', 3 > p
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:516
static Index< 'i', 3 > i
static Number< 2 > N2
static Index< 'j', 3 > j
#define CHKERR
Inline error check.
Definition: definitions.h:604
static Number< 1 > N1
static Number< 0 > N0
const int N
Definition: speed_test.cpp:3
#define NBFACETRI_AINSWORTH_FACE_HCURL(P)

◆ Hcurl_Ainsworth_EdgeBasedFaceFunctions_MBTET()

MoFEMErrorCode MoFEM::Hcurl_Ainsworth_EdgeBasedFaceFunctions_MBTET ( int *  faces_nodes,
int *  p,
double N,
double diffN,
double phi_f_e[4][3],
double diff_phi_f_e[4][3],
int  nb_integration_pts,
PetscErrorCode(*)(int p, double s, double *diff_s, double *L, double *diffL, const int dim base_polynomials 
)

Face edge base functions of Hcurl space on tetrahedral.

On each edge we have (P-1) base functions, and each face has 3 edges and are 4 faces on tetrahedral.

See NBFACETRI_AINSWORTH_EDGE_HCURL

Parameters
face_nodesarray [4*3] of local indices of face nodes
papproximation order
Narray shape functions evaluated at each integration point
diffNderivatives of nodal shape functions
phi_f[4]calculated shape functions for each face
diff_phi_v[4]derivatives of shape functions for each face
nb_integration_ptsnumber of shape functions
base_polynomialspolynomial base function (f.e. Legendre of Lobatto)
Returns
error code

Definition at line 363 of file Hcurl.cpp.

368  {
369 
371  const int edges[3][2] = {{0, 1}, {1, 2}, {2, 0}};
372 
375 
376  FTensor::Tensor1<double *, 3> t_node_diff_ksi[4] = {
377  FTensor::Tensor1<double *, 3>(&diffN[0], &diffN[1], &diffN[2]),
378  FTensor::Tensor1<double *, 3>(&diffN[3], &diffN[4], &diffN[5]),
379  FTensor::Tensor1<double *, 3>(&diffN[6], &diffN[7], &diffN[8]),
380  FTensor::Tensor1<double *, 3>(&diffN[9], &diffN[10], &diffN[11])};
381  FTensor::Tensor1<double, 3> t_edge_diff_ksi;
382  FTensor::Tensor1<double, 3> t_diff_beta_e;
383 
384  for (int ff = 0; ff != 4; ff++) {
385 
386  const int o_nodes[3] = {faces_nodes[3 * ff + 2], faces_nodes[3 * ff + 0],
387  faces_nodes[3 * ff + 1]};
388  FTensor::Tensor1<double *, 3> t_opposite_node_diff[3] = {
389  FTensor::Tensor1<double *, 3>(&diffN[3 * o_nodes[0] + 0],
390  &diffN[3 * o_nodes[0] + 1],
391  &diffN[3 * o_nodes[0] + 2]),
392  FTensor::Tensor1<double *, 3>(&diffN[3 * o_nodes[1] + 0],
393  &diffN[3 * o_nodes[1] + 1],
394  &diffN[3 * o_nodes[1] + 2]),
395  FTensor::Tensor1<double *, 3>(&diffN[3 * o_nodes[2] + 0],
396  &diffN[3 * o_nodes[2] + 1],
397  &diffN[3 * o_nodes[2] + 2])};
398  double psi_l[p[ff] + 1], diff_psi_l[3 * p[ff] + 3];
399 
400  const int nb_base_fun_on_face = NBFACETRI_AINSWORTH_EDGE_HCURL(p[ff]);
401  // cerr << nb_base_fun_on_face << " " << p[ff] << endl;
402  if (nb_base_fun_on_face == 0)
403  continue;
404 
405  for (int ee = 0; ee != 3; ee++) {
406 
407  FTensor::Tensor1<double *, 3> t_face_edge_base(
408  &phi_f_e[ff][ee][0], &phi_f_e[ff][ee][1], &phi_f_e[ff][ee][2], 3);
409  FTensor::Tensor2<double *, 3, 3> t_diff_face_edge_base(
410  &diff_phi_f_e[ff][ee][0], &diff_phi_f_e[ff][ee][3],
411  &diff_phi_f_e[ff][ee][6], &diff_phi_f_e[ff][ee][1],
412  &diff_phi_f_e[ff][ee][4], &diff_phi_f_e[ff][ee][7],
413  &diff_phi_f_e[ff][ee][2], &diff_phi_f_e[ff][ee][5],
414  &diff_phi_f_e[ff][ee][8], 9);
415  const int en[] = {faces_nodes[3 * ff + edges[ee][0]],
416  faces_nodes[3 * ff + edges[ee][1]]};
417  t_edge_diff_ksi(i) =
418  t_node_diff_ksi[en[1]](i) - t_node_diff_ksi[en[0]](i);
419 
420  for (int ii = 0; ii != nb_integration_pts; ii++) {
421 
422  const int node_shift = ii * 4;
423  const double n[] = {N[node_shift + faces_nodes[3 * ff + edges[ee][0]]],
424  N[node_shift + faces_nodes[3 * ff + edges[ee][1]]]};
425  const double ksi_0i = n[1] - n[0];
426  CHKERR base_polynomials(p[ff], ksi_0i, &t_edge_diff_ksi(0), psi_l,
427  diff_psi_l, 3);
428 
429  FTensor::Tensor1<double *, 3> t_diff_psi_l(
430  &diff_psi_l[0], &diff_psi_l[p[ff] + 1], &diff_psi_l[2 * p[ff] + 2],
431  1);
432 
433  const double beta_e = n[0] * n[1];
434  t_diff_beta_e(j) =
435  t_node_diff_ksi[en[0]](j) * n[1] + n[0] * t_node_diff_ksi[en[1]](j);
436 
437  for (int ll = 0; ll != nb_base_fun_on_face; ll++) {
438  // if(ll == nb_base_fun_on_face-1) cerr << psi_l[ll] << endl;
439 
440  t_face_edge_base(i) =
441  beta_e * psi_l[ll] * t_opposite_node_diff[ee](i);
442  ++t_face_edge_base;
443 
444  t_diff_face_edge_base(i, j) =
445  (beta_e * t_diff_psi_l(j) + t_diff_beta_e(j) * psi_l[ll]) *
446  t_opposite_node_diff[ee](i);
447 
448  ++t_diff_face_edge_base;
449  ++t_diff_psi_l;
450  }
451  }
452  }
453  }
454 
456 }
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:509
static Index< 'p', 3 > p
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:516
static Index< 'n', 3 > n
static Index< 'i', 3 > i
static Index< 'j', 3 > j
#define CHKERR
Inline error check.
Definition: definitions.h:604
#define NBFACETRI_AINSWORTH_EDGE_HCURL(P)
const int N
Definition: speed_test.cpp:3

◆ Hcurl_Ainsworth_EdgeBasedFaceFunctions_MBTET_ON_FACE()

MoFEMErrorCode MoFEM::Hcurl_Ainsworth_EdgeBasedFaceFunctions_MBTET_ON_FACE ( int *  faces_nodes,
int  p,
double N,
double diffN,
double phi_f_e[3],
double diff_phi_f_e[3],
int  nb_integration_pts,
PetscErrorCode(*)(int p, double s, double *diff_s, double *L, double *diffL, const int dim base_polynomials 
)

Face edge base functions of Hcurl space.

On each edge we have (P-1) base functions, and each face has 3 edges and are 4 faces on tetrahedral.

See NBFACETRI_AINSWORTH_EDGE_HCURL

Parameters
face_nodesarray [4*3] of local indices of face nodes
papproximation order
Narray shape functions evaluated at each integration point
diffNderivatives of nodal shape functions
phi_f[4]calculated shape functions for each face
diff_phi_v[4]derivatives of shape functions for each face
nb_integration_ptsnumber of shape functions
base_polynomialspolynomial base function (f.e. Legendre of Lobatto)
Returns
error code

Definition at line 458 of file Hcurl.cpp.

463  {
464 
466 
467  const int nb_base_fun_on_face = NBFACETRI_AINSWORTH_EDGE_HCURL(p);
468  if (nb_base_fun_on_face == 0)
470 
471  const int edges[3][2] = {{0, 1}, {1, 2}, {2, 0}};
472 
475 
476  const int o_nodes[3] = {2, 0, 1};
477  FTensor::Tensor2<double, 3, 3> t_opposite_node_diff(
478  diffN[2 * o_nodes[0] + 0], diffN[2 * o_nodes[0] + 1], 0.,
479  diffN[2 * o_nodes[1] + 0], diffN[2 * o_nodes[1] + 1], 0.,
480  diffN[2 * o_nodes[2] + 0], diffN[2 * o_nodes[2] + 1], 0.);
481  double psi_l[p + 1];
482  double diff_psi_l[2 * p + 2];
483 
484  FTensor::Tensor1<double *, 3> t_face_edge_base[3] = {
485  FTensor::Tensor1<double *, 3>(&phi_f_e[0][HVEC0], &phi_f_e[0][HVEC1],
486  &phi_f_e[0][HVEC2], 3),
487  FTensor::Tensor1<double *, 3>(&phi_f_e[1][HVEC0], &phi_f_e[1][HVEC1],
488  &phi_f_e[1][HVEC2], 3),
489  FTensor::Tensor1<double *, 3>(&phi_f_e[2][HVEC0], &phi_f_e[2][HVEC1],
490  &phi_f_e[2][HVEC2], 3),
491  };
493  t_diff_face_edge_base[3] = {
495  &diff_phi_f_e[0][HVEC0_0], &diff_phi_f_e[0][HVEC0_1],
496  &diff_phi_f_e[0][HVEC1_0], &diff_phi_f_e[0][HVEC1_1],
497  &diff_phi_f_e[0][HVEC2_0], &diff_phi_f_e[0][HVEC2_1]),
499  &diff_phi_f_e[1][HVEC0_0], &diff_phi_f_e[1][HVEC0_1],
500  &diff_phi_f_e[1][HVEC1_0], &diff_phi_f_e[1][HVEC1_1],
501  &diff_phi_f_e[1][HVEC2_0], &diff_phi_f_e[1][HVEC2_1]),
503  &diff_phi_f_e[2][HVEC0_0], &diff_phi_f_e[2][HVEC0_1],
504  &diff_phi_f_e[2][HVEC1_0], &diff_phi_f_e[2][HVEC1_1],
505  &diff_phi_f_e[2][HVEC2_0], &diff_phi_f_e[2][HVEC2_1])};
506 
507  for (int ee = 0; ee != 3; ee++) {
508 
509  const int node0 = faces_nodes[edges[ee][0]];
510  const int node1 = faces_nodes[edges[ee][1]];
511  double diff_ksi0i[] = {diffN[2 * node1 + 0] - diffN[2 * node0 + 0],
512  diffN[2 * node1 + 1] - diffN[2 * node0 + 1]};
513 
514  for (int ii = 0; ii != nb_integration_pts; ii++) {
515 
516  const int node_shift = ii * 3;
517  const double n0 = N[node_shift + node0];
518  const double n1 = N[node_shift + node1];
519  const double ksi_0i = n1 - n0;
520  CHKERR base_polynomials(p, ksi_0i, diff_ksi0i, psi_l, diff_psi_l, 2);
521 
522  const double beta_e = n0 * n1;
523  FTensor::Tensor1<double, 2> t_diff_beta_e(
524  diffN[2 * node0 + 0] * n1 + n0 * diffN[2 * node1 + 0],
525  diffN[2 * node0 + 1] * n1 + n0 * diffN[2 * node1 + 1]);
526  FTensor::Tensor1<double *, 2> t_diff_psi_l(&diff_psi_l[0],
527  &diff_psi_l[p + 1], 1);
528 
529  for (int ll = 0; ll != nb_base_fun_on_face; ll++) {
530  t_face_edge_base[ee](i) =
531  beta_e * psi_l[ll] * t_opposite_node_diff(ee, i);
532  t_diff_face_edge_base[ee](i, j) =
533  beta_e * t_opposite_node_diff(ee, i) * t_diff_psi_l(j) +
534  psi_l[ll] * t_opposite_node_diff(ee, i) * t_diff_beta_e(j);
535  ++t_face_edge_base[ee];
536  ++t_diff_face_edge_base[ee];
537  ++t_diff_psi_l;
538  }
539  }
540  }
541 
543 }
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:509
static Index< 'p', 3 > p
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:516
static Index< 'i', 3 > i
static Index< 'j', 3 > j
#define CHKERR
Inline error check.
Definition: definitions.h:604
#define NBFACETRI_AINSWORTH_EDGE_HCURL(P)
const int N
Definition: speed_test.cpp:3

◆ Hcurl_Ainsworth_EdgeBaseFunctions_MBTET()

MoFEMErrorCode MoFEM::Hcurl_Ainsworth_EdgeBaseFunctions_MBTET ( int *  sense,
int *  p,
double N,
double diffN,
double edgeN[],
double diff_edgeN[],
int  nb_integration_pts,
PetscErrorCode(*)(int p, double s, double *diff_s, double *L, double *diffL, const int dim base_polynomials 
)

Edge based H-curl base functions on tetrahedral.

Function generates hierarchical base of h-curl comforting functions on tetrahedral edge. For more details see [3].

On each tetrahedral's edge we have P+1 functions. See NBEDGE_AINSWORTH_HCURL

Parameters
sensesense fo edge (i.e. unique orientation)
parray of oder for each edge
Narray shape functions evaluated at each integration point
diffNderivatives of shape functions
edgeNbase functions on edges
diff_edgeNderivatives of edge shape functions
nb_integration_ptsnumber of integration points
base_polynomialspolynomial base function (f.e. Legendre of Lobatto)
Returns
error code

Definition at line 16 of file Hcurl.cpp.

21  {
23 
24  const int edges_nodes[6][2] = {{0, 1}, {1, 2}, {2, 0},
25  {0, 3}, {1, 3}, {2, 3}};
26  int P[6];
27  for (int ee = 0; ee != 6; ee++)
28  P[ee] = NBEDGE_AINSWORTH_HCURL(p[ee]);
29 
32 
33  FTensor::Tensor1<double *, 3> t_node_diff_ksi[4] = {
34  FTensor::Tensor1<double *, 3>(&diffN[0], &diffN[1], &diffN[2]),
35  FTensor::Tensor1<double *, 3>(&diffN[3], &diffN[4], &diffN[5]),
36  FTensor::Tensor1<double *, 3>(&diffN[6], &diffN[7], &diffN[8]),
37  FTensor::Tensor1<double *, 3>(&diffN[9], &diffN[10], &diffN[11])};
38  double edge_diff_ksi[6][3];
39  FTensor::Tensor1<double *, 3> t_edge_diff_ksi[6] = {
40  FTensor::Tensor1<double *, 3>(&edge_diff_ksi[0][0], &edge_diff_ksi[0][1],
41  &edge_diff_ksi[0][2]),
42  FTensor::Tensor1<double *, 3>(&edge_diff_ksi[1][0], &edge_diff_ksi[1][1],
43  &edge_diff_ksi[1][2]),
44  FTensor::Tensor1<double *, 3>(&edge_diff_ksi[2][0], &edge_diff_ksi[2][1],
45  &edge_diff_ksi[2][2]),
46  FTensor::Tensor1<double *, 3>(&edge_diff_ksi[3][0], &edge_diff_ksi[3][1],
47  &edge_diff_ksi[3][2]),
48  FTensor::Tensor1<double *, 3>(&edge_diff_ksi[4][0], &edge_diff_ksi[4][1],
49  &edge_diff_ksi[4][2]),
50  FTensor::Tensor1<double *, 3>(&edge_diff_ksi[5][0], &edge_diff_ksi[5][1],
51  &edge_diff_ksi[5][2])};
52  for (int ee = 0; ee != 6; ee++) {
53  t_edge_diff_ksi[ee](i) = (t_node_diff_ksi[edges_nodes[ee][1]](i) -
54  t_node_diff_ksi[edges_nodes[ee][0]](i)) *
55  sense[ee];
56  }
57 
58  FTensor::Tensor1<double *, 3> t_edge_n[6] = {
59  FTensor::Tensor1<double *, 3>(&edge_n[0][0], &edge_n[0][1], &edge_n[0][2],
60  3),
61  FTensor::Tensor1<double *, 3>(&edge_n[1][0], &edge_n[1][1], &edge_n[1][2],
62  3),
63  FTensor::Tensor1<double *, 3>(&edge_n[2][0], &edge_n[2][1], &edge_n[2][2],
64  3),
65  FTensor::Tensor1<double *, 3>(&edge_n[3][0], &edge_n[3][1], &edge_n[3][2],
66  3),
67  FTensor::Tensor1<double *, 3>(&edge_n[4][0], &edge_n[4][1], &edge_n[4][2],
68  3),
69  FTensor::Tensor1<double *, 3>(&edge_n[5][0], &edge_n[5][1], &edge_n[5][2],
70  3)};
71  FTensor::Tensor2<double *, 3, 3> t_diff_edge_n[6] = {
73  &diff_edge_n[0][0], &diff_edge_n[0][3], &diff_edge_n[0][6],
74  &diff_edge_n[0][1], &diff_edge_n[0][4], &diff_edge_n[0][7],
75  &diff_edge_n[0][2], &diff_edge_n[0][5], &diff_edge_n[0][8], 9),
77  &diff_edge_n[1][0], &diff_edge_n[1][3], &diff_edge_n[1][6],
78  &diff_edge_n[1][1], &diff_edge_n[1][4], &diff_edge_n[1][7],
79  &diff_edge_n[1][2], &diff_edge_n[1][5], &diff_edge_n[1][8], 9),
81  &diff_edge_n[2][0], &diff_edge_n[2][3], &diff_edge_n[2][6],
82  &diff_edge_n[2][1], &diff_edge_n[2][4], &diff_edge_n[2][7],
83  &diff_edge_n[2][2], &diff_edge_n[2][5], &diff_edge_n[2][8], 9),
85  &diff_edge_n[3][0], &diff_edge_n[3][3], &diff_edge_n[3][6],
86  &diff_edge_n[3][1], &diff_edge_n[3][4], &diff_edge_n[3][7],
87  &diff_edge_n[3][2], &diff_edge_n[3][5], &diff_edge_n[3][8], 9),
89  &diff_edge_n[4][0], &diff_edge_n[4][3], &diff_edge_n[4][6],
90  &diff_edge_n[4][1], &diff_edge_n[4][4], &diff_edge_n[4][7],
91  &diff_edge_n[4][2], &diff_edge_n[4][5], &diff_edge_n[4][8], 9),
93  &diff_edge_n[5][0], &diff_edge_n[5][3], &diff_edge_n[5][6],
94  &diff_edge_n[5][1], &diff_edge_n[5][4], &diff_edge_n[5][7],
95  &diff_edge_n[5][2], &diff_edge_n[5][5], &diff_edge_n[5][8], 9)};
96  FTensor::Tensor1<double, 3> t_psi_e_0, t_psi_e_1;
97  FTensor::Tensor2<double, 3, 3> t_diff_psi_e_0, t_diff_psi_e_1;
98 
99  for (int ii = 0; ii != nb_integration_pts; ii++) {
100 
101  const int node_shift = ii * 4;
102  for (int ee = 0; ee != 6; ee++) {
103 
104  if (P[ee] == 0)
105  continue;
106 
107  t_psi_e_0(i) = (N[node_shift + edges_nodes[ee][1]] *
108  t_node_diff_ksi[edges_nodes[ee][0]](i) -
109  N[node_shift + edges_nodes[ee][0]] *
110  t_node_diff_ksi[edges_nodes[ee][1]](i)) *
111  sense[ee];
112  t_diff_psi_e_0(i, j) = (t_node_diff_ksi[edges_nodes[ee][1]](j) *
113  t_node_diff_ksi[edges_nodes[ee][0]](i) -
114  t_node_diff_ksi[edges_nodes[ee][0]](j) *
115  t_node_diff_ksi[edges_nodes[ee][1]](i)) *
116  sense[ee];
117 
118  t_psi_e_1(i) = N[node_shift + edges_nodes[ee][1]] *
119  t_node_diff_ksi[edges_nodes[ee][0]](i) +
120  N[node_shift + edges_nodes[ee][0]] *
121  t_node_diff_ksi[edges_nodes[ee][1]](i);
122  t_diff_psi_e_1(i, j) = t_node_diff_ksi[edges_nodes[ee][1]](j) *
123  t_node_diff_ksi[edges_nodes[ee][0]](i) +
124  t_node_diff_ksi[edges_nodes[ee][0]](j) *
125  t_node_diff_ksi[edges_nodes[ee][1]](i);
126 
127  (t_edge_n[ee])(i) = t_psi_e_0(i);
128  ++(t_edge_n[ee]);
129  (t_edge_n[ee])(i) = t_psi_e_1(i);
130  ++(t_edge_n[ee]);
131 
132  (t_diff_edge_n[ee])(i, j) = t_diff_psi_e_0(i, j);
133  ++(t_diff_edge_n[ee]);
134  (t_diff_edge_n[ee])(i, j) = t_diff_psi_e_1(i, j);
135  ++(t_diff_edge_n[ee]);
136 
137  if (p[ee] > 1) {
138 
139  const double ksi_0i = (N[node_shift + edges_nodes[ee][1]] -
140  N[node_shift + edges_nodes[ee][0]]) *
141  sense[ee];
142  double psi_l[p[ee] + 1], diff_psi_l[3 * p[ee] + 3];
143  CHKERR base_polynomials(p[ee], ksi_0i, &edge_diff_ksi[ee][0], psi_l,
144  diff_psi_l, 3);
145 
146  FTensor::Tensor1<double *, 3> t_diff_psi_l(
147  &diff_psi_l[0], &diff_psi_l[p[ee] + 1], &diff_psi_l[2 * p[ee] + 2],
148  1);
149 
150  for (int ll = 2; ll != P[ee]; ll++) {
151 
152  const double a = (double)(2 * ll + 1) / (double)(ll + 1);
153  const double b = (double)(ll) / (double)(ll + 1);
154 
155  (t_edge_n[ee])(i) = a * psi_l[ll - 1] * t_psi_e_1(i) -
156  b * psi_l[ll - 2] * t_psi_e_0(i);
157  ++(t_edge_n[ee]);
158 
159  (t_diff_edge_n[ee])(i, j) =
160  -b * (t_diff_psi_l(j) * t_psi_e_0(i) +
161  psi_l[ll - 2] * t_diff_psi_e_0(i, j));
162  ++t_diff_psi_l;
163  (t_diff_edge_n[ee])(i, j) +=
164  a * (t_diff_psi_l(j) * t_psi_e_1(i) +
165  psi_l[ll - 1] * t_diff_psi_e_1(i, j));
166  ++(t_diff_edge_n[ee]);
167  }
168  }
169  }
170  }
171 
173 }
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:509
static Index< 'p', 3 > p
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:516
static Index< 'i', 3 > i
#define NBEDGE_AINSWORTH_HCURL(P)
static Index< 'j', 3 > j
#define CHKERR
Inline error check.
Definition: definitions.h:604
const int N
Definition: speed_test.cpp:3

◆ Hcurl_Ainsworth_EdgeBaseFunctions_MBTET_ON_EDGE()

MoFEMErrorCode MoFEM::Hcurl_Ainsworth_EdgeBaseFunctions_MBTET_ON_EDGE ( int  sense,
int  p,
double N,
double diffN,
double edgeN,
double diff_edgeN,
int  nb_integration_pts,
PetscErrorCode(*)(int p, double s, double *diff_s, double *L, double *diffL, const int dim base_polynomials 
)

Edge based H-curl base functions on edge.

Function generates hierarchical base of h-curl comforting functions on tetrahedral edge. For more details see [3].

On each edge we have P+1 functions. See NBEDGE_AINSWORTH_HCURL

Parameters
sensesense fo edge (i.e. unique orientation)
parray of oder for each edge
Narray shape functions evaluated at each integration point
diffNderivatives of shape functions
edgeNbase functions on edges
diff_edgeNderivatives of edge shape functions
nb_integration_ptsnumber of integration points
base_polynomialspolynomial base function (f.e. Legendre of Lobatto)
Returns
error code

Definition at line 175 of file Hcurl.cpp.

180  {
182 
183  if (NBEDGE_AINSWORTH_HCURL(p) == 0)
185  if (diff_edge_n != NULL)
186  SETERRQ(PETSC_COMM_SELF, MOFEM_NOT_IMPLEMENTED,
187  "Calculation of derivatives not implemented");
188 
190  FTensor::Tensor1<double, 3> t_node_diff_ksi[2];
191  t_node_diff_ksi[0](0) = diffN[0];
192  t_node_diff_ksi[0](1) = 0;
193  t_node_diff_ksi[0](2) = 0;
194  t_node_diff_ksi[1](0) = diffN[1];
195  t_node_diff_ksi[1](1) = 0;
196  t_node_diff_ksi[1](2) = 0;
197 
199  &edge_n[0], &edge_n[1], &edge_n[2]);
200  FTensor::Tensor1<double, 3> t_psi_e_0, t_psi_e_1;
201 
202  for (int ii = 0; ii != nb_integration_pts; ii++) {
203 
204  const int node_shift = ii * 2;
205 
206  t_psi_e_0(i) = (N[node_shift + 1] * t_node_diff_ksi[0](i) -
207  N[node_shift + 0] * t_node_diff_ksi[1](i)) *
208  sense;
209  t_psi_e_1(i) = N[node_shift + 1] * t_node_diff_ksi[0](i) +
210  N[node_shift + 0] * t_node_diff_ksi[1](i);
211 
212  t_edge_n(i) = t_psi_e_0(i);
213  ++t_edge_n;
214 
215  t_edge_n(i) = t_psi_e_1(i);
216  ++t_edge_n;
217 
218  if (p > 1) {
219 
220  const double ksi_0i = (N[node_shift + 1] - N[node_shift + 0]) * sense;
221  double psi_l[p + 1];
222  CHKERR base_polynomials(p, ksi_0i, NULL, psi_l, NULL, 3);
223 
224  for (int ll = 2; ll != NBEDGE_AINSWORTH_HCURL(p); ll++) {
225  const double a = (double)(2 * ll + 1) / (double)(ll + 1);
226  const double b = (double)(ll) / (double)(ll + 1);
227  t_edge_n(i) =
228  a * psi_l[ll - 1] * t_psi_e_1(i) - b * psi_l[ll - 2] * t_psi_e_0(i);
229  ++t_edge_n;
230  }
231  }
232  }
233 
235 }
static Index< 'p', 3 > p
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:485
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:516
static Index< 'i', 3 > i
#define NBEDGE_AINSWORTH_HCURL(P)
#define CHKERR
Inline error check.
Definition: definitions.h:604
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:415
const int N
Definition: speed_test.cpp:3

◆ Hcurl_Ainsworth_EdgeBaseFunctions_MBTET_ON_FACE()

MoFEMErrorCode MoFEM::Hcurl_Ainsworth_EdgeBaseFunctions_MBTET_ON_FACE ( int *  sense,
int *  p,
double N,
double diffN,
double edgeN[],
double diff_edgeN[],
int  nb_integration_pts,
PetscErrorCode(*)(int p, double s, double *diff_s, double *L, double *diffL, const int dim base_polynomials 
)

Edge based H-curl base functions on face.

Function generates hierarchical base of h-curl comforting functions on tetrahedral edge. For more details see [3].

On each face's edge we have P+1 functions. See NBEDGE_AINSWORTH_HCURL

Parameters
sensesense fo edge (i.e. unique orientation)
parray of oder for each edge
Narray shape functions evaluated at each integration point
diffNderivatives of shape functions
edgeNbase functions on edges
diff_edgeNderivatives of edge shape functions
nb_integration_ptsnumber of integration points
base_polynomialspolynomial base function (f.e. Legendre of Lobatto)
Returns
error code

Definition at line 237 of file Hcurl.cpp.

242  {
243 
245 
246  // TODO This is not by atom tests properly
247 
248  const int edges_nodes[3][2] = {{0, 1}, {1, 2}, {2, 0}};
249  int P[3];
250  for (int ee = 0; ee < 3; ee++)
251  P[ee] = NBEDGE_AINSWORTH_HCURL(p[ee]);
252 
255 
256  FTensor::Tensor1<double, 3> t_node_diff_ksi[3] = {
257  FTensor::Tensor1<double, 3>(diffN[0], diffN[1], 0.),
258  FTensor::Tensor1<double, 3>(diffN[2], diffN[3], 0.),
259  FTensor::Tensor1<double, 3>(diffN[4], diffN[5], 0.),
260  };
261  FTensor::Tensor1<double, 2> t_2d_diff_ksi[3] = {
262  FTensor::Tensor1<double, 2>(diffN[0], diffN[1]),
263  FTensor::Tensor1<double, 2>(diffN[2], diffN[3]),
264  FTensor::Tensor1<double, 2>(diffN[4], diffN[5])};
265 
266  FTensor::Tensor1<double *, 3> t_edge_n[3] = {
267  FTensor::Tensor1<double *, 3>(&edge_n[0][0], &edge_n[0][1], &edge_n[0][2],
268  3),
269  FTensor::Tensor1<double *, 3>(&edge_n[1][0], &edge_n[1][1], &edge_n[1][2],
270  3),
271  FTensor::Tensor1<double *, 3>(&edge_n[2][0], &edge_n[2][1], &edge_n[2][2],
272  3)};
273  FTensor::Tensor2<FTensor::PackPtr<double *, 6>, 3, 2> t_diff_edge_n[3] = {
275  &diff_edge_n[0][HVEC0_0], &diff_edge_n[0][HVEC0_1],
276  &diff_edge_n[0][HVEC1_0], &diff_edge_n[0][HVEC1_1],
277  &diff_edge_n[0][HVEC2_0], &diff_edge_n[0][HVEC2_1]),
279  &diff_edge_n[1][HVEC0_0], &diff_edge_n[1][HVEC0_1],
280  &diff_edge_n[1][HVEC1_0], &diff_edge_n[1][HVEC1_1],
281  &diff_edge_n[1][HVEC2_0], &diff_edge_n[1][HVEC2_1]),
283  &diff_edge_n[2][HVEC0_0], &diff_edge_n[2][HVEC0_1],
284  &diff_edge_n[2][HVEC1_0], &diff_edge_n[2][HVEC1_1],
285  &diff_edge_n[2][HVEC2_0], &diff_edge_n[2][HVEC2_1])};
286 
287  FTensor::Tensor1<double, 3> t_psi_e_0, t_psi_e_1;
288  FTensor::Tensor2<double, 3, 2> t_diff_psi_e_0, t_diff_psi_e_1;
289 
290  for (int ee = 0; ee != 3; ee++) {
291 
292  if (P[ee] == 0)
293  continue;
294  const int node0 = edges_nodes[ee][0];
295  const int node1 = edges_nodes[ee][1];
296  const int sense_edge = sense[ee];
297 
298  t_diff_psi_e_0(i, j) =
299  (t_node_diff_ksi[node0](i) * t_2d_diff_ksi[node1](j) -
300  t_node_diff_ksi[node1](i) * t_2d_diff_ksi[node0](j)) *
301  sense_edge;
302  t_diff_psi_e_1(i, j) = t_node_diff_ksi[node0](i) * t_2d_diff_ksi[node1](j) +
303  t_node_diff_ksi[node1](i) * t_2d_diff_ksi[node0](j);
304 
305  for (int ii = 0; ii != nb_integration_pts; ii++) {
306 
307  const int node_shift = ii * 3;
308  const double n0 = N[node_shift + node0];
309  const double n1 = N[node_shift + node1];
310 
311  t_psi_e_0(i) =
312  (n1 * t_node_diff_ksi[node0](i) - n0 * t_node_diff_ksi[node1](i)) *
313  sense_edge;
314  t_psi_e_1(i) =
315  n1 * t_node_diff_ksi[node0](i) + n0 * t_node_diff_ksi[node1](i);
316 
317  (t_edge_n[ee])(i) = t_psi_e_0(i);
318  (t_diff_edge_n[ee])(i, j) = t_diff_psi_e_0(i, j);
319  ++(t_edge_n[ee]);
320  ++(t_diff_edge_n[ee]);
321  (t_edge_n[ee])(i) = t_psi_e_1(i);
322  (t_diff_edge_n[ee])(i, j) = t_diff_psi_e_1(i, j);
323  ++(t_edge_n[ee]);
324  ++(t_diff_edge_n[ee]);
325 
326  if (p[ee] > 1) {
327  const double ksi_0i = (n1 - n0) * sense_edge;
328  double diff_ksi_0i[] = {
329  ((t_2d_diff_ksi[node1])(0) - (t_2d_diff_ksi[node0])(0)) *
330  sense_edge,
331  ((t_2d_diff_ksi[node1])(1) - (t_2d_diff_ksi[node0])(1)) *
332  sense_edge};
333 
334  double psi_l[p[ee] + 1], diff_psi_l[2 * p[ee] + 2];
335  CHKERR
336  base_polynomials(p[ee], ksi_0i, diff_ksi_0i, psi_l, diff_psi_l, 2);
337 
338  FTensor::Tensor1<double *, 2> t_diff_psi_ll_m1(
339  &diff_psi_l[0 + 2 - 1], &diff_psi_l[p[ee] + 1 + 2 - 1], 1);
340  FTensor::Tensor1<double *, 2> t_diff_psi_ll_m2(
341  &diff_psi_l[0 + 2 - 2], &diff_psi_l[p[ee] + 1 + 2 - 2], 1);
342  for (int ll = 2; ll != P[ee]; ll++) {
343  const double a = (double)(2 * ll + 1) / (double)(ll + 1);
344  const double b = (double)(ll) / (double)(ll + 1);
345  (t_edge_n[ee])(i) = a * psi_l[ll - 1] * t_psi_e_1(i) -
346  b * psi_l[ll - 2] * t_psi_e_0(i);
347  (t_diff_edge_n[ee])(i, j) = a * t_psi_e_1(i) * t_diff_psi_ll_m1(j) +
348  a * psi_l[ll - 1] * t_diff_psi_e_1(i, j) -
349  b * t_psi_e_0(i) * t_diff_psi_ll_m2(j) -
350  b * psi_l[ll - 2] * t_diff_psi_e_0(i, j);
351  ++(t_edge_n[ee]);
352  ++(t_diff_edge_n[ee]);
353  ++t_diff_psi_ll_m1;
354  ++t_diff_psi_ll_m2;
355  }
356  }
357  }
358  }
359 
361 }
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:509
static Index< 'p', 3 > p
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:516
static Index< 'i', 3 > i
#define NBEDGE_AINSWORTH_HCURL(P)
static Index< 'j', 3 > j
#define CHKERR
Inline error check.
Definition: definitions.h:604
const int N
Definition: speed_test.cpp:3

◆ Hcurl_Ainsworth_FaceFunctions_MBTET()

MoFEMErrorCode MoFEM::Hcurl_Ainsworth_FaceFunctions_MBTET ( int *  face_nodes,
int *  p,
double N,
double diffN,
double phi_f[4],
double diff_phi_f[4],
int  nb_integration_pts,
PetscErrorCode(*)(int p, double s, double *diff_s, double *L, double *diffL, const int dim base_polynomials 
)

Face H-curl functions.

Face H-curl functions are set of Eddge-Based Face functions (Hcurl_Ainsworth_EdgeBasedFaceFunctions_MBTET) and Bubble-Face functions (Hcurl_Ainsworth_BubbleFaceFunctions_MBTET).

See NBVOLUMETET_AINSWORTH_FACE_HCURL

Parameters
face_nodesarray [4*3] of local indices of face nodes
papproximation order
Nnodal shape functions
diffNderivatives of nodal shape functions
phi_f[4]calculated shape functions for each face
diff_phi_v[4]derivatives of shape functions for each face
nb_integration_ptsnumber of shape functions
base_polynomialspolynomial base function (f.e. Legendre of Lobatto)
Returns
error code

Definition at line 1052 of file Hcurl.cpp.

1057  {
1058 
1060 
1061  try {
1062 
1063  MatrixDouble base_face_edge_functions[4];
1064  MatrixDouble diff_base_face_edge_functions[4];
1065  double *phi_f_e[4][3];
1066  double *diff_phi_f_e[4][3];
1067  for (int ff = 0; ff != 4; ff++) {
1068  if (NBFACETRI_AINSWORTH_EDGE_HCURL(p[ff]) == 0) {
1069  for (int ee = 0; ee != 3; ee++) {
1070  phi_f_e[ff][ee] = NULL;
1071  diff_phi_f_e[ff][ee] = NULL;
1072  }
1073  } else {
1074  base_face_edge_functions[ff].resize(
1075  3, 3 * NBFACETRI_AINSWORTH_EDGE_HCURL(p[ff]) * nb_integration_pts);
1076  diff_base_face_edge_functions[ff].resize(
1077  3, 9 * NBFACETRI_AINSWORTH_EDGE_HCURL(p[ff]) * nb_integration_pts);
1078  // base_face_edge_functions[ff].clear();
1079  // diff_base_face_edge_functions[ff].clear();
1080  for (int ee = 0; ee != 3; ee++) {
1081  phi_f_e[ff][ee] = &base_face_edge_functions[ff](ee, 0);
1082  diff_phi_f_e[ff][ee] = &diff_base_face_edge_functions[ff](ee, 0);
1083  }
1084  }
1085  }
1087  face_nodes, p, N, diffN, phi_f_e, diff_phi_f_e, nb_integration_pts,
1088  base_polynomials);
1089 
1090  VectorDouble base_face_bubble_functions[4];
1091  VectorDouble diff_base_face_bubble_functions[4];
1092  double *phi_f_f[4];
1093  double *diff_phi_f_f[4];
1094  for (int ff = 0; ff != 4; ff++) {
1095  int nb_dofs = NBFACETRI_AINSWORTH_FACE_HCURL(p[ff]);
1096  if (nb_dofs == 0) {
1097  phi_f_f[ff] = NULL;
1098  diff_phi_f_f[ff] = NULL;
1099  } else {
1100  base_face_bubble_functions[ff].resize(3 * nb_dofs * nb_integration_pts,
1101  false);
1102  diff_base_face_bubble_functions[ff].resize(
1103  9 * nb_dofs * nb_integration_pts, false);
1104  phi_f_f[ff] = &*base_face_bubble_functions[ff].data().begin();
1105  diff_phi_f_f[ff] = &*diff_base_face_bubble_functions[ff].data().begin();
1106  }
1107  }
1109  face_nodes, p, N, diffN, phi_f_f, diff_phi_f_f, nb_integration_pts,
1110  base_polynomials);
1111 
1114 
1115  for (int ff = 0; ff != 4; ff++) {
1116 
1117  if (NBFACETRI_AINSWORTH_EDGE_HCURL(p[ff]) == 0)
1118  continue;
1119 
1120  FTensor::Tensor1<double *, 3> t_face_edge_base[] = {
1121  FTensor::Tensor1<double *, 3>(&phi_f_e[ff][0][0], &phi_f_e[ff][0][1],
1122  &phi_f_e[ff][0][2], 3),
1123  FTensor::Tensor1<double *, 3>(&phi_f_e[ff][1][0], &phi_f_e[ff][1][1],
1124  &phi_f_e[ff][1][2], 3),
1125  FTensor::Tensor1<double *, 3>(&phi_f_e[ff][2][0], &phi_f_e[ff][2][1],
1126  &phi_f_e[ff][2][2], 3)};
1127  FTensor::Tensor2<double *, 3, 3> t_diff_face_edge_base[] = {
1129  &diff_phi_f_e[ff][0][0], &diff_phi_f_e[ff][0][3],
1130  &diff_phi_f_e[ff][0][6], &diff_phi_f_e[ff][0][1],
1131  &diff_phi_f_e[ff][0][4], &diff_phi_f_e[ff][0][7],
1132  &diff_phi_f_e[ff][0][2], &diff_phi_f_e[ff][0][5],
1133  &diff_phi_f_e[ff][0][8], 9),
1135  &diff_phi_f_e[ff][1][0], &diff_phi_f_e[ff][1][3],
1136