MoFEM Namespace Reference

implementation of Data Operators for Forces and Sources More...

Namespaces
	DemkowiczHexAndQuad
	Exceptions
	Exceptions and handling errors data structures.
	IntRules
	LogKeywords
	Types
	Types.

Classes
struct	SmartPetscObj
	intrusive_ptr for managing petsc objects More...
struct	KeyFromKey
struct	LtBit
struct	EqBit
struct	HashBit
struct	GetFTensor0FromVecImpl
struct	GetFTensor1FromMatImpl
struct	GetFTensor1FromMatImpl< 3, S, T, ublas::row_major, A >
struct	GetFTensor1FromMatImpl< 2, S, T, ublas::row_major, A >
struct	GetFTensor1FromMatImpl< 1, S, T, ublas::row_major, A >
struct	GetFTensor2SymmetricFromMatImpl
struct	GetFTensor2SymmetricFromMatImpl< 3, S, T, L, A >
struct	GetFTensor2SymmetricFromMatImpl< 2, S, T, L, A >
struct	GetFTensor4DdgFromMatImpl
struct	GetFTensor4DdgFromMatImpl< 1, 1, S, T, ublas::row_major, A >
struct	GetFTensor4DdgFromMatImpl< 2, 2, S, T, ublas::row_major, A >
struct	GetFTensor4DdgFromMatImpl< 3, 3, S, T, ublas::row_major, A >
struct	GetFTensor3DgFromMatImpl
struct	GetFTensor3DgFromMatImpl< 1, 1, S, T, ublas::row_major, A >
struct	GetFTensor3DgFromMatImpl< 2, 2, S, T, ublas::row_major, A >
struct	GetFTensor3DgFromMatImpl< 3, 3, S, T, ublas::row_major, A >
struct	GetFTensor4FromMatImpl
struct	GetFTensor4FromMatImpl< 1, 1, 1, 1, S, T, ublas::row_major, A >
struct	GetFTensor4FromMatImpl< 2, 2, 2, 2, S, T, ublas::row_major, A >
struct	GetFTensor4FromMatImpl< 3, 3, 3, 3, S, T, ublas::row_major, A >
struct	GetFTensor3FromMatImpl
struct	GetFTensor3FromMatImpl< 1, 1, 1, S, T, ublas::row_major, A >
struct	GetFTensor3FromMatImpl< 2, 2, 2, S, T, ublas::row_major, A >
struct	GetFTensor3FromMatImpl< 3, 2, 2, S, T, ublas::row_major, A >
struct	GetFTensor3FromMatImpl< 3, 3, 3, S, T, ublas::row_major, A >
struct	GetFTensor2FromArrayImpl
	Get FTensor2 from array. More...
struct	GetFTensor2FromArrayImpl< 2, 2, S, T, L, A >
struct	GetFTensor2FromArrayImpl< 3, 3, S, T, L, A >
struct	RefEntExtractor
	Extract entity handle form multi-index container. More...
struct	Modify_change_nothing
	Do nothing, used to rebuild database. More...
struct	TempMeshset
struct	BaseFunctionUnknownInterface
struct	BaseFunctionCtx
	Base class used to exchange data between element data structures and class calculating base functions. More...
struct	BaseFunction
	Base class if inherited used to calculate base functions. More...
struct	BernsteinBezier
	Evaluating BB polynomial. More...
struct	EdgePolynomialBase
	Calculate base functions on tetrahedral. More...
struct	EntPolynomialBaseCtx
	Class used to pass element data to calculate base functions on tet,triangle,edge. More...
struct	FatPrismPolynomialBaseCtx
	Class used to pass element data to calculate base functions on fat prism. More...
struct	FatPrismPolynomialBase
	Calculate base functions on tetrahedralFIXME: Need moab and mofem finite element structure to work (that not perfect) More...
struct	FlatPrismPolynomialBaseCtx
	Class used to pass element data to calculate base functions on flat prism. More...
struct	FlatPrismPolynomialBase
	Calculate base functions on tetrahedralFIXME: Need moab and mofem finite element structure to work (that not perfect) More...
struct	HexPolynomialBase
	Calculate base functions on tetrahedral. More...
struct	JacobiPolynomialCtx
	Class used to give arguments to Legendre base functions. More...
struct	JacobiPolynomial
	Calculating Legendre base functions. More...
struct	IntegratedJacobiPolynomialCtx
struct	IntegratedJacobiPolynomial
struct	LegendrePolynomialCtx
	Class used to give arguments to Legendre base functions. More...
struct	LegendrePolynomial
	Calculating Legendre base functions. More...
struct	LobattoPolynomialCtx
	Class used to give arguments to Lobatto base functions. More...
struct	LobattoPolynomial
	Calculating Lobatto base functions. More...
struct	KernelLobattoPolynomialCtx
	Class used to give arguments to Kernel Lobatto base functions. More...
struct	KernelLobattoPolynomial
	Calculating Lobatto base functions. More...
struct	Projection10NodeCoordsOnField
	Projection of edge entities with one mid-node on hierarchical basis. More...
struct	ProjectionFieldOn10NodeTet
struct	QuadPolynomialBase
	Calculate base functions on triangle. More...
struct	TetPolynomialBase
	Calculate base functions on tetrahedral. More...
struct	TriPolynomialBase
	Calculate base functions on triangle. More...
struct	OpBaseDerivativesBase
struct	OpBaseDerivativesMass
struct	OpBaseDerivativesMass< 1 >
struct	OpBaseDerivativesNext
struct	OpBaseDerivativesNext< 1 >
struct	OpGradGradImpl
struct	OpGradGradImpl< 1, 1, SPACE_DIM, GAUSS, OpBase >
struct	OpGradGradImpl< 1, FIELD_DIM, SPACE_DIM, GAUSS, OpBase >
struct	OpMassImpl
struct	OpMassImpl< 1, 1, GAUSS, OpBase >
struct	OpMassImpl< 1, FIELD_DIM, GAUSS, OpBase >
struct	OpMassImpl< BASE_DIM, BASE_DIM, GAUSS, OpBase >
struct	OpMassImpl< 3, 9, GAUSS, OpBase >
struct	OpGradSymTensorGradImpl
struct	OpGradSymTensorGradImpl< 1, SPACE_DIM, SPACE_DIM, S, GAUSS, OpBase >
struct	OpGradTensorGradImpl
struct	OpGradTensorGradImpl< 1, SPACE_DIM, SPACE_DIM, S, GAUSS, OpBase >
struct	OpGradGradSymTensorGradGradImpl
struct	OpGradGradSymTensorGradGradImpl< 1, 1, SPACE_DIM, S, GAUSS, OpBase >
struct	OpMixDivTimesScalarImpl
struct	OpMixDivTimesScalarImpl< SPACE_DIM, GAUSS, OpBase >
struct	OpMixDivTimesVecImpl
struct	OpMixDivTimesVecImpl< SPACE_DIM, GAUSS, OpBase >
struct	OpMixScalarTimesDivImpl
struct	OpMixScalarTimesDivImpl< SPACE_DIM, GAUSS, OpBase, COORDINATE_SYSTEM >
struct	OpMixVectorTimesGradImpl
struct	OpMixVectorTimesGradImpl< 3, SPACE_DIM, SPACE_DIM, GAUSS, OpBase >
struct	OpMixVectorTimesGradImpl< 1, SPACE_DIM, SPACE_DIM, GAUSS, OpBase >
struct	OpMixTensorTimesGradImpl
struct	OpMixTensorTimesGradImpl< SPACE_DIM, GAUSS, OpBase >
struct	OpConvectiveTermLhsDuImpl
struct	OpConvectiveTermLhsDyImpl
struct	OpConvectiveTermLhsDuImpl< 1, 1, SPACE_DIM, GAUSS, OpBase >
struct	OpConvectiveTermLhsDyImpl< 1, 1, SPACE_DIM, GAUSS, OpBase >
struct	OpConvectiveTermLhsDuImpl< 1, FIELD_DIM, SPACE_DIM, GAUSS, OpBase >
struct	OpConvectiveTermLhsDyImpl< 1, FIELD_DIM, SPACE_DIM, GAUSS, OpBase >
struct	VolumeElementForcesAndSourcesCoreOnContactPrismSideSwitch
	Volume side finite element with switches. More...
struct	ContactPrismElementForcesAndSourcesCore
	ContactPrism finite element. More...
struct	DataOperator
	base operator to do operations at Gauss Pt. level More...
struct	OpSetInvJacH1
	Transform local reference derivatives of shape function to global derivatives. More...
struct	OpSetInvJacHdivAndHcurl
	brief Transform local reference derivatives of shape function to global derivatives More...
struct	OpSetContravariantPiolaTransform
	apply contravariant (Piola) transfer to Hdiv space More...
struct	OpSetCovariantPiolaTransform
	apply covariant transfer to Hcurl space More...
struct	OpGetDataAndGradient
	Get field values and gradients at Gauss points. More...
struct	OpGetCoordsAndNormalsOnPrism
	calculate normals at Gauss points of triangle element More...
struct	OpSetContravariantPiolaTransformOnFace
	transform Hdiv base fluxes from reference element to physical triangle More...
struct	OpSetCovariantPiolaTransformOnFace
	transform Hcurl base fluxes from reference element to physical triangle More...
struct	OpGetHOTangentOnEdge
	Calculate tangent vector on edge form HO geometry approximation. More...
struct	OpSetCovariantPiolaTransformOnEdge
	transform Hcurl base fluxes from reference element to physical edge More...
struct	FaceElementForcesAndSourcesCoreOnSideSwitch
	Face side finite element with switches. More...
struct	EdgeElementForcesAndSourcesCoreBase
	Edge finite element. More...
struct	EdgeElementForcesAndSourcesCoreSwitch
	Edge finite element. More...
struct	EntitiesFieldData
	data structure for finite element entity More...
struct	DerivedEntitiesFieldData
	this class derive data form other data structure More...
struct	VolumeElementForcesAndSourcesCoreOnSideSwitch
	Volume side finite element with switches. More...
struct	FaceElementForcesAndSourcesCoreBase
	Face finite element. More...
struct	FaceElementForcesAndSourcesCoreSwitch
	Face finite element switched. More...
struct	FaceElementForcesAndSourcesCoreOnChildParentBase
	Base face element used to integrate on skeleton. More...
struct	FaceElementForcesAndSourcesCoreOnChildParentSwitch
	Face side finite element with switches. More...
struct	FaceElementForcesAndSourcesCoreOnSideBase
	Base face element used to integrate on skeleton. More...
struct	FatPrismElementForcesAndSourcesCore
	FatPrism finite element. More...
struct	FlatPrismElementForcesAndSourcesCore
	FlatPrism finite element. More...
struct	ForcesAndSourcesCore
	structure to get information form mofem into EntitiesFieldData More...
struct	EssentialBcStorage
	[Storage and set boundary conditions] More...
struct	OpSetBc
	Set indices on entities on finite element. More...
struct	OpUnSetBc
struct	OpBaseImpl
struct	FormsIntegrators
	Integrator forms. More...
struct	OpBaseImpl< PETSC, EleOp >
struct	OpCalculateHOJacVolume
	Calculate jacobian on Hex or other volume which is not simplex. More...
struct	OpCalculateHOCoords
	Calculate HO coordinates at gauss points. More...
struct	OpSetHOInvJacToScalarBases
	Set inverse jacobian to base functions. More...
struct	OpSetHOInvJacVectorBase
	transform local reference derivatives of shape function to global derivatives if higher order geometry is given More...
struct	OpSetHOWeightsOnFace
	Modify integration weights on face to take in account higher-order geometry. More...
struct	OpSetHOWeights
	Set inverse jacobian to base functions. More...
struct	OpSetHOContravariantPiolaTransform
	Apply contravariant (Piola) transfer to Hdiv space for HO geometr. More...
struct	OpSetHOCovariantPiolaTransform
	Apply covariant (Piola) transfer to Hcurl space for HO geometry. More...
struct	OpCalculateHOJacForFaceImpl
	Calculate jacobian for face element. More...
struct	OpCalculateHOJacForFaceImpl< 2 >
struct	OpCalculateHOJacForFaceImpl< 3 >
struct	OpGetHONormalsOnFace
	Calculate normals at Gauss points of triangle element. More...
struct	OpHOSetContravariantPiolaTransformOnFace3D
	transform Hdiv base fluxes from reference element to physical triangle More...
struct	OpHOSetContravariantPiolaTransformOnEdge3D
	transform Hcurl base fluxes from reference element to physical edge More...
struct	OpHOSetCovariantPiolaTransformOnFace3D
	transform Hcurl base fluxes from reference element to physical triangle More...
struct	OpGetHOTangentsOnEdge
	Calculate tangent vector on edge form HO geometry approximation. More...
struct	OpScaleBaseBySpaceInverseOfMeasure
	Scale base functions by inverses of measure of element. More...
struct	OpSourceImpl
struct	OpSourceImpl< 1, 1, GAUSS, OpBase >
	Integrate source. More...
struct	OpSourceImpl< 1, FIELD_DIM, GAUSS, OpBase >
struct	OpSourceImpl< BASE_DIM, BASE_DIM, GAUSS, OpBase >
struct	OpBaseTimesScalarFieldImpl
struct	OpBaseTimesScalarFieldImpl< 1, S, GAUSS, OpBase >
struct	OpBaseTimesVectorImpl
struct	OpBaseTimesVectorImpl< 1, FIELD_DIM, S, GAUSS, OpBase >
struct	OpBaseTimesVectorImpl< BASE_DIM, BASE_DIM, S, GAUSS, OpBase >
struct	OpGradTimesTensorImpl
struct	OpGradTimesTensorImpl< 1, 1, SPACE_DIM, S, GAUSS, OpBase >
struct	OpGradTimesTensorImpl< 1, SPACE_DIM, SPACE_DIM, S, GAUSS, OpBase >
struct	OpGradTimesSymTensorImpl
struct	OpGradTimesSymTensorImpl< 1, SPACE_DIM, SPACE_DIM, S, GAUSS, OpBase >
struct	OpMixDivTimesUImpl
struct	OpMixDivTimesUImpl< 3, FIELD_DIM, SPACE_DIM, GAUSS, OpBase >
struct	OpMixDivTimesUImpl< 3, 1, SPACE_DIM, GAUSS, OpBase >
struct	OpMixDivTimesUImpl< 1, FIELD_DIM, FIELD_DIM, GAUSS, OpBase >
struct	OpMixVecTimesDivLambdaImpl
struct	OpMixVecTimesDivLambdaImpl< SPACE_DIM, GAUSS, OpBase >
struct	OpMixTensorTimesGradUImpl
struct	OpMixTensorTimesGradUImpl< SPACE_DIM, GAUSS, OpBase >
struct	OpNormalMixVecTimesScalarImpl
	Multiply vactor times normal on the face times scalar function. More...
struct	OpNormalMixVecTimesScalarImpl< 3, GAUSS, OpBase >
struct	OpNormalMixVecTimesScalarImpl< 2, GAUSS, OpBase >
struct	OpConvectiveTermRhsImpl
struct	OpConvectiveTermRhsImpl< 1, 1, SPACE_DIM, GAUSS, OpBase >
struct	OpConvectiveTermRhsImpl< 1, FIELD_DIM, SPACE_DIM, GAUSS, OpBase >
struct	OpRunParent
	Operator to execute finite element instance on parent element. This operator is typically used to project field from parent to child, or vice versa. It enables to evaluate filed data of parent entity on chile entity integration points. More...
struct	OpAddParentEntData
	Operator to project base functions from parent entity. More...
struct	OpCalculateScalarFieldValues_General
	Scalar field values at integration points. More...
struct	OpCalculateScalarFieldValues
	Get value at integration points for scalar field. More...
struct	OpCalculateScalarFieldValuesFromPetscVecImpl
	Get rate of scalar field at integration points. More...
struct	OpCalculateVectorFieldValues_General
	Calculate field values for tenor field rank 1, i.e. vector field. More...
struct	OpCalculateVectorFieldValues_General< Tensor_Dim, double, ublas::row_major, DoubleAllocator >
	Calculate field values (template specialization) for tensor field rank 1, i.e. vector field. More...
struct	OpCalculateVectorFieldValues
	Get values at integration pts for tensor filed rank 1, i.e. vector field. More...
struct	OpCalculateDivergenceVectorFieldValues
	Calculate field values (template specialization) for tensor field rank 1, i.e. vector field. More...
struct	OpCalculateVectorFieldValuesFromPetscVecImpl
	Approximate field valuse for given petsc vector. More...
struct	OpCalculateTensor2FieldValues_General
	Calculate field values for tenor field rank 2. More...
struct	OpCalculateTensor2FieldValues_General< Tensor_Dim0, Tensor_Dim1, double, ublas::row_major, DoubleAllocator >
struct	OpCalculateTensor2FieldValues
	Get values at integration pts for tensor filed rank 2, i.e. matrix field. More...
struct	OpCalculateTensor2FieldValuesDot
	Get time direvarive values at integration pts for tensor filed rank 2, i.e. matrix field. More...
struct	OpCalculateTensor2SymmetricFieldValues
	Calculate symmetric tensor field values at integration pts. More...
struct	OpCalculateTensor2SymmetricFieldValuesDot
	Calculate symmetric tensor field rates ant integratio pts. More...
struct	OpCalculateScalarFieldGradient_General
	Evaluate field gradient values for scalar field, i.e. gradient is tensor rank 1 (vector) More...
struct	OpCalculateScalarFieldGradient_General< Tensor_Dim, double, ublas::row_major, DoubleAllocator >
	Evaluate field gradient values for scalar field, i.e. gradient is tensor rank 1 (vector), specialization. More...
struct	OpCalculateScalarFieldGradient
	Get field gradients at integration pts for scalar filed rank 0, i.e. vector field. More...
struct	OpCalculateScalarFieldHessian
	Evaluate field gradient values for scalar field, i.e. gradient is tensor rank 1 (vector), specialization. More...
struct	OpCalculateVectorFieldGradient_General
	Evaluate field gradient values for vector field, i.e. gradient is tensor rank 2. More...
struct	OpCalculateVectorFieldGradient_General< Tensor_Dim0, Tensor_Dim1, double, ublas::row_major, DoubleAllocator >
struct	OpCalculateVectorFieldGradient
	Get field gradients at integration pts for scalar filed rank 0, i.e. vector field. More...
struct	OpCalculateVectorFieldGradientDot
	Get field gradients time derivative at integration pts for scalar filed rank 0, i.e. vector field. More...
struct	OpCalculateTensor2SymmetricFieldGradient_General
	Evaluate field gradient values for symmetric 2nd order tensor field, i.e. gradient is tensor rank 3. More...
struct	OpCalculateTensor2SymmetricFieldGradient_General< Tensor_Dim0, Tensor_Dim1, double, ublas::row_major, DoubleAllocator >
struct	OpCalculateTensor2SymmetricFieldGradient
	Get field gradients at integration pts for symmetric tensorial field rank 2. More...
struct	OpCalculateVectorFieldHessian
struct	OpTensorTimesSymmetricTensor
	Calculate \( \pmb\sigma_{ij} = \mathbf{D}_{ijkl} \pmb\varepsilon_{kl} \). More...
struct	OpSymmetrizeTensor
struct	OpScaleMatrix
struct	OpCalculateHVecVectorField_General
	Get vector field for H-div approximation. More...
struct	OpCalculateHVecVectorField_General< Tensor_Dim, double, ublas::row_major, DoubleAllocator >
	Get vector field for H-div approximation. More...
struct	OpCalculateHVecVectorField
	Get vector field for H-div approximation. More...
struct	OpCalculateHVecVectorFieldDot
	Get vector field for H-div approximation. More...
struct	OpCalculateHdivVectorDivergence
	Calculate divergence of vector field. More...
struct	OpCalculateHVecVectorGradient
	Calculate gradient of vector field. More...
struct	OpCalculateHdivVectorDivergenceDot
	Calculate divergence of vector field dot. More...
struct	OpCalculateHcurlVectorCurl
	Calculate curl of vector field. More...
struct	OpCalculateHVecTensorField
	Calculate tenor field using vectorial base, i.e. Hdiv/Hcurl. More...
struct	OpCalculateHTensorTensorField
	Calculate tenor field using vectorial base, i.e. Hdiv/Hcurl. More...
struct	OpCalculateHVecTensorDivergence
	Calculate divergence of tonsorial field using vectorial base. More...
struct	OpCalculateHVecTensorTrace
	Calculate trace of vector (Hdiv/Hcurl) space. More...
struct	OpCalculateHVecTensorTrace< 3, FaceElementForcesAndSourcesCore::UserDataOperator >
struct	OpSetInvJacSpaceForFaceImpl
	Transform local reference derivatives of shape functions to global derivatives. More...
struct	OpSetInvJacSpaceForFaceImpl< 2, 1 >
struct	OpSetInvJacSpaceForFaceImpl< 3, 1 >
struct	OpSetInvJacSpaceForFaceImpl< 2, 2 >
struct	OpSetInvJacH1ForFace
struct	OpSetInvJacL2ForFace
struct	OpSetInvJacH1ForFaceEmbeddedIn3DSpace
struct	OpSetInvJacL2ForFaceEmbeddedIn3DSpace
struct	OpSetInvJacHcurlFaceImpl
	Transform local reference derivatives of shape function to global derivatives for face. More...
struct	OpSetInvJacHcurlFaceImpl< 2 >
struct	OpSetInvJacHcurlFaceImpl< 3 >
struct	OpMakeHdivFromHcurl
	Make Hdiv space from Hcurl space in 2d. More...
struct	OpSetContravariantPiolaTransformOnFace2DImpl
	Apply contravariant (Piola) transfer to Hdiv space on face. More...
struct	OpSetContravariantPiolaTransformOnFace2DImpl< 2 >
struct	OpSetContravariantPiolaTransformOnFace2DImpl< 3 >
struct	OpSetContravariantPiolaTransformOnEdge2D
struct	OpMultiplyDeterminantOfJacobianAndWeightsForFatPrisms
	Operator for fat prism element updating integration weights in the volume. More...
struct	OpCalculateInvJacForFatPrism
	Calculate inverse of jacobian for face element. More...
struct	OpSetInvJacH1ForFatPrism
	Transform local reference derivatives of shape functions to global derivatives. More...
struct	OpCalculateInvJacForFlatPrism
	Calculate inverse of jacobian for face element. More...
struct	OpSetInvJacH1ForFlatPrism
	Transform local reference derivatives of shape functions to global derivatives. More...
struct	OpInvertMatrix
struct	VertexElementForcesAndSourcesCore
	Vertex finite element. More...
struct	VolumeElementForcesAndSourcesCoreBase
	Volume finite element base. More...
struct	VolumeElementForcesAndSourcesCoreSwitch
	Volume finite element with switches. More...
struct	VolumeElementForcesAndSourcesCoreOnContactPrismSideBase
	Base volume element used to integrate on contact surface (could be extended to other volume elements) mofem_forces_and_sources_volume_element. More...
struct	VolumeElementForcesAndSourcesCoreOnSideBase
	Base volume element used to integrate on skeleton. More...
struct	BcManager
	Simple interface for fast problem set-up. More...
struct	BitRefManager
	Managing BitRefLevels. More...
struct	CommInterface
	Managing BitRefLevels. More...
struct	WrapMPIComm
	Wrap MPI comminitactor such that is destroyed when is out of scope. More...
struct	CoreValue
struct	CoreTmp
struct	CoreTmp< 0 >
	Core (interface) class. More...
struct	CoreTmp<-1 >
struct	CutMeshInterface
	Interface to cut meshes. More...
struct	DeprecatedCoreInterface
	Deprecated interface functions. More...
struct	FieldBlas
	Basic algebra on fields. More...
struct	FieldEvaluatorInterface
	Field evaluator interface. More...
struct	SetBitRefLevelTool
	tool class with methods used more than twp times More...
struct	CreateRowComressedADJMatrix
	Create compressed matrix. More...
struct	BlockData
struct	IdxDataType
struct	IdxDataTypePtr
struct	SetOtherLocalGhostVector
struct	SetOtherGlobalGhostVector
struct	CoreInterface
	Interface. More...
struct	ISManager
	Section manager is used to create indexes and sections. More...
struct	LogManager
	Log manager is used to build and partition problems. More...
struct	PetscData
struct	KspMethod
	data structure for ksp (linear solver) context More...
struct	SnesMethod
	data structure for snes (nonlinear solver) context More...
struct	TSMethod
	data structure for TS (time stepping) context More...
struct	BasicMethod
	Data structure to exchange data between mofem and User Loop Methods. More...
struct	FEMethod
	structure for User Loop Methods on finite elements More...
struct	EntityMethod
	Data structure to exchange data between mofem and User Loop Methods on entities. More...
struct	DofMethod
	Data structure to exchange data between mofem and User Loop Methods on entities. More...
struct	MatrixManager
	Matrix manager is used to build and partition problems. More...
struct	MedInterface
	Interface for load MED files. More...
struct	MeshRefinement
	Mesh refinement interface. More...
struct	MeshsetsManager
	Interface for managing meshsets containing materials and boundary conditions. More...
struct	NodeMergerInterface
	Merge node by collapsing edge between them. More...
struct	PipelineManager
	PipelineManager interface. More...
struct	PrismInterface
	Create interface from given surface and insert flat prisms in-between. More...
struct	PrismsFromSurfaceInterface
	merge node from two bit levels More...
struct	ProblemsManager
	Problem manager is used to build and partition problems. More...
struct	SeriesRecorder
struct	Simple
	Simple interface for fast problem set-up. More...
struct	TetGenInterface
	TetGen interface. More...
struct	Tools
	Auxiliary tools. More...
struct	Version
struct	UnknownInterface
	base class for all interface classes More...
struct	VecManager
	Vector manager is used to create vectors \mofem_vectors. More...
struct	FieldEntityEntFiniteElementAdjacencyMap
	FieldEntityEntFiniteElementAdjacencyMap of mofem finite element and entities. More...
struct	FieldEntityEntFiniteElementAdjacencyMap_change_ByWhat
struct	GenericCubitBcData
	Generic bc data structure. More...
struct	DisplacementCubitBcData
	Definition of the displacement bc data structure. More...
struct	ForceCubitBcData
	Definition of the force bc data structure. More...
struct	VelocityCubitBcData
	Definition of the velocity bc data structure. More...
struct	AccelerationCubitBcData
	Definition of the acceleration bc data structure. More...
struct	TemperatureCubitBcData
	Definition of the temperature bc data structure. More...
struct	PressureCubitBcData
	Definition of the pressure bc data structure. More...
struct	HeatFluxCubitBcData
	Definition of the heat flux bc data structure. More...
struct	CfgCubitBcData
	Definition of the cfd_bc data structure. More...
struct	CubitMeshSets
	this struct keeps basic methods for moab meshset about material and boundary conditions More...
struct	CubitMeshSets_change_add_bit_to_cubit_bc_type
	change meshset type More...
struct	CubitMeshSets_change_name
	change meshset name More...
struct	CubitMeshSets_change_attributes
struct	CubitMeshSets_change_attributes_data_structure
struct	CubitMeshSets_change_bc_data_structure
struct	DofEntity
	keeps information about DOF on the entity More...
struct	interface_DofEntity
	Interface to DofEntity. More...
struct	NumeredDofEntity
	keeps information about indexed dofs for the problem More...
struct	FEDofEntity
	keeps information about indexed dofs for the finite element More...
struct	FENumeredDofEntity
	keeps information about indexed dofs for the finite element More...
struct	DofEntity_active_change
struct	NumeredDofEntity_part_and_glob_idx_change
struct	NumeredDofEntity_part_and_mofem_glob_idx_change
struct	NumeredDofEntity_part_and_indices_change
struct	NumeredDofEntity_local_idx_change
struct	NumeredDofEntity_mofem_index_change
struct	NumeredDofEntity_part_and_all_indices_change
struct	FiniteElement
	Finite element definition. More...
struct	DefaultElementAdjacency
	default adjacency map More...
struct	interface_FiniteElementImpl
	Inetface for FE. More...
struct	interface_FiniteElement
struct	interface_FiniteElement< T, T >
struct	EntityCacheDofs
struct	EntityCacheNumeredDofs
struct	EntFiniteElement
	Finite element data for entity. More...
struct	interface_EntFiniteElement
	interface to EntFiniteElement More...
struct	NumeredEntFiniteElement
	Partitioned (Indexed) Finite Element in Problem. More...
struct	NumeredEntFiniteElement_change_part
	Change finite element part. More...
struct	FiniteElement_col_change_bit_add
	Add field to column. More...
struct	FiniteElement_row_change_bit_add
	Add field to row. More...
struct	FiniteElement_change_bit_add
	Add field to data. More...
struct	FiniteElement_col_change_bit_off
	Unset field from column. More...
struct	FiniteElement_row_change_bit_off
	Unset field from row. More...
struct	FiniteElement_change_bit_off
	Unset field from data. More...
struct	FiniteElement_col_change_bit_reset
	Reset field from column. More...
struct	FiniteElement_row_change_bit_reset
	Reset field from row. More...
struct	FiniteElement_change_bit_reset
	Reset field from data. More...
struct	EntityStorage
struct	FieldEntity
	Struct keeps handle to entity in the field. More...
struct	interface_FieldEntity
	Interface to FieldEntity. More...
struct	FieldEntity_change_order
	structure to change FieldEntity order More...
struct	interface_RefEntity
	interface to RefEntity More...
struct	Field
	Provide data structure for (tensor) field approximation. More...
struct	interface_FieldImpl
	Pointer interface for MoFEM::Field. More...
struct	interface_Field
struct	interface_Field< T, T >
struct	GenericAttributeData
	Generic attribute data structure. More...
struct	BlockSetAttributes
	Arbitrary block attributes data structure. More...
struct	Mat_Elastic
	Elastic material data structure. More...
struct	Mat_Thermal
	Thermal material data structure. More...
struct	Mat_Moisture
	moisture transport material data structure More...
struct	Block_BodyForces
	Body force data structure. More...
struct	Mat_Elastic_TransIso
	Transverse Isotropic material data structure. More...
struct	Mat_Interf
	Linear interface data structure. More...
struct	Mat_Elastic_EberleinHolzapfel1
	Mat_Elastic with Fibres. More...
struct	ComposedProblemsData
struct	Problem
	keeps basic data about problem More...
struct	ProblemChangeRefLevelBitAdd
	add ref level to problem More...
struct	ProblemChangeRefLevelBitSet
	set ref level to problem More...
struct	ProblemChangeRefLevelBitDofMaskSet
	set prof dof bit ref mask More...
struct	ProblemFiniteElementChangeBitAdd
	add finite element to problem More...
struct	ProblemChangeRefLevelBitDofMaskAdd
	set prof dof bit ref mask More...
struct	ProblemFiniteElementChangeBitUnSet
	remove finite element from problem More...
struct	ProblemZeroNbRowsChange
	zero nb. of DOFs in row More...
struct	ProblemZeroNbColsChange
	zero nb. of DOFs in col More...
struct	ProblemClearNumeredFiniteElementsChange
	clear problem finite elements More...
struct	ProblemClearSubProblemData
	Clear sub-problem data structure. More...
struct	ProblemClearComposedProblemData
	Clear composed problem data structure. More...
struct	RefElement
	keeps data about abstract refined finite element More...
struct	RefElement_MESHSET
	keeps data about abstract MESHSET finite element More...
struct	RefElement_PRISM
	keeps data about abstract PRISM finite element More...
struct	RefElementVolume
	keeps data about abstract TET finite element More...
struct	RefElementFace
	keeps data about abstract TRI finite element More...
struct	RefElement_EDGE
	keeps data about abstract EDGE finite element More...
struct	RefElement_VERTEX
	keeps data about abstract VERTEX finite element More...
struct	interface_RefElement
	intrface to RefElement More...
struct	SideNumber
	keeps information about side number for the finite element More...
struct	BasicEntityData
	PipelineManager data. like access to moab interface and basic tag handlers. More...
struct	RefEntityTmp
struct	RefEntityTmp< 0 >
	Struct keeps handle to refined handle. More...
struct	RefEntityTmp<-1 >
struct	RefEntity_change_parent
	change parent More...
struct	RefEntity_change_left_shift
	ref mofem entity, left shift More...
struct	RefEntity_change_right_shift
	ref mofem entity, right shift More...
struct	FieldSeries
	Structure for recording (time) series. More...
struct	interface_FieldSeries
struct	FieldSeriesStep
	Structure for keeping time and step. More...
struct	CubitMeshsetType_mi_tag
	MultiIndex Tag for field id. More...
struct	CubitMeshsetMaskedType_mi_tag
struct	CubitMeshsets_name
struct	Composite_Cubit_msId_And_MeshsetType_mi_tag
struct	BitFieldId_mi_tag
struct	Unique_mi_tag
struct	DOF_Unique_mi_tag
struct	FE_Unique_mi_tag
struct	Ent_mi_tag
struct	FEEnt_mi_tag
struct	EntType_mi_tag
struct	FiniteElement_Meshset_mi_tag
struct	BitFEId_mi_tag
struct	FiniteElement_name_mi_tag
struct	SideNumber_mi_tag
struct	EntDofIdx_mi_tag
struct	Space_mi_tag
struct	Idx_mi_tag
struct	PetscGlobalIdx_mi_tag
struct	PetscLocalIdx_mi_tag
struct	Part_mi_tag
struct	Ent_Ent_mi_tag
struct	Ent_Owner_mi_tag
struct	Unique_Ent_mi_tag
struct	Unique_FiniteElement_mi_tag
struct	Ent_FiniteElement_mi_tag
struct	Meshset_mi_tag
struct	Order_mi_tag
	MultiIndex Tag for field order. More...
struct	FieldName_mi_tag
	MultiIndex Tag for field name. More...
struct	BitFieldId_space_mi_tag
struct	BitProblemId_mi_tag
struct	Problem_mi_tag
struct	Ent_ParallelStatus
struct	Proc_mi_tag
struct	Composite_mi_tag
struct	Composite_Unique_mi_tag
struct	Composite_EntType_and_ParentEntType_mi_tag
struct	Composite_ParentEnt_And_EntType_mi_tag
struct	Composite_ParentEnt_And_BitsOfRefinedEdges_mi_tag
struct	Composite_Name_And_Ent_And_EntDofIdx_mi_tag
struct	Composite_Ent_And_EntDofIdx_mi_tag
struct	Composite_Name_And_Ent_mi_tag
struct	Composite_Part_And_Order_mi_tag
struct	Composite_Name_Ent_Order_And_CoeffIdx_mi_tag
struct	Composite_Ent_Order_And_CoeffIdx_mi_tag
struct	Composite_Name_Ent_And_Part_mi_tag
struct	Composite_Name_And_Part_mi_tag
struct	Composite_Ent_and_ShortId_mi_tag
struct	Composite_EntType_and_Space_mi_tag
struct	SeriesID_mi_tag
struct	SeriesName_mi_tag
struct	Composite_SeriesID_And_Step_mi_tag
struct	Composite_SeriesName_And_Step_mi_tag
struct	Composite_SeriesName_And_Time_mi_tag
struct	PairNameFEMethodPtr
struct	BasicMethodPtr
struct	DMCtx
	PETSc Discrete Manager data structure. More...
struct	KspCtx
	Interface for linear (KSP) solver. More...
struct	SnesCtx
	Interface for nonlinear (SNES) solver. More...
struct	TsCtx
	Interface for Time Stepping (TS) solver. More...
struct	BlockMatData
struct	OpBaseImpl< USER_ASSEMBLE, EleOp >

Typedefs
template<typename T >
using	ShardVec = boost::shared_ptr< std::vector< T > >
using	EdgeElementForcesAndSourcesCore = EdgeElementForcesAndSourcesCoreSwitch< 0 >
	Edge finite element default. More...
using	DofsAllocator = ublas::unbounded_array< FEDofEntity *, std::allocator< FEDofEntity * > >
using	VectorDofs = ublas::vector< FEDofEntity *, DofsAllocator >
using	FieldEntAllocator = ublas::unbounded_array< FieldEntity *, std::allocator< FieldEntity * > >
using	VectorFieldEntities = ublas::vector< FieldEntity *, FieldEntAllocator >
using	BaseDerivatives = EntitiesFieldData::EntData::BaseDerivatives
using	FaceElementForcesAndSourcesCore = FaceElementForcesAndSourcesCoreSwitch< 0 >
	Face finite element default. More...
using	ScalarFun = boost::function< double(const double, const double, const double)>
	Scalar function type. More...
using	ConstantFun = boost::function< double()>
	Constant function type. More...
template<int DIM>
using	VectorFun = boost::function< FTensor::Tensor1< double, DIM >(const double, const double, const double)>
	Vector function type. More...
using	OpCalculateHOJacForFace = OpCalculateHOJacForFaceImpl< 2 >
using	OpCalculateHOJacForFaceEmbeddedIn3DSpace = OpCalculateHOJacForFaceImpl< 3 >
using	VolumeElementForcesAndSourcesCore = VolumeElementForcesAndSourcesCoreSwitch< 0 >
	Volume finite element default. More...
using	VolumeElementForcesAndSourcesCoreOnContactPrismSide = VolumeElementForcesAndSourcesCoreOnContactPrismSideSwitch< 0 >
	Volume element used to integrate on contact element (could be extended for other volume elements) mofem_forces_and_sources_volume_element. More...
using	VolumeElementForcesAndSourcesCoreOnSide = VolumeElementForcesAndSourcesCoreOnSideSwitch< 0 >
	Volume element used to integrate on skeleton. More...
using	Core = CoreTmp< 0 >
using	Sev = MoFEM::LogManager::SeverityLevel
typedef multi_index_container< boost::shared_ptr< RefElement >, indexed_by< ordered_unique< tag< Ent_mi_tag >, const_mem_fun< RefElement::interface_type_RefEntity, EntityHandle, &RefElement::getEnt > >, ordered_non_unique< tag< Ent_Ent_mi_tag >, const_mem_fun< RefElement::interface_type_RefEntity, EntityHandle, &RefElement::getParentEnt > >, ordered_non_unique< tag< Composite_ParentEnt_And_BitsOfRefinedEdges_mi_tag >, composite_key< RefElement, const_mem_fun< RefElement::interface_type_RefEntity, EntityHandle, &RefElement::getParentEnt >, const_mem_fun< RefElement, int, &RefElement::getBitRefEdgesUlong > > > > >	RefElement_multiIndex_parents_view
using	Interface = DeprecatedCoreInterface
typedef CubitMeshSet_multiIndex::index< CubitMeshsetType_mi_tag >::type	CubitMeshsetByType
typedef CubitMeshSet_multiIndex::index< CubitMeshsetMaskedType_mi_tag >::type	CubitMeshsetByMask
typedef CubitMeshSet_multiIndex::index< CubitMeshsets_name >::type	CubitMeshsetByName
typedef CubitMeshSet_multiIndex::index< CubitMeshsetType_mi_tag >::type	CubitMeshsetById
typedef multi_index_container< CubitMeshSets, indexed_by< hashed_unique< tag< Meshset_mi_tag >, member< CubitMeshSets, EntityHandle, &CubitMeshSets::meshset > >, ordered_non_unique< tag< CubitMeshsetType_mi_tag >, const_mem_fun< CubitMeshSets, unsigned long int, &CubitMeshSets::getBcTypeULong > >, ordered_non_unique< tag< CubitMeshsetMaskedType_mi_tag >, const_mem_fun< CubitMeshSets, unsigned long int, &CubitMeshSets::getMaksedBcTypeULong > >, ordered_non_unique< tag< CubitMeshsets_name >, const_mem_fun< CubitMeshSets, std::string, &CubitMeshSets::getName > >, hashed_unique< tag< Composite_Cubit_msId_And_MeshsetType_mi_tag >, composite_key< CubitMeshSets, const_mem_fun< CubitMeshSets, int, &CubitMeshSets::getMeshsetId >, const_mem_fun< CubitMeshSets, unsigned long int, &CubitMeshSets::getMaksedBcTypeULong > > > > >	CubitMeshSet_multiIndex
	Stores data about meshsets (see CubitMeshSets) storing data about boundary conditions, interfaces, sidesets, nodests, blocksets. More...
using	DofEntityByUId = DofEntity_multiIndex::index< Unique_mi_tag >::type
using	DofEntityByEnt = DofEntity_multiIndex::index< Ent_mi_tag >::type
	Dof multi-index by entity. More...
using	DofEntity_multiIndex_uid_view = multi_index_container< boost::shared_ptr< DofEntity >, indexed_by< ordered_unique< const_mem_fun< DofEntity, UId, &DofEntity::getLocalUniqueId > > > >
	multi-index view on DofEntity by uid More...
using	DofEntity_multiIndex_global_uid_view = multi_index_container< boost::shared_ptr< DofEntity >, indexed_by< ordered_unique< const_mem_fun< DofEntity, UId, &DofEntity::getGlobalUniqueId > > > >
	multi-index view on DofEntity by uid More...
typedef std::vector< boost::weak_ptr< DofEntity > >	DofEntity_vector_view
	vector view on DofEntity by uid More...
typedef multi_index_container< boost::shared_ptr< DofEntity >, indexed_by< ordered_unique< const_mem_fun< DofEntity, UId, &DofEntity::getLocalUniqueId > >, ordered_non_unique< const_mem_fun< DofEntity, char, &DofEntity::getActive > > > >	DofEntity_multiIndex_active_view
	multi-index view on DofEntity activity More...
using	FEDofEntityByUId = FEDofEntity_multiIndex::index< Unique_mi_tag >::type
	Dof entity multi-index by UId and entity. More...
using	FENumeredDofEntityByUId = FENumeredDofEntity_multiIndex::index< Unique_mi_tag >::type
	Dof entity multi-index by UId. More...
using	FENumeredDofEntityByEnt = FENumeredDofEntity_multiIndex::index< Ent_mi_tag >::type
	Numbered DoF multi-index by entity. More...
using	NumeredDofEntityByUId = NumeredDofEntity_multiIndex::index< Unique_mi_tag >::type
	Numbered DoF multi-index by UId. More...
using	NumeredDofEntityByLocalIdx = NumeredDofEntity_multiIndex::index< PetscLocalIdx_mi_tag >::type
	Numbered DoF multi-index by local index. More...
using	NumeredDofEntityByEnt = NumeredDofEntity_multiIndex::index< Ent_mi_tag >::type
	Numbered DoF multi-index by entity. More...
using	NumeredDofEntity_multiIndex_uid_view_ordered = multi_index_container< boost::shared_ptr< NumeredDofEntity >, indexed_by< ordered_unique< const_mem_fun< NumeredDofEntity::interface_type_DofEntity, UId, &NumeredDofEntity::getLocalUniqueId > > > >
using	NumeredDofEntity_multiIndex_idx_view_hashed = multi_index_container< boost::shared_ptr< NumeredDofEntity >, indexed_by< hashed_unique< const_mem_fun< NumeredDofEntity, DofIdx, &NumeredDofEntity::getDofIdx > >> >
using	NumeredDofEntity_multiIndex_petsc_local_dof_view_ordered_non_unique = multi_index_container< boost::shared_ptr< NumeredDofEntity >, indexed_by< ordered_non_unique< const_mem_fun< NumeredDofEntity, DofIdx, &NumeredDofEntity::getPetscLocalDofIdx > >> >
using	NumeredDofEntity_multiIndex_coeff_idx_ordered_non_unique = multi_index_container< boost::shared_ptr< NumeredDofEntity >, indexed_by< ordered_non_unique< const_mem_fun< NumeredDofEntity::interface_type_DofEntity, FieldCoefficientsNumber, &NumeredDofEntity::getDofCoeffIdx > >> >
typedef boost::function< MoFEMErrorCode(Interface &moab, const Field &field, const EntFiniteElement &fe, std::vector< EntityHandle > &adjacency)>	ElementAdjacencyFunct
	user adjacency function More...
using	CacheTuple = std::tuple< std::vector< EntityCacheDofs >, std::vector< EntityCacheNumeredDofs >, std::vector< EntityCacheNumeredDofs > >
using	CacheTupleWeakPtr = boost::weak_ptr< CacheTuple >
using	CacheTupleSharedPtr = boost::shared_ptr< CacheTuple >
typedef EntFiniteElement_multiIndex::index< FiniteElement_name_mi_tag >::type	EntFiniteElementByName
	Entity finite element multi-index by finite element name. More...
using	FieldEntityByUId = FieldEntity_multiIndex::index< Unique_mi_tag >::type
	Entity index by field name. More...
using	FieldEntity_multiIndex_global_uid_view = multi_index_container< boost::shared_ptr< FieldEntity >, indexed_by< ordered_unique< tag< Unique_mi_tag >, const_mem_fun< FieldEntity, UId, &FieldEntity::getGlobalUniqueId > > > >
	multi-index view on DofEntity by uid More...
using	FieldEntity_multiIndex_ent_view = multi_index_container< boost::shared_ptr< FieldEntity >, indexed_by< sequenced<>, ordered_non_unique< tag< Ent_mi_tag >, const_mem_fun< FieldEntity::interface_type_RefEntity, EntityHandle, &FieldEntity::getEnt > > > >
using	FieldEntity_multiIndex_spaceType_view = multi_index_container< boost::shared_ptr< FieldEntity >, indexed_by< sequenced<>, ordered_non_unique< tag< Composite_EntType_and_Space_mi_tag >, composite_key< FieldEntity, const_mem_fun< FieldEntity::interface_type_RefEntity, EntityType, &FieldEntity::getEntType >, const_mem_fun< FieldEntity::interface_type_Field, FieldSpace, &FieldEntity::getSpace > > > > >
typedef std::vector< boost::weak_ptr< FieldEntity > >	FieldEntity_vector_view
using	FieldEntity_multiIndex = multi_index_container< boost::shared_ptr< FieldEntity >, indexed_by< ordered_unique< tag< Unique_mi_tag >, member< FieldEntity, UId, &FieldEntity::localUId > >, ordered_non_unique< tag< Ent_mi_tag >, const_mem_fun< FieldEntity::interface_type_RefEntity, EntityHandle, &FieldEntity::getEnt > > > >
typedef boost::function< int(const int order)>	FieldOrderFunct
	user adjacency function More...
typedef FieldOrderFunct	FieldOrderTable[MBMAXTYPE]
	user adjacency function table More...
typedef multi_index_container< boost::shared_ptr< Field >, indexed_by< ordered_unique< tag< BitFieldId_mi_tag >, const_mem_fun< Field, const BitFieldId &, &Field::getId >, LtBit< BitFieldId > > > >	Field_multiIndex_view
using	EmptyFieldBlocks = Problem::EmptyFieldBlocks
typedef multi_index_container< boost::shared_ptr< RefElement >, indexed_by< ordered_unique< tag< Ent_mi_tag >, const_mem_fun< RefElement::interface_type_RefEntity, EntityHandle, &RefElement::getEnt > > > >	RefElement_multiIndex
using	RefEntity = RefEntityTmp< 0 >
using	RefEntity_multiIndex = multi_index_container< boost::shared_ptr< RefEntity >, indexed_by< ordered_unique< tag< Ent_mi_tag >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getEnt > >, ordered_non_unique< tag< Ent_Ent_mi_tag >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getParentEnt > >, ordered_non_unique< tag< Composite_EntType_and_ParentEntType_mi_tag >, composite_key< RefEntity, const_mem_fun< RefEntity, EntityType, &RefEntity::getEntType >, const_mem_fun< RefEntity, EntityType, &RefEntity::getParentEntType > > >, ordered_non_unique< tag< Composite_ParentEnt_And_EntType_mi_tag >, composite_key< RefEntity, const_mem_fun< RefEntity, EntityType, &RefEntity::getEntType >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getParentEnt > > > > >
using	RefEntity_multiIndex_view_by_hashed_parent_entity = multi_index_container< boost::shared_ptr< RefEntity >, indexed_by< hashed_non_unique< const_mem_fun< RefEntity, EntityHandle, &RefEntity::getParentEnt > >, hashed_unique< tag< Composite_EntType_and_ParentEntType_mi_tag >, composite_key< boost::shared_ptr< RefEntity >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getEnt >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getParentEnt > >> > >
	multi-index view of RefEntity by parent entity More...
using	RefEntity_multiIndex_view_by_ordered_parent_entity = multi_index_container< boost::shared_ptr< RefEntity >, indexed_by< ordered_non_unique< const_mem_fun< RefEntity, EntityHandle, &RefEntity::getParentEnt > >, hashed_unique< tag< Composite_EntType_and_ParentEntType_mi_tag >, composite_key< boost::shared_ptr< RefEntity >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getEnt >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getParentEnt > >> > >
using	RefEntity_multiIndex_view_sequence_ordered_view = multi_index_container< boost::shared_ptr< RefEntity >, indexed_by< sequenced<>, ordered_unique< tag< Ent_mi_tag >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getEnt > >> >
typedef multi_index_container< FieldSeries, indexed_by< ordered_unique< tag< SeriesID_mi_tag >, const_mem_fun< FieldSeries, EntityID, &FieldSeries::get_meshset_id > >, ordered_unique< tag< SeriesName_mi_tag >, const_mem_fun< FieldSeries, boost::string_ref, &FieldSeries::getNameRef > > > >	Series_multiIndex
	Series multi index. More...
typedef multi_index_container< FieldSeriesStep, indexed_by< ordered_unique< tag< Composite_SeriesID_And_Step_mi_tag >, composite_key< FieldSeriesStep, const_mem_fun< FieldSeriesStep::interface_type_FieldSeries, EntityID, &FieldSeriesStep::get_meshset_id >, member< FieldSeriesStep, int, &FieldSeriesStep::step_number > > >, ordered_unique< tag< Composite_SeriesName_And_Step_mi_tag >, composite_key< FieldSeriesStep, const_mem_fun< FieldSeriesStep::interface_type_FieldSeries, boost::string_ref, &FieldSeriesStep::getNameRef >, member< FieldSeriesStep, int, &FieldSeriesStep::step_number > > >, ordered_non_unique< tag< SeriesName_mi_tag >, const_mem_fun< FieldSeriesStep::interface_type_FieldSeries, boost::string_ref, &FieldSeriesStep::getNameRef > >, ordered_non_unique< tag< Composite_SeriesName_And_Time_mi_tag >, composite_key< FieldSeriesStep, const_mem_fun< FieldSeriesStep::interface_type_FieldSeries, boost::string_ref, &FieldSeriesStep::getNameRef >, const_mem_fun< FieldSeriesStep, double, &FieldSeriesStep::get_time > > > > >	SeriesStep_multiIndex
	Step multi index. More...
typedef std::deque< PairNameFEMethodPtr >	FEMethodsSequence
typedef std::deque< BasicMethodPtr >	BasicMethodsSequence
typedef multi_index_container< BlockMatData, indexed_by< ordered_unique< composite_key< BlockMatData, member< BlockMatData, std::string, &BlockMatData::rowField >, member< BlockMatData, std::string, &BlockMatData::colField >, member< BlockMatData, EntityType, &BlockMatData::rowType >, member< BlockMatData, EntityType, &BlockMatData::colType >, member< BlockMatData, int, &BlockMatData::rowSide >, member< BlockMatData, int, &BlockMatData::colSide > > >, ordered_non_unique< composite_key< BlockMatData, member< BlockMatData, std::string, &BlockMatData::rowField >, member< BlockMatData, std::string, &BlockMatData::colField >, member< BlockMatData, EntityType, &BlockMatData::rowType >, member< BlockMatData, EntityType, &BlockMatData::colType > > >, ordered_non_unique< composite_key< BlockMatData, member< BlockMatData, std::string, &BlockMatData::rowField >, member< BlockMatData, std::string, &BlockMatData::colField > > >, ordered_non_unique< member< BlockMatData, std::string, &BlockMatData::rowField > >, ordered_non_unique< member< BlockMatData, std::string, &BlockMatData::colField > > > >	BlockMatContainer
using	EntData = DataForcesAndSourcesCore::EntData
using	DomainEle = VolumeElementForcesAndSourcesCore
using	DomainEleOp = DomainEle::UserDataOperator
using	DomainEleOpAssembly = FormsIntegrators< DomainEleOp >::Assembly< USER_ASSEMBLE >::OpBase
using	SkeletonEle = FaceElementForcesAndSourcesCore
using	SkeletonEleOp = SkeletonEle::UserDataOperator
using	SkeletonEleOpAssembly = FormsIntegrators< SkeletonEleOp >::Assembly< USER_ASSEMBLE >::OpBase
using	BoundaryEle = FaceElementForcesAndSourcesCore
using	BoundaryEleOp = BoundaryEle::UserDataOperator
using	BoundaryEleOpAssembly = FormsIntegrators< BoundaryEleOp >::Assembly< USER_ASSEMBLE >::OpBase
using	DomainSideEle = VolumeElementForcesAndSourcesCoreOnSide
using	DomainSideEleOp = DomainSideEle::UserDataOperator
using	DomainSideEleOpAssembly = FormsIntegrators< DomainSideEleOp >::Assembly< USER_ASSEMBLE >::OpBase
Scalar values
using	OpCalculateScalarFieldValuesDot = OpCalculateScalarFieldValuesFromPetscVecImpl< PetscData::CTX_SET_X_T >
using	OpCalculateScalarFieldValuesDotDot = OpCalculateScalarFieldValuesFromPetscVecImpl< PetscData::CTX_SET_X_TT >
using	OpCalculateScalarValuesDot = OpCalculateScalarFieldValuesDot
Vector field values at integration points
template<int Tensor_Dim>
using	OpCalculateVectorFieldValuesDot = OpCalculateVectorFieldValuesFromPetscVecImpl< Tensor_Dim, PetscData::CTX_SET_X_T >
	Get time derivatives of values at integration pts for tensor filed rank 1, i.e. vector field. More...
template<int Tensor_Dim>
using	OpCalculateVectorFieldValuesDotDot = OpCalculateVectorFieldValuesFromPetscVecImpl< Tensor_Dim, PetscData::CTX_SET_X_TT >
	Get second time derivatives of values at integration pts for tensor filed rank 1, i.e. vector field. More...
Operators for faces
using	OpSetInvJacHcurlFace = OpSetInvJacHcurlFaceImpl< 2 >
using	OpSetInvJacHcurlFaceEmbeddedIn3DSpace = OpSetInvJacHcurlFaceImpl< 3 >
using	OpSetContravariantPiolaTransformOnFace2D = OpSetContravariantPiolaTransformOnFace2DImpl< 2 >
using	OpSetContravariantPiolaTransformOnFace2DEmbeddedIn3DSpace = OpSetContravariantPiolaTransformOnFace2DImpl< 3 >
Operators for edges
using	OpSetContrariantPiolaTransformOnEdge = OpSetContravariantPiolaTransformOnEdge2D

Enumerations
enum	AssemblyType { PETSC , USER_ASSEMBLE , LAST_ASSEMBLE }
	[Storage and set boundary conditions] More...
enum	IntegrationType { GAUSS , USER_INTEGRATION , LAST_INTEGRATION }
	Form integrator integration types. More...

Functions
PetscErrorCode	PetscOptionsGetInt (PetscOptions *, const char pre[], const char name[], PetscInt *ivalue, PetscBool *set)
PetscErrorCode	PetscOptionsGetReal (PetscOptions *, const char pre[], const char name[], PetscReal *dval, PetscBool *set)
PetscErrorCode	PetscOptionsGetScalar (PetscOptions *, const char pre[], const char name[], PetscScalar *dval, PetscBool *set)
PetscErrorCode	PetscOptionsGetString (PetscOptions *, const char pre[], const char name[], char str[], size_t size, PetscBool *set)
PetscErrorCode	PetscOptionsGetBool (PetscOptions *, const char pre[], const char name[], PetscBool *bval, PetscBool *set)
PetscErrorCode	PetscOptionsGetRealArray (PetscOptions *, const char pre[], const char name[], PetscReal dval[], PetscInt *nmax, PetscBool *set)
PetscErrorCode	PetscOptionsGetEList (PetscOptions *, const char pre[], const char name[], const char *const *list, PetscInt next, PetscInt *value, PetscBool *set)
PetscErrorCode	PetscOptionsGetIntArray (PetscOptions options, const char pre[], const char name[], PetscInt dvalue[], PetscInt *nmax, PetscBool *set)
PetscErrorCode	PetscOptionsGetScalarArray (PetscOptions options, const char pre[], const char name[], PetscScalar dvalue[], PetscInt *nmax, PetscBool *set)
template<typename T >
PetscObject	getPetscObject (T obj)
MPI_Comm	getCommFromPetscObject (PetscObject obj)
	Get the Comm From Petsc Object object. More...
SmartPetscObj< Vec >	smartVectorDuplicate (SmartPetscObj< Vec > &vec)
	Create duplicate vector of smart vector. More...
SmartPetscObj< Vec >	smartVectorDuplicate (Vec &vec)
SmartPetscObj< Mat >	smartMatDuplicate (Mat &mat, MatDuplicateOption op)
SmartPetscObj< Mat >	smartMatDuplicate (SmartPetscObj< Mat > &mat, MatDuplicateOption op)
template<typename T1 >
auto	getVectorAdaptor (T1 ptr, const size_t n)
	Get Vector adaptor. More...
template<typename T1 >
auto	getMatrixAdaptor (T1 ptr, const size_t n, const size_t m)
	Get Matrix adaptor. More...
template<class X >
std::string	toString (X x)
template<int S = 1, class T , class A >
static auto	getFTensor0FromVec (ublas::vector< T, A > &data)
	Get tensor rank 0 (scalar) form data vector. More...
template<int Tensor_Dim, int S = 1, class T , class L , class A >
FTensor::Tensor1< FTensor::PackPtr< T *, S >, Tensor_Dim >	getFTensor1FromMat (ublas::matrix< T, L, A > &data)
	Get tensor rank 1 (vector) form data matrix. More...
template<int Tensor_Dim, int S = 1>
auto	getFTensor1FromMat (MatrixDouble &data)
	Get tensor rank 1 (vector) form data matrix (specialization) More...
template<int Tensor_Dim0, int Tensor_Dim1, class T , class L , class A >
FTensor::Tensor2< FTensor::PackPtr< T *, 1 >, Tensor_Dim0, Tensor_Dim1 >	getFTensor2FromMat (ublas::matrix< T, L, A > &data)
	Get tensor rank 2 (matrix) form data matrix. More...
template<>
FTensor::Tensor2< FTensor::PackPtr< double *, 1 >, 3, 3 >	getFTensor2FromMat (MatrixDouble &data)
	Get tensor rank 2 (matrix) form data matrix (specialization) More...
template<int Tensor_Dim, int S, class T , class L , class A >
static auto	getFTensor2SymmetricFromMat (ublas::matrix< T, L, A > &data)
	Get symmetric tensor rank 2 (matrix) form data matrix. More...
template<int Tensor_Dim, int S = 1>
static auto	getFTensor2SymmetricFromMat (MatrixDouble &data)
template<int Tensor_Dim01, int Tensor_Dim23, int S = 1, class T , class L , class A >
static FTensor::Ddg< FTensor::PackPtr< T *, 1 >, Tensor_Dim01, Tensor_Dim23 >	getFTensor4DdgFromMat (ublas::matrix< T, L, A > &data)
	Get symmetric tensor rank 4 on first two and last indices from form data matrix. More...
template<int Tensor_Dim01, int Tensor_Dim23, int S = 1>
static auto	getFTensor4DdgFromMat (MatrixDouble &data)
template<int Tensor_Dim01, int Tensor_Dim2, int S = 1, class T , class L , class A >
static FTensor::Dg< FTensor::PackPtr< T *, 1 >, Tensor_Dim01, Tensor_Dim2 >	getFTensor3DgFromMat (ublas::matrix< T, L, A > &data)
	Get symmetric tensor rank 3 on the first two indices from form data matrix. More...
template<int Tensor_Dim01, int Tensor_Dim2, int S = 1>
static auto	getFTensor3DgFromMat (MatrixDouble &data)
template<int Tensor_Dim0, int Tensor_Dim1, int Tensor_Dim2, int Tensor_Dim3, int S = 1, class T , class L , class A >
static FTensor::Tensor4< FTensor::PackPtr< T *, 1 >, Tensor_Dim0, Tensor_Dim1, Tensor_Dim2, Tensor_Dim3 >	getFTensor4FromMat (ublas::matrix< T, L, A > &data)
	Get tensor rank 4 (non symmetric) form data matrix. More...
template<int Tensor_Dim0, int Tensor_Dim1, int Tensor_Dim2, int Tensor_Dim3, int S = 1>
static auto	getFTensor4FromMat (MatrixDouble &data)
template<int Tensor_Dim0, int Tensor_Dim1, int Tensor_Dim2, int S = 1, class T , class L , class A >
static FTensor::Tensor3< FTensor::PackPtr< T *, 1 >, Tensor_Dim0, Tensor_Dim1, Tensor_Dim2 >	getFTensor3FromMat (ublas::matrix< T, L, A > &data)
	Get tensor rank 3 (non symmetries) form data matrix. More...
template<int Tensor_Dim0, int Tensor_Dim1, int Tensor_Dim2, int S = 1>
static auto	getFTensor3FromMat (MatrixDouble &data)
template<int DIM>
FTensor::Tensor1< FTensor::PackPtr< double *, DIM >, DIM >	getFTensor1FromPtr (double *ptr)
	Make Tensor1 from pointer. More...
template<>
FTensor::Tensor1< FTensor::PackPtr< double *, 2 >, 2 >	getFTensor1FromPtr< 2 > (double *ptr)
template<>
FTensor::Tensor1< FTensor::PackPtr< double *, 3 >, 3 >	getFTensor1FromPtr< 3 > (double *ptr)
template<int DIM1, int DIM2>
FTensor::Tensor2< FTensor::PackPtr< double *, DIM1 *DIM2 >, DIM1, DIM2 >	getFTensor2FromPtr (double *ptr)
	Make Tensor2 from pointer. More...
template<>
FTensor::Tensor2< FTensor::PackPtr< double *, 6 >, 3, 2 >	getFTensor2FromPtr< 3, 2 > (double *ptr)
template<>
FTensor::Tensor2< FTensor::PackPtr< double *, 9 >, 3, 3 >	getFTensor2FromPtr< 3, 3 > (double *ptr)
template<>
FTensor::Tensor2< FTensor::PackPtr< double *, 4 >, 2, 2 >	getFTensor2FromPtr< 2, 2 > (double *ptr)
template<int DIM>
FTensor::Tensor2_symmetric< FTensor::PackPtr< double *, DIM *DIM >, DIM >	getFTensor2SymmetricLowerFromPtr (double *ptr)
	Make summetric Tensor2 from pointer, taking lower triangle of matrix. More...
template<>
FTensor::Tensor2_symmetric< FTensor::PackPtr< double *, 9 >, 3 >	getFTensor2SymmetricLowerFromPtr< 3 > (double *ptr)
template<>
FTensor::Tensor2_symmetric< FTensor::PackPtr< double *, 4 >, 2 >	getFTensor2SymmetricLowerFromPtr< 2 > (double *ptr)
template<int DIM, int S>
FTensor::Tensor1< FTensor::PackPtr< double *, S >, DIM >	getFTensor1FromArray (VectorDouble &data)
	Get FTensor1 from array. More...
template<>
FTensor::Tensor1< FTensor::PackPtr< double *, 2 >, 2 >	getFTensor1FromArray (VectorDouble &data)
template<int DIM, int S>
FTensor::Tensor1< FTensor::PackPtr< double *, S >, DIM >	getFTensor1FromMat (MatrixDouble &data, const size_t rr)
template<>
FTensor::Tensor1< FTensor::PackPtr< double *, 1 >, 2 >	getFTensor1FromMat (MatrixDouble &data, const size_t rr)
template<int DIM, int S>
FTensor::Tensor1< FTensor::PackPtr< double *, S >, DIM >	getFTensor1FromArrayDiag (MatrixDouble &data, const size_t rr)
	Get FTensor1 from array. More...
template<>
FTensor::Tensor1< FTensor::PackPtr< double *, 2 >, 2 >	getFTensor1FromArrayDiag (MatrixDouble &data, const size_t rr)
template<int DIM1, int DIM2, int S>
FTensor::Tensor2< FTensor::PackPtr< double *, S >, DIM1, DIM2 >	getFTensor2FromArray (MatrixDouble &data, const size_t rr)
template<int S, typename T , typename L , typename A >
auto	getFTensor2FromArray2by2 (ublas::matrix< T, L, A > &data, const FTensor::Number< S > &, const size_t rr)
template<int S, typename T , typename L , typename A >
auto	getFTensor2FromArray3by3 (ublas::matrix< T, L, A > &data, const FTensor::Number< S > &, const size_t rr)
template<int DIM1, int DIM2, int S>
auto	getFTensor2FromArray (MatrixADouble &data, const size_t rr)
MoFEMErrorCode	computeMatrixInverse (MatrixDouble &mat)
	compute matrix inverse with lapack dgetri More...
MoFEMErrorCode	solveLinearSystem (MatrixDouble &mat, VectorDouble &f)
	solve linear system with lapack dgesv More...
MoFEMErrorCode	solveLinearSystem (const MatrixDouble &mat, VectorDouble &f)
	Solve linear system of equations using Lapack. More...
MoFEMErrorCode	computeEigenValuesSymmetric (const MatrixDouble &mat, VectorDouble &eig, MatrixDouble &eigen_vec)
	compute eigenvalues of a symmetric matrix using lapack dsyev More...
template<int DIM>
MoFEMErrorCode	computeEigenValuesSymmetric (FTensor::Tensor2< double, DIM, DIM > &eigen_vec, FTensor::Tensor1< double, DIM > &eig)
	compute eigenvalues of a symmetric matrix using lapack dsyev More...
template<int DIM>
MoFEMErrorCode	computeEigenValuesSymmetric (const FTensor::Tensor2_symmetric< FTensor::PackPtr< double *, 1 >, DIM > &mat, FTensor::Tensor1< double, DIM > &eig, FTensor::Tensor2< double, DIM, DIM > &eigen_vec)
	compute eigenvalues of a symmetric tensor using lapack dsyev More...
template<int DIM>
MoFEMErrorCode	computeEigenValuesSymmetric (const FTensor::Tensor2_symmetric< double, DIM > &mat, FTensor::Tensor1< double, DIM > &eig, FTensor::Tensor2< double, DIM, DIM > &eigen_vec)
	compute eigenvalues of a symmetric tensor using lapack dsyev More...
template<typename T >
static auto	determinantTensor3by3 (T &t)
	Calculate the determinant of a 3x3 matrix or a tensor of rank 2. More...
template<int Tensor_Dim, class T , class L , class A >
MoFEMErrorCode	invertTensor3by3 (ublas::matrix< T, L, A > &jac_data, ublas::vector< T, A > &det_data, ublas::matrix< T, L, A > &inv_jac_data)
	Calculate inverse of tensor rank 2 at integration points. More...
template<>
MoFEMErrorCode	invertTensor3by3< 3, double, ublas::row_major, DoubleAllocator > (MatrixDouble &jac_data, VectorDouble &det_data, MatrixDouble &inv_jac_data)
template<class T1 , class T2 >
MoFEMErrorCode	determinantTensor3by3 (T1 &t, T2 &det)
	Calculate determinant 3 by 3. More...
template<class T1 , class T2 >
MoFEMErrorCode	determinantTensor2by2 (T1 &t, T2 &det)
	Calculate determinant 2 by 2. More...
template<class T1 , class T2 , class T3 >
MoFEMErrorCode	invertTensor3by3 (T1 &t, T2 &det, T3 &inv_t)
	Calculate matrix inverse 3 by 3. More...
template<class T1 , class T2 , class T3 >
MoFEMErrorCode	invertTensor2by2 (T1 &t, T2 &det, T3 &inv_t)
	Calculate matrix inverse 2 by 2. More...
template<typename Extractor , typename Iterator >
moab::Range::iterator	insertOrdered (Range &r, Extractor, Iterator begin_iter, Iterator end_iter)
	Insert ordered mofem multi-index into range. More...
template<typename MI , typename MO = Modify_change_nothing>
MoFEMErrorCode	reconstructMultiIndex (const MI &mi, MO &&mo=Modify_change_nothing())
	Template used to reconstruct multi-index. More...
template<typename I >
auto	rangeInserter (const I f, const I s, boost::function< bool(I it)> tester, boost::function< MoFEMErrorCode(I f, I s)> inserter)
	Insert ranges. More...
void	tet_type_6 (moab::Interface &moab, const EntityHandle *conn, const EntityHandle *edge_new_nodes, EntityHandle *new_tets_conn)
int	tet_type_5 (moab::Interface &moab, const EntityHandle *conn, const EntityHandle *edge_new_nodes, EntityHandle *new_tets_conn)
int	tet_type_4 (const EntityHandle *conn, const int *split_edges, const EntityHandle *edge_new_nodes, EntityHandle *new_tets_conn)
int	tet_type_3 (const EntityHandle *conn, const int *split_edges, const EntityHandle *edge_new_nodes, EntityHandle *new_tets_conn)
int	tet_type_2 (const EntityHandle *conn, const int *split_edges, const EntityHandle *edge_new_nodes, EntityHandle *new_tets_conn)
void	tet_type_1 (const EntityHandle *conn, const int split_edge, const EntityHandle edge_new_node, EntityHandle *new_tets_conn)
MoFEMErrorCode	tri_type_1 (const EntityHandle *conn, const int split_edge, const EntityHandle edge_new_node, EntityHandle *new_tris_conn)
MoFEMErrorCode	tri_type_2 (const EntityHandle *conn, const int *split_edges, const EntityHandle *edge_new_nodes, EntityHandle *new_tris_conn)
MoFEMErrorCode	tri_type_3 (const EntityHandle *conn, const EntityHandle *edge_new_nodes, EntityHandle *new_tris_conn)
MoFEMErrorCode	prism_type_1 (const EntityHandle *conn, const BitRefEdges split_edges, const EntityHandle *edge_new_nodes, EntityHandle *new_prism_conn)
MoFEMErrorCode	prism_type_2 (const EntityHandle *conn, const BitRefEdges split_edges, const EntityHandle *edge_new_nodes, EntityHandle *new_prism_conn)
MoFEMErrorCode	prism_type_3 (const EntityHandle *conn, const BitRefEdges split_edges, const EntityHandle *edge_new_nodes, EntityHandle *new_prism_conn)
MoFEMErrorCode	quad_split_all_edges (const EntityHandle *conn, const EntityHandle *edge_new_nodes, EntityHandle *new_quad_conn)
MoFEMErrorCode	Hcurl_Ainsworth_EdgeBaseFunctions_MBTET (int *sense, int *p, double *N, double *diffN, double *edgeN[], double *diff_edgeN[], int nb_integration_pts, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
	Edge based H-curl base functions on tetrahedral. More...
MoFEMErrorCode	Hcurl_Ainsworth_EdgeBaseFunctions_MBTET_ON_EDGE (int sense, int p, double *N, double *diffN, double *edgeN, double *diff_edgeN, int nb_integration_pts, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
	Edge based H-curl base functions on edge. More...
MoFEMErrorCode	Hcurl_Ainsworth_EdgeBaseFunctions_MBTET_ON_FACE (int *sense, int *p, double *N, double *diffN, double *edgeN[], double *diff_edgeN[], int nb_integration_pts, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
	Edge based H-curl base functions on face. More...
MoFEMErrorCode	Hcurl_Ainsworth_EdgeBasedFaceFunctions_MBTET (int *faces_nodes, int *p, double *N, double *diffN, double *phi_f_e[4][3], double *diff_phi_f_e[4][3], int nb_integration_pts, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
	Face edge base functions of Hcurl space on tetrahedral. More...
MoFEMErrorCode	Hcurl_Ainsworth_EdgeBasedFaceFunctions_MBTET_ON_FACE (int *faces_nodes, int p, double *N, double *diffN, double *phi_f_e[3], double *diff_phi_f_e[3], int nb_integration_pts, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
	Face edge base functions of Hcurl space. More...
MoFEMErrorCode	Hcurl_Ainsworth_BubbleFaceFunctions_MBTET (int *faces_nodes, int *p, double *N, double *diffN, double *phi_f[4], double *diff_phi_f[4], int nb_integration_pts, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
	Face edge base functions of Hcurl space on face on tetrahedral. More...
MoFEMErrorCode	Hcurl_Ainsworth_BubbleFaceFunctions_MBTET_ON_FACE (int *faces_nodes, int p, double *N, double *diffN, double *phi_f, double *diff_phi_f, int nb_integration_pts, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
	Face edge base functions of Hcurl space on face. More...
MoFEMErrorCode	Hcurl_Ainsworth_FaceInteriorFunctions_MBTET (int *faces_nodes, int p, double *N, double *diffN, double *phi_v, double *diff_phi_v, int nb_integration_pts, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
	Face base interior function. More...
MoFEMErrorCode	Hcurl_Ainsworth_VolumeInteriorFunctions_MBTET (int p, double *N, double *diffN, double *phi_v, double *diff_phi_v, int nb_integration_pts, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
	Volume interior function. More...
MoFEMErrorCode	Hcurl_Ainsworth_FaceFunctions_MBTET (int *face_nodes, int *p, double *N, double *diffN, double *phi_f[4], double *diff_phi_f[4], int nb_integration_pts, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
	Face H-curl functions. More...
MoFEMErrorCode	Hcurl_Ainsworth_FaceFunctions_MBTET_ON_FACE (int *faces_nodes, int p, double *N, double *diffN, double *phi_f, double *diff_phi_f, int nb_integration_pts, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
	Face H-curl functions. More...
MoFEMErrorCode	Hcurl_Ainsworth_VolumeFunctions_MBTET (int p, double *N, double *diffN, double *phi_v, double *diff_phi_v, int nb_integration_pts, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
	H-curl volume base functions. More...
MoFEMErrorCode	Hcurl_Demkowicz_EdgeBaseFunctions_MBTET (int *sense, int *p, double *n, double *diff_n, double *phi[], double *diff_phi[], int nb_integration_pts)
	Edge based H-curl base functions on tetrahedral. More...
MoFEMErrorCode	Hcurl_Demkowicz_EdgeBaseFunctions_MBTRI (int *sense, int *p, double *n, double *diff_n, double *phi[], double *diff_phi[], int nb_integration_pts)
	Edge based H-curl base functions on teriangle. More...
MoFEMErrorCode	Hcurl_Demkowicz_EdgeBaseFunctions_MBEDGE (int sense, int p, double *n, double *diff_n, double *phi, double *diff_phi, int nb_integration_pts)
	Edge based H-curl base functions on edge. More...
MoFEMErrorCode	Hcurl_Demkowicz_FaceBaseFunctions_MBTET (int *faces_nodes, int *p, double *n, double *diff_n, double *phi[], double *diff_phi[], int nb_integration_pts)
	Face base interior function. More...
MoFEMErrorCode	Hcurl_Demkowicz_FaceBaseFunctions_MBTRI (int *faces_nodes, int p, double *n, double *diff_n, double *phi, double *diff_phi, int nb_integration_pts)
	Face base interior function. More...
MoFEMErrorCode	Hcurl_Demkowicz_VolumeBaseFunctions_MBTET (int p, double *n, double *diff_n, double *phi, double *diff_phi, int nb_integration_pts)
	Volume base interior function. More...
MoFEMErrorCode	Hdiv_Ainsworth_EdgeFaceShapeFunctions_MBTET (int *faces_nodes, int *p, double *N, double *diffN, double *phi_f_e[4][3], double *diff_phi_f_e[4][3], int gdim, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
	Hdiv base functions, Edge-based face functions by Ainsworth [1]. More...
MoFEMErrorCode	Hdiv_Ainsworth_EdgeFaceShapeFunctions_MBTET_ON_FACE (int *faces_nodes, int p, double *N, double *diffN, double *phi_f_e[3], double *diff_phi_f_e[3], int gdim, int nb, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
	Hdiv base functions, Edge-based face functions by Ainsworth [1]. More...
MoFEMErrorCode	Hdiv_Ainsworth_FaceBubbleShapeFunctions (int *faces_nodes, int *p, double *N, double *diffN, double *phi_f[], double *diff_phi_f[], int gdim, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
	Face bubble functions by Ainsworth [1]. More...
MoFEMErrorCode	Hdiv_Ainsworth_FaceBubbleShapeFunctions_ON_FACE (int *faces_nodes, int p, double *N, double *diffN, double *phi_f, double *diff_phi_f, int gdim, int nb, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
	Face bubble functions by Ainsworth [1]. More...
MoFEMErrorCode	Hdiv_Ainsworth_EdgeBasedVolumeShapeFunctions_MBTET (int p, double *N, double *diffN, double *phi_v_e[6], double *diff_phi_v_e[6], int gdim, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
	Hdiv base function, Edge-based interior (volume) functions by Ainsworth [1]. More...
MoFEMErrorCode	Hdiv_Ainsworth_FaceBasedVolumeShapeFunctions_MBTET (int p, double *N, double *diffN, double *phi_v_f[], double *diff_phi_v_f[], int gdim, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
MoFEMErrorCode	Hdiv_Ainsworth_VolumeBubbleShapeFunctions_MBTET (int p, double *N, double *diffN, double *phi_v, double *diff_phi_v, int gdim, PetscErrorCode(*base_polynomials)(int p, double s, double *diff_s, double *L, double *diffL, const int dim))
	Interior bubble functions by Ainsworth [1]. More...
MoFEMErrorCode	Hdiv_Demkowicz_Face_MBTET_ON_FACE (int *faces_nodes, int p, double *N, double *diffN, double *phi_f, double *diff_phi_f, int gdim, int nb)
MoFEMErrorCode	Hdiv_Demkowicz_Interior_MBTET (int p, double *N, double *diffN, int p_face[], double *phi_f[4], double *diff_phi_f[4], double *phi_v, double *diff_phi_v, int gdim)
MoFEMErrorCode	quad_split_all_edges (const EntityHandle *conn, const BitRefEdges split_edges, const EntityHandle *edge_new_nodes, EntityHandle *new_quad_conn)
template<class TYPE >
static MoFEMErrorCode	get_value (MatrixDouble &pts_x, MatrixDouble &pts_t, TYPE *ctx)
template<typename T = EntityStorage>
MoFEMErrorCode	VecSetValues (Vec V, const EntitiesFieldData::EntData &data, const double *ptr, InsertMode iora)
	Assemble PETSc vector. More...
template<>
MoFEMErrorCode	VecSetValues< EntityStorage > (Vec V, const EntitiesFieldData::EntData &data, const double *ptr, InsertMode iora)
template<typename T = EntityStorage>
MoFEMErrorCode	MatSetValues (Mat M, const EntitiesFieldData::EntData &row_data, const EntitiesFieldData::EntData &col_data, const double *ptr, InsertMode iora)
	Assemble PETSc matrix. More...
template<>
MoFEMErrorCode	MatSetValues< EntityStorage > (Mat M, const EntitiesFieldData::EntData &row_data, const EntitiesFieldData::EntData &col_data, const double *ptr, InsertMode iora)
template<>
MoFEMErrorCode	VecSetValues< EssentialBcStorage > (Vec V, const EntitiesFieldData::EntData &data, const double *ptr, InsertMode iora)
	Set values to vector in operator. More...
template<>
MoFEMErrorCode	MatSetValues< EssentialBcStorage > (Mat M, const EntitiesFieldData::EntData &row_data, const EntitiesFieldData::EntData &col_data, const double *ptr, InsertMode iora)
	Set values to matrix in operator. More...
template<typename E >
MoFEMErrorCode	addHOOpsVol (const std::string field, E &e, bool h1, bool hcurl, bool hdiv, bool l2)
template<typename E >
MoFEMErrorCode	addHOOpsFace3D (const std::string field, E &e, bool hcurl, bool hdiv)
static void	constructor_data (EntitiesFieldData *data, const EntityType type)
static void	constructor_derived_data (DerivedEntitiesFieldData *derived_data, const boost::shared_ptr< EntitiesFieldData > &data_ptr)
std::ostream &	operator<< (std::ostream &os, const EntitiesFieldData::EntData &e)
std::ostream &	operator<< (std::ostream &os, const EntitiesFieldData &e)
static auto	cmp_uid_lo (const boost::weak_ptr< FieldEntity > &a, const UId &b)
static auto	cmp_uid_hi (const UId &b, const boost::weak_ptr< FieldEntity > &a)
template<typename ENTMULTIINDEX >
static int	getMaxOrder (const ENTMULTIINDEX &multi_index)
template<class T >
static auto	get_sub_iface_options_imp (T *const ptr, int) -> decltype(ptr->getSubInterfaceOptions())
template<class T >
static auto	get_sub_iface_options_imp (T *const ptr, long) -> MoFEMErrorCode
template<int V, typename std::enable_if<(V >=0), int >::type * = nullptr>
void	set_ref_ent_basic_data_ptr_impl (boost::shared_ptr< BasicEntityData > &ptr)
std::ostream &	operator<< (std::ostream &strm, const LogManager::SeverityLevel &level)
static std::vector< med_geometrie_element >	moab2med_element_type (const EntityType type)
std::ostream &	operator<< (std::ostream &os, const MedInterface::FieldData &field_data)
static auto	min_non_abs (const double a, const double b)
std::ostream &	operator<< (std::ostream &os, const FENumeredDofEntity &e)
std::ostream &	operator<< (std::ostream &os, const DisplacementCubitBcData &e)
std::ostream &	operator<< (std::ostream &os, const ForceCubitBcData &e)
std::ostream &	operator<< (std::ostream &os, const VelocityCubitBcData &e)
std::ostream &	operator<< (std::ostream &os, const AccelerationCubitBcData &e)
std::ostream &	operator<< (std::ostream &os, const TemperatureCubitBcData &e)
std::ostream &	operator<< (std::ostream &os, const PressureCubitBcData &e)
std::ostream &	operator<< (std::ostream &os, const HeatFluxCubitBcData &e)
std::ostream &	operator<< (std::ostream &os, const CfgCubitBcData &e)
std::ostream &	operator<< (std::ostream &os, const CubitMeshSets &e)
std::ostream &	operator<< (std::ostream &os, const DofEntity &e)
std::ostream &	operator<< (std::ostream &os, const NumeredDofEntity &e)
std::ostream &	operator<< (std::ostream &os, const FEDofEntity &e)
std::ostream &	operator<< (std::ostream &os, const FiniteElement &e)
std::ostream &	operator<< (std::ostream &os, const EntFiniteElement &e)
std::ostream &	operator<< (std::ostream &os, const NumeredEntFiniteElement &e)
template<typename ENTSVIEW , typename DOFSVIEW , typename EXTRACTOR , typename INSERTER >
static MoFEMErrorCode	get_cache_data_dofs_view (ENTSVIEW &ents_view, DOFSVIEW &dofs_view, EXTRACTOR &&extractor, INSERTER &&inserter)
std::ostream &	operator<< (std::ostream &os, const FieldEntity &e)
std::ostream &	operator<< (std::ostream &os, const Field &e)
std::ostream &	operator<< (std::ostream &os, const FieldEntityEntFiniteElementAdjacencyMap &e)
std::ostream &	operator<< (std::ostream &os, const BlockSetAttributes &e)
std::ostream &	operator<< (std::ostream &os, const Mat_Elastic &e)
std::ostream &	operator<< (std::ostream &os, const Mat_Elastic_EberleinHolzapfel1 &e)
std::ostream &	operator<< (std::ostream &os, const Mat_Thermal &e)
std::ostream &	operator<< (std::ostream &os, const Mat_Moisture &e)
std::ostream &	operator<< (std::ostream &os, const Block_BodyForces &e)
std::ostream &	operator<< (std::ostream &os, const Mat_Elastic_TransIso &e)
std::ostream &	operator<< (std::ostream &os, const Mat_Interf &e)
std::ostream &	operator<< (std::ostream &os, const Problem &e)
std::ostream &	operator<< (std::ostream &os, const RefElement &e)
std::ostream &	operator<< (std::ostream &os, const RefElementVolume &e)
std::ostream &	operator<< (std::ostream &os, const RefElementFace &e)
std::ostream &	operator<< (std::ostream &os, const RefElement_EDGE &e)
std::ostream &	operator<< (std::ostream &os, const RefElement_VERTEX &e)
std::ostream &	operator<< (std::ostream &os, const RefEntity &e)
std::ostream &	operator<< (std::ostream &os, const FieldSeries &e)
std::ostream &	operator<< (std::ostream &os, const FieldSeriesStep &e)
template<EntityType TYPE>
EntityHandle	get_id_for_max_type ()
template<EntityType TYPE>
EntityHandle	get_id_for_min_type ()
EntityHandle	get_id_for_max_type (const EntityType type)
EntityHandle	get_id_for_min_type (const EntityType type)
void *	get_tag_ptr (moab::Interface &moab, Tag th, EntityHandle ent, int *tag_size)
	Get the tag ptr object. More...
PetscErrorCode	DMRegister_MoFEM (const char sname[])
	Register MoFEM problem. More...
PetscErrorCode	DMMoFEMCreateMoFEM (DM dm, MoFEM::Interface *m_field_ptr, const char problem_name[], const MoFEM::BitRefLevel bit_level, const MoFEM::BitRefLevel bit_mask=MoFEM::BitRefLevel().set())
	Must be called by user to set MoFEM data structures. More...
PetscErrorCode	DMMoFEMDuplicateDMCtx (DM dm, DM dm_duplicate)
	Duplicate internal data struture. More...
PetscErrorCode	DMMoFEMCreateSubDM (DM subdm, DM dm, const char problem_name[])
	Must be called by user to set Sub DM MoFEM data structures. More...
PetscErrorCode	DMoFEMGetInterfacePtr (DM dm, MoFEM::Interface **m_field_ptr)
	Get pointer to MoFEM::Interface. More...
PetscErrorCode	DMMoFEMGetProblemPtr (DM dm, const MoFEM::Problem **problem_ptr)
	Get pointer to problem data structure. More...
PetscErrorCode	DMMoFEMSetDestroyProblem (DM dm, PetscBool destroy_problem)
PetscErrorCode	DMMoFEMGetDestroyProblem (DM dm, PetscBool *destroy_problem)
PetscErrorCode	DMMoFEMSetSquareProblem (DM dm, PetscBool square_problem)
	set squared problem More...
PetscErrorCode	DMMoFEMGetSquareProblem (DM dm, PetscBool *square_problem)
	get squared problem More...
PetscErrorCode	DMMoFEMResolveSharedFiniteElements (DM dm, const char fe_name[])
	Resolve shared entities. More...
DEPRECATED PetscErrorCode	DMMoFEMResolveSharedEntities (DM dm, const char fe_name[])
PetscErrorCode	DMMoFEMGetProblemFiniteElementLayout (DM dm, const char fe_name[], PetscLayout *layout)
	Get finite elements layout in the problem. More...
PetscErrorCode	DMMoFEMAddElement (DM dm, const char fe_name[])
	add element to dm More...
PetscErrorCode	DMMoFEMUnSetElement (DM dm, const char fe_name[])
	unset element from dm More...
PetscErrorCode	DMoFEMMeshToLocalVector (DM dm, Vec l, InsertMode mode, ScatterMode scatter_mode)
	set local (or ghosted) vector values on mesh for partition only More...
PetscErrorCode	DMoFEMMeshToGlobalVector (DM dm, Vec g, InsertMode mode, ScatterMode scatter_mode)
	set ghosted vector values on all existing mesh entities More...
PetscErrorCode	DMoFEMPreProcessFiniteElements (DM dm, MoFEM::FEMethod *method)
	execute finite element method for each element in dm (problem) More...
PetscErrorCode	DMoFEMPostProcessFiniteElements (DM dm, MoFEM::FEMethod *method)
	execute finite element method for each element in dm (problem) More...
PetscErrorCode	DMoFEMLoopFiniteElementsUpAndLowRank (DM dm, const char fe_name[], MoFEM::FEMethod *method, int low_rank, int up_rank, CacheTupleWeakPtr cache_ptr=CacheTupleSharedPtr())
	Executes FEMethod for finite elements in DM. More...
PetscErrorCode	DMoFEMLoopFiniteElementsUpAndLowRank (DM dm, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, int low_rank, int up_rank, CacheTupleWeakPtr cache_ptr=CacheTupleSharedPtr())
	Executes FEMethod for finite elements in DM. More...
PetscErrorCode	DMoFEMLoopFiniteElements (DM dm, const char fe_name[], MoFEM::FEMethod *method, CacheTupleWeakPtr cache_ptr=CacheTupleSharedPtr())
	Executes FEMethod for finite elements in DM. More...
PetscErrorCode	DMoFEMLoopFiniteElements (DM dm, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, CacheTupleWeakPtr cache_ptr=CacheTupleSharedPtr())
	Executes FEMethod for finite elements in DM. More...
PetscErrorCode	DMoFEMLoopDofs (DM dm, const char field_name[], MoFEM::DofMethod *method)
	execute method for dofs on field in problem More...
PetscErrorCode	DMMoFEMKSPSetComputeRHS (DM dm, const char fe_name[], MoFEM::FEMethod *method, MoFEM::BasicMethod *pre_only, MoFEM::BasicMethod *post_only)
	set KSP right hand side evaluation function More...
PetscErrorCode	DMMoFEMKSPSetComputeRHS (DM dm, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, boost::shared_ptr< MoFEM::BasicMethod > pre_only, boost::shared_ptr< MoFEM::BasicMethod > post_only)
	set KSP right hand side evaluation function More...
PetscErrorCode	DMMoFEMKSPSetComputeOperators (DM dm, const char fe_name[], MoFEM::FEMethod *method, MoFEM::BasicMethod *pre_only, MoFEM::BasicMethod *post_only)
	Set KSP operators and push mofem finite element methods. More...
PetscErrorCode	DMMoFEMKSPSetComputeOperators (DM dm, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, boost::shared_ptr< MoFEM::BasicMethod > pre_only, boost::shared_ptr< MoFEM::BasicMethod > post_only)
	Set KSP operators and push mofem finite element methods. More...
PetscErrorCode	DMMoFEMSNESSetFunction (DM dm, const char fe_name[], MoFEM::FEMethod *method, MoFEM::BasicMethod *pre_only, MoFEM::BasicMethod *post_only)
	set SNES residual evaluation function More...
PetscErrorCode	DMMoFEMSNESSetFunction (DM dm, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, boost::shared_ptr< MoFEM::BasicMethod > pre_only, boost::shared_ptr< MoFEM::BasicMethod > post_only)
	set SNES residual evaluation function More...
PetscErrorCode	DMMoFEMSNESSetJacobian (DM dm, const char fe_name[], MoFEM::FEMethod *method, MoFEM::BasicMethod *pre_only, MoFEM::BasicMethod *post_only)
	set SNES Jacobian evaluation function More...
PetscErrorCode	DMMoFEMSNESSetJacobian (DM dm, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, boost::shared_ptr< MoFEM::BasicMethod > pre_only, boost::shared_ptr< MoFEM::BasicMethod > post_only)
	set SNES Jacobian evaluation function More...
PetscErrorCode	DMMoFEMTSSetIFunction (DM dm, const char fe_name[], MoFEM::FEMethod *method, MoFEM::BasicMethod *pre_only, MoFEM::BasicMethod *post_only)
	set TS implicit function evaluation function More...
PetscErrorCode	DMMoFEMTSSetIFunction (DM dm, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, boost::shared_ptr< MoFEM::BasicMethod > pre_only, boost::shared_ptr< MoFEM::BasicMethod > post_only)
	set TS implicit function evaluation function More...
PetscErrorCode	DMMoFEMTSSetIJacobian (DM dm, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, boost::shared_ptr< MoFEM::BasicMethod > pre_only, boost::shared_ptr< MoFEM::BasicMethod > post_only)
	set TS Jacobian evaluation function More...
PetscErrorCode	DMMoFEMTSSetIJacobian (DM dm, const char fe_name[], MoFEM::FEMethod *method, MoFEM::BasicMethod *pre_only, MoFEM::BasicMethod *post_only)
	set TS Jacobian evaluation function More...
PetscErrorCode	DMMoFEMTSSetRHSFunction (DM dm, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, boost::shared_ptr< MoFEM::BasicMethod > pre_only, boost::shared_ptr< MoFEM::BasicMethod > post_only)
	set TS the right hand side function More...
PetscErrorCode	DMMoFEMTSSetRHSJacobian (DM dm, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, boost::shared_ptr< MoFEM::BasicMethod > pre_only, boost::shared_ptr< MoFEM::BasicMethod > post_only)
	set TS the right hand side jacobian More...
PetscErrorCode	DMMoFEMTSSetI2Function (DM dm, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, boost::shared_ptr< MoFEM::BasicMethod > pre_only, boost::shared_ptr< MoFEM::BasicMethod > post_only)
	set TS implicit function evaluation function More...
PetscErrorCode	DMMoFEMTSSetI2Function (DM dm, const char fe_name[], MoFEM::FEMethod *method, MoFEM::BasicMethod *pre_only, MoFEM::BasicMethod *post_only)
	set TS implicit function evaluation function More...
PetscErrorCode	DMMoFEMTSSetI2Jacobian (DM dm, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, boost::shared_ptr< MoFEM::BasicMethod > pre_only, boost::shared_ptr< MoFEM::BasicMethod > post_only)
	set TS Jacobian evaluation function More...
PetscErrorCode	DMMoFEMTSSetI2Jacobian (DM dm, const char fe_name[], MoFEM::FEMethod *method, MoFEM::BasicMethod *pre_only, MoFEM::BasicMethod *post_only)
	set TS Jacobian evaluation function More...
PetscErrorCode	DMMoFEMTSSetMonitor (DM dm, TS ts, const std::string fe_name, boost::shared_ptr< MoFEM::FEMethod > method, boost::shared_ptr< MoFEM::BasicMethod > pre_only, boost::shared_ptr< MoFEM::BasicMethod > post_only)
	Set Monitor To TS solver. More...
PetscErrorCode	DMMoFEMTSSetMonitor (DM dm, TS ts, const char fe_name[], MoFEM::FEMethod *method, MoFEM::BasicMethod *pre_only, MoFEM::BasicMethod *post_only)
	Set Monitor To TS solver. More...
PetscErrorCode	DMMoFEMGetKspCtx (DM dm, MoFEM::KspCtx **ksp_ctx)
	get MoFEM::KspCtx data structure More...
PetscErrorCode	DMMoFEMGetKspCtx (DM dm, const boost::shared_ptr< MoFEM::KspCtx > &ksp_ctx)
	get MoFEM::KspCtx data structure More...
PetscErrorCode	DMMoFEMSetKspCtx (DM dm, boost::shared_ptr< MoFEM::KspCtx > ksp_ctx)
	set MoFEM::KspCtx data structure More...
PetscErrorCode	DMMoFEMGetSnesCtx (DM dm, MoFEM::SnesCtx **snes_ctx)
	get MoFEM::SnesCtx data structure More...
PetscErrorCode	DMMoFEMGetSnesCtx (DM dm, const boost::shared_ptr< MoFEM::SnesCtx > &snes_ctx)
	get MoFEM::SnesCtx data structure More...
PetscErrorCode	DMMoFEMSetSnesCtx (DM dm, boost::shared_ptr< MoFEM::SnesCtx > snes_ctx)
	Set MoFEM::SnesCtx data structure. More...
PetscErrorCode	DMMoFEMGetTsCtx (DM dm, MoFEM::TsCtx **ts_ctx)
	get MoFEM::TsCtx data structure More...
PetscErrorCode	DMMoFEMGetTsCtx (DM dm, const boost::shared_ptr< MoFEM::TsCtx > &ts_ctx)
	get MoFEM::TsCtx data structure More...
PetscErrorCode	DMMoFEMSetTsCtx (DM dm, boost::shared_ptr< MoFEM::TsCtx > ts_ctx)
	Set MoFEM::TsCtx data structure. More...
PetscErrorCode	DMMoFEMSetIsPartitioned (DM dm, PetscBool is_partitioned)
PetscErrorCode	DMMoFEMGetIsPartitioned (DM dm, PetscBool *is_partitioned)
PetscErrorCode	DMSetOperators_MoFEM (DM dm)
	Set operators for MoFEM dm. More...
PetscErrorCode	DMCreate_MoFEM (DM dm)
	Create dm data structure with MoFEM data structure. More...
PetscErrorCode	DMDestroy_MoFEM (DM dm)
	Destroys dm with MoFEM data structure. More...
PetscErrorCode	DMCreateGlobalVector_MoFEM (DM dm, Vec *g)
	DMShellSetCreateGlobalVector. More...
PetscErrorCode	DMCreateGlobalVector_MoFEM (DM dm, SmartPetscObj< Vec > &g_ptr)
	DMShellSetCreateGlobalVector. More...
PetscErrorCode	DMCreateLocalVector_MoFEM (DM dm, Vec *l)
	DMShellSetCreateLocalVector. More...
PetscErrorCode	DMCreateMatrix_MoFEM (DM dm, Mat *M)
PetscErrorCode	DMCreateMatrix_MoFEM (DM dm, SmartPetscObj< Mat > &M)
PetscErrorCode	DMSetFromOptions_MoFEM (DM dm)
PetscErrorCode	DMSetUp_MoFEM (DM dm)
PetscErrorCode	DMSubDMSetUp_MoFEM (DM subdm)
PetscErrorCode	DMMoFEMAddSubFieldRow (DM dm, const char field_name[], EntityType lo_type=MBVERTEX, EntityType hi_type=MBMAXTYPE)
PetscErrorCode	DMMoFEMAddSubFieldCol (DM dm, const char field_name[], EntityType lo_type=MBVERTEX, EntityType hi_type=MBMAXTYPE)
PetscErrorCode	DMMoFEMGetIsSubDM (DM dm, PetscBool *is_sub_dm)
PetscErrorCode	DMMoFEMGetSubRowIS (DM dm, IS *is)
	get sub problem is More...
PetscErrorCode	DMMoFEMGetSubColIS (DM dm, IS *is)
	get sub problem is More...
PetscErrorCode	DMMoFEMAddRowCompositeProblem (DM dm, const char prb_name[])
	Add problem to composite DM on row. More...
PetscErrorCode	DMMoFEMAddColCompositeProblem (DM dm, const char prb_name[])
	Add problem to composite DM on col. More...
PetscErrorCode	DMMoFEMGetIsCompDM (DM dm, PetscBool *is_comp_dm)
	Get if this DM is composite DM. More...
PetscErrorCode	DMGlobalToLocalBegin_MoFEM (DM dm, Vec, InsertMode, Vec)
PetscErrorCode	DMGlobalToLocalEnd_MoFEM (DM dm, Vec, InsertMode, Vec)
PetscErrorCode	DMLocalToGlobalBegin_MoFEM (DM, Vec, InsertMode, Vec)
PetscErrorCode	DMLocalToGlobalEnd_MoFEM (DM, Vec, InsertMode, Vec)
PetscErrorCode	DMCreateFieldIS_MoFEM (DM dm, PetscInt *numFields, char ***fieldNames, IS **fields)
PetscErrorCode	DMMoFEMGetFieldIS (DM dm, RowColData rc, const char field_name[], IS *is)
	get field is in the problem More...
PetscErrorCode	DMMoFEMSetVerbosity (DM dm, const int verb)
	Set verbosity level. More...
DEPRECATED auto	smartCreateDMDVector (DM dm)
template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode	DMMoFEMKSPSetComputeRHS (DM dm, S fe_name, T0 method, T1 pre_only, T2 post_only)
template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode	DMMoFEMKSPSetComputeOperators (DM dm, S fe_name, T0 method, T1 pre_only, T2 post_only)
template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode	DMMoFEMSNESSetFunction (DM dm, S fe_name, T0 method, T1 pre_only, T2 post_only)
template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode	DMMoFEMSNESSetJacobian (DM dm, S fe_name, T0 method, T1 pre_only, T2 post_only)
template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode	DMMoFEMTSSetIFunction (DM dm, S fe_name, T0 method, T1 pre_only, T2 post_only)
template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode	DMMoFEMTSSetIJacobian (DM dm, S fe_name, T0 method, T1 pre_only, T2 post_only)
template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode	DMMoFEMTSSetRHSFunction (DM dm, S fe_name, T0 method, T1 pre_only, T2 post_only)
template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode	DMMoFEMTSSetRHSJacobian (DM dm, S fe_name, T0 method, T1 pre_only, T2 post_only)
template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode	DMMoFEMTSSetI2Function (DM dm, S fe_name, T0 method, T1 pre_only, T2 post_only)
template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode	DMMoFEMTSSetI2Jacobian (DM dm, S fe_name, T0 method, T1 pre_only, T2 post_only)
template<class S , class T0 , class T1 , class T2 >
static PetscErrorCode	DMMoFEMTSSetMonitor (DM dm, TS ts, S fe_name, T0 method, T1 pre_only, T2 post_only)
PetscErrorCode	KspRhs (KSP ksp, Vec f, void *ctx)
	Run over elements in the lists. More...
PetscErrorCode	KspMat (KSP ksp, Mat A, Mat B, void *ctx)
	Run over elenents in the list. More...
PetscErrorCode	SnesRhs (SNES snes, Vec x, Vec f, void *ctx)
	This is MoFEM implementation for the right hand side (residual vector) evaluation in SNES solver. More...
PetscErrorCode	SnesMat (SNES snes, Vec x, Mat A, Mat B, void *ctx)
	This is MoFEM implementation for the left hand side (tangent matrix) evaluation in SNES solver. More...
MoFEMErrorCode	SnesMoFEMSetAssemblyType (SNES snes, MatAssemblyType type)
	Set assembly type at the end of SnesMat. More...
MoFEMErrorCode	SnesMoFEMSetBehavior (SNES snes, MoFEMTypes bh)
	Set behavior if finite element in sequence does not exist. More...
PetscErrorCode	TsSetIFunction (TS ts, PetscReal t, Vec u, Vec u_t, Vec F, void *ctx)
	Set IFunction for TS solver. More...
PetscErrorCode	TsSetIJacobian (TS ts, PetscReal t, Vec u, Vec u_t, PetscReal a, Mat A, Mat B, void *ctx)
	Set function evaluating jacobina in TS solver. More...
PetscErrorCode	TsMonitorSet (TS ts, PetscInt step, PetscReal t, Vec u, void *ctx)
	Set monitor for TS solver. More...
PetscErrorCode	TsSetRHSFunction (TS ts, PetscReal t, Vec u, Vec F, void *ctx)
	TS solver function. More...
PetscErrorCode	TsSetRHSJacobian (TS ts, PetscReal t, Vec u, Mat A, Mat B, void *ctx)
	TS solver function. More...
PetscErrorCode	TsSetI2Jacobian (TS ts, PetscReal t, Vec u, Vec u_t, Vec u_tt, PetscReal a, PetscReal aa, Mat A, Mat B, void *ctx)
	Calculation Jaconian for second order PDE in time. More...
PetscErrorCode	TsSetI2Function (TS ts, PetscReal t, Vec u, Vec u_t, Vec u_tt, Vec F, void *ctx)
	Calculation the right hand side for second order PDE in time. More...
DEPRECATED PetscErrorCode	f_TSSetIFunction (TS ts, PetscReal t, Vec u, Vec u_t, Vec F, void *ctx)
	\deprecate Do not use, change to TsSetIFunction More...
DEPRECATED PetscErrorCode	f_TSSetIJacobian (TS ts, PetscReal t, Vec u, Vec u_t, PetscReal a, Mat A, Mat B, void *ctx)
DEPRECATED PetscErrorCode	f_TSMonitorSet (TS ts, PetscInt step, PetscReal t, Vec u, void *ctx)
MoFEMErrorCode	set_plastic_ep_dm (MoFEM::Interface &m_field, SmartPetscObj< DM > &dm, SmartPetscObj< DM > &dm_plastic)
MoFEMErrorCode	set_plastic_tau_dm (MoFEM::Interface &m_field, SmartPetscObj< DM > &dm, SmartPetscObj< DM > &dm_plastic_tau)
MoFEMErrorCode	set_contact_dm (MoFEM::Interface &m_field, SmartPetscObj< DM > &dm, SmartPetscObj< DM > &dm_contact)

Variables
DEPRECATED typedef EntitiesFieldData	DataForcesAndSourcesCore
DEPRECATED typedef DerivedEntitiesFieldData	DerivedDataForcesAndSourcesCore
DEPRECATED typedef FlatPrismElementForcesAndSourcesCore	FlatPrismElementForcesAndSurcesCore
	USe FlatPrismElementForcesAndSourcesCore. More...
DEPRECATED typedef ForcesAndSourcesCore	ForcesAndSurcesCore
DEPRECATED typedef DofMethod	EntMethod
const EntityHandle	no_handle
	No entity handle is indicated by zero handle, i.e. root meshset. More...
auto	createSmartDM
	Creates smart DM object. More...
auto	createSmartGhostVector
	Create smart ghost vector. More...
auto	createSmartVectorMPI
	Create MPI Vector. More...
auto	createTS
auto	createSNES
auto	createKSP
auto	createPC
auto	get_temp_meshset_ptr
	Create smart pointer to temprary meshset. More...
auto	type_from_handle
	get type from entity handle More...
auto	dimension_from_handle
	get entity dimension form handle More...
auto	field_bit_from_bit_number
	get field bit id from bit number More...
static constexpr int	edges_conn [] = {0, 1, 1, 2, 2, 0, 0, 3, 1, 3, 2, 3}
static constexpr int	oposite_edge [] = {5, 3, 4, 1, 2, 0}
static constexpr int	edge_permutations [6][6]
static constexpr int	edge_mirror_cross [6] = {0, 3, 4, 1, 2, 5}
static constexpr int	edge_mirror_vertical [6] = {0, 4, 3, 2, 1, 5}
static constexpr int	cyclic_node_rotate_face_3 [3][4]
static constexpr int	cyclic_edge_rotate_face_3 [3][6]
static constexpr char	edge_bits_mark [] = {1, 2, 4, 8, 16, 32}
Tag	th
Field_multiIndex::index< FieldName_mi_tag >::type::iterator	field_it
VectorDouble	L
VectorDouble	K
static char	dummy_file
auto	smartCreateDMMatrix
	Get smart matrix from DM. More...
auto	smartCreateDMVector
	Get smart vector from DM. More...
auto	smartGetDMKspCtx
	Get KSP context data structure used by DM. More...
auto	smartGetDMSnesCtx
	Get SNES context data structure used by DM. More...
auto	smartGetDMTsCtx
	Get TS context data structure used by DM. More...
boost::weak_ptr< BlockMatContainer >	block_mat_container_ptr

Detailed Description

implementation of Data Operators for Forces and Sources

name space of MoFEM library functions and classes

MoFEM is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

MoFEM is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.

You should have received a copy of the GNU Lesser General Public License along with MoFEM. If not, see http://www.gnu.org/licenses/

file DataOperators.cpp

Typedef Documentation

BaseDerivatives

using MoFEM::BaseDerivatives = typedef EntitiesFieldData::EntData::BaseDerivatives

Definition at line 1112 of file EntitiesFieldData.hpp.

BasicMethodsSequence

typedef std::deque<BasicMethodPtr> MoFEM::BasicMethodsSequence

Definition at line 65 of file AuxPETSc.hpp.

BlockMatContainer

typedef multi_index_container< BlockMatData, indexed_by< ordered_unique< composite_key< BlockMatData, member<BlockMatData, std::string, &BlockMatData::rowField>, member<BlockMatData, std::string, &BlockMatData::colField>, member<BlockMatData, EntityType, &BlockMatData::rowType>, member<BlockMatData, EntityType, &BlockMatData::colType>, member<BlockMatData, int, &BlockMatData::rowSide>, member<BlockMatData, int, &BlockMatData::colSide> > >, ordered_non_unique< composite_key< BlockMatData, member<BlockMatData, std::string, &BlockMatData::rowField>, member<BlockMatData, std::string, &BlockMatData::colField>, member<BlockMatData, EntityType, &BlockMatData::rowType>, member<BlockMatData, EntityType, &BlockMatData::colType> > >, ordered_non_unique< composite_key< BlockMatData, member<BlockMatData, std::string, &BlockMatData::rowField>, member<BlockMatData, std::string, &BlockMatData::colField> > >, ordered_non_unique< member<BlockMatData, std::string, &BlockMatData::rowField> >, ordered_non_unique< member<BlockMatData, std::string, &BlockMatData::colField> > > > MoFEM::BlockMatContainer

Definition at line 129 of file BlockMatData.hpp.

BoundaryEle

using MoFEM::BoundaryEle = typedef FaceElementForcesAndSourcesCore

Definition at line 135 of file MultifieldPlasticity.hpp.

BoundaryEleOp

using MoFEM::BoundaryEleOp = typedef BoundaryEle::UserDataOperator

Examples

simple_l2_only.cpp.

Definition at line 136 of file MultifieldPlasticity.hpp.

BoundaryEleOpAssembly

using MoFEM::BoundaryEleOpAssembly = typedef FormsIntegrators<BoundaryEleOp>::Assembly<USER_ASSEMBLE>::OpBase

Definition at line 137 of file MultifieldPlasticity.hpp.

CacheTuple

using MoFEM::CacheTuple = typedef std::tuple< std::vector<EntityCacheDofs>, std::vector<EntityCacheNumeredDofs>, std::vector<EntityCacheNumeredDofs> >

Definition at line 497 of file FEMultiIndices.hpp.

CacheTupleSharedPtr

using MoFEM::CacheTupleSharedPtr = typedef boost::shared_ptr<CacheTuple>

Definition at line 505 of file FEMultiIndices.hpp.

CacheTupleWeakPtr

using MoFEM::CacheTupleWeakPtr = typedef boost::weak_ptr<CacheTuple>

Definition at line 504 of file FEMultiIndices.hpp.

ConstantFun

using MoFEM::ConstantFun = typedef boost::function<double()>

Constant function type.

Definition at line 123 of file FormsIntegrators.hpp.

Core

using MoFEM::Core = typedef CoreTmp<0>

Examples

add_blockset.cpp, add_cubit_meshsets.cpp, analytical_nonlinear_poisson.cpp, analytical_poisson.cpp, analytical_poisson_field_split.cpp, approx_sphere.cpp, bernstein_bezier_generate_base.cpp, bone_adaptation.cpp, boundary_marker.cpp, build_large_problem.cpp, build_problems.cpp, cell_forces.cpp, child_and_parent.cpp, contact.cpp, continuity_check_on_contact_prism_side_ele.cpp, continuity_check_on_skeleton_3d.cpp, continuity_check_on_skeleton_with_simple_2d_for_h1.cpp, continuity_check_on_skeleton_with_simple_2d_for_hcurl.cpp, continuity_check_on_skeleton_with_simple_2d_for_hdiv.cpp, cubit_bc_test.cpp, delete_ho_nodes.cpp, dm_build_partitioned_mesh.cpp, dm_create_subdm.cpp, dm_partitioned_no_field.cpp, edge_and_bubble_shape_functions_on_quad.cpp, eigen_elastic.cpp, elasticity.cpp, elasticity_mixed_formulation.cpp, ep.cpp, field_blas.cpp, field_evaluator.cpp, field_to_vertices.cpp, forces_and_sources_testing_edge_element.cpp, forces_and_sources_testing_flat_prism_element.cpp, forces_and_sources_testing_users_base.cpp, free_surface.cpp, gauss_points_on_outer_product.cpp, hanging_node_approx.cpp, hcurl_check_approx_in_2d.cpp, hcurl_curl_operator.cpp, hcurl_divergence_operator_2d.cpp, hdiv_divergence_operator.cpp, heat_equation.cpp, heat_method.cpp, hello_world.cpp, helmholtz.cpp, hertz_surface.cpp, higher_derivatives.cpp, log.cpp, loop_entities.cpp, lorentz_force.cpp, magnetostatic.cpp, mesh_cut.cpp, mesh_insert_interface_atom.cpp, mesh_smoothing.cpp, meshset_to_vtk.cpp, minimal_surface_area.cpp, mixed_poisson.cpp, mortar_contact.cpp, mortar_contact_thermal.cpp, navier_stokes.cpp, nonlinear_dynamics.cpp, nonlinear_elastic.cpp, partition_mesh.cpp, phase.cpp, photon_diffusion.cpp, plastic.cpp, plate.cpp, plot_base.cpp, poisson_2d_dis_galerkin.cpp, prism_elements_from_surface.cpp, prism_polynomial_approximation.cpp, quad_polynomial_approximation.cpp, reaction_diffusion.cpp, remove_entities_from_problem.cpp, remove_entities_from_problem_not_partitioned.cpp, scalar_check_approximation.cpp, shallow_wave.cpp, simple_contact.cpp, simple_contact_thermal.cpp, simple_elasticity.cpp, simple_interface.cpp, simple_l2_only.cpp, split_sideset.cpp, test_cache_on_entities.cpp, test_jacobian_of_simple_contact_element.cpp, testing_jacobian_of_hook_element.cpp, testing_jacobian_of_hook_scaled_with_density_element.cpp, thermo_plastic.cpp, unsaturated_transport.cpp, wave_equation.cpp, and wavy_surface.cpp.

Definition at line 1096 of file Core.hpp.

CubitMeshSet_multiIndex

MoFEM::CubitMeshSet_multiIndex

Stores data about meshsets (see CubitMeshSets) storing data about boundary conditions, interfaces, sidesets, nodests, blocksets.

Parameters

Meshset_mi_tag	index by meshset handle
CubitMeshsetType_mi_tag	index by bc type, see CubitBC
CubitMeshsetMaskedType_mi_tag	index by NODESET, SIDESET, BLOCKSET only
CubitMeshsets_name	index by meshset name
Composite_Cubit_msId_And_MeshsetType_mi_tag	index by meshset id and type NODESET, SIDESET or BLOCKSET

Example:

  MeshsetsManager *m_mng;
  CHKERR m_field.getInterface(m_mng);
  auto &index = m_mng->getMeshsetsMultindex();
 
 
  auto mit =
index.get<CubitMeshsetMaskedType_mi_tag>().lower_bound(BLOCKSET); auto
hi_mit =
index.get<CubitMeshsetMaskedType_mi_tag>().upper_bound(BLOCKSET);
 
  // Make a loop over all BLOCKSET
  for(;mit!=hi_mit;mit++) {
    int id = mit->getMeshsetId();            // get blockset id
    EntityHandle handle = mit->getMeshset(); // get block meshset
    std::vector< double > attributes;
    // get block attributes
    auto mit->getAttributes(attributes);
    // do something
  }

Definition at line 393 of file BCMultiIndices.hpp.

CubitMeshsetById

typedef CubitMeshSet_multiIndex::index<CubitMeshsetType_mi_tag>::type MoFEM::CubitMeshsetById

Definition at line 34 of file MeshsetsManager.hpp.

CubitMeshsetByMask

typedef CubitMeshSet_multiIndex::index<CubitMeshsetMaskedType_mi_tag>::type MoFEM::CubitMeshsetByMask

Definition at line 28 of file MeshsetsManager.hpp.

CubitMeshsetByName

typedef CubitMeshSet_multiIndex::index<CubitMeshsets_name>::type MoFEM::CubitMeshsetByName

Definition at line 31 of file MeshsetsManager.hpp.

CubitMeshsetByType

typedef CubitMeshSet_multiIndex::index<CubitMeshsetType_mi_tag>::type MoFEM::CubitMeshsetByType

Definition at line 25 of file MeshsetsManager.hpp.

DofEntityByUId

using MoFEM::DofEntityByUId = typedef DofEntity_multiIndex::index<Unique_mi_tag>::type

Definition at line 333 of file DofsMultiIndices.hpp.

DofsAllocator

using MoFEM::DofsAllocator = typedef ublas::unbounded_array< FEDofEntity *, std::allocator<FEDofEntity *> >

Definition at line 29 of file EntitiesFieldData.hpp.

DomainEle

using MoFEM::DomainEle = typedef VolumeElementForcesAndSourcesCore

Definition at line 125 of file MultifieldPlasticity.hpp.

DomainEleOp

using MoFEM::DomainEleOp = typedef DomainEle::UserDataOperator

Examples

child_and_parent.cpp, and simple_l2_only.cpp.

Definition at line 126 of file MultifieldPlasticity.hpp.

DomainEleOpAssembly

using MoFEM::DomainEleOpAssembly = typedef FormsIntegrators<DomainEleOp>::Assembly<USER_ASSEMBLE>::OpBase

Definition at line 127 of file MultifieldPlasticity.hpp.

DomainSideEle

using MoFEM::DomainSideEle = typedef VolumeElementForcesAndSourcesCoreOnSide

Definition at line 140 of file MultifieldPlasticity.hpp.

DomainSideEleOp

using MoFEM::DomainSideEleOp = typedef DomainSideEle::UserDataOperator

Definition at line 141 of file MultifieldPlasticity.hpp.

DomainSideEleOpAssembly

using MoFEM::DomainSideEleOpAssembly = typedef FormsIntegrators<DomainSideEleOp>::Assembly<USER_ASSEMBLE>::OpBase

Definition at line 142 of file MultifieldPlasticity.hpp.

EmptyFieldBlocks

typedef Problem::EmptyFieldBlocks MoFEM::EmptyFieldBlocks

Definition at line 578 of file ProblemsMultiIndices.hpp.

EntData

using MoFEM::EntData = typedef DataForcesAndSourcesCore::EntData

Definition at line 123 of file MultifieldPlasticity.hpp.

FEMethodsSequence

typedef std::deque<PairNameFEMethodPtr> MoFEM::FEMethodsSequence

Definition at line 64 of file AuxPETSc.hpp.

Field_multiIndex_view

typedef multi_index_container< boost::shared_ptr<Field>, indexed_by< ordered_unique<tag<BitFieldId_mi_tag>, const_mem_fun<Field, const BitFieldId &, &Field::getId>, LtBit<BitFieldId> > > > MoFEM::Field_multiIndex_view

Definition at line 518 of file FieldMultiIndices.hpp.

FieldEntAllocator

using MoFEM::FieldEntAllocator = typedef ublas::unbounded_array< FieldEntity *, std::allocator<FieldEntity *> >

Definition at line 37 of file EntitiesFieldData.hpp.

FieldEntity_multiIndex

using MoFEM::FieldEntity_multiIndex = typedef multi_index_container< boost::shared_ptr<FieldEntity>, indexed_by< ordered_unique<tag<Unique_mi_tag>, member<FieldEntity, UId, &FieldEntity::localUId> >, ordered_non_unique<tag<Ent_mi_tag>, const_mem_fun<FieldEntity::interface_type_RefEntity, EntityHandle, &FieldEntity::getEnt> > > >

Definition at line 473 of file FieldEntsMultiIndices.hpp.

FieldEntity_multiIndex_ent_view

using MoFEM::FieldEntity_multiIndex_ent_view = typedef multi_index_container< boost::shared_ptr<FieldEntity>, indexed_by< sequenced<>, ordered_non_unique<tag<Ent_mi_tag>, const_mem_fun<FieldEntity::interface_type_RefEntity, EntityHandle, &FieldEntity::getEnt> > > >

Definition at line 439 of file FieldEntsMultiIndices.hpp.

FieldEntity_multiIndex_spaceType_view

using MoFEM::FieldEntity_multiIndex_spaceType_view = typedef multi_index_container< boost::shared_ptr<FieldEntity>, indexed_by< sequenced<>, ordered_non_unique< tag<Composite_EntType_and_Space_mi_tag>, composite_key<FieldEntity, const_mem_fun<FieldEntity::interface_type_RefEntity, EntityType, &FieldEntity::getEntType>, const_mem_fun<FieldEntity::interface_type_Field, FieldSpace, &FieldEntity::getSpace> > > > >

Definition at line 451 of file FieldEntsMultiIndices.hpp.

FieldEntity_vector_view

typedef std::vector<boost::weak_ptr<FieldEntity> > MoFEM::FieldEntity_vector_view

Definition at line 471 of file FieldEntsMultiIndices.hpp.

Interface

using MoFEM::Interface = typedef DeprecatedCoreInterface

Examples

ElasticityMixedFormulation.hpp, HookeElement.hpp, HookeInternalStressElement.hpp, MagneticElement.hpp, NavierStokesElement.hpp, OpPostProcElastic.hpp, PlasticOps.hpp, PlasticOpsMonitor.hpp, Remodeling.cpp, Remodeling.hpp, UnsaturatedFlow.hpp, add_blockset.cpp, add_cubit_meshsets.cpp, analytical_nonlinear_poisson.cpp, analytical_poisson.cpp, analytical_poisson_field_split.cpp, approx_sphere.cpp, bernstein_bezier_generate_base.cpp, bone_adaptation.cpp, boundary_marker.cpp, build_large_problem.cpp, build_problems.cpp, cell_forces.cpp, child_and_parent.cpp, contact.cpp, continuity_check_on_contact_prism_side_ele.cpp, continuity_check_on_skeleton_3d.cpp, continuity_check_on_skeleton_with_simple_2d_for_h1.cpp, continuity_check_on_skeleton_with_simple_2d_for_hcurl.cpp, continuity_check_on_skeleton_with_simple_2d_for_hdiv.cpp, cubit_bc_test.cpp, delete_ho_nodes.cpp, dm_build_partitioned_mesh.cpp, dm_create_subdm.cpp, dm_partitioned_no_field.cpp, edge_and_bubble_shape_functions_on_quad.cpp, eigen_elastic.cpp, elasticity.cpp, elasticity_mixed_formulation.cpp, ep.cpp, field_blas.cpp, field_evaluator.cpp, field_to_vertices.cpp, forces_and_sources_testing_edge_element.cpp, forces_and_sources_testing_flat_prism_element.cpp, forces_and_sources_testing_users_base.cpp, free_surface.cpp, gauss_points_on_outer_product.cpp, hanging_node_approx.cpp, hcurl_check_approx_in_2d.cpp, hcurl_curl_operator.cpp, hcurl_divergence_operator_2d.cpp, hdiv_divergence_operator.cpp, heat_equation.cpp, heat_method.cpp, hello_world.cpp, helmholtz.cpp, hertz_surface.cpp, higher_derivatives.cpp, log.cpp, loop_entities.cpp, lorentz_force.cpp, magnetostatic.cpp, mesh_cut.cpp, mesh_insert_interface_atom.cpp, mesh_smoothing.cpp, meshset_to_vtk.cpp, minimal_surface_area.cpp, mixed_poisson.cpp, mortar_contact.cpp, mortar_contact_thermal.cpp, navier_stokes.cpp, nonlinear_dynamics.cpp, nonlinear_elastic.cpp, partition_mesh.cpp, phase.cpp, photon_diffusion.cpp, plastic.cpp, plate.cpp, plot_base.cpp, poisson_2d_dis_galerkin.cpp, prism_elements_from_surface.cpp, prism_polynomial_approximation.cpp, quad_polynomial_approximation.cpp, reaction_diffusion.cpp, remove_entities_from_problem.cpp, remove_entities_from_problem_not_partitioned.cpp, scalar_check_approximation.cpp, shallow_wave.cpp, simple_contact.cpp, simple_contact_thermal.cpp, simple_elasticity.cpp, simple_interface.cpp, simple_l2_only.cpp, split_sideset.cpp, test_cache_on_entities.cpp, test_jacobian_of_simple_contact_element.cpp, testing_jacobian_of_hook_element.cpp, testing_jacobian_of_hook_scaled_with_density_element.cpp, thermo_plastic.cpp, unsaturated_transport.cpp, wave_equation.cpp, and wavy_surface.cpp.

Definition at line 1965 of file Interface.hpp.

NumeredDofEntity_multiIndex_coeff_idx_ordered_non_unique

using MoFEM::NumeredDofEntity_multiIndex_coeff_idx_ordered_non_unique = typedef multi_index_container< boost::shared_ptr<NumeredDofEntity>, indexed_by<ordered_non_unique<const_mem_fun< NumeredDofEntity::interface_type_DofEntity, FieldCoefficientsNumber, &NumeredDofEntity::getDofCoeffIdx> >> >

Definition at line 530 of file DofsMultiIndices.hpp.

NumeredDofEntity_multiIndex_idx_view_hashed

using MoFEM::NumeredDofEntity_multiIndex_idx_view_hashed = typedef multi_index_container< boost::shared_ptr<NumeredDofEntity>, indexed_by<hashed_unique<const_mem_fun<NumeredDofEntity, DofIdx, &NumeredDofEntity::getDofIdx> >> >

Definition at line 519 of file DofsMultiIndices.hpp.

NumeredDofEntity_multiIndex_petsc_local_dof_view_ordered_non_unique

using MoFEM::NumeredDofEntity_multiIndex_petsc_local_dof_view_ordered_non_unique = typedef multi_index_container<boost::shared_ptr<NumeredDofEntity>, indexed_by<ordered_non_unique<const_mem_fun< NumeredDofEntity, DofIdx, &NumeredDofEntity::getPetscLocalDofIdx> >> >

Definition at line 524 of file DofsMultiIndices.hpp.

NumeredDofEntity_multiIndex_uid_view_ordered

using MoFEM::NumeredDofEntity_multiIndex_uid_view_ordered = typedef multi_index_container<boost::shared_ptr<NumeredDofEntity>, indexed_by< ordered_unique<const_mem_fun< NumeredDofEntity::interface_type_DofEntity, UId, &NumeredDofEntity::getLocalUniqueId > > > >

Definition at line 506 of file DofsMultiIndices.hpp.

OpCalculateHOJacForFace

using MoFEM::OpCalculateHOJacForFace = typedef OpCalculateHOJacForFaceImpl<2>

Examples

NavierStokesElement.cpp, cell_forces.cpp, contact.cpp, continuity_check_on_skeleton_with_simple_2d_for_hdiv.cpp, eigen_elastic.cpp, free_surface.cpp, hcurl_check_approx_in_2d.cpp, hcurl_divergence_operator_2d.cpp, heat_equation.cpp, helmholtz.cpp, higher_derivatives.cpp, minimal_surface_area.cpp, mixed_poisson.cpp, nonlinear_elastic.cpp, phase.cpp, plastic.cpp, plate.cpp, plot_base.cpp, poisson_2d_dis_galerkin.cpp, quad_polynomial_approximation.cpp, reaction_diffusion.cpp, scalar_check_approximation.cpp, thermo_plastic.cpp, and wave_equation.cpp.

Definition at line 240 of file HODataOperators.hpp.

OpCalculateHOJacForFaceEmbeddedIn3DSpace

using MoFEM::OpCalculateHOJacForFaceEmbeddedIn3DSpace = typedef OpCalculateHOJacForFaceImpl<3>

Examples

heat_method.cpp, and shallow_wave.cpp.

Definition at line 241 of file HODataOperators.hpp.

OpCalculateScalarFieldValuesDot

using MoFEM::OpCalculateScalarFieldValuesDot = typedef OpCalculateScalarFieldValuesFromPetscVecImpl<PetscData::CTX_SET_X_T>

Examples

free_surface.cpp, heat_equation.cpp, photon_diffusion.cpp, plastic.cpp, reaction_diffusion.cpp, shallow_wave.cpp, and thermo_plastic.cpp.

Definition at line 275 of file UserDataOperators.hpp.

OpCalculateScalarFieldValuesDotDot

using MoFEM::OpCalculateScalarFieldValuesDotDot = typedef OpCalculateScalarFieldValuesFromPetscVecImpl<PetscData::CTX_SET_X_TT>

Examples

wave_equation.cpp.

Definition at line 277 of file UserDataOperators.hpp.

OpCalculateScalarValuesDot

using MoFEM::OpCalculateScalarValuesDot = typedef OpCalculateScalarFieldValuesDot

\depreacted Name inconstent with other operators

Definition at line 284 of file UserDataOperators.hpp.

OpSetContrariantPiolaTransformOnEdge

using MoFEM::OpSetContrariantPiolaTransformOnEdge = typedef OpSetContravariantPiolaTransformOnEdge2D

Deprecated:

Name is deprecated and this is added for back compatibility

Definition at line 2893 of file UserDataOperators.hpp.

OpSetContravariantPiolaTransformOnFace2D

using MoFEM::OpSetContravariantPiolaTransformOnFace2D = typedef OpSetContravariantPiolaTransformOnFace2DImpl<2>

Examples

contact.cpp, continuity_check_on_skeleton_with_simple_2d_for_hdiv.cpp, hcurl_check_approx_in_2d.cpp, hcurl_divergence_operator_2d.cpp, mixed_poisson.cpp, phase.cpp, plot_base.cpp, and thermo_plastic.cpp.

Definition at line 2866 of file UserDataOperators.hpp.

OpSetContravariantPiolaTransformOnFace2DEmbeddedIn3DSpace

using MoFEM::OpSetContravariantPiolaTransformOnFace2DEmbeddedIn3DSpace = typedef OpSetContravariantPiolaTransformOnFace2DImpl<3>

Definition at line 2868 of file UserDataOperators.hpp.

OpSetInvJacHcurlFace

using MoFEM::OpSetInvJacHcurlFace = typedef OpSetInvJacHcurlFaceImpl<2>

Examples

cell_forces.cpp, contact.cpp, hcurl_check_approx_in_2d.cpp, hcurl_divergence_operator_2d.cpp, mixed_poisson.cpp, phase.cpp, and thermo_plastic.cpp.

Definition at line 2804 of file UserDataOperators.hpp.

OpSetInvJacHcurlFaceEmbeddedIn3DSpace

using MoFEM::OpSetInvJacHcurlFaceEmbeddedIn3DSpace = typedef OpSetInvJacHcurlFaceImpl<3>

Definition at line 2805 of file UserDataOperators.hpp.

RefElement_multiIndex_parents_view

typedef multi_index_container< boost::shared_ptr<RefElement>, indexed_by< ordered_unique<tag<Ent_mi_tag>, const_mem_fun<RefElement::interface_type_RefEntity, EntityHandle, &RefElement::getEnt> >, ordered_non_unique< tag<Ent_Ent_mi_tag>, const_mem_fun<RefElement::interface_type_RefEntity, EntityHandle, &RefElement::getParentEnt> >, ordered_non_unique< tag<Composite_ParentEnt_And_BitsOfRefinedEdges_mi_tag>, composite_key< RefElement, const_mem_fun<RefElement::interface_type_RefEntity, EntityHandle, &RefElement::getParentEnt>, const_mem_fun<RefElement, int, &RefElement::getBitRefEdgesUlong> > > > > MoFEM::RefElement_multiIndex_parents_view

Definition at line 41 of file MeshRefinement.cpp.

RefEntity

using MoFEM::RefEntity = typedef RefEntityTmp<0>

Definition at line 571 of file RefEntsMultiIndices.hpp.

RefEntity_multiIndex_view_by_ordered_parent_entity

using MoFEM::RefEntity_multiIndex_view_by_ordered_parent_entity = typedef multi_index_container< boost::shared_ptr<RefEntity>, indexed_by<ordered_non_unique<const_mem_fun<RefEntity, EntityHandle, &RefEntity::getParentEnt> >, hashed_unique< tag<Composite_EntType_and_ParentEntType_mi_tag>, composite_key<boost::shared_ptr<RefEntity>, const_mem_fun<RefEntity, EntityHandle, &RefEntity::getEnt>, const_mem_fun<RefEntity, EntityHandle, &RefEntity::getParentEnt> >> > >

Definition at line 784 of file RefEntsMultiIndices.hpp.

RefEntity_multiIndex_view_sequence_ordered_view

using MoFEM::RefEntity_multiIndex_view_sequence_ordered_view = typedef multi_index_container< boost::shared_ptr<RefEntity>, indexed_by< sequenced<>, ordered_unique<tag<Ent_mi_tag>, const_mem_fun<RefEntity, EntityHandle, &RefEntity::getEnt> >> >

Definition at line 799 of file RefEntsMultiIndices.hpp.

Sev

typedef LogManager::SeverityLevel MoFEM::Sev

Definition at line 27 of file CoreTemplates.hpp.

ShardVec

template<typename T >

using MoFEM::ShardVec = typedef boost::shared_ptr<std::vector<T> >

Definition at line 24 of file Templates.hpp.

SkeletonEle

using MoFEM::SkeletonEle = typedef FaceElementForcesAndSourcesCore

Definition at line 130 of file MultifieldPlasticity.hpp.

SkeletonEleOp

using MoFEM::SkeletonEleOp = typedef SkeletonEle::UserDataOperator

Definition at line 131 of file MultifieldPlasticity.hpp.

SkeletonEleOpAssembly

using MoFEM::SkeletonEleOpAssembly = typedef FormsIntegrators<SkeletonEleOp>::Assembly<USER_ASSEMBLE>::OpBase

Definition at line 132 of file MultifieldPlasticity.hpp.

VectorDofs

using MoFEM::VectorDofs = typedef ublas::vector<FEDofEntity *, DofsAllocator>

Examples

HookeElement.cpp.

Definition at line 35 of file EntitiesFieldData.hpp.

VectorFieldEntities

using MoFEM::VectorFieldEntities = typedef ublas::vector<FieldEntity *, FieldEntAllocator>

Definition at line 43 of file EntitiesFieldData.hpp.

VolumeElementForcesAndSourcesCoreOnContactPrismSide

using MoFEM::VolumeElementForcesAndSourcesCoreOnContactPrismSide = typedef VolumeElementForcesAndSourcesCoreOnContactPrismSideSwitch<0>

Volume element used to integrate on contact element (could be extended for other volume elements) mofem_forces_and_sources_volume_element.

Examples

continuity_check_on_contact_prism_side_ele.cpp.

Definition at line 163 of file VolumeElementForcesAndSourcesCoreOnContactPrismSide.hpp.

Function Documentation

addHOOpsFace3D()

template<typename E >

MoFEMErrorCode MoFEM::addHOOpsFace3D	(	const std::string	field,
		E &	e,
		bool	hcurl,
		bool	hdiv
	)

Examples

elasticity.cpp, mortar_contact_thermal.cpp, nonlinear_dynamics.cpp, simple_contact.cpp, and simple_contact_thermal.cpp.

Definition at line 495 of file HODataOperators.hpp.

                                         {
  MoFEMFunctionBegin;
  e.meshPositionsFieldName = "none";
  e.getOpPtrVector().push_back(new OpGetHONormalsOnFace(field));
  e.getOpPtrVector().push_back(new OpCalculateHOCoords(field));
  if (hcurl) {
    e.getOpPtrVector().push_back(
        new OpHOSetContravariantPiolaTransformOnFace3D(HDIV));
  }
  if (hdiv) {
    e.getOpPtrVector().push_back(
        new OpHOSetCovariantPiolaTransformOnFace3D(HDIV));
  }
  MoFEMFunctionReturn(0);
}

addHOOpsVol()

template<typename E >

MoFEMErrorCode MoFEM::addHOOpsVol	(	const std::string	field,
		E &	e,
		bool	h1,
		bool	hcurl,
		bool	hdiv,
		bool	l2
	)

Examples

HookeElement.cpp, MagneticElement.hpp, NonlinearElasticElementInterface.hpp, Remodeling.cpp, elasticity.cpp, navier_stokes.cpp, and nonlinear_dynamics.cpp.

Definition at line 462 of file HODataOperators.hpp.

                                               {
  MoFEMFunctionBegin;
  auto material_grad_mat = boost::make_shared<MatrixDouble>();
  auto material_det_vec = boost::make_shared<VectorDouble>();
  auto material_inv_grad_mat = boost::make_shared<MatrixDouble>();
  e.getOpPtrVector().push_back(
      new OpCalculateVectorFieldGradient<3, 3>(field, material_grad_mat));
  e.getOpPtrVector().push_back(new OpInvertMatrix<3>(
      material_grad_mat, material_det_vec, material_inv_grad_mat));
  e.getOpPtrVector().push_back(new OpSetHOWeights(material_det_vec));
  if (h1)
    e.getOpPtrVector().push_back(
        new OpSetHOInvJacToScalarBases(H1, material_inv_grad_mat));
  if (l2)
    e.getOpPtrVector().push_back(
        new OpSetHOInvJacToScalarBases(L2, material_inv_grad_mat));
  if (hdiv) {
    e.getOpPtrVector().push_back(new OpSetHOContravariantPiolaTransform(
        HDIV, material_det_vec, material_grad_mat));
    e.getOpPtrVector().push_back(
        new OpSetHOInvJacVectorBase(HDIV, material_inv_grad_mat));
  }
  if (hcurl) {
    e.getOpPtrVector().push_back(
        new OpSetHOCovariantPiolaTransform(HCURL, material_inv_grad_mat));
    e.getOpPtrVector().push_back(
        new OpSetHOInvJacVectorBase(HCURL, material_inv_grad_mat));
  }
  MoFEMFunctionReturn(0);
}

cmp_uid_hi()

static auto MoFEM::cmp_uid_hi ( const UId &  b, const boost::weak_ptr< FieldEntity > &  a  )

static

Definition at line 43 of file ForcesAndSourcesCore.cpp.

                                                                          {
  if (auto a_ptr = a.lock()) {
    if (b < a_ptr->getLocalUniqueId())
      return true;
    else
      return false;
  } else {
    return true;
  }
}

cmp_uid_lo()

static auto MoFEM::cmp_uid_lo ( const boost::weak_ptr< FieldEntity > &  a, const UId &  b  )

static

Definition at line 32 of file ForcesAndSourcesCore.cpp.

                                                                          {
  if (auto a_ptr = a.lock()) {
    if (a_ptr->getLocalUniqueId() < b)
      return true;
    else
      return false;
  } else {
    return false;
  }
}

computeEigenValuesSymmetric() [1/4]

template<int DIM>

MoFEMErrorCode MoFEM::computeEigenValuesSymmetric	(	const FTensor::Tensor2_symmetric< double, DIM > &	mat,
		FTensor::Tensor1< double, DIM > &	eig,
		FTensor::Tensor2< double, DIM, DIM > &	eigen_vec
	)

compute eigenvalues of a symmetric tensor using lapack dsyev

Template Parameters

DIM

Parameters

mat	input tensor of size DIM x DIM
eig	output eigen values sorted
eigen_vec	output matrix of row eigen vectors

Returns

MoFEMErrorCode

Definition at line 1141 of file Templates.hpp.

                                                                         {
  MoFEMFunctionBegin;
  for (int ii = 0; ii != DIM; ii++)
    for (int jj = 0; jj != DIM; jj++)
      eigen_vec(ii, jj) = mat(ii, jj);
 
  CHKERR computeEigenValuesSymmetric<DIM>(eigen_vec, eig);
 
  MoFEMFunctionReturn(0);
}

computeEigenValuesSymmetric() [2/4]

template<int DIM>

MoFEMErrorCode MoFEM::computeEigenValuesSymmetric	(	const FTensor::Tensor2_symmetric< FTensor::PackPtr< double *, 1 >, DIM > &	mat,
		FTensor::Tensor1< double, DIM > &	eig,
		FTensor::Tensor2< double, DIM, DIM > &	eigen_vec
	)

compute eigenvalues of a symmetric tensor using lapack dsyev

Template Parameters

DIM

Parameters

mat	input tensor pointer of size DIM x DIM
eig	output eigen values sorted
eigen_vec	output matrix of row eigen vectors

Returns

MoFEMErrorCode

Definition at line 1116 of file Templates.hpp.

                                                 {
  MoFEMFunctionBegin;
  for (int ii = 0; ii != DIM; ii++)
    for (int jj = 0; jj != DIM; jj++)
      eigen_vec(ii, jj) = mat(ii, jj);
 
  CHKERR computeEigenValuesSymmetric<DIM>(eigen_vec, eig);
 
  MoFEMFunctionReturn(0);
}

computeEigenValuesSymmetric() [3/4]

MoFEMErrorCode MoFEM::computeEigenValuesSymmetric	(	const MatrixDouble &	mat,
		VectorDouble &	eig,
		MatrixDouble &	eigen_vec
	)

compute eigenvalues of a symmetric matrix using lapack dsyev

Parameters

mat	input symmetric matrix
eig	output eigen values sorted
eigen_vec	output matrix of row eigen vectors

Returns

MoFEMErrorCode

Definition at line 1050 of file Templates.hpp.

                                                                           {
  MoFEMFunctionBegin;
 
  const size_t M = mat.size1();
  const size_t N = mat.size2();
 
  if (M == 0 || M != N)
    SETERRQ2(
        PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
        "The input matrix for eigen value computation is not square %d != %d",
        M, N);
  if (eig.size() != M)
    eig.resize(M, false);
 
  eigen_vec = mat;
  const int n = M;
  const int lda = M;
  const int size = (M + 2) * M;
  int lwork = size;
  double *work = new double[size];
 
  if (lapack_dsyev('V', 'U', n, &*eigen_vec.data().begin(), lda,
                   &*eig.data().begin(), work, lwork) > 0)
    SETERRQ(PETSC_COMM_SELF, MOFEM_INVALID_DATA,
            "The algorithm failed to compute eigenvalues.");
 
  delete[] work;
  MoFEMFunctionReturn(0);
}

computeEigenValuesSymmetric() [4/4]

template<int DIM>

MoFEMErrorCode MoFEM::computeEigenValuesSymmetric	(	FTensor::Tensor2< double, DIM, DIM > &	eigen_vec,
		FTensor::Tensor1< double, DIM > &	eig
	)

compute eigenvalues of a symmetric matrix using lapack dsyev

Template Parameters

DIM

Parameters

eigen_vec	input / output DIM x DIM matrix of row eigen vectors
eig	output eigen values sorted

Returns

MoFEMErrorCode

Definition at line 1091 of file Templates.hpp.

                                                              {
  MoFEMFunctionBegin;
 
  const int n = DIM;
  const int lda = DIM;
  const int lwork = (DIM + 2) * DIM;
  std::array<double, (DIM + 2) * DIM> work;
 
  if (lapack_dsyev('V', 'U', n, &eigen_vec(0, 0), lda, &eig(0), work.data(),
                   lwork) > 0)
    SETERRQ(PETSC_COMM_SELF, MOFEM_INVALID_DATA,
            "The algorithm failed to compute eigenvalues.");
  MoFEMFunctionReturn(0);
}

computeMatrixInverse()

MoFEMErrorCode MoFEM::computeMatrixInverse

(

MatrixDouble &

mat

)

compute matrix inverse with lapack dgetri

Parameters

mat	input square matrix / output inverse matrix

Returns

MoFEMErrorCode

Definition at line 963 of file Templates.hpp.

                                                              {
  MoFEMFunctionBegin;
 
  const size_t M = mat.size1();
  const size_t N = mat.size2();
 
  if (M != N)
    SETERRQ2(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
             "The input matrix for inverse computation is not square %d != %d",
             M, N);
 
  int *ipv = new int[N];
  int lwork = N * N;
  double *work = new double[lwork];
  int info;
  info = lapack_dgetrf(N, N, &*mat.data().begin(), N, ipv);
  if (info != 0)
    SETERRQ1(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
             "lapack error info = %d", info);
  info = lapack_dgetri(N, &*mat.data().begin(), N, ipv, work, lwork);
  if (info != 0)
    SETERRQ1(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
             "lapack error info = %d", info);
 
  delete[] ipv;
  delete[] work;
 
  MoFEMFunctionReturn(0);
}

constructor_data()

static void MoFEM::constructor_data ( EntitiesFieldData *  data, const EntityType  type  )

static

Definition at line 56 of file EntitiesFieldData.cpp.

                                                                             {
 
  using EntData = EntitiesFieldData::EntData;
 
  auto set_default = [&]() {
    std::array<size_t, MBMAXTYPE> count;
    std::fill(count.begin(), count.end(), 0);
    const int dim_type = moab::CN::Dimension(type);
    data->dataOnEntities[MBVERTEX].resize(1);
    if (type != MBVERTEX) {
      for (auto dd = dim_type; dd > 0; --dd) {
        int nb_ents = moab::CN::NumSubEntities(type, dd);
        for (int ii = 0; ii != nb_ents; ++ii) {
          auto sub_ent_type = moab::CN::SubEntityType(type, dd, ii);
          count[sub_ent_type] = nb_ents;
        }
        for (auto tt = moab::CN::TypeDimensionMap[dd].first;
             tt <= moab::CN::TypeDimensionMap[dd].second; ++tt) {
          data->dataOnEntities[tt].resize(count[tt]);
        }
      }
    }
  };
 
  switch (type) {
  case MBENTITYSET:
    break;
 
  default:
    set_default();
  }
}

constructor_derived_data()

static void MoFEM::constructor_derived_data ( DerivedEntitiesFieldData *  derived_data, const boost::shared_ptr< EntitiesFieldData > &  data_ptr  )

static

Definition at line 100 of file EntitiesFieldData.cpp.

                                                                             {
 
  using EntData = EntitiesFieldData::EntData;
  using DerivedEntData = DerivedEntitiesFieldData::DerivedEntData;
 
  for (int tt = MBVERTEX; tt != MBMAXTYPE; ++tt) {
    auto &ent_data = data_ptr->dataOnEntities[tt];
    auto &derived_ent_data = derived_data->dataOnEntities[tt];
    for (auto c = derived_ent_data.size(); c < ent_data.size(); ++c) {
      boost::shared_ptr<EntData> ent_data_ptr(data_ptr, &ent_data[c]);
      derived_ent_data.push_back(new DerivedEntData(ent_data_ptr));
    }
    derived_ent_data.resize(ent_data.size());
  }
}

determinantTensor2by2()

template<class T1 , class T2 >

MoFEMErrorCode MoFEM::determinantTensor2by2	(	T1 &	t,
		T2 &	det
	)

Calculate determinant 2 by 2.

Definition at line 1202 of file Templates.hpp.

                                                            {
  MoFEMFunctionBeginHot;
  det = t(0, 0) * t(1, 1) - t(0, 1) * t(1, 0);
  MoFEMFunctionReturnHot(0);
}

determinantTensor3by3() [1/2]

template<typename T >

static auto MoFEM::determinantTensor3by3 ( T &  t )

static

Calculate the determinant of a 3x3 matrix or a tensor of rank 2.

Template Parameters

T

Parameters

t

Returns

double

Examples

EshelbianOperators.cpp, EshelbianPlasticity.cpp, HookeElement.cpp, HookeElement.hpp, HookeInternalStressElement.hpp, NeoHookean.hpp, Remodeling.cpp, Remodeling.hpp, and lorentz_force.cpp.

Definition at line 1161 of file Templates.hpp.

                                                                     {
  return t(0, 0) * t(1, 1) * t(2, 2) + t(1, 0) * t(2, 1) * t(0, 2) +
         t(2, 0) * t(0, 1) * t(1, 2) - t(0, 0) * t(2, 1) * t(1, 2) -
         t(2, 0) * t(1, 1) * t(0, 2) - t(1, 0) * t(0, 1) * t(2, 2);
}

determinantTensor3by3() [2/2]

template<class T1 , class T2 >

MoFEMErrorCode MoFEM::determinantTensor3by3	(	T1 &	t,
		T2 &	det
	)

Calculate determinant 3 by 3.

Definition at line 1191 of file Templates.hpp.

                                                            {
  MoFEMFunctionBeginHot;
  det = determinantTensor3by3(t);
  MoFEMFunctionReturnHot(0);
}

DMMoFEMDuplicateDMCtx()

PetscErrorCode MoFEM::DMMoFEMDuplicateDMCtx	(	DM	dm,
		DM	dm_duplicate
	)

Duplicate internal data struture.

Parameters

dm
dm_duplicate

Returns

PetscErrorCode

Definition at line 196 of file DMMMoFEM.cpp.

                                                             {
  MoFEMFunctionBegin;
 
  auto *dm_field = static_cast<DMCtx *>(dm->data);
  if (!dm->data)
    SETERRQ(PETSC_COMM_SELF, MOFEM_NOT_IMPLEMENTED,
            "data structure for MoFEM not yet created");
 
  if (static_cast<DMCtx *>(dm_duplicate->data)->referenceNumber == 0)
    delete static_cast<DMCtx *>(dm_duplicate->data);
 
  dm_duplicate->data = dm->data;
  ++(static_cast<DMCtx *>(dm_duplicate->data)->referenceNumber);
 
  MoFEMFunctionReturn(0);
}

DMMoFEMGetDestroyProblem()

PetscErrorCode MoFEM::DMMoFEMGetDestroyProblem	(	DM	dm,
		PetscBool *	destroy_problem
	)

Get if problem will be destroyed with DM

Parameters

dm	the DM object
destroy	return if PETSC_TRUE problem is destroyed

Returns

error code

Definition at line 405 of file DMMMoFEM.cpp.

                                                                           {
  MoFEMFunctionBeginHot;
  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
  MoFEMFunctionBeginHot;
  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
  *destroy_problem = dm_field->destroyProblem;
  MoFEMFunctionReturnHot(0);
}

DMMoFEMGetSubColIS()

PetscErrorCode MoFEM::DMMoFEMGetSubColIS	(	DM	dm,
		IS *	is
	)

get sub problem is

Parameters

dm	has to be created with DMMoFEMSetSquareProblem
is	return is on the row

Returns

error code

Returns IS with global indices of the DM used to create SubDM

Definition at line 307 of file DMMMoFEM.cpp.

                                                 {
  MoFEMFunctionBegin;
  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
  MoFEMFunctionBeginHot;
  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
  if (dm_field->isSubDM != PETSC_TRUE) {
    SETERRQ(PETSC_COMM_SELF, MOFEM_NOT_IMPLEMENTED,
            "This DM is not created as a SubDM");
  }
  if (dm_field->isProblemBuild != PETSC_TRUE) {
    SETERRQ(PETSC_COMM_SELF, MOFEM_NOT_IMPLEMENTED, "Problem is not build");
  }
  boost::shared_ptr<Problem::SubProblemData> sub_data =
      dm_field->problemPtr->getSubData();
  CHKERR sub_data->getColIs(is);
  MoFEMFunctionReturn(0);
}

DMMoFEMGetSubRowIS()

PetscErrorCode MoFEM::DMMoFEMGetSubRowIS	(	DM	dm,
		IS *	is
	)

get sub problem is

Parameters

dm	has to be created with DMMoFEMSetSquareProblem
is	return is on the row

Returns

error code

Returns IS with global indices of the DM used to create SubDM

Examples

analytical_poisson_field_split.cpp.

Definition at line 289 of file DMMMoFEM.cpp.

                                                 {
  MoFEMFunctionBegin;
  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
  MoFEMFunctionBeginHot;
  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
  if (dm_field->isSubDM != PETSC_TRUE) {
    SETERRQ(PETSC_COMM_SELF, MOFEM_NOT_IMPLEMENTED,
            "This DM is not created as a SubDM");
  }
  if (dm_field->isProblemBuild != PETSC_TRUE) {
    SETERRQ(PETSC_COMM_SELF, MOFEM_NOT_IMPLEMENTED, "Problem is not build");
  }
  boost::shared_ptr<Problem::SubProblemData> sub_data =
      dm_field->problemPtr->getSubData();
  CHKERR sub_data->getRowIs(is);
  MoFEMFunctionReturn(0);
}

DMMoFEMKSPSetComputeOperators()

template<class S , class T0 , class T1 , class T2 >

static PetscErrorCode MoFEM::DMMoFEMKSPSetComputeOperators ( DM  dm, S  fe_name, T0  method, T1  pre_only, T2  post_only  )

static

Definition at line 617 of file DMMMoFEM.cpp.

                                                                               {
  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
  MoFEMFunctionBegin;
  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
  if (pre_only) {
    dm_field->kspCtx->get_preProcess_to_do_Mat().push_back(pre_only);
  }
  if (method) {
    dm_field->kspCtx->get_loops_to_do_Mat().push_back(
        PairNameFEMethodPtr(fe_name, method));
  }
  if (post_only) {
    dm_field->kspCtx->get_postProcess_to_do_Mat().push_back(post_only);
  }
  CHKERR DMKSPSetComputeOperators(dm, KspMat, dm_field->kspCtx.get());
  MoFEMFunctionReturn(0);
}

DMMoFEMKSPSetComputeRHS()

template<class S , class T0 , class T1 , class T2 >

static PetscErrorCode MoFEM::DMMoFEMKSPSetComputeRHS ( DM  dm, S  fe_name, T0  method, T1  pre_only, T2  post_only  )

static

Definition at line 576 of file DMMMoFEM.cpp.

                                                                         {
  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
  MoFEMFunctionBegin;
  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
  if (pre_only) {
    dm_field->kspCtx->get_preProcess_to_do_Rhs().push_back(pre_only);
  }
  if (method) {
    dm_field->kspCtx->get_loops_to_do_Rhs().push_back(
        PairNameFEMethodPtr(fe_name, method));
  }
  if (post_only) {
    dm_field->kspCtx->get_postProcess_to_do_Rhs().push_back(post_only);
  }
  CHKERR DMKSPSetComputeRHS(dm, KspRhs, dm_field->kspCtx.get());
  MoFEMFunctionReturn(0);
}

DMMoFEMResolveSharedEntities()

PetscErrorCode MoFEM::DMMoFEMResolveSharedEntities	(	DM	dm,
		const char	fe_name[]
	)

Deprecated:

Use DMMoFEMResolveSharedFiniteElements

Definition at line 433 of file DMMMoFEM.cpp.

                                                                         {
  return DMMoFEMResolveSharedFiniteElements(dm, fe_name);
}

DMMoFEMSetDestroyProblem()

PetscErrorCode MoFEM::DMMoFEMSetDestroyProblem	(	DM	dm,
		PetscBool	destroy_problem
	)

If this is set to PETSC_TRUE problem is deleted with DM

Parameters

dm	the DM object
destroy	if PETSC_TRUE problem is destroyed

Returns

error code

Examples

EshelbianPlasticity.cpp.

Definition at line 396 of file DMMMoFEM.cpp.

                                                                          {
  MoFEMFunctionBeginHot;
  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
  MoFEMFunctionBeginHot;
  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
  dm_field->destroyProblem = destroy_problem;
  MoFEMFunctionReturnHot(0);
}

DMMoFEMSetVerbosity()

PetscErrorCode MoFEM::DMMoFEMSetVerbosity	(	DM	dm,
		const int	verb
	)

Set verbosity level.

Parameters

dm
verb	see VERBOSITY_LEVELS for list of the levels

Returns

PetscErrorCode

Definition at line 1425 of file DMMMoFEM.cpp.

                                                          {
  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
  MoFEMFunctionBeginHot;
  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
  dm_field->verbosity = verb;
  MoFEMFunctionReturnHot(0);
}

DMMoFEMSNESSetFunction()

template<class S , class T0 , class T1 , class T2 >

static PetscErrorCode MoFEM::DMMoFEMSNESSetFunction ( DM  dm, S  fe_name, T0  method, T1  pre_only, T2  post_only  )

static

Definition at line 657 of file DMMMoFEM.cpp.

                                                                        {
  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
  MoFEMFunctionBegin;
  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
  if (pre_only) {
    dm_field->snesCtx->get_preProcess_to_do_Rhs().push_back(pre_only);
  }
  if (method) {
    dm_field->snesCtx->get_loops_to_do_Rhs().push_back(
        PairNameFEMethodPtr(fe_name, method));
  }
  if (post_only) {
    dm_field->snesCtx->get_postProcess_to_do_Rhs().push_back(post_only);
  }
  CHKERR DMSNESSetFunction(dm, SnesRhs, dm_field->snesCtx.get());
  MoFEMFunctionReturn(0);
}

DMMoFEMSNESSetJacobian()

template<class S , class T0 , class T1 , class T2 >

static PetscErrorCode MoFEM::DMMoFEMSNESSetJacobian ( DM  dm, S  fe_name, T0  method, T1  pre_only, T2  post_only  )

static

Definition at line 698 of file DMMMoFEM.cpp.

                                                                        {
  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
  MoFEMFunctionBegin;
  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
  if (pre_only) {
    dm_field->snesCtx->get_preProcess_to_do_Mat().push_back(pre_only);
  }
  if (method) {
    dm_field->snesCtx->get_loops_to_do_Mat().push_back(
        PairNameFEMethodPtr(fe_name, method));
  }
  if (post_only) {
    dm_field->snesCtx->get_postProcess_to_do_Mat().push_back(post_only);
  }
  CHKERR DMSNESSetJacobian(dm, SnesMat, dm_field->snesCtx.get());
  MoFEMFunctionReturn(0);
}

DMMoFEMTSSetI2Function()

template<class S , class T0 , class T1 , class T2 >

static PetscErrorCode MoFEM::DMMoFEMTSSetI2Function ( DM  dm, S  fe_name, T0  method, T1  pre_only, T2  post_only  )

static

Definition at line 883 of file DMMMoFEM.cpp.

                                                                        {
  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
  MoFEMFunctionBegin;
  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
  if (pre_only) {
    dm_field->tsCtx->getPreProcessIFunction().push_back(pre_only);
  }
  if (method) {
    dm_field->tsCtx->getLoopsIFunction().push_back(
        PairNameFEMethodPtr(fe_name, method));
  }
  if (post_only) {
    dm_field->tsCtx->getPostProcessIFunction().push_back(post_only);
  }
  CHKERR DMTSSetI2Function(dm, TsSetI2Function, dm_field->tsCtx.get());
  MoFEMFunctionReturn(0);
}

DMMoFEMTSSetI2Jacobian()

template<class S , class T0 , class T1 , class T2 >

static PetscErrorCode MoFEM::DMMoFEMTSSetI2Jacobian ( DM  dm, S  fe_name, T0  method, T1  pre_only, T2  post_only  )

static

Definition at line 926 of file DMMMoFEM.cpp.

                                                                        {
  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
  MoFEMFunctionBegin;
  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
  if (pre_only) {
    dm_field->tsCtx->getPreProcessIJacobian().push_back(pre_only);
  }
  if (method) {
    dm_field->tsCtx->getLoopsIJacobian().push_back(
        PairNameFEMethodPtr(fe_name, method));
  }
  if (post_only) {
    dm_field->tsCtx->getPostProcessIJacobian().push_back(post_only);
  }
  CHKERR DMTSSetI2Jacobian(dm, TsSetI2Jacobian, dm_field->tsCtx.get());
  MoFEMFunctionReturn(0);
}

DMMoFEMTSSetIFunction()

template<class S , class T0 , class T1 , class T2 >

static PetscErrorCode MoFEM::DMMoFEMTSSetIFunction ( DM  dm, S  fe_name, T0  method, T1  pre_only, T2  post_only  )

static

Definition at line 739 of file DMMMoFEM.cpp.

                                                                       {
  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
  MoFEMFunctionBegin;
  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
  if (pre_only) {
    dm_field->tsCtx->getPreProcessIFunction().push_back(pre_only);
  }
  if (method) {
    dm_field->tsCtx->getLoopsIFunction().push_back(
        PairNameFEMethodPtr(fe_name, method));
  }
  if (post_only) {
    dm_field->tsCtx->getPostProcessIFunction().push_back(post_only);
  }
  CHKERR DMTSSetIFunction(dm, TsSetIFunction, dm_field->tsCtx.get());
  MoFEMFunctionReturn(0);
}

DMMoFEMTSSetIJacobian()

template<class S , class T0 , class T1 , class T2 >

static PetscErrorCode MoFEM::DMMoFEMTSSetIJacobian ( DM  dm, S  fe_name, T0  method, T1  pre_only, T2  post_only  )

static

Definition at line 782 of file DMMMoFEM.cpp.

                                                                       {
  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
  MoFEMFunctionBegin;
  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
  if (pre_only) {
    dm_field->tsCtx->getPreProcessIJacobian().push_back(pre_only);
  }
  if (method) {
    dm_field->tsCtx->getLoopsIJacobian().push_back(
        PairNameFEMethodPtr(fe_name, method));
  }
  if (post_only) {
    dm_field->tsCtx->getPostProcessIJacobian().push_back(post_only);
  }
  CHKERR DMTSSetIJacobian(dm, TsSetIJacobian, dm_field->tsCtx.get());
  MoFEMFunctionReturn(0);
}

DMMoFEMTSSetMonitor() [1/3]

PetscErrorCode MoFEM::DMMoFEMTSSetMonitor	(	DM	dm,
		TS	ts,
		const char	fe_name[],
		MoFEM::FEMethod *	method,
		MoFEM::BasicMethod *	pre_only,
		MoFEM::BasicMethod *	post_only
	)

Set Monitor To TS solver.

See PETSc documentaton here

Parameters

dm
ts	time solver
fe_name
method
pre_only
post_only

Returns

PetscErrorCod

Definition at line 983 of file DMMMoFEM.cpp.

                                                                {
  return DMMoFEMTSSetMonitor<const char *, MoFEM::FEMethod *,
                             MoFEM::BasicMethod *, MoFEM::BasicMethod *>(
      dm, ts, fe_name, method, pre_only, post_only);
  MoFEMFunctionReturnHot(0);
}

DMMoFEMTSSetMonitor() [2/3]

PetscErrorCode MoFEM::DMMoFEMTSSetMonitor	(	DM	dm,
		TS	ts,
		const std::string	fe_name,
		boost::shared_ptr< MoFEM::FEMethod >	method,
		boost::shared_ptr< MoFEM::BasicMethod >	pre_only,
		boost::shared_ptr< MoFEM::BasicMethod >	post_only
	)

Set Monitor To TS solver.

See PETSc documentaton here

Parameters

dm
ts	time solver
fe_name
method
pre_only
post_only

Returns

PetscErrorCod

Examples

contact.cpp, free_surface.cpp, heat_equation.cpp, nonlinear_elastic.cpp, photon_diffusion.cpp, plastic.cpp, reaction_diffusion.cpp, shallow_wave.cpp, thermo_plastic.cpp, and wave_equation.cpp.

Definition at line 994 of file DMMMoFEM.cpp.

                                                                 {
  return DMMoFEMTSSetMonitor<const std::string,
                             boost::shared_ptr<MoFEM::FEMethod>,
                             boost::shared_ptr<MoFEM::BasicMethod>,
                             boost::shared_ptr<MoFEM::BasicMethod>>(
      dm, ts, fe_name, method, pre_only, post_only);
  MoFEMFunctionReturnHot(0);
}

DMMoFEMTSSetMonitor() [3/3]

template<class S , class T0 , class T1 , class T2 >

static PetscErrorCode MoFEM::DMMoFEMTSSetMonitor ( DM  dm, TS  ts, S  fe_name, T0  method, T1  pre_only, T2  post_only  )

static

Definition at line 967 of file DMMMoFEM.cpp.

                                                                     {
  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
  MoFEMFunctionBegin;
  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
  if (pre_only)
    dm_field->tsCtx->getPreProcessMonitor().push_back(pre_only);
  if (method)
    dm_field->tsCtx->getLoopsMonitor().push_back(
        PairNameFEMethodPtr(fe_name, method));
  if (post_only)
    dm_field->tsCtx->getPostProcessMonitor().push_back(post_only);
  CHKERR TSMonitorSet(ts, TsMonitorSet, dm_field->tsCtx.get(), PETSC_NULL);
  MoFEMFunctionReturn(0);
}

DMMoFEMTSSetRHSFunction() [1/2]

PetscErrorCode MoFEM::DMMoFEMTSSetRHSFunction	(	DM	dm,
		const std::string	fe_name,
		boost::shared_ptr< MoFEM::FEMethod >	method,
		boost::shared_ptr< MoFEM::BasicMethod >	pre_only,
		boost::shared_ptr< MoFEM::BasicMethod >	post_only
	)

set TS the right hand side function

See petsc documentation

Parameters

dm
fe_name
method
pre_only
post_only

Returns

PetscErrorCode

Examples

reaction_diffusion.cpp.

Definition at line 840 of file DMMMoFEM.cpp.

                                                                     {
  return DMMoFEMTSSetRHSFunction<const std::string,
                                 boost::shared_ptr<MoFEM::FEMethod>,
                                 boost::shared_ptr<MoFEM::BasicMethod>,
                                 boost::shared_ptr<MoFEM::BasicMethod>>(
      dm, fe_name, method, pre_only, post_only);
  MoFEMFunctionReturnHot(0);
}

DMMoFEMTSSetRHSFunction() [2/2]

template<class S , class T0 , class T1 , class T2 >

static PetscErrorCode MoFEM::DMMoFEMTSSetRHSFunction ( DM  dm, S  fe_name, T0  method, T1  pre_only, T2  post_only  )

static

Definition at line 823 of file DMMMoFEM.cpp.

                                                                         {
  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
  MoFEMFunctionBegin;
  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
  if (pre_only)
    dm_field->tsCtx->getPreProcessRHSFunction().push_back(pre_only);
  if (method)
    dm_field->tsCtx->getLoopsRHSFunction().push_back(
        PairNameFEMethodPtr(fe_name, method));
  if (post_only)
    dm_field->tsCtx->getPostProcessRHSFunction().push_back(post_only);
  CHKERR DMTSSetRHSFunction(dm, TsSetRHSFunction, dm_field->tsCtx.get());
  MoFEMFunctionReturn(0);
}

DMMoFEMTSSetRHSJacobian() [1/2]

PetscErrorCode MoFEM::DMMoFEMTSSetRHSJacobian	(	DM	dm,
		const std::string	fe_name,
		boost::shared_ptr< MoFEM::FEMethod >	method,
		boost::shared_ptr< MoFEM::BasicMethod >	pre_only,
		boost::shared_ptr< MoFEM::BasicMethod >	post_only
	)

set TS the right hand side jacobian

See petsc documentation

Parameters

dm
fe_name
method
pre_only
post_only

Returns

PetscErrorCode

Definition at line 870 of file DMMMoFEM.cpp.

                                                                     {
  return DMMoFEMTSSetRHSJacobian<const std::string,
                                 boost::shared_ptr<MoFEM::FEMethod>,
                                 boost::shared_ptr<MoFEM::BasicMethod>,
                                 boost::shared_ptr<MoFEM::BasicMethod>>(
      dm, fe_name, method, pre_only, post_only);
  MoFEMFunctionReturnHot(0);
}

DMMoFEMTSSetRHSJacobian() [2/2]

template<class S , class T0 , class T1 , class T2 >

static PetscErrorCode MoFEM::DMMoFEMTSSetRHSJacobian ( DM  dm, S  fe_name, T0  method, T1  pre_only, T2  post_only  )

static

Definition at line 853 of file DMMMoFEM.cpp.

                                                                         {
  PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
  MoFEMFunctionBegin;
  DMCtx *dm_field = static_cast<DMCtx *>(dm->data);
  if (pre_only)
    dm_field->tsCtx->getPreProcessRHSFunction().push_back(pre_only);
  if (method)
    dm_field->tsCtx->getLoopsRHSFunction().push_back(
        PairNameFEMethodPtr(fe_name, method));
  if (post_only)
    dm_field->tsCtx->getPostProcessRHSFunction().push_back(post_only);
  CHKERR DMTSSetRHSJacobian(dm, TsSetRHSJacobian, dm_field->tsCtx.get());
  MoFEMFunctionReturn(0);
}

f_TSMonitorSet()

DEPRECATED PetscErrorCode MoFEM::f_TSMonitorSet	(	TS	ts,
		PetscInt	step,
		PetscReal	t,
		Vec	u,
		void *	ctx
	)

Deprecated:

Do not use, change to TsMonitorSet

Examples

Remodeling.cpp.

Definition at line 312 of file TsCtx.hpp.

                                                                               {
  return TsMonitorSet(ts, step, t, u, ctx);
}

f_TSSetIFunction()

DEPRECATED PetscErrorCode MoFEM::f_TSSetIFunction	(	TS	ts,
		PetscReal	t,
		Vec	u,
		Vec	u_t,
		Vec	F,
		void *	ctx
	)

\deprecate Do not use, change to TsSetIFunction

Definition at line 299 of file TsCtx.hpp.

                                                                             {
  return TsSetIFunction(ts, t, u, u_t, F, ctx);
}

f_TSSetIJacobian()

DEPRECATED PetscErrorCode MoFEM::f_TSSetIJacobian	(	TS	ts,
		PetscReal	t,
		Vec	u,
		Vec	u_t,
		PetscReal	a,
		Mat	A,
		Mat	B,
		void *	ctx
	)

Deprecated:

Do not use, change to TsSetIJacobian

Definition at line 305 of file TsCtx.hpp.

                                                                    {
  return TsSetIJacobian(ts, t, u, u_t, a, A, B, ctx);
}

get_cache_data_dofs_view()

template<typename ENTSVIEW , typename DOFSVIEW , typename EXTRACTOR , typename INSERTER >

static MoFEMErrorCode MoFEM::get_cache_data_dofs_view ( ENTSVIEW &  ents_view, DOFSVIEW &  dofs_view, EXTRACTOR &&  extractor, INSERTER &&  inserter  )

static

Definition at line 512 of file FEMultiIndices.cpp.

                                                                     {
  MoFEMFunctionBeginHot;
 
  auto hint = dofs_view->end();
  using ValType = typename std::remove_reference<decltype(**hint)>::type;
 
  for (auto &it : *ents_view) {
    if (auto e = it.lock()) {
 
      if (auto cache = extractor(e).lock())
        for (auto dit = cache->loHi[0]; dit != cache->loHi[1]; ++dit)
          hint = inserter(dofs_view, hint,
                          boost::reinterpret_pointer_cast<ValType>(*dit));
      else
        SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY, "Cache not set");
    }
  }
 
  MoFEMFunctionReturnHot(0);
}

get_id_for_max_type() [1/2]

template<EntityType TYPE>

EntityHandle MoFEM::get_id_for_max_type

(

)

Definition at line 26 of file RefEntsMultiIndices.hpp.

                                                                     {
  return (static_cast<EntityHandle>(TYPE) << MB_ID_WIDTH) |
         (~static_cast<EntityHandle>(MB_TYPE_MASK));
};

get_id_for_max_type() [2/2]

EntityHandle MoFEM::get_id_for_max_type

(

const EntityType

type

)

Definition at line 35 of file RefEntsMultiIndices.hpp.

                                                               {
  return (static_cast<EntityHandle>(type) << MB_ID_WIDTH) |
         (~static_cast<EntityHandle>(MB_TYPE_MASK));
};

get_id_for_min_type() [1/2]

template<EntityType TYPE>

EntityHandle MoFEM::get_id_for_min_type

(

)

Definition at line 31 of file RefEntsMultiIndices.hpp.

                                                                     {
  return (static_cast<EntityHandle>(TYPE) << MB_ID_WIDTH);
};

get_id_for_min_type() [2/2]

EntityHandle MoFEM::get_id_for_min_type

(

const EntityType

type

)

Definition at line 40 of file RefEntsMultiIndices.hpp.

                                                               {
  return (static_cast<EntityHandle>(type) << MB_ID_WIDTH);
};

get_sub_iface_options_imp() [1/2]

template<class T >

static auto MoFEM::get_sub_iface_options_imp ( T *const  ptr, int    ) -> decltype(ptr->getSubInterfaceOptions())

static

Definition at line 151 of file Core.cpp.

                                               {
  return ptr->getSubInterfaceOptions();
};

get_sub_iface_options_imp() [2/2]

template<class T >

static auto MoFEM::get_sub_iface_options_imp ( T *const  ptr, long    ) -> MoFEMErrorCode

static

Definition at line 159 of file Core.cpp.

                                                                            {
  return 0;
};

get_tag_ptr()

void* MoFEM::get_tag_ptr	(	moab::Interface &	moab,
		Tag	th,
		EntityHandle	ent,
		int *	tag_size
	)

Get the tag ptr object.

Parameters

moab
th
ent
tag_size

Returns

void*

Definition at line 53 of file RefEntsMultiIndices.hpp.

                                        {
  void *ret_val;
  rval = moab.tag_get_by_ptr(th, &ent, 1, (const void **)&ret_val, tag_size);
  if (rval != MB_SUCCESS) {
    if (tag_size)
      *tag_size = 0;
    return NULL;
  } else {
    return ret_val;
  }
}

get_value()

template<class TYPE >

static MoFEMErrorCode MoFEM::get_value ( MatrixDouble &  pts_x, MatrixDouble &  pts_t, TYPE *  ctx  )

static

Definition at line 36 of file JacobiPolynomial.cpp.

                                           {
  MoFEMFunctionBeginHot;
  ctx->baseFunPtr->resize(pts_x.size2(), ctx->P + 1, false);
  ctx->baseDiffFunPtr->resize(pts_x.size2(), ctx->dIm * (ctx->P + 1), false);
  if (pts_x.size1() != pts_t.size1() || pts_x.size2() != pts_t.size2()) {
    SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
            "Inconsistent size of arguments");
  }
  double *l = NULL;
  double *diff_l = NULL;
  for (unsigned int gg = 0; gg < pts_x.size2(); gg++) {
    if (ctx->baseFunPtr)
      l = &((*ctx->baseFunPtr)(gg, 0));
    if (ctx->baseDiffFunPtr)
      diff_l = &((*ctx->baseDiffFunPtr)(gg, 0));
    ierr = (ctx->basePolynomialsType1)(ctx->P, ctx->aLpha, pts_x(0, gg),
                                       pts_t(0, gg), ctx->diffX, ctx->diffT, l,
                                       diff_l, ctx->dIm);
    CHKERRG(ierr);
  }
  MoFEMFunctionReturnHot(0);
}

getCommFromPetscObject()

MPI_Comm MoFEM::getCommFromPetscObject

(

PetscObject

obj

)

Get the Comm From Petsc Object object.

Parameters

obj

Returns

MPI_Comm

Definition at line 163 of file PetscSmartObj.hpp.

                                                        {
  MPI_Comm comm;
  CHK_THROW_MESSAGE(PetscObjectGetComm(obj, &comm),
                    "Failed to get comm from PETSc object");
  return comm;
};

getFTensor0FromVec()

template<int S = 1, class T , class A >

static auto MoFEM::getFTensor0FromVec ( ublas::vector< T, A > &  data )

static

Get tensor rank 0 (scalar) form data vector.

Example how to use it.

VectorDouble vec;
vec.resize(nb_gauss_pts,false);
vec.clear();
auto t0 = getFTensor0FromData(data);
for(int gg = 0;gg!=nb_gauss_pts;gg++) {
 
  ++t0;
}

Examples

ElasticityMixedFormulation.hpp, HookeElement.cpp, NavierStokesElement.cpp, PlasticOpsGeneric.hpp, PlasticOpsLargeStrains.hpp, PlasticOpsSmallStrains.hpp, PlasticThermalOps.hpp, PoissonOperators.hpp, Remodeling.cpp, UnsaturatedFlow.hpp, child_and_parent.cpp, hanging_node_approx.cpp, hcurl_check_approx_in_2d.cpp, higher_derivatives.cpp, mixed_poisson.cpp, poisson_2d_dis_galerkin.cpp, reaction_diffusion.cpp, scalar_check_approximation.cpp, and testing_jacobian_of_hook_scaled_with_density_element.cpp.

Definition at line 149 of file Templates.hpp.

                                                               {
  return GetFTensor0FromVecImpl<S, T, A>::get(data);
}

getFTensor1FromArray() [1/2]

template<int DIM, int S>

FTensor::Tensor1<FTensor::PackPtr<double *, S>, DIM> MoFEM::getFTensor1FromArray

(

VectorDouble &

data

)

Get FTensor1 from array.

Todo:

Generalise for diffrent arrays and data types

Template Parameters

DIM

Parameters

data

Returns

FTensor::Tensor1<FTensor::PackPtr<double *, DIM>, DIM>

Definition at line 823 of file Templates.hpp.

                                         {
  static_assert(DIM != DIM, "not implemented");
  return FTensor::Tensor1<FTensor::PackPtr<double *, S>, DIM>();
}

getFTensor1FromArray() [2/2]

template<>

FTensor::Tensor1< FTensor::PackPtr< double *, 3 >, 3 > MoFEM::getFTensor1FromArray

(

VectorDouble &

data

)

Definition at line 830 of file Templates.hpp.

                                         {
  return FTensor::Tensor1<FTensor::PackPtr<double *, 2>, 2>{&data[0], &data[1]};
}

getFTensor1FromArrayDiag() [1/2]

template<int DIM, int S>

FTensor::Tensor1<FTensor::PackPtr<double *, S>, DIM> MoFEM::getFTensor1FromArrayDiag	(	MatrixDouble &	data,
		const size_t	rr
	)

Get FTensor1 from array.

Todo:

Generalise for diffrent arrays and data types

Template Parameters

DIM

Parameters

data
rr

Returns

FTensor::Tensor1<FTensor::PackPtr<double *, DIM>, DIM>

Definition at line 874 of file Templates.hpp.

                                                              {
  static_assert(DIM != DIM, "not implemented");
  return FTensor::Tensor1<FTensor::PackPtr<double *, S>, DIM>();
}

getFTensor1FromArrayDiag() [2/2]

template<>

FTensor::Tensor1< FTensor::PackPtr< double *, 3 >, 3 > MoFEM::getFTensor1FromArrayDiag	(	MatrixDouble &	data,
		const size_t	rr
	)

Definition at line 881 of file Templates.hpp.

                                                              {
  return FTensor::Tensor1<FTensor::PackPtr<double *, 2>, 2>{&data(rr + 0, 0),
                                                            &data(rr + 1, 1)};
}

getFTensor1FromMat() [1/4]

template<int Tensor_Dim, int S = 1>

auto MoFEM::getFTensor1FromMat

(

MatrixDouble &

data

)

Get tensor rank 1 (vector) form data matrix (specialization)

Definition at line 213 of file Templates.hpp.

                                                   {
  return GetFTensor1FromMatImpl<Tensor_Dim, S, double, ublas::row_major,
                                DoubleAllocator>::get(data);
}

getFTensor1FromMat() [2/4]

template<int DIM, int S>

FTensor::Tensor1<FTensor::PackPtr<double *, S>, DIM> MoFEM::getFTensor1FromMat	(	MatrixDouble &	data,
		const size_t	rr
	)

Definition at line 843 of file Templates.hpp.

                                                        {
  static_assert(DIM != DIM, "not implemented");
  return FTensor::Tensor1<FTensor::PackPtr<double *, S>, DIM>();
}

getFTensor1FromMat() [3/4]

template<>

FTensor::Tensor1< FTensor::PackPtr< double *, 1 >, 3 > MoFEM::getFTensor1FromMat	(	MatrixDouble &	data,
		const size_t	rr
	)

Definition at line 850 of file Templates.hpp.

                                                        {
  return FTensor::Tensor1<FTensor::PackPtr<double *, 1>, 2>{&data(rr + 0, 0),
                                                            &data(rr + 1, 0)};
}

getFTensor1FromMat() [4/4]

template<int Tensor_Dim, int S = 1, class T , class L , class A >

FTensor::Tensor1<FTensor::PackPtr<T *, S>, Tensor_Dim> MoFEM::getFTensor1FromMat

(

ublas::matrix< T, L, A > &

data

)

Get tensor rank 1 (vector) form data matrix.

Definition at line 205 of file Templates.hpp.

                                               {
  static_assert(!std::is_same<T, T>::value, "not implemented");
}

getFTensor1FromPtr()

template<int DIM>

FTensor::Tensor1<FTensor::PackPtr<double *, DIM>, DIM> MoFEM::getFTensor1FromPtr

(

double *

ptr

)

Make Tensor1 from pointer.

Template Parameters

DIM

Parameters

ptr

Returns

FTensor::Tensor2<FTensor::PackPtr<double *, 3 * DIM>, 3, DIM>

Definition at line 718 of file Templates.hpp.

                                {
  static_assert(DIM != 3 && DIM != 2,
                "Such getFTensor1FromPtr specialization is not implemented");
};

getFTensor1FromPtr< 2 >()

template<>

FTensor::Tensor1<FTensor::PackPtr<double *, 2>, 2> MoFEM::getFTensor1FromPtr< 2 >

(

double *

ptr

)

Examples

PoissonDiscontinousGalerkin.hpp, and plate.cpp.

Definition at line 718 of file Templates.hpp.

                                   {
  return FTensor::Tensor1<FTensor::PackPtr<double *, 2>, 2>(&ptr[HVEC0],
                                                            &ptr[HVEC1]);
};

getFTensor1FromPtr< 3 >()

template<>

FTensor::Tensor1<FTensor::PackPtr<double *, 3>, 3> MoFEM::getFTensor1FromPtr< 3 >

(

double *

ptr

)

Definition at line 718 of file Templates.hpp.

                                   {
  return FTensor::Tensor1<FTensor::PackPtr<double *, 3>, 3>(
      &ptr[HVEC0], &ptr[HVEC1], &ptr[HVEC2]);
};

getFTensor2FromArray() [1/2]

template<int DIM1, int DIM2, int S>

auto MoFEM::getFTensor2FromArray	(	MatrixADouble &	data,
		const size_t	rr
	)

Definition at line 949 of file Templates.hpp.

                                                                       {
  return GetFTensor2FromArrayImpl<DIM1, DIM2, S, adouble, ublas::row_major,
                                  VecAllocator<adouble>>::get(data, rr);
}

getFTensor2FromArray() [2/2]

template<int DIM1, int DIM2, int S>

FTensor::Tensor2<FTensor::PackPtr<double *, S>, DIM1, DIM2> MoFEM::getFTensor2FromArray	(	MatrixDouble &	data,
		const size_t	rr
	)

Definition at line 927 of file Templates.hpp.

                                                          {
  return GetFTensor2FromArrayImpl<DIM1, DIM2, S, double, ublas::row_major,
                                  VecAllocator<double>>::get(data, rr);
}

getFTensor2FromArray2by2()

template<int S, typename T , typename L , typename A >

auto MoFEM::getFTensor2FromArray2by2	(	ublas::matrix< T, L, A > &	data,
		const FTensor::Number< S > &	,
		const size_t	rr
	)

Definition at line 933 of file Templates.hpp.

                                                      {
  return GetFTensor2FromArrayImpl<2, 2, S, T, L, A>::get(data, rr);
}

getFTensor2FromArray3by3()

template<int S, typename T , typename L , typename A >

auto MoFEM::getFTensor2FromArray3by3	(	ublas::matrix< T, L, A > &	data,
		const FTensor::Number< S > &	,
		const size_t	rr
	)

Definition at line 940 of file Templates.hpp.

                                                      {
  return GetFTensor2FromArrayImpl<3, 3, S, T, L, A>::get(data, rr);
}

getFTensor2FromMat() [1/2]

template<>

FTensor::Tensor2< FTensor::PackPtr< double *, 1 >, 2, 2 > MoFEM::getFTensor2FromMat

(

MatrixDouble &

data

)

Get tensor rank 2 (matrix) form data matrix (specialization)

Template specialization for getFTensor2FromMat

Definition at line 234 of file Templates.hpp.

                                       {
#ifndef NDEBUG
  if (data.size1() != 9)
    THROW_MESSAGE("getFTensor2FromMat<3,3>: wrong size of data matrix; numer "
                  "of rows should be 9 but is " +
                  boost::lexical_cast<std::string>(data.size1()));
#endif
  return FTensor::Tensor2<FTensor::PackPtr<double *, 1>, 3, 3>(
      &data(0, 0), &data(1, 0), &data(2, 0), &data(3, 0), &data(4, 0),
      &data(5, 0), &data(6, 0), &data(7, 0), &data(8, 0));
}

getFTensor2FromMat() [2/2]

template<int Tensor_Dim0, int Tensor_Dim1, class T , class L , class A >

FTensor::Tensor2<FTensor::PackPtr<T *, 1>, Tensor_Dim0, Tensor_Dim1> MoFEM::getFTensor2FromMat

(

ublas::matrix< T, L, A > &

data

)

Get tensor rank 2 (matrix) form data matrix.

Definition at line 223 of file Templates.hpp.

                                               {
  static_assert(!std::is_same<T, T>::value,
                "Such getFTensor2FromMat specialisation is not implemented");
}

getFTensor2FromPtr()

template<int DIM1, int DIM2>

FTensor::Tensor2<FTensor::PackPtr<double *, DIM1 * DIM2>, DIM1, DIM2> MoFEM::getFTensor2FromPtr

(

double *

ptr

)

Make Tensor2 from pointer.

Template Parameters

DIM

Parameters

ptr

Returns

FTensor::Tensor2<FTensor::PackPtr<double *, DIM1 * DIM2>, DIM1, DIM2>

Definition at line 746 of file Templates.hpp.

                                {
  static_assert(DIM1 == DIM1 || DIM2 != DIM2,
                "Such getFTensor2FromPtr is not implemented");
};

getFTensor2FromPtr< 2, 2 >()

template<>

FTensor::Tensor2<FTensor::PackPtr<double *, 4>, 2, 2> MoFEM::getFTensor2FromPtr< 2, 2 >

(

double *

ptr

)

Definition at line 746 of file Templates.hpp.

                                                                 {
  return FTensor::Tensor2<FTensor::PackPtr<double *, 4>, 2, 2>(
      &ptr[0], &ptr[1], &ptr[2], &ptr[3]);
};

getFTensor2FromPtr< 3, 2 >()

template<>

FTensor::Tensor2<FTensor::PackPtr<double *, 6>, 3, 2> MoFEM::getFTensor2FromPtr< 3, 2 >

(

double *

ptr

)

Definition at line 746 of file Templates.hpp.

                                                                 {
  return FTensor::Tensor2<FTensor::PackPtr<double *, 6>, 3, 2>(
      &ptr[HVEC0_0], &ptr[HVEC0_1],
 
      &ptr[HVEC1_0], &ptr[HVEC1_1],
 
      &ptr[HVEC2_0], &ptr[HVEC2_1]);
};

getFTensor2FromPtr< 3, 3 >()

template<>

FTensor::Tensor2<FTensor::PackPtr<double *, 9>, 3, 3> MoFEM::getFTensor2FromPtr< 3, 3 >

(

double *

ptr

)

Definition at line 746 of file Templates.hpp.

                                                                 {
  return FTensor::Tensor2<FTensor::PackPtr<double *, 9>, 3, 3>(
      &ptr[HVEC0_0], &ptr[HVEC0_1], &ptr[HVEC0_2],
 
      &ptr[HVEC1_0], &ptr[HVEC1_1], &ptr[HVEC1_2],
 
      &ptr[HVEC2_0], &ptr[HVEC2_1], &ptr[HVEC2_2]);
};

getFTensor2SymmetricFromMat() [1/2]

template<int Tensor_Dim, int S = 1>

static auto MoFEM::getFTensor2SymmetricFromMat ( MatrixDouble &  data )

static

Definition at line 333 of file Templates.hpp.

                                                                   {
  return getFTensor2SymmetricFromMat<Tensor_Dim, S, double, ublas::row_major,
                                     DoubleAllocator>(data);
}

getFTensor2SymmetricFromMat() [2/2]

template<int Tensor_Dim, int S, class T , class L , class A >

static auto MoFEM::getFTensor2SymmetricFromMat ( ublas::matrix< T, L, A > &  data )

static

Get symmetric tensor rank 2 (matrix) form data matrix.

Definition at line 328 of file Templates.hpp.

                                                                           {
  return GetFTensor2SymmetricFromMatImpl<Tensor_Dim, S, T, L, A>::get(data);
}

getFTensor2SymmetricLowerFromPtr()

template<int DIM>

FTensor::Tensor2_symmetric<FTensor::PackPtr<double *, DIM * DIM>, DIM> MoFEM::getFTensor2SymmetricLowerFromPtr

(

double *

ptr

)

Make summetric Tensor2 from pointer, taking lower triangle of matrix.

Template Parameters

DIM

Parameters

ptr

Returns

FTensor::Tensor2<FTensor::PackPtr<double *, DIM1 * DIM2>, DIM1, DIM2>

Definition at line 789 of file Templates.hpp.

                                              {
  static_assert(DIM,
                "Such getFTensor2SymmetricUpperFromPtr is not implemented");
}

getFTensor2SymmetricLowerFromPtr< 2 >()

template<>

FTensor::Tensor2_symmetric<FTensor::PackPtr<double *, 4>, 2> MoFEM::getFTensor2SymmetricLowerFromPtr< 2 >

(

double *

ptr

)

Examples

plate.cpp.

Definition at line 789 of file Templates.hpp.

                                                 {
  return FTensor::Tensor2_symmetric<FTensor::PackPtr<double *, 4>, 2>(
      &ptr[0], &ptr[1], &ptr[3]);
};

getFTensor2SymmetricLowerFromPtr< 3 >()

template<>

FTensor::Tensor2_symmetric<FTensor::PackPtr<double *, 9>, 3> MoFEM::getFTensor2SymmetricLowerFromPtr< 3 >

(

double *

ptr

)

Definition at line 789 of file Templates.hpp.

                                                 {
  return FTensor::Tensor2_symmetric<FTensor::PackPtr<double *, 9>, 3>(
      &ptr[HVEC0_0], &ptr[HVEC0_1], &ptr[HVEC0_2],
 
      &ptr[HVEC1_0], &ptr[HVEC1_1],
 
      &ptr[HVEC2_2]);
};

getFTensor3DgFromMat() [1/2]

template<int Tensor_Dim01, int Tensor_Dim2, int S = 1>

static auto MoFEM::getFTensor3DgFromMat ( MatrixDouble &  data )

static

Definition at line 498 of file Templates.hpp.

                                                            {
  return GetFTensor3DgFromMatImpl<Tensor_Dim01, Tensor_Dim2, S, double,
                                  ublas::row_major, DoubleAllocator>::get(data);
}

getFTensor3DgFromMat() [2/2]

template<int Tensor_Dim01, int Tensor_Dim2, int S = 1, class T , class L , class A >

static FTensor::Dg<FTensor::PackPtr<T *, 1>, Tensor_Dim01, Tensor_Dim2> MoFEM::getFTensor3DgFromMat ( ublas::matrix< T, L, A > &  data )

static

Get symmetric tensor rank 3 on the first two indices from form data matrix.

Template Parameters

Tensor_Dim01	dimension of first two indicies
Tensor_Dim2	dimension of last index
T	the type of object stored
L	the storage organization
A	the type of Storage array

Parameters

data	data container

Returns

FTensor::Dg<FTensor::PackPtr<T *, 1>, Tensor_Dim01, TensorDim23>

Definition at line 492 of file Templates.hpp.

                                                 {
  static_assert(!std::is_same<T, T>::value,
                "Such getFTensor3DgFromMat specialisation is not implemented");
}

getFTensor3FromMat() [1/2]

template<int Tensor_Dim0, int Tensor_Dim1, int Tensor_Dim2, int S = 1>

static auto MoFEM::getFTensor3FromMat ( MatrixDouble &  data )

static

Definition at line 703 of file Templates.hpp.

                                                          {
  return GetFTensor3FromMatImpl<Tensor_Dim0, Tensor_Dim1, Tensor_Dim2, S,
                                double, ublas::row_major,
                                DoubleAllocator>::get(data);
}

getFTensor3FromMat() [2/2]

template<int Tensor_Dim0, int Tensor_Dim1, int Tensor_Dim2, int S = 1, class T , class L , class A >

static FTensor::Tensor3<FTensor::PackPtr<T *, 1>, Tensor_Dim0, Tensor_Dim1, Tensor_Dim2> MoFEM::getFTensor3FromMat ( ublas::matrix< T, L, A > &  data )

static

Get tensor rank 3 (non symmetries) form data matrix.

Template Parameters

Tensor_Dim0	dimension of frirst index
Tensor_Dim1	dimension of second index
Tensor_Dim2	dimension of third index
S	shift size
T	the type of object stored
L	the storage organization
A	the type of Storage array

Parameters

data	data container

Returns

FTensor::Tensor3<FTensor::PackPtr<T *, 1>, Tensor_Dim0, Tensor_Dim1, Tensor_Dim2>

Examples

EshelbianOperators.cpp.

Definition at line 697 of file Templates.hpp.

                                               {
  static_assert(!std::is_same<T, T>::value,
                "Such getFTensor3FromMat specialisation is not implemented");
}

getFTensor4DdgFromMat() [1/2]

template<int Tensor_Dim01, int Tensor_Dim23, int S = 1>

static auto MoFEM::getFTensor4DdgFromMat ( MatrixDouble &  data )

static

Definition at line 417 of file Templates.hpp.

                                                             {
  return GetFTensor4DdgFromMatImpl<Tensor_Dim01, Tensor_Dim23, S, double,
                                   ublas::row_major,
                                   DoubleAllocator>::get(data);
}

getFTensor4DdgFromMat() [2/2]

template<int Tensor_Dim01, int Tensor_Dim23, int S = 1, class T , class L , class A >

static FTensor::Ddg<FTensor::PackPtr<T *, 1>, Tensor_Dim01, Tensor_Dim23> MoFEM::getFTensor4DdgFromMat ( ublas::matrix< T, L, A > &  data )

static

Get symmetric tensor rank 4 on first two and last indices from form data matrix.

Template Parameters

Tensor_Dim01	dimension of first two indicies
Tensor_Dim23	dimension of second two indicies
T	the type of object stored
L	the storage organization
A	the type of Storage array

Parameters

data	data container

Returns

FTensor::Ddg<FTensor::PackPtr<T *, 1>, Tensor_Dim01, TensorDim23>

Definition at line 411 of file Templates.hpp.

                                                  {
  static_assert(!std::is_same<T, T>::value,
                "Such getFTensor4DdgFromMat specialisation is not implemented");
}

getFTensor4FromMat() [1/2]

template<int Tensor_Dim0, int Tensor_Dim1, int Tensor_Dim2, int Tensor_Dim3, int S = 1>

static auto MoFEM::getFTensor4FromMat ( MatrixDouble &  data )

static

Definition at line 599 of file Templates.hpp.

                                                          {
  return GetFTensor4FromMatImpl<Tensor_Dim0, Tensor_Dim1, Tensor_Dim2,
                                Tensor_Dim3, S, double, ublas::row_major,
                                DoubleAllocator>::get(data);
}

getFTensor4FromMat() [2/2]

template<int Tensor_Dim0, int Tensor_Dim1, int Tensor_Dim2, int Tensor_Dim3, int S = 1, class T , class L , class A >

static FTensor::Tensor4<FTensor::PackPtr<T *, 1>, Tensor_Dim0, Tensor_Dim1, Tensor_Dim2, Tensor_Dim3> MoFEM::getFTensor4FromMat ( ublas::matrix< T, L, A > &  data )

static

Get tensor rank 4 (non symmetric) form data matrix.

Template Parameters

Tensor_Dim0	dimension of frirst index
Tensor_Dim1	dimension of second index
Tensor_Dim2	dimension of third index
Tensor_Dim3	dimension of fourth index
T	the type of object stored
L	the storage organization
A	the type of Storage array

Parameters

data	data container

Returns

FTensor::Tensor4<FTensor::PackPtr<T *, 1>, Tensor_Dim0, Tensor_Dim1, Tensor_Dim2, Tensor_Dim3>

Definition at line 592 of file Templates.hpp.

                                               {
  static_assert(!std::is_same<T, T>::value,
                "Such getFTensor4FromMat specialisation is not implemented");
}

getMatrixAdaptor()

template<typename T1 >

auto MoFEM::getMatrixAdaptor	(	T1	ptr,
		const size_t	n,
		const size_t	m
	)

Get Matrix adaptor.

double *a;
CHKERR VecGetArray(v,&a);
 
for(int n = 0; n != nodes; ++n) {
 
  auto F = getMatrixAdaptor(&a[3*3*n], 3, 3);
  MatrixDouble C = prod(F, trans(F));
 
}
 
CHKERR VecRetsoreArray(v,&a);

Examples

field_evaluator.cpp.

Definition at line 71 of file Templates.hpp.

                                                                     {
  typedef typename std::remove_pointer<T1>::type T;
  return MatrixShallowArrayAdaptor<T>(
      n, m, ublas::shallow_array_adaptor<T>(n * m, ptr));
};

getMaxOrder()

template<typename ENTMULTIINDEX >

static int MoFEM::getMaxOrder ( const ENTMULTIINDEX &  multi_index )

static

Definition at line 125 of file ForcesAndSourcesCore.cpp.

                                                                {
  int max_order = 0;
  for (auto ent_field_weak_ptr : multi_index)
    if (auto e = ent_field_weak_ptr.lock()) {
      const int order = e->getMaxOrder();
      max_order = (max_order < order) ? order : max_order;
    }
  return max_order;
}

getPetscObject()

template<typename T >

PetscObject MoFEM::getPetscObject

(

T

obj

)

Definition at line 22 of file PetscSmartObj.hpp.

                                                               {
  return reinterpret_cast<PetscObject>(obj);
}

getVectorAdaptor()

template<typename T1 >

auto MoFEM::getVectorAdaptor	(	T1	ptr,
		const size_t	n
	)

Get Vector adaptor.

double *a;
CHKERR VecGetArray(v,&a);
 
for(int n = 0; n != nodes; ++n) {
 
  auto a = getVectorAdaptor(&a[3*n], 3);
  double dot = inner_prod(a, a);
 
}
 
CHKERR VecRetsoreArray(v,&a);

Examples

EshelbianPlasticity.cpp, and bernstein_bezier_generate_base.cpp.

Definition at line 45 of file Templates.hpp.

                                                                            {
  typedef typename std::remove_pointer<T1>::type T;
  return VectorShallowArrayAdaptor<T>(n,
                                      ublas::shallow_array_adaptor<T>(n, ptr));
};

Hcurl_Ainsworth_BubbleFaceFunctions_MBTET()

MoFEMErrorCode MoFEM::Hcurl_Ainsworth_BubbleFaceFunctions_MBTET	(	int *	faces_nodes,
		int *	p,
		double *	N,
		double *	diffN,
		double *	phi_f[4],
		double *	diff_phi_f[4],
		int	nb_integration_pts,
		PetscErrorCode(*)(int p, double s, double *diff_s, double *L, double *diffL, const int dim)	base_polynomials
	)

Face edge base functions of Hcurl space on face on tetrahedral.

On each face we have P*(P-1) base functions and are 4 faces.

See NBFACETRI_AINSWORTH_EDGE_HCURL

Parameters

face_nodes	array [4*3] of local indices of face nodes
p	approximation order
N	array shape functions evaluated at each integration point
diffN	derivatives of nodal shape functions
phi_f[4]	calculated shape functions for each face
diff_phi_v[4]	derivatives of shape functions for each face
nb_integration_pts	number of shape functions
base_polynomials	polynomial base function (f.e. Legendre of Lobatto)

Returns

error code

Definition at line 545 of file Hcurl.cpp.

                                                       {
 
  MoFEMFunctionBeginHot;
 
  FTensor::Index<'i', 3> i;
  FTensor::Index<'j', 3> j;
 
  // double coords[] = { 0,0,0, 1,0,0, 0,1,0, 0,0,1 };
  // FTensor::Tensor1<double*,3> t_coords[4] = {
  //   FTensor::Tensor1<double*,3>(&coords[0],&coords[ 1],&coords[ 2]),
  //   FTensor::Tensor1<double*,3>(&coords[3],&coords[ 4],&coords[ 5]),
  //   FTensor::Tensor1<double*,3>(&coords[6],&coords[ 7],&coords[ 8]),
  //   FTensor::Tensor1<double*,3>(&coords[9],&coords[10],&coords[11])
  // };
  FTensor::Tensor1<double *, 3> t_node_diff_ksi[4] = {
      FTensor::Tensor1<double *, 3>(&diffN[0], &diffN[1], &diffN[2]),
      FTensor::Tensor1<double *, 3>(&diffN[3], &diffN[4], &diffN[5]),
      FTensor::Tensor1<double *, 3>(&diffN[6], &diffN[7], &diffN[8]),
      FTensor::Tensor1<double *, 3>(&diffN[9], &diffN[10], &diffN[11])};
  FTensor::Tensor1<double, 3> t_diff_ksi0i, t_diff_ksi0j;
  FTensor::Tensor1<double, 3> diff_beta_0ij;
 
  FTensor::Tensor1<double, 3> tou_0i;
  FTensor::Tensor1<double, 3> tou_0j;
 
  for (int ff = 0; ff != 4; ff++) {
 
    if (NBFACETRI_AINSWORTH_FACE_HCURL(p[ff]) == 0)
      continue;
 
    int n0 = faces_nodes[3 * ff + 0];
    int n1 = faces_nodes[3 * ff + 1];
    int n2 = faces_nodes[3 * ff + 2];
 
    // tou_0i(i) = t_coords[n1](i)-t_coords[n0](i);
    // tou_0j(i) = t_coords[n2](i)-t_coords[n0](i);
    tou_0i(i) = t_node_diff_ksi[n1](i) - t_node_diff_ksi[n0](i);
    tou_0j(i) = t_node_diff_ksi[n2](i) - t_node_diff_ksi[n0](i);
 
    t_diff_ksi0i(i) = t_node_diff_ksi[n1](i) - t_node_diff_ksi[n0](i);
    t_diff_ksi0j(i) = t_node_diff_ksi[n2](i) - t_node_diff_ksi[n0](i);
 
    double psi_l_0i[p[ff] + 1], diff_psi_l_0i[3 * p[ff] + 3];
    double psi_l_0j[p[ff] + 1], diff_psi_l_0j[3 * p[ff] + 3];
 
    FTensor::Tensor1<double *, 3> t_phi_f(&phi_f[ff][0], &phi_f[ff][1],
                                          &phi_f[ff][2], 3);
    FTensor::Tensor2<double *, 3, 3> t_diff_phi_f(
        &diff_phi_f[ff][0], &diff_phi_f[ff][3], &diff_phi_f[ff][6],
        &diff_phi_f[ff][1], &diff_phi_f[ff][4], &diff_phi_f[ff][7],
        &diff_phi_f[ff][2], &diff_phi_f[ff][5], &diff_phi_f[ff][8], 9);
    FTensor::Tensor1<double, 3> t_b;
 
    for (int ii = 0; ii != nb_integration_pts; ii++) {
 
      const int node_shift = ii * 4;
      const double beta_0ij =
          N[node_shift + n0] * N[node_shift + n1] * N[node_shift + n2];
      diff_beta_0ij(i) =
          t_node_diff_ksi[n0](i) * N[node_shift + n1] * N[node_shift + n2] +
          N[node_shift + n0] * t_node_diff_ksi[n1](i) * N[node_shift + n2] +
          N[node_shift + n0] * N[node_shift + n1] * t_node_diff_ksi[n2](i);
 
      const double ksi_0i = N[node_shift + n1] - N[node_shift + n0];
      CHKERR base_polynomials(p[ff], ksi_0i, &t_diff_ksi0i(0), psi_l_0i,
                              diff_psi_l_0i, 3);
 
      const double ksi_0j = N[node_shift + n2] - N[node_shift + n0];
      CHKERR base_polynomials(p[ff], ksi_0j, &t_diff_ksi0j(0), psi_l_0j,
                              diff_psi_l_0j, 3);
 
      int cc = 0;
      for (int oo = 0; oo <= (p[ff] - 3); oo++) {
        FTensor::Tensor1<double *, 3> t_diff_psi_l_0i(
            &diff_psi_l_0i[0], &diff_psi_l_0i[p[ff] + 1],
            &diff_psi_l_0i[2 * p[ff] + 2], 1);
        for (int pp0 = 0; pp0 <= oo; pp0++) {
          const int pp1 = oo - pp0;
          if (pp1 >= 0) {
            FTensor::Tensor1<double *, 3> t_diff_psi_l_0j(
                &diff_psi_l_0j[pp1], &diff_psi_l_0j[p[ff] + 1 + pp1],
                &diff_psi_l_0j[2 * p[ff] + 2 + pp1], 1);
            // base functions
            const double a = beta_0ij * psi_l_0i[pp0] * psi_l_0j[pp1];
            t_phi_f(i) = a * tou_0i(i);
            ++t_phi_f;
            ++cc;
            t_phi_f(i) = a * tou_0j(i);
            ++t_phi_f;
            ++cc;
            // diff base functions
            t_b(j) = diff_beta_0ij(j) * psi_l_0i[pp0] * psi_l_0j[pp1] +
                     beta_0ij * t_diff_psi_l_0i(j) * psi_l_0j[pp1] +
                     beta_0ij * psi_l_0i[pp0] * t_diff_psi_l_0j(j);
            t_diff_phi_f(i, j) = t_b(j) * tou_0i(i);
            ++t_diff_phi_f;
            t_diff_phi_f(i, j) = t_b(j) * tou_0j(i);
            ++t_diff_phi_f;
            ++t_diff_psi_l_0i;
          }
        }
      }
      const int nb_base_fun_on_face = NBFACETRI_AINSWORTH_FACE_HCURL(p[ff]);
      if (cc != nb_base_fun_on_face) {
        SETERRQ2(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
                 "Wrong number of base functions %d != %d", cc,
                 nb_base_fun_on_face);
      }
    }
  }
  MoFEMFunctionReturnHot(0);
}

Hcurl_Ainsworth_BubbleFaceFunctions_MBTET_ON_FACE()

MoFEMErrorCode MoFEM::Hcurl_Ainsworth_BubbleFaceFunctions_MBTET_ON_FACE	(	int *	faces_nodes,
		int	p,
		double *	N,
		double *	diffN,
		double *	phi_f,
		double *	diff_phi_f,
		int	nb_integration_pts,
		PetscErrorCode(*)(int p, double s, double *diff_s, double *L, double *diffL, const int dim)	base_polynomials
	)

Face edge base functions of Hcurl space on face.

On each face we have P*(P-1) base functions and are 4 faces.

See NBFACETRI_AINSWORTH_EDGE_HCURL

Parameters

face_nodes	array [4*3] of local indices of face nodes
p	approximation order
N	array shape functions evaluated at each integration point
diffN	derivatives of nodal shape functions
phi_f[4]	calculated shape functions for each face
diff_phi_v[4]	derivatives of shape functions for each face
nb_integration_pts	number of shape functions
base_polynomials	polynomial base function (f.e. Legendre of Lobatto)

Returns

error code

Definition at line 663 of file Hcurl.cpp