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Public Member Functions | Public Attributes | List of all members
ConvectiveMassElement::OpMassJacobian Struct Reference

#include <users_modules/basic_finite_elements/src/ConvectiveMassElement.hpp>

Inheritance diagram for ConvectiveMassElement::OpMassJacobian:
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Collaboration diagram for ConvectiveMassElement::OpMassJacobian:
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Public Member Functions

 OpMassJacobian (const std::string field_name, BlockData &data, CommonData &common_data, boost::ptr_vector< MethodForForceScaling > &methods_op, int tag, bool linear=false)
 
MoFEMErrorCode doWork (int row_side, EntityType row_type, EntitiesFieldData::EntData &row_data)
 

Public Attributes

BlockDatadAta
 
CommonDatacommonData
 
int tAg
 
bool jAcobian
 
boollInear
 
bool fieldDisp
 
boost::ptr_vector< MethodForForceScaling > & methodsOp
 
FTensor::Index< 'i', 3 > i
 
FTensor::Index< 'j', 3 > j
 
FTensor::Index< 'k', 3 > k
 
VectorBoundedArray< adouble, 3 > a
 
VectorBoundedArray< adouble, 3 > dot_W
 
VectorBoundedArray< adouble, 3 > dp_dt
 
VectorBoundedArray< adouble, 3 > a_res
 
MatrixBoundedArray< adouble, 9 > h
 
MatrixBoundedArray< adouble, 9 > H
 
MatrixBoundedArray< adouble, 9 > invH
 
MatrixBoundedArray< adouble, 9 > F
 
MatrixBoundedArray< adouble, 9 > g
 
MatrixBoundedArray< adouble, 9 > G
 
std::vector< doubleactive
 

Detailed Description

Definition at line 177 of file ConvectiveMassElement.hpp.

Constructor & Destructor Documentation

◆ OpMassJacobian()

ConvectiveMassElement::OpMassJacobian::OpMassJacobian ( const std::string  field_name,
BlockData data,
CommonData common_data,
boost::ptr_vector< MethodForForceScaling > &  methods_op,
int  tag,
bool  linear = false 
)

Definition at line 154 of file ConvectiveMassElement.cpp.

158 : VolumeElementForcesAndSourcesCore::UserDataOperator(
159 field_name, ForcesAndSourcesCore::UserDataOperator::OPROW),
160 dAta(data), commonData(common_data), tAg(tag), jAcobian(jacobian),
161 lInear(commonData.lInear), fieldDisp(false), methodsOp(methods_op) {}
constexpr auto field_name
boost::ptr_vector< MethodForForceScaling > & methodsOp

Member Function Documentation

◆ doWork()

MoFEMErrorCode ConvectiveMassElement::OpMassJacobian::doWork ( int  row_side,
EntityType  row_type,
EntitiesFieldData::EntData row_data 
)

Definition at line 163 of file ConvectiveMassElement.cpp.

164 {
166
167 if (dAta.tEts.find(getNumeredEntFiniteElementPtr()->getEnt()) ==
168 dAta.tEts.end()) {
170 }
171
172 // do it only once, no need to repeat this for edges,faces or tets
173 if (row_type != MBVERTEX)
175
176 int nb_dofs = row_data.getIndices().size();
177 if (nb_dofs == 0)
179
180 {
181
182 if (a.size() != 3) {
183 a.resize(3, false);
184 dot_W.resize(3, false);
185 a_res.resize(3, false);
186 g.resize(3, 3, false);
187 G.resize(3, 3, false);
188 h.resize(3, 3, false);
189 H.resize(3, 3, false);
190 invH.resize(3, 3, false);
191 F.resize(3, 3, false);
192 }
193
194 std::fill(dot_W.begin(), dot_W.end(), 0);
195 std::fill(H.data().begin(), H.data().end(), 0);
196 std::fill(invH.data().begin(), invH.data().end(), 0);
197 for (int ii = 0; ii != 3; ii++) {
198 H(ii, ii) = 1;
199 invH(ii, ii) = 1;
200 }
201
202 int nb_gauss_pts = row_data.getN().size1();
203 commonData.valMass.resize(nb_gauss_pts);
204 commonData.jacMassRowPtr.resize(nb_gauss_pts);
205 commonData.jacMass.resize(nb_gauss_pts);
206
207 const std::vector<VectorDouble> &dot_spacial_vel =
209
210 const std::vector<MatrixDouble> &spatial_positions_grad =
212
213 const std::vector<MatrixDouble> &spatial_velocities_grad =
215
216 const std::vector<VectorDouble> &meshpos_vel =
218
219 const std::vector<MatrixDouble> &mesh_positions_gradient =
221
222 int nb_active_vars = 0;
223 for (int gg = 0; gg < nb_gauss_pts; gg++) {
224
225 if (gg == 0) {
226
227 trace_on(tAg);
228
229 for (int nn1 = 0; nn1 < 3; nn1++) { // 0
230 // commonData.dataAtGaussPts["DOT_"+commonData.spatialVelocities]
231 a[nn1] <<= dot_spacial_vel[gg][nn1];
232 nb_active_vars++;
233 }
234 for (int nn1 = 0; nn1 < 3; nn1++) { // 3
235 for (int nn2 = 0; nn2 < 3; nn2++) {
236 // commonData.gradAtGaussPts[commonData.spatialPositions][gg]
237 h(nn1, nn2) <<= spatial_positions_grad[gg](nn1, nn2);
238 if (fieldDisp) {
239 if (nn1 == nn2) {
240 h(nn1, nn2) += 1;
241 }
242 }
243 nb_active_vars++;
244 }
245 }
247 .size() > 0) {
248 for (int nn1 = 0; nn1 < 3; nn1++) { // 3+9=12
249 for (int nn2 = 0; nn2 < 3; nn2++) {
250 // commonData.gradAtGaussPts[commonData.spatialVelocities]
251 g(nn1, nn2) <<= spatial_velocities_grad[gg](nn1, nn2);
252 nb_active_vars++;
253 }
254 }
255 for (int nn1 = 0; nn1 < 3; nn1++) { // 3+9+9=21
256 // commonData.dataAtGaussPts["DOT_"+commonData.meshPositions]
257 dot_W(nn1) <<= meshpos_vel[gg][nn1];
258 nb_active_vars++;
259 }
260 for (int nn1 = 0; nn1 < 3; nn1++) { // 3+9+9+3=24
261 for (int nn2 = 0; nn2 < 3; nn2++) {
262 // commonData.gradAtGaussPts[commonData.meshPositions][gg]
263 H(nn1, nn2) <<= mesh_positions_gradient[gg](nn1, nn2);
264 nb_active_vars++;
265 }
266 }
267 }
268
269 auto a0 = dAta.a0;
271
272 auto t_a_res =
274 auto t_a = FTensor::Tensor1<adouble *, 3>{&a[0], &a[1], &a[2]};
275 auto t_a0 = FTensor::Tensor1<double *, 3>{&a0[0], &a0[1], &a0[2]};
276 auto t_dotW =
283
284 const double rho0 = dAta.rho0;
285
288
289 t_G(i, j) = t_g(i, k) * t_invH(k, j);
290 t_a_res(i) = t_a(i) - t_a0(i) + t_G(i, j) * t_dotW(j);
291
292 // FIXME: there is error somewhere for nonlinear case
293 // test dam example with -is_linear 0
294 if (!lInear) {
295
296 t_F(i, j) = t_h(i, k) * t_invH(k, j);
297 t_a_res(i) *= rho0 * detH;
298 t_a_res(i) *= determinantTensor3by3(t_F);
299
300 } else {
301
302 t_a_res(i) *= rho0 * detH;
303 }
304
305 // dependant
307 res.resize(3);
308 for (int rr = 0; rr < 3; rr++) {
309 a_res[rr] >>= res[rr];
310 }
311
312 trace_off();
313 }
314
315 active.resize(nb_active_vars);
316 int aa = 0;
317 for (int nn1 = 0; nn1 < 3; nn1++) { // 0
318 active[aa++] = dot_spacial_vel[gg][nn1];
319 }
320 for (int nn1 = 0; nn1 < 3; nn1++) { // 3
321 for (int nn2 = 0; nn2 < 3; nn2++) {
322 if (fieldDisp && nn1 == nn2) {
323 active[aa++] = spatial_positions_grad[gg](nn1, nn2) + 1;
324 } else {
325 active[aa++] = spatial_positions_grad[gg](nn1, nn2);
326 }
327 }
328 }
330 0) {
331 for (int nn1 = 0; nn1 < 3; nn1++) { // 3+9=12
332 for (int nn2 = 0; nn2 < 3; nn2++) {
333 active[aa++] = spatial_velocities_grad[gg](nn1, nn2);
334 }
335 }
336 for (int nn1 = 0; nn1 < 3; nn1++) { // 3+9+9=21
337 active[aa++] = meshpos_vel[gg][nn1];
338 }
339 for (int nn1 = 0; nn1 < 3; nn1++) { // 3+9+9+3=24
340 for (int nn2 = 0; nn2 < 3; nn2++) {
341 active[aa++] = mesh_positions_gradient[gg](nn1, nn2);
342 }
343 }
344 }
345
346 if (!jAcobian) {
348 if (gg > 0) {
349 res.resize(3);
350 int r;
351 r = ::function(tAg, 3, nb_active_vars, &active[0], &res[0]);
352 if (r != 3) { // function is locally analytic
353 SETERRQ1(PETSC_COMM_SELF, MOFEM_OPERATION_UNSUCCESSFUL,
354 "ADOL-C function evaluation with error r = %d", r);
355 }
356 }
357 double val = getVolume() * getGaussPts()(3, gg);
358 res *= val;
359 // cout << "my res " << res << endl;
360 } else {
361 commonData.jacMassRowPtr[gg].resize(3);
362 commonData.jacMass[gg].resize(3, nb_active_vars);
363 for (int nn1 = 0; nn1 < 3; nn1++) {
364 (commonData.jacMassRowPtr[gg])[nn1] =
365 &(commonData.jacMass[gg](nn1, 0));
366 }
367 int r;
368 r = jacobian(tAg, 3, nb_active_vars, &active[0],
369 &(commonData.jacMassRowPtr[gg])[0]);
370 if (r != 3) {
371 SETERRQ(PETSC_COMM_SELF, MOFEM_OPERATION_UNSUCCESSFUL,
372 "ADOL-C function evaluation with error");
373 }
374 double val = getVolume() * getGaussPts()(3, gg);
375 commonData.jacMass[gg] *= val;
376 }
377 }
378 }
379
381}
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:447
@ MOFEM_OPERATION_UNSUCCESSFUL
Definition: definitions.h:34
#define CHKERR
Inline error check.
Definition: definitions.h:535
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:440
constexpr double a0
MoFEMErrorCode invertTensor3by3(ublas::matrix< T, L, A > &jac_data, ublas::vector< T, A > &det_data, ublas::matrix< T, L, A > &inv_jac_data)
Calculate inverse of tensor rank 2 at integration points.
Definition: Templates.hpp:1559
auto getFTensor2FromArray3by3(ublas::matrix< T, L, A > &data, const FTensor::Number< S > &, const size_t rr, const size_t cc=0)
Definition: Templates.hpp:1313
static auto determinantTensor3by3(T &t)
Calculate the determinant of a 3x3 matrix or a tensor of rank 2.
Definition: Templates.hpp:1511
int r
Definition: sdf.py:8
VectorDouble a0
constant acceleration
std::map< std::string, std::vector< VectorDouble > > dataAtGaussPts
std::map< std::string, std::vector< MatrixDouble > > gradAtGaussPts
std::vector< std::vector< double * > > jacMassRowPtr
MatrixBoundedArray< adouble, 9 > invH
MatrixBoundedArray< adouble, 9 > G
MatrixBoundedArray< adouble, 9 > H
MatrixBoundedArray< adouble, 9 > g
MatrixBoundedArray< adouble, 9 > h
VectorBoundedArray< adouble, 3 > a_res
MatrixBoundedArray< adouble, 9 > F
VectorBoundedArray< adouble, 3 > dot_W
VectorBoundedArray< adouble, 3 > a
static MoFEMErrorCode applyScale(const FEMethod *fe, boost::ptr_vector< MethodForForceScaling > &methods_op, VectorDouble &nf)
MatrixDouble & getN(const FieldApproximationBase base)
get base functions this return matrix (nb. of rows is equal to nb. of Gauss pts, nb....
const VectorInt & getIndices() const
Get global indices of dofs on entity.

Member Data Documentation

◆ a

VectorBoundedArray<adouble, 3> ConvectiveMassElement::OpMassJacobian::a

Definition at line 199 of file ConvectiveMassElement.hpp.

◆ a_res

VectorBoundedArray<adouble, 3> ConvectiveMassElement::OpMassJacobian::a_res

Definition at line 199 of file ConvectiveMassElement.hpp.

◆ active

std::vector<double> ConvectiveMassElement::OpMassJacobian::active

Definition at line 201 of file ConvectiveMassElement.hpp.

◆ commonData

CommonData& ConvectiveMassElement::OpMassJacobian::commonData

Definition at line 182 of file ConvectiveMassElement.hpp.

◆ dAta

BlockData& ConvectiveMassElement::OpMassJacobian::dAta

Definition at line 181 of file ConvectiveMassElement.hpp.

◆ dot_W

VectorBoundedArray<adouble, 3> ConvectiveMassElement::OpMassJacobian::dot_W

Definition at line 199 of file ConvectiveMassElement.hpp.

◆ dp_dt

VectorBoundedArray<adouble, 3> ConvectiveMassElement::OpMassJacobian::dp_dt

Definition at line 199 of file ConvectiveMassElement.hpp.

◆ F

MatrixBoundedArray<adouble, 9> ConvectiveMassElement::OpMassJacobian::F

Definition at line 200 of file ConvectiveMassElement.hpp.

◆ fieldDisp

bool ConvectiveMassElement::OpMassJacobian::fieldDisp

Definition at line 186 of file ConvectiveMassElement.hpp.

◆ g

MatrixBoundedArray<adouble, 9> ConvectiveMassElement::OpMassJacobian::g

Definition at line 200 of file ConvectiveMassElement.hpp.

◆ G

MatrixBoundedArray<adouble, 9> ConvectiveMassElement::OpMassJacobian::G

Definition at line 200 of file ConvectiveMassElement.hpp.

◆ h

MatrixBoundedArray<adouble, 9> ConvectiveMassElement::OpMassJacobian::h

Definition at line 200 of file ConvectiveMassElement.hpp.

◆ H

MatrixBoundedArray<adouble, 9> ConvectiveMassElement::OpMassJacobian::H

Definition at line 200 of file ConvectiveMassElement.hpp.

◆ i

FTensor::Index<'i', 3> ConvectiveMassElement::OpMassJacobian::i

Definition at line 195 of file ConvectiveMassElement.hpp.

◆ invH

MatrixBoundedArray<adouble, 9> ConvectiveMassElement::OpMassJacobian::invH

Definition at line 200 of file ConvectiveMassElement.hpp.

◆ j

FTensor::Index<'j', 3> ConvectiveMassElement::OpMassJacobian::j

Definition at line 196 of file ConvectiveMassElement.hpp.

◆ jAcobian

bool ConvectiveMassElement::OpMassJacobian::jAcobian

Definition at line 184 of file ConvectiveMassElement.hpp.

◆ k

FTensor::Index<'k', 3> ConvectiveMassElement::OpMassJacobian::k

Definition at line 197 of file ConvectiveMassElement.hpp.

◆ lInear

bool& ConvectiveMassElement::OpMassJacobian::lInear

Definition at line 185 of file ConvectiveMassElement.hpp.

◆ methodsOp

boost::ptr_vector<MethodForForceScaling>& ConvectiveMassElement::OpMassJacobian::methodsOp

Definition at line 188 of file ConvectiveMassElement.hpp.

◆ tAg

int ConvectiveMassElement::OpMassJacobian::tAg

Definition at line 183 of file ConvectiveMassElement.hpp.


The documentation for this struct was generated from the following files: