Set Dirichlet boundary conditions on displacements. More...

#include <users_modules/basic_finite_elements/src/DirichletBC.hpp>

Inheritance diagram for DirichletDisplacementBc:

Collaboration diagram for DirichletDisplacementBc:

Public Member Functions
	DirichletDisplacementBc (MoFEM::Interface &m_field, const std::string &field_name, Mat Aij, Vec X, Vec F, string blockset_name="DISPLACEMENT")

	DirichletDisplacementBc (MoFEM::Interface &m_field, const std::string &field_name, string blockset_name="DISPLACEMENT")

virtual MoFEMErrorCode	iNitialize ()

MoFEMErrorCode	preProcess ()
	function is run at the beginning of loop More...

MoFEMErrorCode	operator() ()
	function is run for every finite element More...

MoFEMErrorCode	postProcess ()
	function is run at the end of loop More...

MoFEMErrorCode	getBcDataFromSetsAndBlocks (std::vector< DataFromBc > &bc_data)
	Get the Bc Data From Sets And Blocks object Use DISPLACEMENT blockset name (default) with 6 atributes: 1,2,3 are values of displacements x,y,z 4,5,6 are flags for x,y,z (0 or 1) More...

MoFEMErrorCode	getRotationBcFromBlock (std::vector< DataFromBc > &bc_data)
	Get the Rotation Bc From Block object Use ROTATION blockset name with 7 atributes: 1,2,3 are x,y,z coords of the center of rotation 4,5,6 are are angular velocities in x,y,z. More...

MoFEMErrorCode	calculateRotationForDof (VectorDouble3 &coords, DataFromBc &bc_data)
	Calculate displacements from rotation for particular dof. More...

MoFEMErrorCode	calculateRotationForDof (EntityHandle ent, DataFromBc &bc_data)

MoFEMErrorCode	applyScaleBcData (DataFromBc &bc_data)

Public Member Functions inherited from MoFEM::FEMethod
MoFEMErrorCode	query_interface (boost::typeindex::type_index type_index, UnknownInterface **iface) const

	FEMethod ()=default

auto	getFEName () const
	get finite element name More...

auto	getDataDofsPtr () const

auto	getDataVectorDofsPtr () const

const FieldEntity_vector_view &	getDataFieldEnts () const

boost::shared_ptr< FieldEntity_vector_view > &	getDataFieldEntsPtr () const

auto &	getRowFieldEnts () const

auto &	getRowFieldEntsPtr () const

auto &	getColFieldEnts () const

auto &	getColFieldEntsPtr () const

auto	getRowDofsPtr () const

auto	getColDofsPtr () const

auto	getNumberOfNodes () const

EntityHandle	getFEEntityHandle () const

MoFEMErrorCode	getNodeData (const std::string field_name, VectorDouble &data, const bool reset_dofs=true)

Public Member Functions inherited from MoFEM::BasicMethod
MoFEMErrorCode	query_interface (boost::typeindex::type_index type_index, UnknownInterface **iface) const

	BasicMethod ()

virtual	~BasicMethod ()=default

int	getNinTheLoop () const
	get number of evaluated element in the loop More...

int	getLoopSize () const
	get loop size More...

auto	getLoHiFERank () const
	Get lo and hi processor rank of iterated entities. More...

auto	getLoFERank () const
	Get upper rank in loop for iterating elements. More...

auto	getHiFERank () const
	Get upper rank in loop for iterating elements. More...

unsigned int	getFieldBitNumber (std::string field_name) const

MoFEMErrorCode	copyBasicMethod (const BasicMethod &basic)
	Copy data from other base method to this base method. More...

virtual MoFEMErrorCode	preProcess ()
	function is run at the beginning of loop More...

virtual MoFEMErrorCode	operator() ()
	function is run for every finite element More...

virtual MoFEMErrorCode	postProcess ()
	function is run at the end of loop More...

boost::weak_ptr< CacheTuple >	getCacheWeakPtr () const
	Get the cache weak ptr object. More...

Public Member Functions inherited from MoFEM::KspMethod
MoFEMErrorCode	query_interface (boost::typeindex::type_index type_index, UnknownInterface **iface) const

	KspMethod ()

virtual	~KspMethod ()=default

MoFEMErrorCode	copyKsp (const KspMethod &ksp)
	copy data form another method More...

Public Member Functions inherited from MoFEM::PetscData
MoFEMErrorCode	query_interface (boost::typeindex::type_index type_index, UnknownInterface **iface) const

	PetscData ()

virtual	~PetscData ()=default

MoFEMErrorCode	copyPetscData (const PetscData &petsc_data)

Public Member Functions inherited from MoFEM::UnknownInterface
virtual MoFEMErrorCode	query_interface (boost::typeindex::type_index type_index, UnknownInterface **iface) const =0

template<class IFACE >
MoFEMErrorCode	registerInterface (bool error_if_registration_failed=true)
	Register interface. More...

template<class IFACE >
MoFEMErrorCode	getInterface (IFACE *&iface) const
	Get interface refernce to pointer of interface. More...

template<class IFACE >
MoFEMErrorCode	getInterface (IFACE **const iface) const
	Get interface pointer to pointer of interface. More...

template<class IFACE , typename boost::enable_if< boost::is_pointer< IFACE >, int >::type = 0>
IFACE	getInterface () const
	Get interface pointer to pointer of interface. More...

template<class IFACE , typename boost::enable_if< boost::is_reference< IFACE >, int >::type = 0>
IFACE	getInterface () const
	Get reference to interface. More...

template<class IFACE >
IFACE *	getInterface () const
	Function returning pointer to interface. More...

virtual	~UnknownInterface ()=default

Public Member Functions inherited from MoFEM::SnesMethod
MoFEMErrorCode	query_interface (boost::typeindex::type_index type_index, UnknownInterface **iface) const

	SnesMethod ()

virtual	~SnesMethod ()=default

MoFEMErrorCode	copySnes (const SnesMethod &snes)
	Copy snes data. More...

Public Member Functions inherited from MoFEM::TSMethod
MoFEMErrorCode	query_interface (boost::typeindex::type_index type_index, UnknownInterface **iface) const

	TSMethod ()

virtual	~TSMethod ()=default

MoFEMErrorCode	copyTs (const TSMethod &ts)
	Copy TS solver data. More...

Public Attributes
MoFEM::Interface &	mField

const std::string	fieldName
	field name to set Dirichlet BC More...

double	dIag
	diagonal value set on zeroed column and rows More...

std::map< DofIdx, FieldData >	mapZeroRows

std::vector< int >	dofsIndices

std::vector< double >	dofsValues

std::vector< double >	dofsXValues

const std::string	blocksetName

boost::ptr_vector< MethodForForceScaling >	methodsOp

Public Attributes inherited from MoFEM::FEMethod
std::string	feName
	Name of finite element. More...

boost::shared_ptr< const NumeredEntFiniteElement >	numeredEntFiniteElementPtr

boost::function< bool(FEMethod *fe_method_ptr)>	exeTestHook
	Tet if element to skip element. More...

Public Attributes inherited from MoFEM::BasicMethod
int	nInTheLoop
	number currently of processed method More...

int	loopSize
	local number oe methods to process More...

std::pair< int, int >	loHiFERank
	Llo and hi processor rank of iterated entities. More...

int	rAnk
	processor rank More...

int	sIze
	number of processors in communicator More...

const RefEntity_multiIndex *	refinedEntitiesPtr
	container of mofem dof entities More...

const RefElement_multiIndex *	refinedFiniteElementsPtr
	container of mofem finite element entities More...

const Problem *	problemPtr
	raw pointer to problem More...

const Field_multiIndex *	fieldsPtr
	raw pointer to fields container More...

const FieldEntity_multiIndex *	entitiesPtr
	raw pointer to container of field entities More...

const DofEntity_multiIndex *	dofsPtr
	raw pointer container of dofs More...

const FiniteElement_multiIndex *	finiteElementsPtr
	raw pointer to container finite elements More...

const EntFiniteElement_multiIndex *	finiteElementsEntitiesPtr

const FieldEntityEntFiniteElementAdjacencyMap_multiIndex *	adjacenciesPtr

boost::function< MoFEMErrorCode()>	preProcessHook
	Hook function for pre-processing. More...

boost::function< MoFEMErrorCode()>	postProcessHook
	Hook function for post-processing. More...

boost::function< MoFEMErrorCode()>	operatorHook
	Hook function for operator. More...

boost::movelib::unique_ptr< bool >	vecAssembleSwitch

boost::movelib::unique_ptr< bool >	matAssembleSwitch

boost::weak_ptr< CacheTuple >	cacheWeakPtr

Public Attributes inherited from MoFEM::KspMethod
KSPContext	ksp_ctx
	Context. More...

KSP	ksp
	KSP solver. More...

Vec &	ksp_f

Mat &	ksp_A

Mat &	ksp_B

Public Attributes inherited from MoFEM::PetscData
Switches	data_ctx

Vec	f

Mat	A

Mat	B

Vec	x

Vec	x_t

Vec	x_tt

Public Attributes inherited from MoFEM::SnesMethod
SNESContext	snes_ctx

SNES	snes
	snes solver More...

Vec &	snes_x
	state vector More...

Vec &	snes_f
	residual More...

Mat &	snes_A
	jacobian matrix More...

Mat &	snes_B
	preconditioner of jacobian matrix More...

Public Attributes inherited from MoFEM::TSMethod
TS	ts
	time solver More...

TSContext	ts_ctx

PetscInt	ts_step
	time step number More...

PetscReal	ts_a
	shift for U_t (see PETSc Time Solver) More...

PetscReal	ts_aa
	shift for U_tt shift for U_tt More...

PetscReal	ts_t
	time More...

PetscReal	ts_dt
	time step size More...

Vec &	ts_u
	state vector More...

Vec &	ts_u_t
	time derivative of state vector More...

Vec &	ts_u_tt
	second time derivative of state vector More...

Vec &	ts_F
	residual vector More...

Mat &	ts_A

Mat &	ts_B
	Preconditioner for ts_A. More...

Additional Inherited Members
Public Types inherited from MoFEM::KspMethod
enum	KSPContext { CTX_SETFUNCTION , CTX_OPERATORS , CTX_KSPNONE }
	pass information about context of KSP/DM for with finite element is computed More...

Public Types inherited from MoFEM::PetscData
enum	DataContext { CTX_SET_NONE = 0 , CTX_SET_F = 1 << 0 , CTX_SET_A = 1 << 1 , CTX_SET_B = 1 << 2 , CTX_SET_X = 1 << 3 , CTX_SET_X_T = 1 << 4 , CTX_SET_X_TT = 1 << 6 , CTX_SET_TIME = 1 << 7 }

using	Switches = std::bitset< 8 >

Public Types inherited from MoFEM::SnesMethod
enum	SNESContext { CTX_SNESSETFUNCTION , CTX_SNESSETJACOBIAN , CTX_SNESNONE }

Public Types inherited from MoFEM::TSMethod
enum	TSContext { CTX_TSSETRHSFUNCTION , CTX_TSSETRHSJACOBIAN , CTX_TSSETIFUNCTION , CTX_TSSETIJACOBIAN , CTX_TSTSMONITORSET , CTX_TSNONE }

Static Public Member Functions inherited from MoFEM::UnknownInterface
static MoFEMErrorCode	getLibVersion (Version &version)
	Get library version. More...

static MoFEMErrorCode	getFileVersion (moab::Interface &moab, Version &version)
	Get database major version. More...

static MoFEMErrorCode	setFileVersion (moab::Interface &moab, Version version=Version(MoFEM_VERSION_MAJOR, MoFEM_VERSION_MINOR, MoFEM_VERSION_BUILD))
	Get database major version. More...

static MoFEMErrorCode	getInterfaceVersion (Version &version)
	Get database major version. More...

Static Public Attributes inherited from MoFEM::PetscData
static constexpr Switches	CtxSetNone = PetscData::Switches(CTX_SET_NONE)

static constexpr Switches	CtxSetF = PetscData::Switches(CTX_SET_F)

static constexpr Switches	CtxSetA = PetscData::Switches(CTX_SET_A)

static constexpr Switches	CtxSetB = PetscData::Switches(CTX_SET_B)

static constexpr Switches	CtxSetX = PetscData::Switches(CTX_SET_X)

static constexpr Switches	CtxSetX_T = PetscData::Switches(CTX_SET_X_T)

static constexpr Switches	CtxSetX_TT = PetscData::Switches(CTX_SET_X_TT)

static constexpr Switches	CtxSetTime = PetscData::Switches(CTX_SET_TIME)

Detailed Description

Set Dirichlet boundary conditions on displacements.

Examples: bone_adaptation.cpp, cell_forces.cpp, elasticity_mixed_formulation.cpp, navier_stokes.cpp, and nonlinear_dynamics.cpp.

Definition at line 57 of file DirichletBC.hpp.

Constructor & Destructor Documentation

◆ DirichletDisplacementBc() [1/2]

DirichletDisplacementBc::DirichletDisplacementBc	(	MoFEM::Interface &	m_field,
		const std::string &	field_name,
		Mat	Aij,
		Vec	X,
		Vec	F,
		string	blockset_name = `"DISPLACEMENT"`
	)

Definition at line 37 of file DirichletBC.cpp.

    : mField(m_field), fieldName(field_name), blocksetName(blockset_name),
      dIag(1) {
  snes_B = Aij;
  snes_x = X;
  snes_f = F;
  ts_B = Aij;
  ts_u = X;
  ts_F = F;
};

◆ DirichletDisplacementBc() [2/2]

DirichletDisplacementBc::DirichletDisplacementBc	(	MoFEM::Interface &	m_field,
		const std::string &	field_name,
		string	blockset_name = `"DISPLACEMENT"`
	)

Definition at line 51 of file DirichletBC.cpp.

    : mField(m_field), fieldName(field_name), blocksetName(blockset_name),
      dIag(1) {
  snes_B = PETSC_NULL;
  snes_x = PETSC_NULL;
  snes_f = PETSC_NULL;
  ts_B = PETSC_NULL;
  ts_u = PETSC_NULL;
  ts_F = PETSC_NULL;
};

Member Function Documentation

◆ applyScaleBcData()

MoFEMErrorCode DirichletDisplacementBc::applyScaleBcData ( DataFromBc & bc_data )

Definition at line 187 of file DirichletBC.cpp.

                                                                            {
  MoFEMFunctionBegin;
 
  bc_data.scaled_values = bc_data.initial_values;
  CHKERR MethodForForceScaling::applyScale(this, methodsOp,
                                           bc_data.scaled_values);
  // for rotation
  bc_data.theta = bc_data.scaled_values[0];
  MoFEMFunctionReturn(0);
}

◆ calculateRotationForDof() [1/2]

MoFEMErrorCode DirichletDisplacementBc::calculateRotationForDof	(	EntityHandle	ent,
		DataFromBc &	bc_data
	)

Definition at line 178 of file DirichletBC.cpp.

                                                                      {
  MoFEMFunctionBegin;
  VectorDouble3 coords(3);
  CHKERR mField.get_moab().get_coords(&ent, 1, &*coords.begin());
  CHKERR calculateRotationForDof(coords, bc_data);
  MoFEMFunctionReturn(0);
}

◆ calculateRotationForDof() [2/2]

MoFEMErrorCode DirichletDisplacementBc::calculateRotationForDof	(	VectorDouble3 &	coords,
		DataFromBc &	bc_data
	)

Calculate displacements from rotation for particular dof.

Parameters

dof
bc_data

Returns: MoFEMErrorCode

Definition at line 168 of file DirichletBC.cpp.

                                                                      {
  MoFEMFunctionBegin;
  if (bc_data.is_rotation) 
    bc_data.scaled_values = get_displacement(coords, bc_data.t_centr,
                                             bc_data.t_normal, bc_data.theta);
  MoFEMFunctionReturn(0);
}

◆ getBcDataFromSetsAndBlocks()

MoFEMErrorCode DirichletDisplacementBc::getBcDataFromSetsAndBlocks ( std::vector< DataFromBc > & bc_data )

Get the Bc Data From Sets And Blocks object Use DISPLACEMENT blockset name (default) with 6 atributes: 1,2,3 are values of displacements x,y,z 4,5,6 are flags for x,y,z (0 or 1)

Parameters

bc_data

Returns: MoFEMErrorCode

Definition at line 64 of file DirichletBC.cpp.

                                    {
 
  MoFEMFunctionBegin;
 
  // Loop over meshsets with Dirichlet boundary condition on displacements
  for (_IT_CUBITMESHSETS_BY_BCDATA_TYPE_FOR_LOOP_(
           mField, NODESET | DISPLACEMENTSET, it)) {
    bc_data.push_back(DataFromBc());
    DisplacementCubitBcData mydata;
    CHKERR bc_data.back().getBcData(mydata, &(*it));
    CHKERR bc_data.back().getEntitiesFromBc(mField, &(*it));
  }
  // Loop over blocksets with DISPLACEMENT (default) boundary condition
  for (_IT_CUBITMESHSETS_BY_SET_TYPE_FOR_LOOP_(mField, BLOCKSET, it)) {
    if (it->getName().compare(0, blocksetName.length(), blocksetName) == 0) {
      bc_data.push_back(DataFromBc());
      std::vector<double> mydata;
      CHKERR bc_data.back().getBcData(mydata, &(*it));
      CHKERR bc_data.back().getEntitiesFromBc(mField, &(*it));
    }
  }
 
  MoFEMFunctionReturn(0);
}

◆ getRotationBcFromBlock()

MoFEMErrorCode DirichletDisplacementBc::getRotationBcFromBlock ( std::vector< DataFromBc > & bc_data )

Get the Rotation Bc From Block object Use ROTATION blockset name with 7 atributes: 1,2,3 are x,y,z coords of the center of rotation 4,5,6 are are angular velocities in x,y,z.

Parameters

bc_data

Returns: MoFEMErrorCode

Definition at line 133 of file DirichletBC.cpp.

                                    {
 
  MoFEMFunctionBegin;
 
  for (_IT_CUBITMESHSETS_BY_SET_TYPE_FOR_LOOP_(mField, BLOCKSET, it)) {
    if (it->getName().compare(0, 8, "ROTATION") == 0) {
      bc_data.push_back(DataFromBc());
      std::vector<double> mydata;
      CHKERR bc_data.back().getEntitiesFromBc(mField, &(*it));
      CHKERR it->getAttributes(mydata);
      if (mydata.size() < 6) {
        SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
                "6 attributes are required for Rotation (3 center coords + 3 "
                "angles, (+ 3 optional) flags for xyz)");
      }
      for (int ii : {0, 1, 2}) {
        bc_data.back().bc_flags[ii] = 1;
        bc_data.back().t_centr(ii) = mydata[ii + 0];
        bc_data.back().t_normal(ii) = mydata[ii + 3];
      }
      if (mydata.size() > 8)
        for (int ii : {0, 1, 2})
          bc_data.back().bc_flags[ii] = mydata[6 + ii];
 
      bc_data.back().scaled_values[0] = bc_data.back().initial_values[0] =
          bc_data.back().t_normal.l2();
      bc_data.back().is_rotation = true;
    }
  }
 
  MoFEMFunctionReturn(0);
}

◆ iNitialize()

MoFEMErrorCode DirichletDisplacementBc::iNitialize ( )

virtual

Reimplemented in AnalyticalDirichletBC::DirichletBC, DirichletSpatialPositionsBc, DirichletTemperatureBc, DirichletFixFieldAtEntitiesBc, and DirichletDisplacementRemoveDofsBc.

Definition at line 198 of file DirichletBC.cpp.

                                                   {
  MoFEMFunctionBegin;
  if (mapZeroRows.empty() || !methodsOp.empty()) {
 
    std::vector<DataFromBc> bcData;
    CHKERR getRotationBcFromBlock(bcData);
    CHKERR getBcDataFromSetsAndBlocks(bcData);
 
    for (auto &bc_it : bcData) {
 
      CHKERR applyScaleBcData(bc_it);
 
      for (int dim = 0; dim < 3; dim++) {
 
        auto for_each_dof = [&](auto &dof) {
          MoFEMFunctionBeginHot;
          if (dof->getEntType() == MBVERTEX) {
            CHKERR calculateRotationForDof(dof->getEnt(), bc_it);
            if (dof->getDofCoeffIdx() == 0 && bc_it.bc_flags[0]) {
              // set boundary values to field data
              mapZeroRows[dof->getPetscGlobalDofIdx()] = bc_it.scaled_values[0];
              dof->getFieldData() = mapZeroRows[dof->getPetscGlobalDofIdx()];
            }
            if (dof->getDofCoeffIdx() == 1 && bc_it.bc_flags[1]) {
              mapZeroRows[dof->getPetscGlobalDofIdx()] = bc_it.scaled_values[1];
              dof->getFieldData() = mapZeroRows[dof->getPetscGlobalDofIdx()];
            }
            if (dof->getDofCoeffIdx() == 2 && bc_it.bc_flags[2]) {
              mapZeroRows[dof->getPetscGlobalDofIdx()] = bc_it.scaled_values[2];
              dof->getFieldData() = mapZeroRows[dof->getPetscGlobalDofIdx()];
            }
 
          } else {
            if (dof->getDofCoeffIdx() == 0 && bc_it.bc_flags[0]) {
              mapZeroRows[dof->getPetscGlobalDofIdx()] = 0;
              dof->getFieldData() = 0;
            }
            if (dof->getDofCoeffIdx() == 1 && bc_it.bc_flags[1]) {
              mapZeroRows[dof->getPetscGlobalDofIdx()] = 0;
              dof->getFieldData() = 0;
            }
            if (dof->getDofCoeffIdx() == 2 && bc_it.bc_flags[2]) {
              mapZeroRows[dof->getPetscGlobalDofIdx()] = 0;
              dof->getFieldData() = 0;
            }
          }
          MoFEMFunctionReturnHot(0);
        };
 
        CHKERR set_numered_dofs_on_ents(problemPtr,
                                        mField.get_field_bit_number(fieldName),
                                        bc_it.bc_ents[dim], for_each_dof);
      }
    }
    dofsIndices.resize(mapZeroRows.size());
    dofsValues.resize(mapZeroRows.size());
    int ii = 0;
    auto mit = mapZeroRows.begin();
    for (; mit != mapZeroRows.end(); mit++, ii++) {
      dofsIndices[ii] = mit->first;
      dofsValues[ii] = mit->second;
    }
  }
  MoFEMFunctionReturn(0);
}

◆ operator()()

MoFEMErrorCode DirichletDisplacementBc::operator() ( )

inlinevirtual

function is run for every finite element

It is used to calculate element local matrices and assembly. It can be used for post-processing.

Reimplemented from MoFEM::BasicMethod.

Reimplemented in DirichletDisplacementRemoveDofsBc.

Definition at line 80 of file DirichletBC.hpp.

80{ return 0; }

◆ postProcess()

MoFEMErrorCode DirichletDisplacementBc::postProcess ( )

virtual

function is run at the end of loop

It is used to assembly matrices and vectors, calculating global variables, f.e. total internal energy, ect.

Iterating over dofs: Example1 iterating over dofs in row by name of the field for(IT_GET_FEROW_BY_NAME_DOFS_FOR_LOOP(this,"DISPLACEMENT",it)) { ... }

Reimplemented from MoFEM::BasicMethod.

Reimplemented in DirichletFixFieldAtEntitiesBc, DirichletDisplacementRemoveDofsBc, and DirichletDensityBc.

Definition at line 281 of file DirichletBC.cpp.

                                                    {
  MoFEMFunctionBegin;
 
  if (snes_ctx == CTX_SNESNONE) {
    if (snes_B) {
      CHKERR MatAssemblyBegin(snes_B, MAT_FINAL_ASSEMBLY);
      CHKERR MatAssemblyEnd(snes_B, MAT_FINAL_ASSEMBLY);
      CHKERR MatZeroRowsColumns(snes_B, dofsIndices.size(),
                                dofsIndices.empty() ? PETSC_NULL
                                                    : &dofsIndices[0],
                                dIag, PETSC_NULL, PETSC_NULL);
    }
    if (snes_f) {
      CHKERR VecAssemblyBegin(snes_f);
      CHKERR VecAssemblyEnd(snes_f);
      for (std::vector<int>::iterator vit = dofsIndices.begin();
           vit != dofsIndices.end(); vit++) {
        CHKERR VecSetValue(snes_f, *vit, 0, INSERT_VALUES);
      }
      CHKERR VecAssemblyBegin(snes_f);
      CHKERR VecAssemblyEnd(snes_f);
    }
  }
 
  switch (snes_ctx) {
  case CTX_SNESNONE:
    break;
  case CTX_SNESSETFUNCTION: {
    if (!dofsIndices.empty()) {
      dofsXValues.resize(dofsIndices.size());
      const double *a_snes_x;
      CHKERR VecGetArrayRead(snes_x, &a_snes_x);
      auto &dofs_by_glob_idx =
          problemPtr->getNumeredColDofsPtr()->get<PetscGlobalIdx_mi_tag>();
      int idx = 0;
      for (auto git : dofsIndices) {
        auto dof_it = dofs_by_glob_idx.find(git);
        if (dof_it != dofs_by_glob_idx.end()) {
          dofsXValues[idx] = a_snes_x[dof_it->get()->getPetscLocalDofIdx()];
          ++idx;
        } else
          SETERRQ1(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
                   "Dof with global %d id not found", git);
      }
      CHKERR VecRestoreArrayRead(snes_x, &a_snes_x);
    }
    CHKERR VecAssemblyBegin(snes_f);
    CHKERR VecAssemblyEnd(snes_f);
 
    if (!dofsIndices.empty()) {
      int ii = 0;
      for (std::vector<int>::iterator vit = dofsIndices.begin();
           vit != dofsIndices.end(); vit++, ii++) {
        double val = 0;
        if (!dofsXValues.empty()) {
          val += dofsXValues[ii];
          val += -mapZeroRows[*vit]; // in snes it is on the left hand side,
                                     // that way -1
          dofsXValues[ii] = val;
        }
      }
      CHKERR VecSetValues(
          snes_f, dofsIndices.size(),
          dofsIndices.empty() ? PETSC_NULL : &*dofsIndices.begin(),
          dofsXValues.empty() ? PETSC_NULL : &*dofsXValues.begin(),
          INSERT_VALUES);
    }
    CHKERR VecAssemblyBegin(snes_f);
    CHKERR VecAssemblyEnd(snes_f);
  } break;
  case CTX_SNESSETJACOBIAN: {
 
    CHKERR MatAssemblyBegin(snes_B, MAT_FINAL_ASSEMBLY);
    CHKERR MatAssemblyEnd(snes_B, MAT_FINAL_ASSEMBLY);
    CHKERR MatZeroRowsColumns(snes_B, dofsIndices.size(),
                              dofsIndices.empty() ? PETSC_NULL
                                                  : &*dofsIndices.begin(),
                              dIag, PETSC_NULL, PETSC_NULL);
 
  } break;
  default:
    SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY, "unknown snes stage");
  }
 
  MoFEMFunctionReturn(0);
}

◆ preProcess()

MoFEMErrorCode DirichletDisplacementBc::preProcess ( )

virtual

function is run at the beginning of loop

It is used to zeroing matrices and vectors, calculation of shape functions on reference element, preprocessing boundary conditions, etc.

Reimplemented from MoFEM::BasicMethod.

Reimplemented in DirichletFixFieldAtEntitiesBc, and DirichletDisplacementRemoveDofsBc.

Definition at line 264 of file DirichletBC.cpp.

                                                   {
  MoFEMFunctionBegin;
 
  CHKERR iNitialize();
 
  if (snes_ctx == CTX_SNESNONE) {
    if (!dofsIndices.empty()) {
      CHKERR VecSetValues(snes_x, dofsIndices.size(), &*dofsIndices.begin(),
                          &*dofsValues.begin(), INSERT_VALUES);
    }
    CHKERR VecAssemblyBegin(snes_x);
    CHKERR VecAssemblyEnd(snes_x);
  }
 
  MoFEMFunctionReturn(0);
}

Member Data Documentation

◆ blocksetName

const std::string DirichletDisplacementBc::blocksetName

Definition at line 74 of file DirichletBC.hpp.

◆ dIag

double DirichletDisplacementBc::dIag

diagonal value set on zeroed column and rows

Definition at line 61 of file DirichletBC.hpp.

◆ dofsIndices

std::vector<int> DirichletDisplacementBc::dofsIndices

Definition at line 71 of file DirichletBC.hpp.

◆ dofsValues

std::vector<double> DirichletDisplacementBc::dofsValues

Definition at line 72 of file DirichletBC.hpp.

◆ dofsXValues

std::vector<double> DirichletDisplacementBc::dofsXValues

Definition at line 73 of file DirichletBC.hpp.

◆ fieldName

const std::string DirichletDisplacementBc::fieldName

field name to set Dirichlet BC

Definition at line 60 of file DirichletBC.hpp.

◆ mapZeroRows

std::map<DofIdx, FieldData> DirichletDisplacementBc::mapZeroRows

Definition at line 70 of file DirichletBC.hpp.

◆ methodsOp

boost::ptr_vector<MethodForForceScaling> DirichletDisplacementBc::methodsOp

Examples: bone_adaptation.cpp.

Definition at line 76 of file DirichletBC.hpp.

◆ mField

MoFEM::Interface& DirichletDisplacementBc::mField

Definition at line 59 of file DirichletBC.hpp.

The documentation for this struct was generated from the following files:

users_modules/basic_finite_elements/src/DirichletBC.hpp
users_modules/basic_finite_elements/src/impl/DirichletBC.cpp

Public Member Functions

Public Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ DirichletDisplacementBc() [1/2]

◆ DirichletDisplacementBc() [2/2]

Member Function Documentation

◆ applyScaleBcData()

◆ calculateRotationForDof() [1/2]

◆ calculateRotationForDof() [2/2]

◆ getBcDataFromSetsAndBlocks()

◆ getRotationBcFromBlock()

◆ iNitialize()

◆ operator()()

◆ postProcess()

◆ preProcess()

Member Data Documentation

◆ blocksetName

◆ dIag

◆ dofsIndices

◆ dofsValues

◆ dofsXValues

◆ fieldName

◆ mapZeroRows

◆ methodsOp

◆ mField