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Classes | Public Member Functions | Public Attributes | List of all members
MixTransport::MixTransportElement::OpSkeleton Struct Reference

calculate jump on entities More...

#include <users_modules/tutorials/cor-0to1/src/MixTransportElement.hpp>

Inheritance diagram for MixTransport::MixTransportElement::OpSkeleton:
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Collaboration diagram for MixTransport::MixTransportElement::OpSkeleton:
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Classes

struct  OpVolSide
 calculate values on adjacent tetrahedra to face More...
 

Public Member Functions

 OpSkeleton (MixTransportElement &ctx, const std::string flux_name)
 
MoFEMErrorCode doWork (int side, EntityType type, EntitiesFieldData::EntData &data)
 
- Public Member Functions inherited from MoFEM::FaceElementForcesAndSourcesCore::UserDataOperator
double getArea ()
 get area of face More...
 
double getMeasure ()
 get measure of element More...
 
VectorDoublegetNormal ()
 get triangle normal More...
 
VectorDoublegetTangent1 ()
 get triangle tangent 1 More...
 
VectorDoublegetTangent2 ()
 get triangle tangent 2 More...
 
auto getFTensor1Normal ()
 get normal as tensor More...
 
auto getFTensor1Tangent1 ()
 get tangentOne as tensor More...
 
auto getFTensor1Tangent2 ()
 get tangentTwo as tensor More...
 
int getNumNodes ()
 get element number of nodes More...
 
const EntityHandlegetConn ()
 get element connectivity More...
 
VectorDoublegetCoords ()
 get triangle coordinates More...
 
auto getFTensor1Coords ()
 get get coords at gauss points More...
 
MatrixDoublegetNormalsAtGaussPts ()
 if higher order geometry return normals at Gauss pts. More...
 
ublas::matrix_row< MatrixDoublegetNormalsAtGaussPts (const int gg)
 if higher order geometry return normals at Gauss pts. More...
 
MatrixDoublegetTangent1AtGaussPts ()
 if higher order geometry return tangent vector to triangle at Gauss pts. More...
 
MatrixDoublegetTangent2AtGaussPts ()
 if higher order geometry return tangent vector to triangle at Gauss pts. More...
 
auto getFTensor1NormalsAtGaussPts ()
 get normal at integration points More...
 
auto getFTensor1Tangent1AtGaussPts ()
 get tangent 1 at integration points More...
 
auto getFTensor1Tangent2AtGaussPts ()
 get tangent 2 at integration points More...
 
FaceElementForcesAndSourcesCoregetFaceFE ()
 return pointer to Generic Triangle Finite Element object More...
 
MoFEMErrorCode loopSideVolumes (const string fe_name, VolumeElementForcesAndSourcesCoreOnSide &fe_method)
 
- Public Member Functions inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
 UserDataOperator (const FieldSpace space, const char type=OPSPACE, const bool symm=true)
 
 UserDataOperator (const std::string field_name, const char type, const bool symm=true)
 
 UserDataOperator (const std::string row_field_name, const std::string col_field_name, const char type, const bool symm=true)
 
boost::shared_ptr< const NumeredEntFiniteElementgetNumeredEntFiniteElementPtr () const
 Return raw pointer to NumeredEntFiniteElement. More...
 
EntityHandle getFEEntityHandle () const
 Return finite element entity handle. More...
 
int getFEDim () const
 Get dimension of finite element. More...
 
EntityType getFEType () const
 Get dimension of finite element. More...
 
boost::weak_ptr< SideNumbergetSideNumberPtr (const int side_number, const EntityType type)
 Get the side number pointer. More...
 
EntityHandle getSideEntity (const int side_number, const EntityType type)
 Get the side entity. More...
 
int getNumberOfNodesOnElement () const
 Get the number of nodes on finite element. More...
 
MoFEMErrorCode getProblemRowIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 Get row indices. More...
 
MoFEMErrorCode getProblemColIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 Get col indices. More...
 
const FEMethodgetFEMethod () const
 Return raw pointer to Finite Element Method object. More...
 
int getOpType () const
 Get operator types. More...
 
void setOpType (const OpType type)
 Set operator type. More...
 
void addOpType (const OpType type)
 Add operator type. More...
 
int getNinTheLoop () const
 get number of finite element in the loop More...
 
int getLoopSize () const
 get size of elements in the loop More...
 
std::string getFEName () const
 Get name of the element. More...
 
ForcesAndSourcesCoregetPtrFE () const
 
ForcesAndSourcesCoregetSidePtrFE () const
 
ForcesAndSourcesCoregetRefinePtrFE () const
 
const PetscData::SwitchesgetDataCtx () const
 
const KspMethod::KSPContext getKSPCtx () const
 
const SnesMethod::SNESContext getSNESCtx () const
 
const TSMethod::TSContext getTSCtx () const
 
Vec getKSPf () const
 
Mat getKSPA () const
 
Mat getKSPB () const
 
Vec getSNESf () const
 
Vec getSNESx () const
 
Mat getSNESA () const
 
Mat getSNESB () const
 
Vec getTSu () const
 
Vec getTSu_t () const
 
Vec getTSu_tt () const
 
Vec getTSf () const
 
Mat getTSA () const
 
Mat getTSB () const
 
int getTSstep () const
 
double getTStime () const
 
double getTStimeStep () const
 
double getTSa () const
 
double getTSaa () const
 
MatrixDoublegetGaussPts ()
 matrix of integration (Gauss) points for Volume Element More...
 
auto getFTensor0IntegrationWeight ()
 Get integration weights. More...
 
MatrixDoublegetCoordsAtGaussPts ()
 Gauss points and weight, matrix (nb. of points x 3) More...
 
auto getFTensor1CoordsAtGaussPts ()
 Get coordinates at integration points assuming linear geometry. More...
 
double getMeasure () const
 get measure of element More...
 
doublegetMeasure ()
 get measure of element More...
 
MoFEMErrorCode loopSide (const string &fe_name, ForcesAndSourcesCore *side_fe, const size_t dim, const EntityHandle ent_for_side=0, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User call this function to loop over elements on the side of face. This function calls finite element with is operator to do calculations. More...
 
MoFEMErrorCode loopThis (const string &fe_name, ForcesAndSourcesCore *parent_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User call this function to loop over parent elements. This function calls finite element with is operator to do calculations. More...
 
MoFEMErrorCode loopParent (const string &fe_name, ForcesAndSourcesCore *parent_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User call this function to loop over parent elements. This function calls finite element with is operator to do calculations. More...
 
MoFEMErrorCode loopChildren (const string &fe_name, ForcesAndSourcesCore *child_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User call this function to loop over parent elements. This function calls finite element with is operator to do calculations. More...
 
- Public Member Functions inherited from MoFEM::DataOperator
 DataOperator (const bool symm=true)
 
virtual ~DataOperator ()=default
 
virtual MoFEMErrorCode doWork (int row_side, int col_side, EntityType row_type, EntityType col_type, EntitiesFieldData::EntData &row_data, EntitiesFieldData::EntData &col_data)
 Operator for bi-linear form, usually to calculate values on left hand side. More...
 
virtual MoFEMErrorCode opLhs (EntitiesFieldData &row_data, EntitiesFieldData &col_data)
 
virtual MoFEMErrorCode doWork (int side, EntityType type, EntitiesFieldData::EntData &data)
 Operator for linear form, usually to calculate values on right hand side. More...
 
virtual MoFEMErrorCode opRhs (EntitiesFieldData &data, const bool error_if_no_base=false)
 
bool getSymm () const
 Get if operator uses symmetry of DOFs or not. More...
 
void setSymm ()
 set if operator is executed taking in account symmetry More...
 
void unSetSymm ()
 unset if operator is executed for non symmetric problem More...
 

Public Attributes

VolumeElementForcesAndSourcesCoreOnSide volSideFe
 volume element to get values from adjacent tets to face More...
 
map< int, VectorDouble > valMap
 
MixTransportElementcTx
 
- Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
char opType
 
std::string rowFieldName
 
std::string colFieldName
 
FieldSpace sPace
 
- Public Attributes inherited from MoFEM::DataOperator
DoWorkLhsHookFunType doWorkLhsHook
 
DoWorkRhsHookFunType doWorkRhsHook
 
bool sYmm
 If true assume that matrix is symmetric structure. More...
 
std::array< bool, MBMAXTYPE > doEntities
 If true operator is executed for entity. More...
 
booldoVertices
 \deprectaed If false skip vertices More...
 
booldoEdges
 \deprectaed If false skip edges More...
 
booldoQuads
 \deprectaed More...
 
booldoTris
 \deprectaed More...
 
booldoTets
 \deprectaed More...
 
booldoPrisms
 \deprectaed More...
 

Additional Inherited Members

- Public Types inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
enum  OpType {
  OPROW = 1 << 0 , OPCOL = 1 << 1 , OPROWCOL = 1 << 2 , OPSPACE = 1 << 3 ,
  OPLAST = 1 << 3
}
 Controls loop over entities on element. More...
 
- Public Types inherited from MoFEM::DataOperator
using DoWorkLhsHookFunType = boost::function< MoFEMErrorCode(DataOperator *op_ptr, int row_side, int col_side, EntityType row_type, EntityType col_type, EntitiesFieldData::EntData &row_data, EntitiesFieldData::EntData &col_data)>
 
using DoWorkRhsHookFunType = boost::function< MoFEMErrorCode(DataOperator *op_ptr, int side, EntityType type, EntitiesFieldData::EntData &data)>
 
- Static Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
static const char *const OpTypeNames []
 
virtual MoFEMErrorCode setPtrFE (ForcesAndSourcesCore *ptr)
 
- Protected Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
ForcesAndSourcesCoreptrFE
 

Detailed Description

calculate jump on entities

Definition at line 1467 of file MixTransportElement.hpp.

Constructor & Destructor Documentation

◆ OpSkeleton()

MixTransport::MixTransportElement::OpSkeleton::OpSkeleton ( MixTransportElement ctx,
const std::string  flux_name 
)
inline

Definition at line 1507 of file MixTransportElement.hpp.

1509 flux_name, UserDataOperator::OPROW),
1510 volSideFe(ctx.mField), cTx(ctx) {
1511 volSideFe.getOpPtrVector().push_back(new OpSkeleton::OpVolSide(valMap));
1512 }
VolumeElementForcesAndSourcesCoreOnSide volSideFe
volume element to get values from adjacent tets to face

Member Function Documentation

◆ doWork()

MoFEMErrorCode MixTransport::MixTransportElement::OpSkeleton::doWork ( int  side,
EntityType  type,
EntitiesFieldData::EntData &  data 
)
inline

Definition at line 1514 of file MixTransportElement.hpp.

1515 {
1517
1518 if (type == MBTRI) {
1519 EntityHandle fe_ent = getNumeredEntFiniteElementPtr()->getEnt();
1520
1521 double def_val = 0;
1522 Tag th_error_jump;
1523 CHKERR cTx.mField.get_moab().tag_get_handle(
1524 "ERROR_JUMP", 1, MB_TYPE_DOUBLE, th_error_jump,
1525 MB_TAG_CREAT | MB_TAG_SPARSE, &def_val);
1526 double *error_jump_ptr;
1527 CHKERR cTx.mField.get_moab().tag_get_by_ptr(
1528 th_error_jump, &fe_ent, 1, (const void **)&error_jump_ptr);
1529 *error_jump_ptr = 0;
1530
1531 // check if this is essential boundary condition
1532 EntityHandle essential_bc_meshset =
1534 if (cTx.mField.get_moab().contains_entities(essential_bc_meshset,
1535 &fe_ent, 1)) {
1536 // essential bc, np jump then, exit and go to next face
1538 }
1539
1540 // calculate values form adjacent tets
1541 valMap.clear();
1543 ;
1544
1545 int nb_gauss_pts = data.getN().size1();
1546
1547 // it is only one face, so it has to be bc natural boundary condition
1548 if (valMap.size() == 1) {
1549 if (static_cast<int>(valMap.begin()->second.size()) != nb_gauss_pts) {
1550 SETERRQ(PETSC_COMM_WORLD, MOFEM_DATA_INCONSISTENCY,
1551 "wrong number of integration points");
1552 }
1553 for (int gg = 0; gg != nb_gauss_pts; gg++) {
1554 const double x = getCoordsAtGaussPts()(gg, 0);
1555 const double y = getCoordsAtGaussPts()(gg, 1);
1556 const double z = getCoordsAtGaussPts()(gg, 2);
1557 double value;
1558 CHKERR cTx.getBcOnValues(fe_ent, gg, x, y, z, value);
1559 double w = getGaussPts()(2, gg);
1560 if (static_cast<int>(getNormalsAtGaussPts().size1()) ==
1561 nb_gauss_pts) {
1562 w *= norm_2(getNormalsAtGaussPts(gg)) * 0.5;
1563 } else {
1564 w *= getArea();
1565 }
1566 *error_jump_ptr += w * pow(value - valMap.begin()->second[gg], 2);
1567 }
1568 } else if (valMap.size() == 2) {
1569 for (int gg = 0; gg != nb_gauss_pts; gg++) {
1570 double w = getGaussPts()(2, gg);
1571 if (getNormalsAtGaussPts().size1() == (unsigned int)nb_gauss_pts) {
1572 w *= norm_2(getNormalsAtGaussPts(gg)) * 0.5;
1573 } else {
1574 w *= getArea();
1575 }
1576 double delta = valMap.at(1)[gg] - valMap.at(-1)[gg];
1577 *error_jump_ptr += w * pow(delta, 2);
1578 }
1579 } else {
1580 SETERRQ1(PETSC_COMM_WORLD, MOFEM_DATA_INCONSISTENCY,
1581 "data inconsistency, wrong number of neighbors "
1582 "valMap.size() = %d",
1583 valMap.size());
1584 }
1585 }
1586
1588 }
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:447
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:346
@ MOFEM_DATA_INCONSISTENCY
Definition: definitions.h:31
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:416
#define CHKERR
Inline error check.
Definition: definitions.h:535
virtual EntityHandle get_finite_element_meshset(const std::string &name) const =0
double w(const double g, const double t)
static constexpr double delta
virtual MoFEMErrorCode getBcOnValues(const EntityHandle ent, const int gg, const double x, const double y, const double z, double &value)
evaluate natural (Dirichlet) boundary conditions
virtual moab::Interface & get_moab()=0
MatrixDouble & getNormalsAtGaussPts()
if higher order geometry return normals at Gauss pts.
MoFEMErrorCode loopSideVolumes(const string fe_name, VolumeElementForcesAndSourcesCoreOnSide &fe_method)
MatrixDouble & getCoordsAtGaussPts()
Gauss points and weight, matrix (nb. of points x 3)
boost::shared_ptr< const NumeredEntFiniteElement > getNumeredEntFiniteElementPtr() const
Return raw pointer to NumeredEntFiniteElement.
MatrixDouble & getGaussPts()
matrix of integration (Gauss) points for Volume Element

Member Data Documentation

◆ cTx

MixTransportElement& MixTransport::MixTransportElement::OpSkeleton::cTx

Definition at line 1505 of file MixTransportElement.hpp.

◆ valMap

map<int, VectorDouble> MixTransport::MixTransportElement::OpSkeleton::valMap

store values at integration point, key of the map is sense of face in respect to adjacent tetrahedra

Definition at line 1478 of file MixTransportElement.hpp.

◆ volSideFe

VolumeElementForcesAndSourcesCoreOnSide MixTransport::MixTransportElement::OpSkeleton::volSideFe

volume element to get values from adjacent tets to face

Definition at line 1473 of file MixTransportElement.hpp.


The documentation for this struct was generated from the following file: