v0.8.17
Classes | Public Member Functions | Public Attributes | List of all members
MixTransport::MixTransportElement::OpSkeleton Struct Reference

calculate jump on entities More...

#include <users_modules/basic_finite_elements/mix_transport/src/MixTransportElement.hpp>

Inheritance diagram for MixTransport::MixTransportElement::OpSkeleton:
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Collaboration diagram for MixTransport::MixTransportElement::OpSkeleton:
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Classes

struct  OpVolSide
 calculate values on adjacent tetrahedra to face More...
 

Public Member Functions

 OpSkeleton (MixTransportElement &ctx, const std::string flux_name)
 
MoFEMErrorCode doWork (int side, EntityType type, DataForcesAndSourcesCore::EntData &data)
 
- Public Member Functions inherited from MoFEM::FaceElementForcesAndSourcesCore::UserDataOperator
 UserDataOperator (const FieldSpace space)
 
 UserDataOperator (const std::string &field_name, const char type)
 
 UserDataOperator (const std::string &row_field_name, const std::string &col_field_name, const char type, const bool symm=true)
 
double getArea ()
 get area of face More...
 
double getMeasure ()
 get measure of element More...
 
VectorDoublegetNormal ()
 get triangle normal More...
 
VectorDoublegetTangent1 ()
 get triangle tangent 1 More...
 
VectorDoublegetTangent2 ()
 get triangle tangent 2 More...
 
auto getFTensor1Normal ()
 get normal as tensor More...
 
DEPRECATED auto getTensor1Normal ()
 
auto getFTensor1Tangent1 ()
 get tangentOne as tensor More...
 
DEPRECATED auto getTensor1Tangent1 ()
 
auto getFTensor2Tangent1 ()
 get tangentTwo as tensor More...
 
DEPRECATED auto getTensor2Tangent1 ()
 
int getNumNodes ()
 get element number of nodes More...
 
const EntityHandlegetConn ()
 get element connectivity More...
 
VectorDoublegetCoords ()
 get triangle coordinates More...
 
auto getFTensor1Coords ()
 get get coords at gauss points More...
 
DEPRECATED auto getTensor1Coords ()
 
MatrixDoublegetCoordsAtGaussPts ()
 Gauss points and weight, matrix (nb. of points x 3) More...
 
auto getFTensor1CoordsAtGaussPts ()
 get coordinates at Gauss pts. More...
 
DEPRECATED auto getTensor1CoordsAtGaussPts ()
 
MatrixDoublegetHoCoordsAtGaussPts ()
 coordinate at Gauss points (if hierarchical approximation of element geometry) More...
 
auto getFTensor1HoCoordsAtGaussPts ()
 get coordinates at Gauss pts (takes in account ho approx. of geometry) More...
 
DEPRECATED auto getTensor1HoCoordsAtGaussPts ()
 
MatrixDoublegetNormalsAtGaussPts ()
 if higher order geometry return normals at Gauss pts. More...
 
DEPRECATED MatrixDoublegetNormalsAtGaussPt ()
 
ublas::matrix_row< MatrixDoublegetNormalsAtGaussPts (const int gg)
 if higher order geometry return normals at Gauss pts. More...
 
DEPRECATED auto getNormalsAtGaussPt (const int gg)
 
MatrixDoublegetTangent1AtGaussPts ()
 if higher order geometry return tangent vector to triangle at Gauss pts. More...
 
DEPRECATED MatrixDoublegetTangent1AtGaussPt ()
 
MatrixDoublegetTangent2AtGaussPts ()
 if higher order geometry return tangent vector to triangle at Gauss pts. More...
 
DEPRECATED MatrixDoublegetTangent2AtGaussPt ()
 
auto getFTensor1NormalsAtGaussPts ()
 get normal at integration points More...
 
DEPRECATED auto getTensor1NormalsAtGaussPt ()
 
auto getFTensor1Tangent1AtGaussPts ()
 get tangent 1 at integration points More...
 
DEPRECATED auto getTensor1Tangent1AtGaussPt ()
 
auto getFTensor1Tangent2AtGaussPts ()
 get tangent 2 at integration points More...
 
DEPRECATED auto getTensor1Tangent2AtGaussPt ()
 
DEPRECATED const FaceElementForcesAndSourcesCoregetFaceElementForcesAndSourcesCore ()
 
DEPRECATED const FaceElementForcesAndSourcesCoregetTriFE ()
 
const FaceElementForcesAndSourcesCoregetFaceFE ()
 return pointer to Generic Triangle Finite Element object More...
 
MoFEMErrorCode loopSideVolumes (const string &fe_name, VolumeElementForcesAndSourcesCoreOnSide &method)
 
- Public Member Functions inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
 UserDataOperator (const FieldSpace space, const char type=OPLAST, const bool symm=true)
 
 UserDataOperator (const std::string &field_name, const char type, const bool symm=true)
 
 UserDataOperator (const std::string &row_field_name, const std::string &col_field_name, const char type, const bool symm=true)
 
virtual ~UserDataOperator ()
 
boost::shared_ptr< const NumeredEntFiniteElementgetNumeredEntFiniteElementPtr () const
 Return raw pointer to NumeredEntFiniteElement. More...
 
EntityHandle getFEEntityHandle () const
 Return finite element entity handle. More...
 
MoFEMErrorCode getProblemRowIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 Get row indices. More...
 
DEPRECATED MoFEMErrorCode getPorblemRowIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 
MoFEMErrorCode getProblemColIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 Get col indices. More...
 
virtual MoFEMErrorCode setPtrFE (ForcesAndSourcesCore *ptr)
 
DEPRECATED MoFEMErrorCode getPorblemColIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 
const FEMethodgetFEMethod () const
 Return raw pointer to Finite Element Method object. More...
 
int getOpType () const
 Get operator types. More...
 
void setOpType (const OpType type)
 Set operator type. More...
 
void addOpType (const OpType type)
 Add operator type. More...
 
int getNinTheLoop () const
 get number of finite element in the loop More...
 
int getLoopSize () const
 get size of elements in the loop More...
 
const std::string & getFEName () const
 Get name of the element. More...
 
Vec getSnesF () const
 
Vec getSnesX () const
 
Mat getSnesA () const
 
Mat getSnesB () const
 
Vec getTSu () const
 
Vec getTSu_t () const
 
Vec getTSf () const
 
Mat getTSA () const
 
Mat getTSB () const
 
int getTSstep () const
 
double getTStime () const
 
double getTSa () const
 
MatrixDoublegetGaussPts ()
 matrix of integration (Gauss) points for Volume Element More...
 
auto getFTensor0IntegrationWeight ()
 Get integration weights. More...
 
- Public Member Functions inherited from MoFEM::DataOperator
 DataOperator (const bool symm=true, const bool do_vertices=true, const bool do_edges=true, const bool do_quads=true, const bool do_tris=true, const bool do_tets=true, const bool do_prisms=true)
 
virtual ~DataOperator ()
 
virtual MoFEMErrorCode doWork (int row_side, int col_side, EntityType row_type, EntityType col_type, DataForcesAndSourcesCore::EntData &row_data, DataForcesAndSourcesCore::EntData &col_data)
 Operator for bi-linear form, usually to calculate values on right hand side. More...
 
virtual MoFEMErrorCode opLhs (DataForcesAndSourcesCore &row_data, DataForcesAndSourcesCore &col_data, bool symm=true)
 
virtual MoFEMErrorCode opLhs (DataForcesAndSourcesCore &row_data, DataForcesAndSourcesCore &col_data)
 
virtual MoFEMErrorCode doWork (int side, EntityType type, DataForcesAndSourcesCore::EntData &data)
 Operator for linear form, usually to calculate values on left hand side. More...
 
virtual MoFEMErrorCode opRhs (DataForcesAndSourcesCore &data, const bool do_vertices, const bool do_edges, const bool do_quads, const bool do_tris, const bool do_tets, const bool do_prisms, const bool error_if_no_base=true)
 
virtual MoFEMErrorCode opRhs (DataForcesAndSourcesCore &data, const bool error_if_no_base=true)
 
bool getSymm () const
 Get if operator uses symmetry of DOFs or not. More...
 
void setSymm ()
 set if operator is executed taking in account symmetry More...
 
void unSetSymm ()
 unset if operator is executed for non symmetric problem More...
 

Public Attributes

VolumeElementForcesAndSourcesCoreOnSide volSideFe
 volume element to get values from adjacent tets to face More...
 
map< int, VectorDouble > valMap
 
MixTransportElementcTx
 
- Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
char opType
 
std::string rowFieldName
 
std::string colFieldName
 
FieldSpace sPace
 
- Public Attributes inherited from MoFEM::DataOperator
bool sYmm
 If true assume that matrix is symmetric structure. More...
 
bool doVertices
 If false skip vertices. More...
 
bool doEdges
 If false skip edges. More...
 
bool doQuads
 
bool doTris
 
bool doTets
 
bool doPrisms
 

Additional Inherited Members

- Public Types inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
enum  OpType { OPROW = 1 << 0, OPCOL = 1 << 1, OPROWCOL = 1 << 2, OPLAST = 1 << 3 }
 Controls loop over entities on element. More...
 
- Protected Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
ForcesAndSourcesCoreptrFE
 

Detailed Description

calculate jump on entities

Definition at line 1512 of file MixTransportElement.hpp.

Constructor & Destructor Documentation

◆ OpSkeleton()

MixTransport::MixTransportElement::OpSkeleton::OpSkeleton ( MixTransportElement ctx,
const std::string  flux_name 
)

Definition at line 1552 of file MixTransportElement.hpp.

1554  flux_name, UserDataOperator::OPROW),
1555  volSideFe(ctx.mField), cTx(ctx) {
1556  volSideFe.getOpPtrVector().push_back(new OpSkeleton::OpVolSide(valMap));
1557  }
VolumeElementForcesAndSourcesCoreOnSide volSideFe
volume element to get values from adjacent tets to face
ForcesAndSourcesCore::UserDataOperator UserDataOperator

Member Function Documentation

◆ doWork()

MoFEMErrorCode MixTransport::MixTransportElement::OpSkeleton::doWork ( int  side,
EntityType  type,
DataForcesAndSourcesCore::EntData &  data 
)

Definition at line 1559 of file MixTransportElement.hpp.

1560  {
1562 
1563  if (type == MBTRI) {
1564  EntityHandle fe_ent = getNumeredEntFiniteElementPtr()->getEnt();
1565 
1566  double def_val = 0;
1567  Tag th_error_jump;
1568  CHKERR cTx.mField.get_moab().tag_get_handle(
1569  "ERROR_JUMP", 1, MB_TYPE_DOUBLE, th_error_jump,
1570  MB_TAG_CREAT | MB_TAG_SPARSE, &def_val);
1571  double *error_jump_ptr;
1572  CHKERR cTx.mField.get_moab().tag_get_by_ptr(
1573  th_error_jump, &fe_ent, 1, (const void **)&error_jump_ptr);
1574  *error_jump_ptr = 0;
1575 
1576  // check if this is essential boundary condition
1577  EntityHandle essential_bc_meshset =
1578  cTx.mField.get_finite_element_meshset("MIX_BCFLUX");
1579  if (cTx.mField.get_moab().contains_entities(essential_bc_meshset,
1580  &fe_ent, 1)) {
1581  // essential bc, np jump then, exit and go to next face
1583  }
1584 
1585  // calculate values form adjacent tets
1586  valMap.clear();
1588  ;
1589 
1590  int nb_gauss_pts = data.getN().size1();
1591 
1592  // it is only one face, so it has to be bc natural boundary condition
1593  if (valMap.size() == 1) {
1594  if (static_cast<int>(valMap.begin()->second.size()) != nb_gauss_pts) {
1595  SETERRQ(PETSC_COMM_WORLD, MOFEM_DATA_INCONSISTENCY,
1596  "wrong number of integration points");
1597  }
1598  for (int gg = 0; gg != nb_gauss_pts; gg++) {
1599  double x, y, z;
1600  if (static_cast<int>(getNormalsAtGaussPts().size1()) ==
1601  nb_gauss_pts) {
1602  x = getHoCoordsAtGaussPts()(gg, 0);
1603  y = getHoCoordsAtGaussPts()(gg, 1);
1604  z = getHoCoordsAtGaussPts()(gg, 2);
1605  } else {
1606  x = getCoordsAtGaussPts()(gg, 0);
1607  y = getCoordsAtGaussPts()(gg, 1);
1608  z = getCoordsAtGaussPts()(gg, 2);
1609  }
1610  double value;
1611  CHKERR cTx.getBcOnValues(fe_ent, gg, x, y, z, value);
1612  ;
1613  double w = getGaussPts()(2, gg);
1614  if (static_cast<int>(getNormalsAtGaussPts().size1()) ==
1615  nb_gauss_pts) {
1616  w *= norm_2(getNormalsAtGaussPts(gg)) * 0.5;
1617  } else {
1618  w *= getArea();
1619  }
1620  *error_jump_ptr += w * pow(value - valMap.begin()->second[gg], 2);
1621  }
1622  } else if (valMap.size() == 2) {
1623  for (int gg = 0; gg != nb_gauss_pts; gg++) {
1624  double w = getGaussPts()(2, gg);
1625  if (getNormalsAtGaussPts().size1() == (unsigned int)nb_gauss_pts) {
1626  w *= norm_2(getNormalsAtGaussPts(gg)) * 0.5;
1627  } else {
1628  w *= getArea();
1629  }
1630  double delta = valMap.at(1)[gg] - valMap.at(-1)[gg];
1631  *error_jump_ptr += w * pow(delta, 2);
1632  }
1633  } else {
1634  SETERRQ1(PETSC_COMM_WORLD, MOFEM_DATA_INCONSISTENCY,
1635  "data inconsistency, wrong number of neighbors "
1636  "valMap.size() = %d",
1637  valMap.size());
1638  }
1639  }
1640 
1642  }
MatrixDouble & getNormalsAtGaussPts()
if higher order geometry return normals at Gauss pts.
virtual moab::Interface & get_moab()=0
MatrixDouble & getHoCoordsAtGaussPts()
coordinate at Gauss points (if hierarchical approximation of element geometry)
boost::shared_ptr< const NumeredEntFiniteElement > getNumeredEntFiniteElementPtr() const
Return raw pointer to NumeredEntFiniteElement.
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return() ...
Definition: definitions.h:467
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return() ...
Definition: definitions.h:498
MatrixDouble & getCoordsAtGaussPts()
Gauss points and weight, matrix (nb. of points x 3)
MoFEMErrorCode loopSideVolumes(const string &fe_name, VolumeElementForcesAndSourcesCoreOnSide &method)
VolumeElementForcesAndSourcesCoreOnSide volSideFe
volume element to get values from adjacent tets to face
MatrixDouble & getGaussPts()
matrix of integration (Gauss) points for Volume Element
#define CHKERR
Inline error check.
Definition: definitions.h:586
virtual EntityHandle get_finite_element_meshset(const std::string &name) const =0
virtual MoFEMErrorCode getBcOnValues(const EntityHandle ent, const int gg, const double x, const double y, const double z, double &value)
evaluate natural (Dirichlet) boundary conditions
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:404

Member Data Documentation

◆ cTx

MixTransportElement& MixTransport::MixTransportElement::OpSkeleton::cTx

Definition at line 1550 of file MixTransportElement.hpp.

◆ valMap

map<int, VectorDouble> MixTransport::MixTransportElement::OpSkeleton::valMap

store values at integration point, key of the map is sense of face in respect to adjacent tetrahedra

Definition at line 1523 of file MixTransportElement.hpp.

◆ volSideFe

VolumeElementForcesAndSourcesCoreOnSide MixTransport::MixTransportElement::OpSkeleton::volSideFe

volume element to get values from adjacent tets to face

Definition at line 1518 of file MixTransportElement.hpp.


The documentation for this struct was generated from the following file: