Assemble \(\int_\mathcal{T} \mathbf{A} \boldsymbol\sigma \cdot \boldsymbol\tau \textrm{d}\mathcal{T}\). More...

#include <users_modules/tutorials/cor-0to1/src/MixTransportElement.hpp>

Inheritance diagram for MixTransport::MixTransportElement::OpTauDotSigma_HdivHdiv:

Collaboration diagram for MixTransport::MixTransportElement::OpTauDotSigma_HdivHdiv:

Public Member Functions
	OpTauDotSigma_HdivHdiv (MixTransportElement &ctx, const std::string flux_name, Mat aij, Vec f)

MoFEMErrorCode	doWork (int row_side, int col_side, EntityType row_type, EntityType col_type, EntitiesFieldData::EntData &row_data, EntitiesFieldData::EntData &col_data)
	Assemble matrix. More...

MoFEMErrorCode	doWork (int side, EntityType type, EntitiesFieldData::EntData &data)
	Assemble matrix. More...

Public Member Functions inherited from MoFEM::VolumeElementForcesAndSourcesCore::UserDataOperator
int	getNumNodes ()
	get element number of nodes More...

const EntityHandle *	getConn ()
	get element connectivity More...

double	getVolume () const
	element volume (linear geometry) More...

double &	getVolume ()
	element volume (linear geometry) More...

FTensor::Tensor2< double *, 3, 3 > &	getJac ()
	get element Jacobian More...

FTensor::Tensor2< double *, 3, 3 > &	getInvJac ()
	get element inverse Jacobian More...

VectorDouble &	getCoords ()
	nodal coordinates More...

VolumeElementForcesAndSourcesCore *	getVolumeFE () const
	return pointer to Generic Volume Finite Element object More...

Public Member Functions inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
	UserDataOperator (const FieldSpace space, const char type=OPSPACE, const bool symm=true)

	UserDataOperator (const std::string field_name, const char type, const bool symm=true)

	UserDataOperator (const std::string row_field_name, const std::string col_field_name, const char type, const bool symm=true)

boost::shared_ptr< const NumeredEntFiniteElement >	getNumeredEntFiniteElementPtr () const
	Return raw pointer to NumeredEntFiniteElement. More...

EntityHandle	getFEEntityHandle () const
	Return finite element entity handle. More...

int	getFEDim () const
	Get dimension of finite element. More...

EntityType	getFEType () const
	Get dimension of finite element. More...

boost::weak_ptr< SideNumber >	getSideNumberPtr (const int side_number, const EntityType type)
	Get the side number pointer. More...

EntityHandle	getSideEntity (const int side_number, const EntityType type)
	Get the side entity. More...

int	getNumberOfNodesOnElement () const
	Get the number of nodes on finite element. More...

MoFEMErrorCode	getProblemRowIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
	Get row indices. More...

MoFEMErrorCode	getProblemColIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
	Get col indices. More...

const FEMethod *	getFEMethod () const
	Return raw pointer to Finite Element Method object. More...

int	getOpType () const
	Get operator types. More...

void	setOpType (const OpType type)
	Set operator type. More...

void	addOpType (const OpType type)
	Add operator type. More...

int	getNinTheLoop () const
	get number of finite element in the loop More...

int	getLoopSize () const
	get size of elements in the loop More...

std::string	getFEName () const
	Get name of the element. More...

ForcesAndSourcesCore *	getPtrFE () const

ForcesAndSourcesCore *	getSidePtrFE () const

ForcesAndSourcesCore *	getRefinePtrFE () const

const PetscData::Switches &	getDataCtx () const

const KspMethod::KSPContext	getKSPCtx () const

const SnesMethod::SNESContext	getSNESCtx () const

const TSMethod::TSContext	getTSCtx () const

Vec	getKSPf () const

Mat	getKSPA () const

Mat	getKSPB () const

Vec	getSNESf () const

Vec	getSNESx () const

Mat	getSNESA () const

Mat	getSNESB () const

Vec	getTSu () const

Vec	getTSu_t () const

Vec	getTSu_tt () const

Vec	getTSf () const

Mat	getTSA () const

Mat	getTSB () const

int	getTSstep () const

double	getTStime () const

double	getTStimeStep () const

double	getTSa () const

double	getTSaa () const

MatrixDouble &	getGaussPts ()
	matrix of integration (Gauss) points for Volume Element More...

auto	getFTensor0IntegrationWeight ()
	Get integration weights. More...

MatrixDouble &	getCoordsAtGaussPts ()
	Gauss points and weight, matrix (nb. of points x 3) More...

auto	getFTensor1CoordsAtGaussPts ()
	Get coordinates at integration points assuming linear geometry. More...

double	getMeasure () const
	get measure of element More...

double &	getMeasure ()
	get measure of element More...

MoFEMErrorCode	loopSide (const string &fe_name, ForcesAndSourcesCore *side_fe, const size_t dim, const EntityHandle ent_for_side=0, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
	User call this function to loop over elements on the side of face. This function calls finite element with is operator to do calculations. More...

MoFEMErrorCode	loopThis (const string &fe_name, ForcesAndSourcesCore *parent_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
	User call this function to loop over parent elements. This function calls finite element with is operator to do calculations. More...

MoFEMErrorCode	loopParent (const string &fe_name, ForcesAndSourcesCore *parent_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
	User call this function to loop over parent elements. This function calls finite element with is operator to do calculations. More...

MoFEMErrorCode	loopChildren (const string &fe_name, ForcesAndSourcesCore *child_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
	User call this function to loop over parent elements. This function calls finite element with is operator to do calculations. More...

Public Member Functions inherited from MoFEM::DataOperator
	DataOperator (const bool symm=true)

virtual	~DataOperator ()=default

virtual MoFEMErrorCode	doWork (int row_side, int col_side, EntityType row_type, EntityType col_type, EntitiesFieldData::EntData &row_data, EntitiesFieldData::EntData &col_data)
	Operator for bi-linear form, usually to calculate values on left hand side. More...

virtual MoFEMErrorCode	opLhs (EntitiesFieldData &row_data, EntitiesFieldData &col_data)

virtual MoFEMErrorCode	doWork (int side, EntityType type, EntitiesFieldData::EntData &data)
	Operator for linear form, usually to calculate values on right hand side. More...

virtual MoFEMErrorCode	opRhs (EntitiesFieldData &data, const bool error_if_no_base=false)

bool	getSymm () const
	Get if operator uses symmetry of DOFs or not. More...

void	setSymm ()
	set if operator is executed taking in account symmetry More...

void	unSetSymm ()
	unset if operator is executed for non symmetric problem More...

Public Attributes
MixTransportElement &	cTx

Mat	Aij

Vec	F

MatrixDouble	NN

MatrixDouble	transNN

MatrixDouble3by3	invK

VectorDouble	Nf

Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
char	opType

std::string	rowFieldName

std::string	colFieldName

FieldSpace	sPace

Public Attributes inherited from MoFEM::DataOperator
DoWorkLhsHookFunType	doWorkLhsHook

DoWorkRhsHookFunType	doWorkRhsHook

bool	sYmm
	If true assume that matrix is symmetric structure. More...

std::array< bool, MBMAXTYPE >	doEntities
	If true operator is executed for entity. More...

bool &	doVertices
	\deprectaed If false skip vertices More...

bool &	doEdges
	\deprectaed If false skip edges More...

bool &	doQuads
	\deprectaed More...

bool &	doTris
	\deprectaed More...

bool &	doTets
	\deprectaed More...

bool &	doPrisms
	\deprectaed More...

Additional Inherited Members
Public Types inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
enum	OpType { OPROW = 1 << 0 , OPCOL = 1 << 1 , OPROWCOL = 1 << 2 , OPSPACE = 1 << 3 , OPLAST = 1 << 3 }
	Controls loop over entities on element. More...

Public Types inherited from MoFEM::DataOperator
using	DoWorkLhsHookFunType = boost::function< MoFEMErrorCode(DataOperator *op_ptr, int row_side, int col_side, EntityType row_type, EntityType col_type, EntitiesFieldData::EntData &row_data, EntitiesFieldData::EntData &col_data)>

using	DoWorkRhsHookFunType = boost::function< MoFEMErrorCode(DataOperator *op_ptr, int side, EntityType type, EntitiesFieldData::EntData &data)>

Static Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
static const char *const	OpTypeNames []

Protected Member Functions inherited from MoFEM::VolumeElementForcesAndSourcesCore::UserDataOperator
MoFEMErrorCode	setPtrFE (ForcesAndSourcesCore *ptr)

virtual MoFEMErrorCode	setPtrFE (ForcesAndSourcesCore *ptr)

Protected Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
ForcesAndSourcesCore *	ptrFE

Detailed Description

Assemble \(\int_\mathcal{T} \mathbf{A} \boldsymbol\sigma \cdot \boldsymbol\tau \textrm{d}\mathcal{T}\).

Definition at line 719 of file MixTransportElement.hpp.

Constructor & Destructor Documentation

◆ OpTauDotSigma_HdivHdiv()

MixTransport::MixTransportElement::OpTauDotSigma_HdivHdiv::OpTauDotSigma_HdivHdiv	(	MixTransportElement &	ctx,
		const std::string	flux_name,
		Mat	aij,
		Vec	f
	)

inline

Definition at line 726 of file MixTransportElement.hpp.

        : MoFEM::VolumeElementForcesAndSourcesCore::UserDataOperator(
              flux_name, flux_name,
              UserDataOperator::OPROWCOL | UserDataOperator::OPCOL),
          cTx(ctx), Aij(aij), F(f) {
      sYmm = true;
    }

Member Function Documentation

◆ doWork() [1/2]

MoFEMErrorCode MixTransport::MixTransportElement::OpTauDotSigma_HdivHdiv::doWork	(	int	row_side,
		int	col_side,
		EntityType	row_type,
		EntityType	col_type,
		EntitiesFieldData::EntData &	row_data,
		EntitiesFieldData::EntData &	col_data
	)

inline

Assemble matrix.

Parameters

row_side	local index of row entity on element
col_side	local index of col entity on element
row_type	type of row entity, f.e. MBVERTEX, MBEDGE, or MBTET
col_type	type of col entity, f.e. MBVERTEX, MBEDGE, or MBTET
row_data	data for row
col_data	data for col

Returns: error code

Definition at line 749 of file MixTransportElement.hpp.

                                                              {
      MoFEMFunctionBegin;
      if (Aij == PETSC_NULL)
        MoFEMFunctionReturnHot(0);
      if (row_data.getIndices().size() == 0)
        MoFEMFunctionReturnHot(0);
      if (col_data.getIndices().size() == 0)
        MoFEMFunctionReturnHot(0);
      EntityHandle fe_ent = getNumeredEntFiniteElementPtr()->getEnt();
      int nb_row = row_data.getIndices().size();
      int nb_col = col_data.getIndices().size();
      NN.resize(nb_row, nb_col, false);
      NN.clear();
      FTensor::Index<'i', 3> i;
      FTensor::Index<'j', 3> j;
      invK.resize(3, 3, false);
      // get access to resistivity data by tensor rank 2
      FTensor::Tensor2<double *, 3, 3> t_inv_k(
          &invK(0, 0), &invK(0, 1), &invK(0, 2), &invK(1, 0), &invK(1, 1),
          &invK(1, 2), &invK(2, 0), &invK(2, 1), &invK(2, 2));
      // Get base functions
      auto t_n_hdiv_row = row_data.getFTensor1N<3>();
      FTensor::Tensor1<double, 3> t_row;
      int nb_gauss_pts = row_data.getN().size1();
      for (int gg = 0; gg != nb_gauss_pts; gg++) {
        // get integration weight and multiply by element volume
        double w = getGaussPts()(3, gg) * getVolume();
        const double x = getCoordsAtGaussPts()(gg, 0);
        const double y = getCoordsAtGaussPts()(gg, 1);
        const double z = getCoordsAtGaussPts()(gg, 2);
        // calculate receptivity (invers of conductivity)
        CHKERR cTx.getResistivity(fe_ent, x, y, z, invK);
        for (int kk = 0; kk != nb_row; kk++) {
          FTensor::Tensor1<const double *, 3> t_n_hdiv_col(
              &col_data.getVectorN<3>(gg)(0, HVEC0),
              &col_data.getVectorN<3>(gg)(0, HVEC1),
              &col_data.getVectorN<3>(gg)(0, HVEC2), 3);
          t_row(j) = w * t_n_hdiv_row(i) * t_inv_k(i, j);
          for (int ll = 0; ll != nb_col; ll++) {
            NN(kk, ll) += t_row(j) * t_n_hdiv_col(j);
            ++t_n_hdiv_col;
          }
          ++t_n_hdiv_row;
        }
      }
      Mat a = (Aij != PETSC_NULL) ? Aij : getFEMethod()->ts_B;
      CHKERR MatSetValues(a, nb_row, &row_data.getIndices()[0], nb_col,
                          &col_data.getIndices()[0], &NN(0, 0), ADD_VALUES);
      // matrix is symmetric, assemble other part
      if (row_side != col_side || row_type != col_type) {
        transNN.resize(nb_col, nb_row);
        noalias(transNN) = trans(NN);
        CHKERR MatSetValues(a, nb_col, &col_data.getIndices()[0], nb_row,
                            &row_data.getIndices()[0], &transNN(0, 0),
                            ADD_VALUES);
      }
 
      MoFEMFunctionReturn(0);
    }

◆ doWork() [2/2]

MoFEMErrorCode MixTransport::MixTransportElement::OpTauDotSigma_HdivHdiv::doWork	(	int	side,
		EntityType	type,
		EntitiesFieldData::EntData &	data
	)

inline

Assemble matrix.

Parameters

side	local index of row entity on element
type	type of row entity, f.e. MBVERTEX, MBEDGE, or MBTET
data	data for row

Returns: error code

Definition at line 819 of file MixTransportElement.hpp.

                                                          {
      MoFEMFunctionBegin;
      if (F == PETSC_NULL)
        MoFEMFunctionReturnHot(0);
      int nb_row = data.getIndices().size();
      if (nb_row == 0)
        MoFEMFunctionReturnHot(0);
 
      EntityHandle fe_ent = getNumeredEntFiniteElementPtr()->getEnt();
      Nf.resize(nb_row);
      Nf.clear();
      FTensor::Index<'i', 3> i;
      FTensor::Index<'j', 3> j;
      invK.resize(3, 3, false);
      Nf.resize(nb_row);
      Nf.clear();
      // get access to resistivity data by tensor rank 2
      FTensor::Tensor2<double *, 3, 3> t_inv_k(
          &invK(0, 0), &invK(0, 1), &invK(0, 2), &invK(1, 0), &invK(1, 1),
          &invK(1, 2), &invK(2, 0), &invK(2, 1), &invK(2, 2));
      // get base functions
      auto t_n_hdiv = data.getFTensor1N<3>();
      auto t_flux = getFTensor1FromMat<3>(cTx.fluxesAtGaussPts);
      int nb_gauss_pts = data.getN().size1();
      for (int gg = 0; gg < nb_gauss_pts; gg++) {
        double w = getGaussPts()(3, gg) * getVolume();
        const double x = getCoordsAtGaussPts()(gg, 0);
        const double y = getCoordsAtGaussPts()(gg, 1);
        const double z = getCoordsAtGaussPts()(gg, 2);
        CHKERR cTx.getResistivity(fe_ent, x, y, z, invK);
        for (int ll = 0; ll != nb_row; ll++) {
          Nf[ll] += w * t_n_hdiv(i) * t_inv_k(i, j) * t_flux(j);
          ++t_n_hdiv;
        }
        ++t_flux;
      }
      CHKERR VecSetValues(F, nb_row, &data.getIndices()[0], &Nf[0], ADD_VALUES);
 
      MoFEMFunctionReturn(0);
    }

Member Data Documentation

◆ Aij

Mat MixTransport::MixTransportElement::OpTauDotSigma_HdivHdiv::Aij

Definition at line 723 of file MixTransportElement.hpp.

◆ cTx

MixTransportElement& MixTransport::MixTransportElement::OpTauDotSigma_HdivHdiv::cTx

Definition at line 722 of file MixTransportElement.hpp.

◆ F

Vec MixTransport::MixTransportElement::OpTauDotSigma_HdivHdiv::F

Definition at line 724 of file MixTransportElement.hpp.

◆ invK

MatrixDouble3by3 MixTransport::MixTransportElement::OpTauDotSigma_HdivHdiv::invK

Definition at line 736 of file MixTransportElement.hpp.

◆ Nf

VectorDouble MixTransport::MixTransportElement::OpTauDotSigma_HdivHdiv::Nf

Definition at line 737 of file MixTransportElement.hpp.

◆ NN

MatrixDouble MixTransport::MixTransportElement::OpTauDotSigma_HdivHdiv::NN

Definition at line 735 of file MixTransportElement.hpp.

◆ transNN

MatrixDouble MixTransport::MixTransportElement::OpTauDotSigma_HdivHdiv::transNN

Definition at line 735 of file MixTransportElement.hpp.

The documentation for this struct was generated from the following file:

users_modules/tutorials/cor-0to1/src/MixTransportElement.hpp

Public Member Functions

Public Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ OpTauDotSigma_HdivHdiv()

Member Function Documentation

◆ doWork() [1/2]

◆ doWork() [2/2]

Member Data Documentation

◆ Aij

◆ cTx

◆ F

◆ invK

◆ Nf

◆ NN

◆ transNN