v0.9.0
Public Member Functions | Public Attributes | List of all members
MixTransport::UnsaturatedFlowElement::MonitorPostProc Struct Reference

#include <users_modules/basic_finite_elements/mix_transport/src/UnsaturatedFlow.hpp>

Inheritance diagram for MixTransport::UnsaturatedFlowElement::MonitorPostProc:
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Collaboration diagram for MixTransport::UnsaturatedFlowElement::MonitorPostProc:
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Public Member Functions

 MonitorPostProc (UnsaturatedFlowElement &ctx, boost::shared_ptr< PostProcVolumeOnRefinedMesh > &post_proc, boost::shared_ptr< ForcesAndSourcesCore > flux_Integrate, const int frequency)
 
MoFEMErrorCode preProcess ()
 function is run at the beginning of loop More...
 
MoFEMErrorCode operator() ()
 function is run for every finite element More...
 
MoFEMErrorCode postProcess ()
 function is run at the end of loop More...
 
- Public Member Functions inherited from MoFEM::FEMethod
MoFEMErrorCode query_interface (const MOFEMuuid &uuid, UnknownInterface **iface) const
 
 FEMethod ()
 
template<class MULTIINDEX >
MULTIINDEX::iterator get_begin (const MULTIINDEX &index, const std::string &field_name, const EntityType type, const int side_number) const
 
template<class MULTIINDEX >
MULTIINDEX::iterator get_end (const MULTIINDEX &index, const std::string &field_name, const EntityType type, const int side_number) const
 
template<class MULTIINDEX >
MULTIINDEX::iterator get_begin (const MULTIINDEX &index, const std::string &field_name, const EntityType type) const
 
template<class MULTIINDEX >
MULTIINDEX::iterator get_end (const MULTIINDEX &index, const std::string &field_name, const EntityType type) const
 
template<class MULTIINDEX >
MULTIINDEX::iterator get_begin (const MULTIINDEX &index, const std::string &field_name) const
 
template<class MULTIINDEX >
MULTIINDEX::iterator get_end (const MULTIINDEX &index, const std::string &field_name) const
 
template<class MULTIINDEX >
MULTIINDEX::iterator get_begin (const MULTIINDEX &index, const EntityHandle ent) const
 
template<class MULTIINDEX >
MULTIINDEX::iterator get_end (const MULTIINDEX &index, const EntityHandle ent) const
 
template<class MULTIINDEX >
MULTIINDEX::iterator get_begin (const MULTIINDEX &index, const std::string &field_name, const EntityHandle ent) const
 
template<class MULTIINDEX >
MULTIINDEX::iterator get_end (const MULTIINDEX &index, const std::string &field_name, const EntityHandle ent) const
 
- Public Member Functions inherited from MoFEM::BasicMethod
 BasicMethod ()
 
virtual ~BasicMethod ()
 
int getNinTheLoop () const
 get number of evaluated element in the loop More...
 
int getLoopSize () const
 get loop size More...
 
MoFEMErrorCode copyBasicMethod (const BasicMethod &basic)
 Copy data from other base method to this base method. More...
 
- Public Member Functions inherited from MoFEM::KspMethod
 KspMethod ()
 
virtual ~KspMethod ()
 
MoFEMErrorCode setKspCtx (const KSPContext &ctx)
 set operator type More...
 
MoFEMErrorCode setKsp (KSP ksp)
 set solver More...
 
MoFEMErrorCode copyKsp (const KspMethod &ksp)
 copy data form another method More...
 
- Public Member Functions inherited from MoFEM::UnknownInterface
template<class IFACE >
MoFEMErrorCode registerInterface (const MOFEMuuid &uuid, bool error_if_registration_failed=true)
 Register interface. More...
 
template<class IFACE , bool VERIFY = false>
MoFEMErrorCode getInterface (const MOFEMuuid &uuid, IFACE *&iface) const
 Get interface by uuid and return reference to pointer of interface. More...
 
template<class IFACE >
MoFEMErrorCode getInterface (IFACE *&iface) const
 Get interface refernce to pointer of interface. More...
 
template<class IFACE >
MoFEMErrorCode getInterface (IFACE **const iface) const
 Get interface pointer to pointer of interface. More...
 
template<class IFACE , typename boost::enable_if< boost::is_pointer< IFACE >, int >::type = 0>
IFACE getInterface () const
 Get interface pointer to pointer of interface. More...
 
template<class IFACE , typename boost::enable_if< boost::is_reference< IFACE >, int >::type = 0>
IFACE getInterface () const
 Get reference to interface. More...
 
template<class IFACE >
IFACE * getInterface () const
 Function returning pointer to interface. More...
 
virtual ~UnknownInterface ()=default
 
virtual MoFEMErrorCode getLibVersion (Version &version) const
 Get library version. More...
 
virtual const MoFEMErrorCode getFileVersion (moab::Interface &moab, Version &version) const
 Get database major version. More...
 
virtual MoFEMErrorCode getInterfaceVersion (Version &version) const
 Get database major version. More...
 
template<>
MoFEMErrorCode getInterface (const MOFEMuuid &uuid, UnknownInterface *&iface) const
 
- Public Member Functions inherited from MoFEM::SnesMethod
 SnesMethod ()
 
virtual ~SnesMethod ()
 
MoFEMErrorCode setSnesCtx (const SNESContext &ctx)
 Set SNES context. More...
 
MoFEMErrorCode setSnes (SNES snes)
 Set SNES instance. More...
 
MoFEMErrorCode copySnes (const SnesMethod &snes)
 Copy snes data. More...
 
- Public Member Functions inherited from MoFEM::TSMethod
 TSMethod ()
 
virtual ~TSMethod ()
 
MoFEMErrorCode setTsCtx (const TSContext &ctx)
 Set Ts context. More...
 
MoFEMErrorCode copyTs (const TSMethod &ts)
 Copy TS solver data. More...
 
MoFEMErrorCode setTs (TS _ts)
 Set TS solver. More...
 

Public Attributes

UnsaturatedFlowElementcTx
 
boost::shared_ptr< PostProcVolumeOnRefinedMeshpostProc
 
boost::shared_ptr< ForcesAndSourcesCore > fluxIntegrate
 
const int fRequency
 
- Public Attributes inherited from MoFEM::FEMethod
std::string feName
 Name of finite element. More...
 
boost::shared_ptr< const NumeredEntFiniteElementnumeredEntFiniteElementPtr
 
boost::shared_ptr< const FENumeredDofEntity_multiIndexrowPtr
 Pointer to finite element rows dofs view. More...
 
boost::shared_ptr< const FENumeredDofEntity_multiIndexcolPtr
 Pointer to finite element columns dofs view. More...
 
boost::shared_ptr< const FEDofEntity_multiIndexdataPtr
 Pointer to finite element data dofs. More...
 
boost::shared_ptr< const FieldEntity_vector_viewrowFieldEntsPtr
 Pointer to finite element field entities row view. More...
 
boost::shared_ptr< const FieldEntity_vector_viewcolFieldEntsPtr
 Pointer to finite element field entities column view. More...
 
boost::shared_ptr< const FieldEntity_multiIndex_spaceType_viewdataFieldEntsPtr
 Pointer to finite element field entities data view. More...
 
- Public Attributes inherited from MoFEM::BasicMethod
int nInTheLoop
 number currently of processed method More...
 
int loopSize
 local number oe methods to process More...
 
int rAnk
 processor rank More...
 
int sIze
 number of processors in communicator More...
 
const RefEntity_multiIndexrefinedEntitiesPtr
 container of mofem dof entities More...
 
const RefElement_multiIndexrefinedFiniteElementsPtr
 container of mofem finite element entities More...
 
const ProblemproblemPtr
 raw pointer to problem More...
 
const Field_multiIndexfieldsPtr
 raw pointer to fields container More...
 
const FieldEntity_multiIndexentitiesPtr
 raw pointer to container of field entities More...
 
const DofEntity_multiIndexdofsPtr
 raw pointer container of dofs More...
 
const FiniteElement_multiIndexfiniteElementsPtr
 raw pointer to container finite elements More...
 
const EntFiniteElement_multiIndexfiniteElementsEntitiesPtr
 
const FieldEntityEntFiniteElementAdjacencyMap_multiIndexadjacenciesPtr
 
boost::function< MoFEMErrorCode()> preProcessHook
 Hook function for pre-processing. More...
 
boost::function< MoFEMErrorCode()> postProcessHook
 Hook function for post-processing. More...
 
boost::function< MoFEMErrorCode()> operatorHook
 Hook function for operator. More...
 
boost::movelib::unique_ptr< boolvecAssembleSwitch
 
boost::movelib::unique_ptr< boolmatAssembleSwitch
 
- Public Attributes inherited from MoFEM::KspMethod
KSPContext ksp_ctx
 Context. More...
 
KSP ksp
 KSP solver. More...
 
Vec ksp_f
 the right hand side vector More...
 
Mat ksp_A
 matrix More...
 
Mat ksp_B
 preconditioner matrix More...
 
- Public Attributes inherited from MoFEM::SnesMethod
SNESContext snes_ctx
 
SNES snes
 snes solver More...
 
Vec snes_x
 state vector More...
 
Vec snes_f
 residual More...
 
Mat snes_A
 jacobian matrix More...
 
Mat snes_B
 preconditioner of jacobian matrix More...
 
- Public Attributes inherited from MoFEM::TSMethod
TSContext ts_ctx
 
TS ts
 time solver More...
 
Vec ts_u
 state vector More...
 
Vec ts_u_t
 time derivative of state vector More...
 
Vec ts_u_tt
 second time derivative of state vector More...
 
Vec ts_F
 residual vector More...
 
Mat ts_A
 
Mat ts_B
 Preconditioner for ts_A. More...
 
PetscInt ts_step
 time step More...
 
PetscReal ts_a
 shift for U_tt (see PETSc Time Solver) More...
 
PetscReal ts_v
 shift for U_t shift for U_t More...
 
PetscReal ts_t
 time More...
 

Additional Inherited Members

- Public Types inherited from MoFEM::KspMethod
enum  KSPContext { CTX_SETFUNCTION, CTX_OPERATORS, CTX_KSPNONE }
 pass information about context of KSP/DM for with finite element is computed More...
 
- Public Types inherited from MoFEM::SnesMethod
enum  SNESContext { CTX_SNESSETFUNCTION, CTX_SNESSETJACOBIAN, CTX_SNESNONE }
 
- Public Types inherited from MoFEM::TSMethod
enum  TSContext {
  CTX_TSSETRHSFUNCTION, CTX_TSSETRHSJACOBIAN, CTX_TSSETIFUNCTION, CTX_TSSETIJACOBIAN,
  CTX_TSTSMONITORSET, CTX_TSNONE
}
 
- Protected Member Functions inherited from MoFEM::UnknownInterface
boost::typeindex::type_index getClassIdx (const MOFEMuuid &uid) const
 Get type name for interface Id. More...
 
MOFEMuuid getUId (const boost::typeindex::type_index &class_idx) const
 Get interface Id for class name. More...
 

Detailed Description

Finite element implementation called by TS monitor. Element calls other finite elements to evaluate material properties and save results on the mesh.

Note
Element overloaded only FEMethod::postProcess methos where other elements are called.

Definition at line 1057 of file UnsaturatedFlow.hpp.

Constructor & Destructor Documentation

◆ MonitorPostProc()

MixTransport::UnsaturatedFlowElement::MonitorPostProc::MonitorPostProc ( UnsaturatedFlowElement ctx,
boost::shared_ptr< PostProcVolumeOnRefinedMesh > &  post_proc,
boost::shared_ptr< ForcesAndSourcesCore >  flux_Integrate,
const int  frequency 
)
Examples
UnsaturatedFlow.hpp.

Definition at line 1065 of file UnsaturatedFlow.hpp.

1069  : cTx(ctx), postProc(post_proc), fluxIntegrate(flux_Integrate),
1070  fRequency(frequency) {}
boost::shared_ptr< ForcesAndSourcesCore > fluxIntegrate
const int fRequency
boost::shared_ptr< PostProcVolumeOnRefinedMesh > postProc
UnsaturatedFlowElement & cTx

Member Function Documentation

◆ operator()()

MoFEMErrorCode MixTransport::UnsaturatedFlowElement::MonitorPostProc::operator() ( )
virtual

function is run for every finite element

It is used to calculate element local matrices and assembly. It can be used for post-processing.

Reimplemented from MoFEM::BasicMethod.

Examples
UnsaturatedFlow.hpp.

Definition at line 1077 of file UnsaturatedFlow.hpp.

1077  {
1080  }
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:477
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:407

◆ postProcess()

MoFEMErrorCode MixTransport::UnsaturatedFlowElement::MonitorPostProc::postProcess ( )
virtual

function is run at the end of loop

It is used to assembly matrices and vectors, calculating global variables, f.e. total internal energy, ect.

Iterating over dofs: Example1 iterating over dofs in row by name of the field for(IT_GET_FEROW_BY_NAME_DOFS_FOR_LOOP(this,"DISPLACEMENT",it)) { ... }

Reimplemented from MoFEM::BasicMethod.

Examples
UnsaturatedFlow.hpp.

Definition at line 1082 of file UnsaturatedFlow.hpp.

1082  {
1084 
1085  // Get time step
1086  int step;
1087  CHKERR TSGetTimeStepNumber(ts, &step);
1088 
1089  if ((step) % fRequency == 0) {
1090  // Post-process results and save in the file
1091  PetscPrintf(PETSC_COMM_WORLD, "Output results %d - %d\n", step,
1092  fRequency);
1094  CHKERR postProc->writeFile(
1095  string("out_") + boost::lexical_cast<std::string>(step) + ".h5m");
1096  }
1097 
1098  // Integrate fluxes on faces where pressure head is applied
1099  CHKERR VecZeroEntries(cTx.ghostFlux);
1100  CHKERR VecGhostUpdateBegin(cTx.ghostFlux, INSERT_VALUES, SCATTER_FORWARD);
1101  CHKERR VecGhostUpdateEnd(cTx.ghostFlux, INSERT_VALUES, SCATTER_FORWARD);
1102  // Run finite element to integrate fluxes
1104  CHKERR VecAssemblyBegin(cTx.ghostFlux);
1105  CHKERR VecAssemblyEnd(cTx.ghostFlux);
1106  // accumulate errors from processors
1107  CHKERR VecGhostUpdateBegin(cTx.ghostFlux, ADD_VALUES, SCATTER_REVERSE);
1108  CHKERR VecGhostUpdateEnd(cTx.ghostFlux, ADD_VALUES, SCATTER_REVERSE);
1109  // scatter errors to all processors
1110  CHKERR VecGhostUpdateBegin(cTx.ghostFlux, INSERT_VALUES, SCATTER_FORWARD);
1111  CHKERR VecGhostUpdateEnd(cTx.ghostFlux, INSERT_VALUES, SCATTER_FORWARD);
1112  double *ghost_flux;
1113  CHKERR VecGetArray(cTx.ghostFlux, &ghost_flux);
1114  CHKERR PetscPrintf(PETSC_COMM_WORLD, "Flux at time %6.4g %6.4g\n", ts_t,
1115  ghost_flux[0]);
1116  CHKERR VecRestoreArray(cTx.ghostFlux, &ghost_flux);
1117 
1119  }
Vec ghostFlux
Ghost Vector of integrated fluxes.
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:477
boost::shared_ptr< ForcesAndSourcesCore > fluxIntegrate
PetscErrorCode DMoFEMLoopFiniteElements(DM dm, const char fe_name[], MoFEM::FEMethod *method)
Executes FEMethod for finite elements in DM.
Definition: DMMMoFEM.cpp:496
PetscReal ts_t
time
const int fRequency
TS ts
time solver
#define CHKERR
Inline error check.
Definition: definitions.h:596
boost::shared_ptr< PostProcVolumeOnRefinedMesh > postProc
DM dM
Discrete manager for unsaturated flow problem.
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:407
UnsaturatedFlowElement & cTx

◆ preProcess()

MoFEMErrorCode MixTransport::UnsaturatedFlowElement::MonitorPostProc::preProcess ( )
virtual

function is run at the beginning of loop

It is used to zeroing matrices and vectors, calculation of shape functions on reference element, preprocessing boundary conditions, etc.

Reimplemented from MoFEM::BasicMethod.

Examples
UnsaturatedFlow.hpp.

Definition at line 1072 of file UnsaturatedFlow.hpp.

1072  {
1075  }
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:477
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:407

Member Data Documentation

◆ cTx

UnsaturatedFlowElement& MixTransport::UnsaturatedFlowElement::MonitorPostProc::cTx
Examples
UnsaturatedFlow.hpp.

Definition at line 1059 of file UnsaturatedFlow.hpp.

◆ fluxIntegrate

boost::shared_ptr<ForcesAndSourcesCore> MixTransport::UnsaturatedFlowElement::MonitorPostProc::fluxIntegrate
Examples
UnsaturatedFlow.hpp.

Definition at line 1061 of file UnsaturatedFlow.hpp.

◆ fRequency

const int MixTransport::UnsaturatedFlowElement::MonitorPostProc::fRequency
Examples
UnsaturatedFlow.hpp.

Definition at line 1063 of file UnsaturatedFlow.hpp.

◆ postProc

boost::shared_ptr<PostProcVolumeOnRefinedMesh> MixTransport::UnsaturatedFlowElement::MonitorPostProc::postProc
Examples
UnsaturatedFlow.hpp.

Definition at line 1060 of file UnsaturatedFlow.hpp.


The documentation for this struct was generated from the following file: