v0.9.1
Public Member Functions | Public Attributes | List of all members
MixTransport::UnsaturatedFlowElement::MonitorPostProc Struct Reference

#include <users_modules/basic_finite_elements/mix_transport/src/UnsaturatedFlow.hpp>

Inheritance diagram for MixTransport::UnsaturatedFlowElement::MonitorPostProc:
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Collaboration diagram for MixTransport::UnsaturatedFlowElement::MonitorPostProc:
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Public Member Functions

 MonitorPostProc (UnsaturatedFlowElement &ctx, boost::shared_ptr< PostProcVolumeOnRefinedMesh > &post_proc, boost::shared_ptr< ForcesAndSourcesCore > flux_Integrate, const int frequency)
 
MoFEMErrorCode preProcess ()
 function is run at the beginning of loop More...
 
MoFEMErrorCode operator() ()
 function is run for every finite element More...
 
MoFEMErrorCode postProcess ()
 function is run at the end of loop More...
 
- Public Member Functions inherited from MoFEM::FEMethod
MoFEMErrorCode query_interface (const MOFEMuuid &uuid, UnknownInterface **iface) const
 
 FEMethod ()
 
MoFEMErrorCode getNumberOfNodes (int &num_nodes) const
 Get number of DOFs on element. More...
 
EntityHandle getFEEntityHandle () const
 
MoFEMErrorCode getNodeData (const std::string field_name, VectorDouble &data, const bool reset_dofs=true)
 
template<class MULTIINDEX >
MULTIINDEX::iterator get_begin (const MULTIINDEX &index, const std::string &field_name, const EntityType type) const
 
template<class MULTIINDEX >
MULTIINDEX::iterator get_end (const MULTIINDEX &index, const std::string &field_name, const EntityType type) const
 
template<class MULTIINDEX >
MULTIINDEX::iterator get_begin (const MULTIINDEX &index, const std::string &field_name) const
 
template<class MULTIINDEX >
MULTIINDEX::iterator get_end (const MULTIINDEX &index, const std::string &field_name) const
 
- Public Member Functions inherited from MoFEM::BasicMethod
 BasicMethod ()
 
virtual ~BasicMethod ()=default
 
int getNinTheLoop () const
 get number of evaluated element in the loop More...
 
int getLoopSize () const
 get loop size More...
 
MoFEMErrorCode copyBasicMethod (const BasicMethod &basic)
 Copy data from other base method to this base method. More...
 
- Public Member Functions inherited from MoFEM::KspMethod
 KspMethod ()
 
virtual ~KspMethod ()=default
 
MoFEMErrorCode copyKsp (const KspMethod &ksp)
 copy data form another method More...
 
- Public Member Functions inherited from MoFEM::PetscData
 PetscData ()
 
virtual ~PetscData ()=default
 
- Public Member Functions inherited from MoFEM::UnknownInterface
template<class IFACE >
MoFEMErrorCode registerInterface (const MOFEMuuid &uuid, bool error_if_registration_failed=true)
 Register interface. More...
 
template<class IFACE , bool VERIFY = false>
MoFEMErrorCode getInterface (const MOFEMuuid &uuid, IFACE *&iface) const
 Get interface by uuid and return reference to pointer of interface. More...
 
template<class IFACE >
MoFEMErrorCode getInterface (IFACE *&iface) const
 Get interface refernce to pointer of interface. More...
 
template<class IFACE >
MoFEMErrorCode getInterface (IFACE **const iface) const
 Get interface pointer to pointer of interface. More...
 
template<class IFACE , typename boost::enable_if< boost::is_pointer< IFACE >, int >::type = 0>
IFACE getInterface () const
 Get interface pointer to pointer of interface. More...
 
template<class IFACE , typename boost::enable_if< boost::is_reference< IFACE >, int >::type = 0>
IFACE getInterface () const
 Get reference to interface. More...
 
template<class IFACE >
IFACE * getInterface () const
 Function returning pointer to interface. More...
 
virtual ~UnknownInterface ()=default
 
virtual MoFEMErrorCode getLibVersion (Version &version) const
 Get library version. More...
 
virtual const MoFEMErrorCode getFileVersion (moab::Interface &moab, Version &version) const
 Get database major version. More...
 
virtual MoFEMErrorCode getInterfaceVersion (Version &version) const
 Get database major version. More...
 
template<>
MoFEMErrorCode getInterface (const MOFEMuuid &uuid, UnknownInterface *&iface) const
 
- Public Member Functions inherited from MoFEM::SnesMethod
 SnesMethod ()
 
virtual ~SnesMethod ()=default
 
MoFEMErrorCode copySnes (const SnesMethod &snes)
 Copy snes data. More...
 
DEPRECATED MoFEMErrorCode setSnesCtx (SNESContext ctx)
 
- Public Member Functions inherited from MoFEM::TSMethod
 TSMethod ()
 
virtual ~TSMethod ()=default
 
MoFEMErrorCode copyTs (const TSMethod &ts)
 Copy TS solver data. More...
 
DEPRECATED MoFEMErrorCode setTsCtx (TSContext ctx)
 

Public Attributes

UnsaturatedFlowElementcTx
 
boost::shared_ptr< PostProcVolumeOnRefinedMeshpostProc
 
boost::shared_ptr< ForcesAndSourcesCore > fluxIntegrate
 
const int fRequency
 
- Public Attributes inherited from MoFEM::FEMethod
std::string feName
 Name of finite element. More...
 
boost::shared_ptr< const NumeredEntFiniteElementnumeredEntFiniteElementPtr
 
boost::shared_ptr< const FENumeredDofEntity_multiIndexrowPtr
 Pointer to finite element rows dofs view. More...
 
boost::shared_ptr< const FENumeredDofEntity_multiIndexcolPtr
 Pointer to finite element columns dofs view. More...
 
boost::shared_ptr< const FEDofEntity_multiIndexdataPtr
 Pointer to finite element data dofs. More...
 
boost::shared_ptr< const FieldEntity_vector_viewrowFieldEntsPtr
 Pointer to finite element field entities row view. More...
 
boost::shared_ptr< const FieldEntity_vector_viewcolFieldEntsPtr
 Pointer to finite element field entities column view. More...
 
boost::shared_ptr< const FieldEntity_multiIndex_spaceType_viewdataFieldEntsPtr
 Pointer to finite element field entities data view. More...
 
- Public Attributes inherited from MoFEM::BasicMethod
int nInTheLoop
 number currently of processed method More...
 
int loopSize
 local number oe methods to process More...
 
int rAnk
 processor rank More...
 
int sIze
 number of processors in communicator More...
 
const RefEntity_multiIndexrefinedEntitiesPtr
 container of mofem dof entities More...
 
const RefElement_multiIndexrefinedFiniteElementsPtr
 container of mofem finite element entities More...
 
const ProblemproblemPtr
 raw pointer to problem More...
 
const Field_multiIndexfieldsPtr
 raw pointer to fields container More...
 
const FieldEntity_multiIndexentitiesPtr
 raw pointer to container of field entities More...
 
const DofEntity_multiIndexdofsPtr
 raw pointer container of dofs More...
 
const FiniteElement_multiIndexfiniteElementsPtr
 raw pointer to container finite elements More...
 
const EntFiniteElement_multiIndexfiniteElementsEntitiesPtr
 
const FieldEntityEntFiniteElementAdjacencyMap_multiIndexadjacenciesPtr
 
boost::function< MoFEMErrorCode()> preProcessHook
 Hook function for pre-processing. More...
 
boost::function< MoFEMErrorCode()> postProcessHook
 Hook function for post-processing. More...
 
boost::function< MoFEMErrorCode()> operatorHook
 Hook function for operator. More...
 
boost::movelib::unique_ptr< boolvecAssembleSwitch
 
boost::movelib::unique_ptr< boolmatAssembleSwitch
 
- Public Attributes inherited from MoFEM::KspMethod
KSPContext ksp_ctx
 Context. More...
 
KSP ksp
 KSP solver. More...
 
Vec & ksp_f
 
Mat & ksp_A
 
Mat & ksp_B
 
- Public Attributes inherited from MoFEM::PetscData
Switches data_ctx
 
Vec f
 
Mat A
 
Mat B
 
Vec x
 
Vec x_t
 
Vec x_tt
 
- Public Attributes inherited from MoFEM::SnesMethod
SNESContext snes_ctx
 
SNES snes
 snes solver More...
 
Vec & snes_x
 state vector More...
 
Vec & snes_f
 residual More...
 
Mat & snes_A
 jacobian matrix More...
 
Mat & snes_B
 preconditioner of jacobian matrix More...
 
- Public Attributes inherited from MoFEM::TSMethod
TS ts
 time solver More...
 
TSContext ts_ctx
 
PetscInt ts_step
 time step More...
 
PetscReal ts_a
 shift for U_tt (see PETSc Time Solver) More...
 
PetscReal ts_v
 shift for U_t shift for U_t More...
 
PetscReal ts_t
 time More...
 
Vec & ts_u
 state vector More...
 
Vec & ts_u_t
 time derivative of state vector More...
 
Vec & ts_u_tt
 second time derivative of state vector More...
 
Vec & ts_F
 residual vector More...
 
Mat & ts_A
 
Mat & ts_B
 Preconditioner for ts_A. More...
 

Additional Inherited Members

- Public Types inherited from MoFEM::KspMethod
enum  KSPContext { CTX_SETFUNCTION, CTX_OPERATORS, CTX_KSPNONE }
 pass information about context of KSP/DM for with finite element is computed More...
 
- Public Types inherited from MoFEM::PetscData
enum  DataContext {
  CTX_SET_NONE = 0, CTX_SET_F = 1 << 0, CTX_SET_A = 1 << 1, CTX_SET_B = 1 << 2,
  CTX_SET_X = 1 << 3, CTX_SET_X_T = 1 << 4, CTX_SET_X_TT = 1 << 6, CTX_SET_TIME = 1 << 7
}
 
using Switches = std::bitset< 8 >
 
- Public Types inherited from MoFEM::SnesMethod
enum  SNESContext { CTX_SNESSETFUNCTION, CTX_SNESSETJACOBIAN, CTX_SNESNONE }
 
- Public Types inherited from MoFEM::TSMethod
enum  TSContext {
  CTX_TSSETRHSFUNCTION, CTX_TSSETRHSJACOBIAN, CTX_TSSETIFUNCTION, CTX_TSSETIJACOBIAN,
  CTX_TSTSMONITORSET, CTX_TSNONE
}
 
- Static Public Attributes inherited from MoFEM::PetscData
static constexpr Switches CtxSetNone = PetscData::Switches(CTX_SET_NONE)
 
static constexpr Switches CtxSetF = PetscData::Switches(CTX_SET_F)
 
static constexpr Switches CtxSetA = PetscData::Switches(CTX_SET_A)
 
static constexpr Switches CtxSetB = PetscData::Switches(CTX_SET_B)
 
static constexpr Switches CtxSetX = PetscData::Switches(CTX_SET_X)
 
static constexpr Switches CtxSetX_T = PetscData::Switches(CTX_SET_X_T)
 
static constexpr Switches CtxSetX_TT = PetscData::Switches(CTX_SET_X_TT)
 
static constexpr Switches CtxSetTime = PetscData::Switches(CTX_SET_TIME)
 
- Protected Member Functions inherited from MoFEM::UnknownInterface
boost::typeindex::type_index getClassIdx (const MOFEMuuid &uid) const
 Get type name for interface Id. More...
 
MOFEMuuid getUId (const boost::typeindex::type_index &class_idx) const
 Get interface Id for class name. More...
 

Detailed Description

Finite element implementation called by TS monitor. Element calls other finite elements to evaluate material properties and save results on the mesh.

Note
Element overloaded only FEMethod::postProcess methos where other elements are called.

Definition at line 1059 of file UnsaturatedFlow.hpp.

Constructor & Destructor Documentation

◆ MonitorPostProc()

MixTransport::UnsaturatedFlowElement::MonitorPostProc::MonitorPostProc ( UnsaturatedFlowElement ctx,
boost::shared_ptr< PostProcVolumeOnRefinedMesh > &  post_proc,
boost::shared_ptr< ForcesAndSourcesCore >  flux_Integrate,
const int  frequency 
)
Examples
UnsaturatedFlow.hpp.

Definition at line 1067 of file UnsaturatedFlow.hpp.

1071  : cTx(ctx), postProc(post_proc), fluxIntegrate(flux_Integrate),
1072  fRequency(frequency) {}
boost::shared_ptr< ForcesAndSourcesCore > fluxIntegrate
const int fRequency
boost::shared_ptr< PostProcVolumeOnRefinedMesh > postProc
UnsaturatedFlowElement & cTx

Member Function Documentation

◆ operator()()

MoFEMErrorCode MixTransport::UnsaturatedFlowElement::MonitorPostProc::operator() ( )
virtual

function is run for every finite element

It is used to calculate element local matrices and assembly. It can be used for post-processing.

Reimplemented from MoFEM::BasicMethod.

Examples
UnsaturatedFlow.hpp.

Definition at line 1079 of file UnsaturatedFlow.hpp.

1079  {
1082  }
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:483
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:413

◆ postProcess()

MoFEMErrorCode MixTransport::UnsaturatedFlowElement::MonitorPostProc::postProcess ( )
virtual

function is run at the end of loop

It is used to assembly matrices and vectors, calculating global variables, f.e. total internal energy, ect.

Iterating over dofs: Example1 iterating over dofs in row by name of the field for(IT_GET_FEROW_BY_NAME_DOFS_FOR_LOOP(this,"DISPLACEMENT",it)) { ... }

Reimplemented from MoFEM::BasicMethod.

Examples
UnsaturatedFlow.hpp.

Definition at line 1084 of file UnsaturatedFlow.hpp.

1084  {
1086 
1087  // Get time step
1088  int step;
1089  CHKERR TSGetTimeStepNumber(ts, &step);
1090 
1091  if ((step) % fRequency == 0) {
1092  // Post-process results and save in the file
1093  PetscPrintf(PETSC_COMM_WORLD, "Output results %d - %d\n", step,
1094  fRequency);
1096  CHKERR postProc->writeFile(
1097  string("out_") + boost::lexical_cast<std::string>(step) + ".h5m");
1098  }
1099 
1100  // Integrate fluxes on faces where pressure head is applied
1101  CHKERR VecZeroEntries(cTx.ghostFlux);
1102  CHKERR VecGhostUpdateBegin(cTx.ghostFlux, INSERT_VALUES, SCATTER_FORWARD);
1103  CHKERR VecGhostUpdateEnd(cTx.ghostFlux, INSERT_VALUES, SCATTER_FORWARD);
1104  // Run finite element to integrate fluxes
1106  CHKERR VecAssemblyBegin(cTx.ghostFlux);
1107  CHKERR VecAssemblyEnd(cTx.ghostFlux);
1108  // accumulate errors from processors
1109  CHKERR VecGhostUpdateBegin(cTx.ghostFlux, ADD_VALUES, SCATTER_REVERSE);
1110  CHKERR VecGhostUpdateEnd(cTx.ghostFlux, ADD_VALUES, SCATTER_REVERSE);
1111  // scatter errors to all processors
1112  CHKERR VecGhostUpdateBegin(cTx.ghostFlux, INSERT_VALUES, SCATTER_FORWARD);
1113  CHKERR VecGhostUpdateEnd(cTx.ghostFlux, INSERT_VALUES, SCATTER_FORWARD);
1114  double *ghost_flux;
1115  CHKERR VecGetArray(cTx.ghostFlux, &ghost_flux);
1116  CHKERR PetscPrintf(PETSC_COMM_WORLD, "Flux at time %6.4g %6.4g\n", ts_t,
1117  ghost_flux[0]);
1118  CHKERR VecRestoreArray(cTx.ghostFlux, &ghost_flux);
1119 
1121  }
Vec ghostFlux
Ghost Vector of integrated fluxes.
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:483
boost::shared_ptr< ForcesAndSourcesCore > fluxIntegrate
PetscErrorCode DMoFEMLoopFiniteElements(DM dm, const char fe_name[], MoFEM::FEMethod *method)
Executes FEMethod for finite elements in DM.
Definition: DMMMoFEM.cpp:507
PetscReal ts_t
time
const int fRequency
TS ts
time solver
#define CHKERR
Inline error check.
Definition: definitions.h:602
boost::shared_ptr< PostProcVolumeOnRefinedMesh > postProc
DM dM
Discrete manager for unsaturated flow problem.
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:413
UnsaturatedFlowElement & cTx

◆ preProcess()

MoFEMErrorCode MixTransport::UnsaturatedFlowElement::MonitorPostProc::preProcess ( )
virtual

function is run at the beginning of loop

It is used to zeroing matrices and vectors, calculation of shape functions on reference element, preprocessing boundary conditions, etc.

Reimplemented from MoFEM::BasicMethod.

Examples
UnsaturatedFlow.hpp.

Definition at line 1074 of file UnsaturatedFlow.hpp.

1074  {
1077  }
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:483
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:413

Member Data Documentation

◆ cTx

UnsaturatedFlowElement& MixTransport::UnsaturatedFlowElement::MonitorPostProc::cTx
Examples
UnsaturatedFlow.hpp.

Definition at line 1061 of file UnsaturatedFlow.hpp.

◆ fluxIntegrate

boost::shared_ptr<ForcesAndSourcesCore> MixTransport::UnsaturatedFlowElement::MonitorPostProc::fluxIntegrate
Examples
UnsaturatedFlow.hpp.

Definition at line 1063 of file UnsaturatedFlow.hpp.

◆ fRequency

const int MixTransport::UnsaturatedFlowElement::MonitorPostProc::fRequency
Examples
UnsaturatedFlow.hpp.

Definition at line 1065 of file UnsaturatedFlow.hpp.

◆ postProc

boost::shared_ptr<PostProcVolumeOnRefinedMesh> MixTransport::UnsaturatedFlowElement::MonitorPostProc::postProc
Examples
UnsaturatedFlow.hpp.

Definition at line 1062 of file UnsaturatedFlow.hpp.


The documentation for this struct was generated from the following file: