v0.9.1
Public Member Functions | Public Attributes | List of all members
MixTransport::UnsaturatedFlowElement::OpPostProcMaterial Struct Reference

#include <users_modules/basic_finite_elements/mix_transport/src/UnsaturatedFlow.hpp>

Inheritance diagram for MixTransport::UnsaturatedFlowElement::OpPostProcMaterial:
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Collaboration diagram for MixTransport::UnsaturatedFlowElement::OpPostProcMaterial:
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Public Member Functions

 OpPostProcMaterial (UnsaturatedFlowElement &ctx, moab::Interface &post_proc_mesh, std::vector< EntityHandle > &map_gauss_pts, const std::string field_name)
 
MoFEMErrorCode doWork (int side, EntityType type, DataForcesAndSourcesCore::EntData &data)
 
- Public Member Functions inherited from MoFEM::VolumeElementForcesAndSourcesCoreBase::UserDataOperator
int getNumNodes ()
 get element number of nodes More...
 
const EntityHandlegetConn ()
 get element connectivity More...
 
double getVolume () const
 element volume (linear geometry) More...
 
doublegetVolume ()
 element volume (linear geometry) More...
 
FTensor::Tensor2< double *, 3, 3 > & getJac ()
 get element Jacobian More...
 
FTensor::Tensor2< double *, 3, 3 > & getInvJac ()
 get element inverse Jacobian More...
 
double getMeasure () const
 get measure of element More...
 
doublegetMeasure ()
 get measure of element More...
 
VectorDoublegetCoords ()
 nodal coordinates More...
 
MatrixDoublegetCoordsAtGaussPts ()
 Gauss points and weight, matrix (nb. of points x 3) More...
 
MatrixDoublegetHoCoordsAtGaussPts ()
 coordinate at Gauss points (if hierarchical approximation of element geometry) More...
 
MatrixDoublegetHoGaussPtsJac ()
 
MatrixDoublegetHoGaussPtsInvJac ()
 
VectorDoublegetHoGaussPtsDetJac ()
 
auto getFTenosr0HoMeasure ()
 
auto getFTensor1CoordsAtGaussPts ()
 Get coordinates at integration points assuming linear geometry. More...
 
auto getFTensor1HoCoordsAtGaussPts ()
 Get coordinates at integration points taking geometry from field. More...
 
auto getFTensor2HoGaussPtsJac ()
 
auto getFTensor2HoGaussPtsInvJac ()
 
VolumeElementForcesAndSourcesCoreBasegetVolumeFE () const
 return pointer to Generic Volume Finite Element object More...
 
MoFEMErrorCode getDivergenceOfHDivBaseFunctions (int side, EntityType type, DataForcesAndSourcesCore::EntData &data, int gg, VectorDouble &div)
 Get divergence of base functions at integration point. More...
 
MoFEMErrorCode getCurlOfHCurlBaseFunctions (int side, EntityType type, DataForcesAndSourcesCore::EntData &data, int gg, MatrixDouble &curl)
 Get curl of base functions at integration point. More...
 
- Public Member Functions inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
 UserDataOperator (const FieldSpace space, const char type=OPLAST, const bool symm=true)
 
 UserDataOperator (const std::string &field_name, const char type, const bool symm=true)
 
 UserDataOperator (const std::string &row_field_name, const std::string &col_field_name, const char type, const bool symm=true)
 
boost::shared_ptr< const NumeredEntFiniteElementgetNumeredEntFiniteElementPtr () const
 Return raw pointer to NumeredEntFiniteElement. More...
 
EntityHandle getFEEntityHandle () const
 Return finite element entity handle. More...
 
boost::weak_ptr< SideNumber > getSideNumberPtr (const int side_number, const EntityType type)
 Get the side number pointer. More...
 
EntityHandle getSideEntity (const int side_number, const EntityType type)
 Get the side entity. More...
 
int getNumberOfNodesOnElement ()
 Get the number of nodes on finite element. More...
 
MoFEMErrorCode getProblemRowIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 Get row indices. More...
 
MoFEMErrorCode getProblemColIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 Get col indices. More...
 
const FEMethodgetFEMethod () const
 Return raw pointer to Finite Element Method object. More...
 
int getOpType () const
 Get operator types. More...
 
void setOpType (const OpType type)
 Set operator type. More...
 
void addOpType (const OpType type)
 Add operator type. More...
 
int getNinTheLoop () const
 get number of finite element in the loop More...
 
int getLoopSize () const
 get size of elements in the loop More...
 
const std::string & getFEName () const
 Get name of the element. More...
 
const PetscData::SwitchesgetDataCtx () const
 
const KspMethod::KSPContext getKSPCtx () const
 
const SnesMethod::SNESContext getSNESCtx () const
 
const TSMethod::TSContext getTSCtx () const
 
Vec getKSPf () const
 
Mat getKSPA () const
 
Mat getKSPB () const
 
Vec getSNESf () const
 
Vec getSNESx () const
 
Mat getSNESA () const
 
Mat getSNESB () const
 
DEPRECATED Vec getSnesF () const
 
DEPRECATED Vec getSnesX () const
 
DEPRECATED Mat getSnesA () const
 
DEPRECATED Mat getSnesB () const
 
Vec getTSu () const
 
Vec getTSu_t () const
 
Vec getTSu_tt () const
 
Vec getTSf () const
 
Mat getTSA () const
 
Mat getTSB () const
 
int getTSstep () const
 
double getTStime () const
 
double getTSa () const
 
MatrixDoublegetGaussPts ()
 matrix of integration (Gauss) points for Volume Element More...
 
auto getFTensor0IntegrationWeight ()
 Get integration weights. More...
 
DEPRECATED MoFEMErrorCode getPorblemRowIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 
- Public Member Functions inherited from MoFEM::DataOperator
 DataOperator (const bool symm=true)
 
virtual ~DataOperator ()=default
 
virtual MoFEMErrorCode doWork (int row_side, int col_side, EntityType row_type, EntityType col_type, DataForcesAndSourcesCore::EntData &row_data, DataForcesAndSourcesCore::EntData &col_data)
 Operator for bi-linear form, usually to calculate values on left hand side. More...
 
virtual MoFEMErrorCode opLhs (DataForcesAndSourcesCore &row_data, DataForcesAndSourcesCore &col_data)
 
virtual MoFEMErrorCode doWork (int side, EntityType type, DataForcesAndSourcesCore::EntData &data)
 Operator for linear form, usually to calculate values on right hand side. More...
 
virtual MoFEMErrorCode opRhs (DataForcesAndSourcesCore &data, const bool error_if_no_base=false)
 
bool getSymm () const
 Get if operator uses symmetry of DOFs or not. More...
 
void setSymm ()
 set if operator is executed taking in account symmetry More...
 
void unSetSymm ()
 unset if operator is executed for non symmetric problem More...
 

Public Attributes

UnsaturatedFlowElementcTx
 
moab::Interface & postProcMesh
 
std::vector< EntityHandle > & mapGaussPts
 
- Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
char opType
 
std::string rowFieldName
 
std::string colFieldName
 
FieldSpace sPace
 
- Public Attributes inherited from MoFEM::DataOperator
bool sYmm
 If true assume that matrix is symmetric structure. More...
 
std::array< bool, MBMAXTYPE > doEntities
 If true operator is executed for entity. More...
 
booldoVertices
 \deprectaed If false skip vertices More...
 
booldoEdges
 \deprectaed If false skip edges More...
 
booldoQuads
 \deprectaed More...
 
booldoTris
 \deprectaed More...
 
booldoTets
 \deprectaed More...
 
booldoPrisms
 \deprectaed More...
 

Additional Inherited Members

- Public Types inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
enum  OpType { OPROW = 1 << 0, OPCOL = 1 << 1, OPROWCOL = 1 << 2, OPLAST = 1 << 3 }
 Controls loop over entities on element. More...
 
- Protected Member Functions inherited from MoFEM::VolumeElementForcesAndSourcesCoreBase::UserDataOperator
MoFEMErrorCode setPtrFE (ForcesAndSourcesCore *ptr)
 
- Protected Member Functions inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
ForcesAndSourcesCoregetPtrFE () const
 
ForcesAndSourcesCoregetSidePtrFE () const
 
- Protected Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
ForcesAndSourcesCoreptrFE
 

Detailed Description

Operator used to post-process results for unsaturated infiltration problem. Operator should with element for post-processing results, i.e. PostProcVolumeOnRefinedMesh

Definition at line 956 of file UnsaturatedFlow.hpp.

Constructor & Destructor Documentation

◆ OpPostProcMaterial()

MixTransport::UnsaturatedFlowElement::OpPostProcMaterial::OpPostProcMaterial ( UnsaturatedFlowElement ctx,
moab::Interface &  post_proc_mesh,
std::vector< EntityHandle > &  map_gauss_pts,
const std::string  field_name 
)
Examples
UnsaturatedFlow.hpp.

Definition at line 963 of file UnsaturatedFlow.hpp.

968  field_name, ForcesAndSourcesCore::UserDataOperator::OPROW),
969  cTx(ctx), postProcMesh(post_proc_mesh), mapGaussPts(map_gauss_pts) {}
moab::Interface & postProcMesh
VolumeElementForcesAndSourcesCoreBase::UserDataOperator UserDataOperator
UnsaturatedFlowElement & cTx
std::vector< EntityHandle > & mapGaussPts

Member Function Documentation

◆ doWork()

MoFEMErrorCode MixTransport::UnsaturatedFlowElement::OpPostProcMaterial::doWork ( int  side,
EntityType  type,
DataForcesAndSourcesCore::EntData data 
)
Examples
UnsaturatedFlow.hpp.

Definition at line 971 of file UnsaturatedFlow.hpp.

972  {
974  int nb_dofs = data.getFieldData().size();
975  if (nb_dofs == 0)
977 
978  // Get EntityHandle of the finite element
979  EntityHandle fe_ent = getNumeredEntFiniteElementPtr()->getEnt();
980  // Get material block id
981  int block_id;
982  CHKERR cTx.getMaterial(fe_ent, block_id);
983  // Get material block
984  boost::shared_ptr<GenericMaterial> &block_data = cTx.dMatMap.at(block_id);
985 
986  // Set bloc Id
987  Tag th_id;
988  int def_block_id = -1;
989  CHKERR postProcMesh.tag_get_handle("BLOCK_ID", 1, MB_TYPE_INTEGER, th_id,
990  MB_TAG_CREAT | MB_TAG_SPARSE,
991  &def_block_id);
992  CHKERR postProcMesh.tag_set_data(th_id, &fe_ent, 1, &block_id);
993 
994  // Create mesh tag. Tags are created on post-processing mesh and
995  // visable in post-processor, e.g. Paraview
996  double zero = 0;
997  Tag th_theta;
998  CHKERR postProcMesh.tag_get_handle("THETA", 1, MB_TYPE_DOUBLE, th_theta,
999  MB_TAG_CREAT | MB_TAG_SPARSE, &zero);
1000  Tag th_se;
1001  CHKERR postProcMesh.tag_get_handle("Se", 1, MB_TYPE_DOUBLE, th_se,
1002  MB_TAG_CREAT | MB_TAG_SPARSE, &zero);
1003  // Tag th_ks;
1004  // CHKERR postProcMesh.tag_get_handle(
1005  // "Ks",1,MB_TYPE_DOUBLE,th_ks,
1006  // MB_TAG_CREAT|MB_TAG_SPARSE,&zero
1007  // );
1008  // CHKERR postProcMesh.tag_set_data(th_ks,&fe_ent,1,&block_data->Ks);
1009  Tag th_k;
1010  CHKERR postProcMesh.tag_get_handle("K", 1, MB_TYPE_DOUBLE, th_k,
1011  MB_TAG_CREAT | MB_TAG_SPARSE, &zero);
1012  Tag th_c;
1013  CHKERR postProcMesh.tag_get_handle("C", 1, MB_TYPE_DOUBLE, th_c,
1014  MB_TAG_CREAT | MB_TAG_SPARSE, &zero);
1015 
1016  // Get pressure at integration points
1018  // Coords at integration points
1019  auto t_coords = getFTensor1CoordsAtGaussPts();
1020 
1021  int nb_gauss_pts = data.getN().size1();
1022  for (int gg = 0; gg < nb_gauss_pts; gg++) {
1023  block_data->h = t_h;
1024  block_data->x = t_coords(0);
1025  block_data->y = t_coords(1);
1026  block_data->z = t_coords(2);
1027  // Calculate theta (water content) and save it on mesh tags
1028  CHKERR block_data->calTheta();
1029  double theta = block_data->tHeta;
1030  CHKERR postProcMesh.tag_set_data(th_theta, &mapGaussPts[gg], 1, &theta);
1031  CHKERR block_data->calSe();
1032  // Calculate Se (effective saturation and save it on the mesh tags)
1033  double Se = block_data->Se;
1034  CHKERR postProcMesh.tag_set_data(th_se, &mapGaussPts[gg], 1, &Se);
1035  // Calculate K (hydraulic conductivity) and save it on the mesh tags
1036  CHKERR block_data->calK();
1037  double K = block_data->K;
1038  CHKERR postProcMesh.tag_set_data(th_k, &mapGaussPts[gg], 1, &K);
1039  // Calculate water capacity and save it on the mesh tags
1040  CHKERR block_data->calC();
1041  double C = block_data->C;
1042  CHKERR postProcMesh.tag_set_data(th_c, &mapGaussPts[gg], 1, &C);
1043  ++t_h;
1044  ++t_coords;
1045  }
1046 
1048  }
static FTensor::Tensor0< FTensor::PackPtr< double *, 1 > > getFTensor0FromVec(ublas::vector< T, A > &data)
Get tensor rank 0 (scalar) form data vector.
Definition: Templates.hpp:141
VectorDouble valuesAtGaussPts
values at integration points on element
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:483
virtual MoFEMErrorCode getMaterial(const EntityHandle ent, int &block_id) const
For given element handle get material block Id.
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:514
MaterialsDoubleMap dMatMap
materials database
boost::shared_ptr< const NumeredEntFiniteElement > getNumeredEntFiniteElementPtr() const
Return raw pointer to NumeredEntFiniteElement.
moab::Interface & postProcMesh
#define CHKERR
Inline error check.
Definition: definitions.h:602
UnsaturatedFlowElement & cTx
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:413
auto getFTensor1CoordsAtGaussPts()
Get coordinates at integration points assuming linear geometry.
std::vector< EntityHandle > & mapGaussPts

Member Data Documentation

◆ cTx

UnsaturatedFlowElement& MixTransport::UnsaturatedFlowElement::OpPostProcMaterial::cTx
Examples
UnsaturatedFlow.hpp.

Definition at line 959 of file UnsaturatedFlow.hpp.

◆ mapGaussPts

std::vector<EntityHandle>& MixTransport::UnsaturatedFlowElement::OpPostProcMaterial::mapGaussPts
Examples
UnsaturatedFlow.hpp.

Definition at line 961 of file UnsaturatedFlow.hpp.

◆ postProcMesh

moab::Interface& MixTransport::UnsaturatedFlowElement::OpPostProcMaterial::postProcMesh
Examples
UnsaturatedFlow.hpp.

Definition at line 960 of file UnsaturatedFlow.hpp.


The documentation for this struct was generated from the following file: