v0.9.0
Public Member Functions | Public Attributes | List of all members
MoFEM::BitRefManager Struct Reference

Managing BitRefLevels. More...

#include <src/interfaces/BitRefManager.hpp>

Inheritance diagram for MoFEM::BitRefManager:
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Collaboration diagram for MoFEM::BitRefManager:
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Public Member Functions

MoFEMErrorCode query_interface (const MOFEMuuid &uuid, UnknownInterface **iface) const
 
 BitRefManager (const MoFEM::Core &core)
 
 ~BitRefManager ()
 Destructor. More...
 
- Public Member Functions inherited from MoFEM::UnknownInterface
template<class IFACE >
MoFEMErrorCode registerInterface (const MOFEMuuid &uuid, bool error_if_registration_failed=true)
 Register interface. More...
 
template<class IFACE , bool VERIFY = false>
MoFEMErrorCode getInterface (const MOFEMuuid &uuid, IFACE *&iface) const
 Get interface by uuid and return reference to pointer of interface. More...
 
template<class IFACE >
MoFEMErrorCode getInterface (IFACE *&iface) const
 Get interface refernce to pointer of interface. More...
 
template<class IFACE >
MoFEMErrorCode getInterface (IFACE **const iface) const
 Get interface pointer to pointer of interface. More...
 
template<class IFACE , typename boost::enable_if< boost::is_pointer< IFACE >, int >::type = 0>
IFACE getInterface () const
 Get interface pointer to pointer of interface. More...
 
template<class IFACE , typename boost::enable_if< boost::is_reference< IFACE >, int >::type = 0>
IFACE getInterface () const
 Get reference to interface. More...
 
template<class IFACE >
IFACE * getInterface () const
 Function returning pointer to interface. More...
 
virtual ~UnknownInterface ()=default
 
virtual MoFEMErrorCode getLibVersion (Version &version) const
 Get library version. More...
 
virtual const MoFEMErrorCode getFileVersion (moab::Interface &moab, Version &version) const
 Get database major version. More...
 
virtual MoFEMErrorCode getInterfaceVersion (Version &version) const
 Get database major version. More...
 
template<>
MoFEMErrorCode getInterface (const MOFEMuuid &uuid, UnknownInterface *&iface) const
 

Public Attributes

MoFEM::CorecOre
 
bool dEbug
 

Setting and shifting bits

MoFEMErrorCode setBitRefLevel (const Range &ents, const BitRefLevel bit, const bool only_tets=true, int verb=0) const
 add entities to database and set bit ref levelThis function set bit ref level, add entries to core database and create ref finite elements. Finite elements are create of entities in function argument, whereas all lower dimension entities are added as a field entities More...
 
MoFEMErrorCode setElementsBitRefLevel (const Range &ents, const BitRefLevel bit=BitRefLevel(), int verb=QUIET) const
 add entities to database and set bit ref level More...
 
MoFEMErrorCode setEntitiesBitRefLevel (const Range &ents, const BitRefLevel bit=BitRefLevel(), int verb=QUIET) const
 add entities to database and set bit ref level More...
 
MoFEMErrorCode setFieldEntitiesBitRefLevel (const std::string field_name, const BitRefLevel bit=BitRefLevel(), int verb=QUIET) const
 Set the bit ref level to entities in the field meshset. More...
 
MoFEMErrorCode setBitRefLevelByDim (const EntityHandle meshset, const int dim, const BitRefLevel bit, int verb=QUIET) const
 Set the Bit Ref Level By Dim object. More...
 
MoFEMErrorCode setBitRefLevelByType (const EntityHandle meshset, const EntityType type, const BitRefLevel bit, int verb=QUIET) const
 Set the Bit Ref Level By Type object. More...
 
MoFEMErrorCode setBitLevelToMeshset (const EntityHandle meshset, const BitRefLevel bit, int verb=0) const
 
MoFEMErrorCode addToDatabaseBitRefLevelByType (const EntityType type, const BitRefLevel bit, const BitRefLevel mask=BitRefLevel().set(), int verb=QUIET) const
 Add entities which exist in MoAB database, and have set appropiate BitRef level tag, to multi-indices in MoFEM. More...
 
MoFEMErrorCode addToDatabaseBitRefLevelByDim (const int dim, const BitRefLevel bit, const BitRefLevel mask=BitRefLevel().set(), int verb=QUIET) const
 Add entities which exist in MoAB database, and have set appropiate BitRef level tag, to multi-indices in MoFEM. More...
 
MoFEMErrorCode addBitRefLevel (const Range &ents, const BitRefLevel bit, int verb=QUIET) const
 add bit ref level to ref entity More...
 
MoFEMErrorCode addBitRefLevelByDim (const EntityHandle meshset, const int dim, const BitRefLevel bit, int verb=QUIET) const
 add bit ref level by dimension More...
 
MoFEMErrorCode setNthBitRefLevel (const Range &ents, const int n, const bool b, int verb=0) const
 Set nth bit ref level. More...
 
MoFEMErrorCode setNthBitRefLevel (const int n, const bool b, int verb=0) const
 Set nth bit ref level. More...
 
MoFEMErrorCode shiftLeftBitRef (const int shift, const BitRefLevel mask=BitRefLevel().set(), int verb=-1) const
 left shift bit ref levelthis results of deletion of entities on far left side More...
 
MoFEMErrorCode shiftRightBitRef (const int shift, const BitRefLevel mask=BitRefLevel().set(), int verb=-1) const
 right shift bit ref level More...
 

Entity handlers by bit ref level

MoFEMErrorCode filterEntitiesByRefLevel (const BitRefLevel bit, const BitRefLevel mask, Range &ents, int verb=QUIET) const
 filter entities by bit ref level More...
 
MoFEMErrorCode getEntitiesByTypeAndRefLevel (const BitRefLevel bit, const BitRefLevel mask, const EntityType type, const EntityHandle meshset, int verb=0) const
 add all ents from ref level given by bit to meshset More...
 
MoFEMErrorCode getEntitiesByTypeAndRefLevel (const BitRefLevel bit, const BitRefLevel mask, const EntityType type, Range &ents, int verb=0) const
 add all ents from ref level given by bit to meshset More...
 
MoFEMErrorCode getEntitiesByDimAndRefLevel (const BitRefLevel bit, const BitRefLevel mask, const int dim, const EntityHandle meshset, int verb=0) const
 add all ents from ref level given by bit to meshset More...
 
MoFEMErrorCode getEntitiesByDimAndRefLevel (const BitRefLevel bit, const BitRefLevel mask, const int dim, Range &ents, int verb=0) const
 add all ents from ref level given by bit to meshset More...
 
MoFEMErrorCode getEntitiesByRefLevel (const BitRefLevel bit, const BitRefLevel mask, const EntityHandle meshset, const int verb=QUIET) const
 add all ents from ref level given by bit to meshset More...
 
MoFEMErrorCode getEntitiesByRefLevel (const BitRefLevel bit, const BitRefLevel mask, Range &ents, const int verb=QUIET) const
 add all ents from ref level given by bit to meshset More...
 
MoFEMErrorCode getEntitiesByParentType (const BitRefLevel bit, const BitRefLevel mask, const EntityType type, Range &ents, const int verb=QUIET) const
 get entities by bit ref level and type of parent More...
 
MoFEMErrorCode getAllEntitiesNotInDatabase (Range &ents) const
 Get all entities not in database. More...
 
MoFEMErrorCode filterEntitiesNotInDatabase (Range &ents) const
 Get entities not in database. More...
 

Get adjacencies bit ref level

virtual MoFEMErrorCode getAdjacenciesEquality (const EntityHandle from_entity, const int to_dimension, Range &adj_entities) const
 Get the adjacencies associated with a entity to entities of a specified dimension.bit ref level of adjacent entities is equal to bit ref level of adjacent entities. More...
 
virtual MoFEMErrorCode getAdjacenciesAny (const EntityHandle from_entity, const int to_dimension, Range &adj_entities) const
 Get the adjacencies associated with a entity to entities of a specified dimension.bit ref level of adjacent entities is any of bit ref level of adjacent entities. More...
 
virtual MoFEMErrorCode getAdjacencies (const Problem *problem_ptr, const EntityHandle *from_entities, const int num_entities, const int to_dimension, Range &adj_entities, const int operation_type=moab::Interface::INTERSECT, const int verb=0) const
 Get the adjacencies associated with a entity to entities of a specified dimension.bit ref level of adjacent entities is equal to bit ref level of adjacent entities. More...
 
virtual MoFEMErrorCode getAdjacencies (const BitRefLevel bit, const EntityHandle *from_entities, const int num_entities, const int to_dimension, Range &adj_entities, const int operation_type=moab::Interface::INTERSECT, const int verb=0) const
 Get the adjacencies associated with a entity to entities of a specified dimension.bit ref level of adjacent entities is equal to bit ref level of adjacent entities. More...
 

Update meshsets and ranges by children

MoFEMErrorCode updateMeshsetByEntitiesChildren (const EntityHandle parent, const BitRefLevel &parent_bit, const BitRefLevel &parent_mask, const BitRefLevel &child_bit, const BitRefLevel &child_mask, const EntityHandle child, EntityType child_type, const bool recursive=false, int verb=0)
 Get child entities form meshset containing parent entitiesSearch for refined entities of given type whose parent are entities in the parent meshset. It can be used for example to transfer information about boundary conditions to refined mesh or split mesh by interface elements. It is used by function refine_MESHSET, to update MESHSET finite elements. More...
 
MoFEMErrorCode updateMeshsetByEntitiesChildren (const EntityHandle parent, const BitRefLevel &child_bit, const EntityHandle child, EntityType child_type, const bool recursive=false, int verb=0)
 Get child entities form meshset containing parent entities. More...
 
MoFEMErrorCode updateFieldMeshsetByEntitiesChildren (const BitRefLevel &child_bit, int verb=0)
 update fields meshesets by child entities More...
 
MoFEMErrorCode updateFieldMeshsetByEntitiesChildren (const std::string name, const BitRefLevel &child_bit, int verb=0)
 update field meshset by child entities More...
 
MoFEMErrorCode updateFiniteElementMeshsetByEntitiesChildren (const std::string name, const BitRefLevel &child_bit, const EntityType fe_ent_type, int verb=0)
 update finite element meshset by child entities More...
 
MoFEMErrorCode updateRange (const Range &parent, Range &child)
 Update range by prents. More...
 

Writting files

MoFEMErrorCode writeBitLevelByType (const BitRefLevel bit, const BitRefLevel mask, const EntityType type, const char *file_name, const char *file_type, const char *options, const bool check_for_empty=true) const
 Write bit ref level to file. More...
 
MoFEMErrorCode writeEntitiesNotInDatabase (const char *file_name, const char *file_type, const char *options, const bool check_for_empty=true) const
 Write ents not in database. More...
 
MoFEMErrorCode writeEntitiesAllBitLevelsByType (const BitRefLevel mask, const EntityType type, const char *file_name, const char *file_type, const char *options)
 Write all entities by bit levels and type. More...
 

Additional Inherited Members

- Protected Member Functions inherited from MoFEM::UnknownInterface
boost::typeindex::type_index getClassIdx (const MOFEMuuid &uid) const
 Get type name for interface Id. More...
 
MOFEMuuid getUId (const boost::typeindex::type_index &class_idx) const
 Get interface Id for class name. More...
 

Detailed Description

Managing BitRefLevels.

Examples
bernstein_bezier_generate_base.cpp, build_problems.cpp, continuity_check_on_skeleton_3d.cpp, dm_build_partitioned_mesh.cpp, dm_create_subdm.cpp, dm_partitioned_no_field.cpp, elasticity.cpp, elasticity_mixed_formulation.cpp, ep.cpp, field_axpy_atom_test.cpp, field_to_vertices.cpp, forces_and_sources_testing_edge_element.cpp, forces_and_sources_testing_flat_prism_element.cpp, forces_and_sources_testing_users_base.cpp, hcurl_check_approx_in_2d.cpp, hcurl_curl_operator.cpp, hcurl_divergence_operator_2d.cpp, mesh_cut.cpp, mesh_insert_interface_atom.cpp, mesh_smoothing.cpp, minimal_surface_area.cpp, prism_elements_from_surface.cpp, prism_polynomial_approximation.cpp, quad_polynomial_approximation.cpp, Remodeling.cpp, remove_entities_from_problem.cpp, split_sideset.cpp, and unsaturated_transport.cpp.

Definition at line 34 of file BitRefManager.hpp.

Constructor & Destructor Documentation

◆ BitRefManager()

MoFEM::BitRefManager::BitRefManager ( const MoFEM::Core core)

Definition at line 34 of file BitRefManager.cpp.

35  : cOre(const_cast<MoFEM::Core &>(core)), dEbug(false) {}

◆ ~BitRefManager()

MoFEM::BitRefManager::~BitRefManager ( )

Destructor.

Definition at line 36 of file BitRefManager.cpp.

36 {}

Member Function Documentation

◆ filterEntitiesByRefLevel()

MoFEMErrorCode MoFEM::BitRefManager::filterEntitiesByRefLevel ( const BitRefLevel  bit,
const BitRefLevel  mask,
Range &  ents,
int  verb = QUIET 
) const

filter entities by bit ref level

Parameters
bit
mask
ents
QUIET
Returns
MoFEMErrorCode

Definition at line 609 of file BitRefManager.cpp.

612  {
613  MoFEM::Interface &m_field = cOre;
614  moab::Interface &moab(m_field.get_moab());
616 
617  std::vector<EntityHandle> ents_vec;
618  ents_vec.reserve(ents.size());
619 
620  std::vector<BitRefLevel *> tags_bits_ptr_vec(ents.size());
621 
622  Range swap_ents;
623  auto hint = swap_ents.begin();
624 
625  for (Range::pair_iterator p_eit = ents.pair_begin(); p_eit != ents.pair_end();
626  ++p_eit) {
627 
628  EntityHandle f = p_eit->first;
629  const EntityHandle s = p_eit->second;
630 
631  // get bits on entities
632  rval = moab.tag_get_by_ptr(cOre.get_th_RefBitLevel(), Range(f, s),
633  (const void **)(&*tags_bits_ptr_vec.begin()));
634 
635  if (rval == MB_SUCCESS) {
636 
637  auto bit_it = tags_bits_ptr_vec.begin();
638 
639  auto check = [&bit, &mask](const auto &entity_bit) -> bool {
640  return
641 
642  (entity_bit & bit).any() &&
643 
644  ((entity_bit & mask) == entity_bit);
645  };
646 
647  while (f != s + 1) {
648 
649  while (f != s + 1 && !check(**bit_it)) {
650  ++bit_it;
651  ++f;
652  }
653 
654  if (f != s + 1) {
655 
656  const EntityHandle start = f;
657 
658  while (f != (s + 1) && check(**bit_it)) {
659  ++bit_it;
660  ++f;
661  };
662 
663  hint = swap_ents.insert(hint, start, f - 1);
664  }
665 
666  }
667  }
668  }
669 
670  ents.swap(swap_ents);
671 
673 }
Tag get_th_RefBitLevel() const
Definition: Core.hpp:151
virtual moab::Interface & get_moab()=0
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:501
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:508
static MoFEMErrorCodeGeneric< moab::ErrorCode > rval
Definition: Exceptions.hpp:84

◆ filterEntitiesNotInDatabase()

MoFEMErrorCode MoFEM::BitRefManager::filterEntitiesNotInDatabase ( Range &  ents) const

Get entities not in database.

Parameters
ents
Returns
MoFEMErrorCode

Definition at line 774 of file BitRefManager.cpp.

774  {
775  MoFEM::Interface &m_field = cOre;
776  const RefEntity_multiIndex *ref_ents_ptr;
778  ierr = m_field.get_ref_ents(&ref_ents_ptr);
779  CHKERRG(ierr);
780  Range::iterator eit = ents.begin();
781  for (; eit != ents.end();) {
782  RefEntity_multiIndex::index<Ent_mi_tag>::type::iterator rit;
783  rit = ref_ents_ptr->get<Ent_mi_tag>().find(*eit);
784  if (rit != ref_ents_ptr->get<Ent_mi_tag>().end()) {
785  eit = ents.erase(eit);
786  } else {
787  eit++;
788  }
789  }
791 }
virtual MoFEMErrorCode get_ref_ents(const RefEntity_multiIndex **refined_ents_ptr) const =0
Get ref entities multi-index from database.
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:501
#define CHKERRG(n)
Check error code of MoFEM/MOAB/PETSc function.
Definition: definitions.h:544
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:508
multi_index_container< boost::shared_ptr< RefEntity >, indexed_by< ordered_unique< tag< Ent_mi_tag >, member< RefEntity::BasicEntity, EntityHandle, &RefEntity::ent > >, ordered_non_unique< tag< Ent_Ent_mi_tag >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getParentEnt > >, ordered_non_unique< tag< EntType_mi_tag >, const_mem_fun< RefEntity::BasicEntity, EntityType, &RefEntity::getEntType > >, ordered_non_unique< tag< ParentEntType_mi_tag >, const_mem_fun< RefEntity, EntityType, &RefEntity::getParentEntType > >, ordered_non_unique< tag< Composite_EntType_and_ParentEntType_mi_tag >, composite_key< RefEntity, const_mem_fun< RefEntity::BasicEntity, EntityType, &RefEntity::getEntType >, const_mem_fun< RefEntity, EntityType, &RefEntity::getParentEntType > > >, ordered_non_unique< tag< Composite_ParentEnt_And_EntType_mi_tag >, composite_key< RefEntity, const_mem_fun< RefEntity::BasicEntity, EntityType, &RefEntity::getEntType >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getParentEnt > > > > > RefEntity_multiIndex

◆ getAllEntitiesNotInDatabase()

MoFEMErrorCode MoFEM::BitRefManager::getAllEntitiesNotInDatabase ( Range &  ents) const

Get all entities not in database.

Parameters
ents
Returns
MoFEMErrorCode

Definition at line 762 of file BitRefManager.cpp.

762  {
763  MoFEM::Interface &m_field = cOre;
764  moab::Interface &moab = m_field.get_moab();
766  rval = moab.get_entities_by_handle(0, ents, false);
767  CHKERRG(rval);
768  ents = subtract(ents, ents.subset_by_type(MBENTITYSET));
770  CHKERRG(ierr);
772 }
virtual moab::Interface & get_moab()=0
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:501
#define CHKERRG(n)
Check error code of MoFEM/MOAB/PETSc function.
Definition: definitions.h:544
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:508
static MoFEMErrorCodeGeneric< moab::ErrorCode > rval
Definition: Exceptions.hpp:84
MoFEMErrorCode filterEntitiesNotInDatabase(Range &ents) const
Get entities not in database.

◆ getEntitiesByParentType()

MoFEMErrorCode MoFEM::BitRefManager::getEntitiesByParentType ( const BitRefLevel  bit,
const BitRefLevel  mask,
const EntityType  type,
Range &  ents,
const int  verb = QUIET 
) const

get entities by bit ref level and type of parent

Note
Entities have to be added to MoFEM database
Parameters
BitRefLevelbitLevel
BitRefLevelmask
typeof parent
entsreturned ents
Returns
error code

Definition at line 737 of file BitRefManager.cpp.

741  {
742  MoFEM::Interface &m_field = cOre;
743  const RefEntity_multiIndex *ref_ents_ptr;
745  CHKERR m_field.get_ref_ents(&ref_ents_ptr);
746  auto &ref_ents = ref_ents_ptr->get<ParentEntType_mi_tag>();
747  auto it = ref_ents.lower_bound(type);
748  auto hi_it = ref_ents.upper_bound(type);
749  std::vector<EntityHandle> ents_vec;
750  ents_vec.reserve(std::distance(it, hi_it));
751  for (; it != hi_it; it++) {
752  const BitRefLevel &ent_bit = it->get()->getBitRefLevel();
753  if ((ent_bit & mask) == ent_bit && (ent_bit & bit).any())
754  ents_vec.emplace_back(it->get()->getRefEnt());
755  }
756  ents.insert_list(ents_vec.begin(), ents_vec.end());
757  if (verb > NOISY)
758  cerr << "getEntitiesByParentType: " << ents << endl;
760 }
virtual MoFEMErrorCode get_ref_ents(const RefEntity_multiIndex **refined_ents_ptr) const =0
Get ref entities multi-index from database.
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:477
#define CHKERR
Inline error check.
Definition: definitions.h:596
std::bitset< BITREFLEVEL_SIZE > BitRefLevel
Bit structure attached to each entity identifying to what mesh entity is attached.
Definition: Types.hpp:51
multi_index_container< boost::shared_ptr< RefEntity >, indexed_by< ordered_unique< tag< Ent_mi_tag >, member< RefEntity::BasicEntity, EntityHandle, &RefEntity::ent > >, ordered_non_unique< tag< Ent_Ent_mi_tag >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getParentEnt > >, ordered_non_unique< tag< EntType_mi_tag >, const_mem_fun< RefEntity::BasicEntity, EntityType, &RefEntity::getEntType > >, ordered_non_unique< tag< ParentEntType_mi_tag >, const_mem_fun< RefEntity, EntityType, &RefEntity::getParentEntType > >, ordered_non_unique< tag< Composite_EntType_and_ParentEntType_mi_tag >, composite_key< RefEntity, const_mem_fun< RefEntity::BasicEntity, EntityType, &RefEntity::getEntType >, const_mem_fun< RefEntity, EntityType, &RefEntity::getParentEntType > > >, ordered_non_unique< tag< Composite_ParentEnt_And_EntType_mi_tag >, composite_key< RefEntity, const_mem_fun< RefEntity::BasicEntity, EntityType, &RefEntity::getEntType >, const_mem_fun< RefEntity, EntityHandle, &RefEntity::getParentEnt > > > > > RefEntity_multiIndex
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:407

◆ query_interface()

MoFEMErrorCode MoFEM::BitRefManager::query_interface ( const MOFEMuuid uuid,
UnknownInterface **  iface 
) const
virtual

Implements MoFEM::UnknownInterface.

Definition at line 22 of file BitRefManager.cpp.

23  {
25  *iface = NULL;
26  if (uuid == IDD_MOFEMBitRefManager) {
27  *iface = const_cast<BitRefManager *>(this);
29  }
30  SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY, "unknown interface");
32 }
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:501
static const MOFEMuuid IDD_MOFEMBitRefManager
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:508

◆ writeBitLevelByType()

MoFEMErrorCode MoFEM::BitRefManager::writeBitLevelByType ( const BitRefLevel  bit,
const BitRefLevel  mask,
const EntityType  type,
const char *  file_name,
const char *  file_type,
const char *  options,
const bool  check_for_empty = true 
) const

Write bit ref level to file.

Parameters
bitbit ref level
maskmask of bit ref level
typetype of entity
file_namefile name (see moab documentation)
file_typefile type (see moab documentation)
optionsfile options (see moab documentation)
Returns
error code

Definition at line 548 of file BitRefManager.cpp.

551  {
552  MoFEM::Interface &m_field = cOre;
553  moab::Interface &moab(m_field.get_moab());
555  Range ents;
556  CHKERR getEntitiesByTypeAndRefLevel(bit, mask, type, ents);
557  if (check_for_empty && ents.empty())
559  EntityHandle meshset;
560  CHKERR moab.create_meshset(MESHSET_SET, meshset);
561  CHKERR moab.add_entities(meshset, ents);
562  CHKERR moab.write_file(file_name, file_type, options, &meshset, 1);
563  CHKERR moab.delete_entities(&meshset, 1);
565 }
virtual moab::Interface & get_moab()=0
MoFEMErrorCode getEntitiesByTypeAndRefLevel(const BitRefLevel bit, const BitRefLevel mask, const EntityType type, const EntityHandle meshset, int verb=0) const
add all ents from ref level given by bit to meshset
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:477
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:508
#define CHKERR
Inline error check.
Definition: definitions.h:596
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:407

◆ writeEntitiesAllBitLevelsByType()

MoFEMErrorCode MoFEM::BitRefManager::writeEntitiesAllBitLevelsByType ( const BitRefLevel  mask,
const EntityType  type,
const char *  file_name,
const char *  file_type,
const char *  options 
)

Write all entities by bit levels and type.

Parameters
mask
type
file_name
file_type
options
Returns
MoFEMErrorCode

Definition at line 585 of file BitRefManager.cpp.

587  {
589  for (int ll = 0; ll != BITREFLEVEL_SIZE; ++ll) {
590  std::string name = boost::lexical_cast<std::string>(ll) + "_" + file_name;
591  CHKERR writeBitLevelByType(BitRefLevel().set(ll), mask, type, name.c_str(),
592  file_type, options, true);
593  }
595 }
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:477
#define BITREFLEVEL_SIZE
max number of refinements
Definition: definitions.h:279
#define CHKERR
Inline error check.
Definition: definitions.h:596
MoFEMErrorCode writeBitLevelByType(const BitRefLevel bit, const BitRefLevel mask, const EntityType type, const char *file_name, const char *file_type, const char *options, const bool check_for_empty=true) const
Write bit ref level to file.
std::bitset< BITREFLEVEL_SIZE > BitRefLevel
Bit structure attached to each entity identifying to what mesh entity is attached.
Definition: Types.hpp:51
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:407

◆ writeEntitiesNotInDatabase()

MoFEMErrorCode MoFEM::BitRefManager::writeEntitiesNotInDatabase ( const char *  file_name,
const char *  file_type,
const char *  options,
const bool  check_for_empty = true 
) const

Write ents not in database.

Parameters
file_name
file_typefor example "VTK"
options
check_for_empty
Returns
MoFEMErrorCode

Definition at line 567 of file BitRefManager.cpp.

569  {
570  MoFEM::Interface &m_field = cOre;
571  moab::Interface &moab(m_field.get_moab());
573  EntityHandle meshset;
574  Range ents;
576  if (check_for_empty && ents.empty())
578  CHKERR moab.create_meshset(MESHSET_SET, meshset);
579  CHKERR moab.add_entities(meshset, ents);
580  CHKERR moab.write_file(file_name, file_type, options, &meshset, 1);
581  CHKERR moab.delete_entities(&meshset, 1);
583 }
virtual moab::Interface & get_moab()=0
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:477
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:508
#define CHKERR
Inline error check.
Definition: definitions.h:596
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:407
MoFEMErrorCode getAllEntitiesNotInDatabase(Range &ents) const
Get all entities not in database.

Member Data Documentation

◆ cOre

MoFEM::Core& MoFEM::BitRefManager::cOre

Definition at line 39 of file BitRefManager.hpp.

◆ dEbug

bool MoFEM::BitRefManager::dEbug

Definition at line 40 of file BitRefManager.hpp.


The documentation for this struct was generated from the following files: