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Public Member Functions | Public Attributes | List of all members
MoFEM::BitRefManager Struct Reference

Managing BitRefLevels. More...

#include <src/interfaces/BitRefManager.hpp>

Inheritance diagram for MoFEM::BitRefManager:
[legend]
Collaboration diagram for MoFEM::BitRefManager:
[legend]

Public Member Functions

MoFEMErrorCode query_interface (boost::typeindex::type_index type_index, UnknownInterface **iface) const
 
 BitRefManager (const MoFEM::Core &core)
 
virtual ~BitRefManager ()=default
 Destructor. More...
 
- Public Member Functions inherited from MoFEM::UnknownInterface
virtual MoFEMErrorCode query_interface (boost::typeindex::type_index type_index, UnknownInterface **iface) const =0
 
template<class IFACE >
MoFEMErrorCode registerInterface (bool error_if_registration_failed=true)
 Register interface. More...
 
template<class IFACE >
MoFEMErrorCode getInterface (IFACE *&iface) const
 Get interface refernce to pointer of interface. More...
 
template<class IFACE >
MoFEMErrorCode getInterface (IFACE **const iface) const
 Get interface pointer to pointer of interface. More...
 
template<class IFACE , typename boost::enable_if< boost::is_pointer< IFACE >, int >::type = 0>
IFACE getInterface () const
 Get interface pointer to pointer of interface. More...
 
template<class IFACE , typename boost::enable_if< boost::is_reference< IFACE >, int >::type = 0>
IFACE getInterface () const
 Get reference to interface. More...
 
template<class IFACE >
IFACE * getInterface () const
 Function returning pointer to interface. More...
 
virtual ~UnknownInterface ()=default
 

Public Attributes

MoFEM::CorecOre
 
bool dEbug
 

Setting and shifting bits

MoFEMErrorCode setBitRefLevel (const Range &ents, const BitRefLevel bit, const bool only_tets=true, int verb=0, Range *adj_ents_ptr=nullptr) const
 add entities to database and set bit ref level More...
 
MoFEMErrorCode setElementsBitRefLevel (const Range &ents, const BitRefLevel bit=BitRefLevel(), int verb=QUIET) const
 add entities to database and set bit ref level More...
 
MoFEMErrorCode setEntitiesBitRefLevel (const Range &ents, const BitRefLevel bit=BitRefLevel(), int verb=QUIET) const
 add entities to database and set bit ref level More...
 
MoFEMErrorCode setFieldEntitiesBitRefLevel (const std::string field_name, const BitRefLevel bit=BitRefLevel(), int verb=QUIET) const
 Set the bit ref level to entities in the field meshset. More...
 
MoFEMErrorCode setBitRefLevelByDim (const EntityHandle meshset, const int dim, const BitRefLevel bit, int verb=QUIET) const
 Set the Bit Ref Level By Dim object. More...
 
MoFEMErrorCode setBitRefLevelByType (const EntityHandle meshset, const EntityType type, const BitRefLevel bit, int verb=QUIET) const
 Set the Bit Ref Level By Type object. More...
 
MoFEMErrorCode setBitLevelToMeshset (const EntityHandle meshset, const BitRefLevel bit, int verb=0) const
 
MoFEMErrorCode addToDatabaseBitRefLevelByType (const EntityType type, const BitRefLevel bit, const BitRefLevel mask=BitRefLevel().set(), int verb=QUIET) const
 Add entities which exist in MoAB database, and have set appropiate BitRef level tag, to multi-indices in MoFEM. More...
 
MoFEMErrorCode addToDatabaseBitRefLevelByDim (const int dim, const BitRefLevel bit, const BitRefLevel mask=BitRefLevel().set(), int verb=QUIET) const
 Add entities which exist in MoAB database, and have set appropiate BitRef level tag, to multi-indices in MoFEM. More...
 
MoFEMErrorCode lambdaBitRefLevel (boost::function< void(EntityHandle ent, BitRefLevel &bit)> fun) const
 Process bit ref level by lambda function. More...
 
MoFEMErrorCode lambdaBitRefLevel (const Range &ents, boost::function< void(EntityHandle ent, BitRefLevel &bit)> fun) const
 Process bit ref level by lambda function. More...
 
MoFEMErrorCode addBitRefLevel (const Range &ents, const BitRefLevel &bit, int verb=QUIET) const
 add bit ref level to ref entity More...
 
MoFEMErrorCode addBitRefLevelByDim (const EntityHandle meshset, const int dim, const BitRefLevel bit, int verb=QUIET) const
 add bit ref level by dimension More...
 
MoFEMErrorCode setNthBitRefLevel (const Range &ents, const int n, const bool b, int verb=QUIET) const
 Set nth bit ref level. More...
 
MoFEMErrorCode setNthBitRefLevel (const int n, const bool b, int verb=QUIET) const
 Set nth bit ref level to all entities in database. More...
 
MoFEMErrorCode shiftLeftBitRef (const int shift, const BitRefLevel mask=BitRefLevel().set(), int verb=DEFAULT_VERBOSITY) const
 left shift bit ref levelthis results of deletion of entities on far left side More...
 
MoFEMErrorCode shiftRightBitRef (const int shift, const BitRefLevel mask=BitRefLevel().set(), int verb=DEFAULT_VERBOSITY, MoFEMTypes mf=MF_ZERO) const
 right shift bit ref level More...
 

Entity handlers by bit ref level

MoFEMErrorCode filterEntitiesByRefLevel (const BitRefLevel bit, const BitRefLevel mask, Range &ents, int verb=QUIET) const
 filter entities by bit ref level More...
 
MoFEMErrorCode getEntitiesByTypeAndRefLevel (const BitRefLevel bit, const BitRefLevel mask, const EntityType type, const EntityHandle meshset, int verb=0) const
 add all ents from ref level given by bit to meshset More...
 
MoFEMErrorCode getEntitiesByTypeAndRefLevel (const BitRefLevel bit, const BitRefLevel mask, const EntityType type, Range &ents, int verb=0) const
 add all ents from ref level given by bit to meshset More...
 
MoFEMErrorCode getEntitiesByDimAndRefLevel (const BitRefLevel bit, const BitRefLevel mask, const int dim, const EntityHandle meshset, int verb=0) const
 add all ents from ref level given by bit to meshset More...
 
MoFEMErrorCode getEntitiesByDimAndRefLevel (const BitRefLevel bit, const BitRefLevel mask, const int dim, Range &ents, int verb=0) const
 add all ents from ref level given by bit to meshset More...
 
MoFEMErrorCode getEntitiesByRefLevel (const BitRefLevel bit, const BitRefLevel mask, const EntityHandle meshset, const int verb=QUIET) const
 add all ents from ref level given by bit to meshset More...
 
MoFEMErrorCode getEntitiesByRefLevel (const BitRefLevel bit, const BitRefLevel mask, Range &ents, const int verb=QUIET) const
 add all ents from ref level given by bit to meshset More...
 
MoFEMErrorCode getEntitiesByParentType (const BitRefLevel bit, const BitRefLevel mask, const EntityType type, Range &ents, const int verb=QUIET) const
 get entities by bit ref level and type of parent More...
 
MoFEMErrorCode getAllEntitiesNotInDatabase (Range &ents) const
 Get all entities not in database. More...
 
MoFEMErrorCode filterEntitiesNotInDatabase (Range &ents) const
 Get entities not in database. More...
 

Get adjacencies bit ref level

virtual MoFEMErrorCode getAdjacenciesEquality (const EntityHandle from_entity, const int to_dimension, Range &adj_entities) const
 Get the adjacencies associated with a entity to entities of a specified dimension. More...
 
virtual MoFEMErrorCode getAdjacenciesAny (const EntityHandle from_entity, const int to_dimension, Range &adj_entities) const
 Get the adjacencies associated with a entity to entities of a specified dimension. More...
 
virtual MoFEMErrorCode getAdjacencies (const Problem *problem_ptr, const EntityHandle *from_entities, const int num_entities, const int to_dimension, Range &adj_entities, const int operation_type=moab::Interface::INTERSECT, const int verb=0) const
 Get the adjacencies associated with a entity to entities of a specified dimension. More...
 
virtual MoFEMErrorCode getAdjacencies (const BitRefLevel bit, const EntityHandle *from_entities, const int num_entities, const int to_dimension, Range &adj_entities, const int operation_type=moab::Interface::INTERSECT, const int verb=0) const
 Get the adjacencies associated with a entity to entities of a specified dimension. More...
 

Update meshsets and ranges by children

MoFEMErrorCode updateMeshsetByEntitiesChildren (const EntityHandle parent, const BitRefLevel &parent_bit, const BitRefLevel &parent_mask, const BitRefLevel &child_bit, const BitRefLevel &child_mask, const EntityHandle child, EntityType child_type, const bool recursive=false, int verb=0)
 Get child entities form meshset containing parent entities. More...
 
MoFEMErrorCode updateMeshsetByEntitiesChildren (const EntityHandle parent, const BitRefLevel &child_bit, const EntityHandle child, EntityType child_type, const bool recursive=false, int verb=0)
 Get child entities form meshset containing parent entities. More...
 
MoFEMErrorCode updateFieldMeshsetByEntitiesChildren (const BitRefLevel &child_bit, int verb=0)
 update fields meshesets by child entities More...
 
MoFEMErrorCode updateFieldMeshsetByEntitiesChildren (const std::string name, const BitRefLevel &child_bit, int verb=0)
 update field meshset by child entities More...
 
MoFEMErrorCode updateFiniteElementMeshsetByEntitiesChildren (const std::string name, const BitRefLevel &child_bit, const EntityType fe_ent_type, int verb=0)
 update finite element meshset by child entities More...
 
MoFEMErrorCode updateRangeByChildren (const Range &parent, Range &child, MoFEMTypes bh=MF_ZERO)
 Update range by childrens. More...
 
MoFEMErrorCode updateRangeByParent (const Range &child_ents, Range &parent_ents, MoFEMTypes bh=MF_ZERO)
 Update range by parents. More...
 
DEPRECATED MoFEMErrorCode updateRange (const Range &parent, Range &child, MoFEMTypes bh=MF_ZERO)
 

Writing files

MoFEMErrorCode writeBitLevel (const BitRefLevel bit, const BitRefLevel mask, const char *file_name, const char *file_type, const char *options, const bool check_for_empty=true) const
 Write bit ref level to file. More...
 
MoFEMErrorCode writeBitLevelByDim (const BitRefLevel bit, const BitRefLevel mask, const int dim, const char *file_name, const char *file_type, const char *options, const bool check_for_empty=true) const
 Write bit ref level to file. More...
 
MoFEMErrorCode writeBitLevelByType (const BitRefLevel bit, const BitRefLevel mask, const EntityType type, const char *file_name, const char *file_type, const char *options, const bool check_for_empty=true) const
 Write bit ref level to file. More...
 
MoFEMErrorCode writeEntitiesNotInDatabase (const char *file_name, const char *file_type, const char *options, const bool check_for_empty=true) const
 Write ents not in database. More...
 
MoFEMErrorCode writeEntitiesAllBitLevelsByType (const BitRefLevel mask, const EntityType type, const char *file_name, const char *file_type, const char *options)
 Write all entities by bit levels and type. More...
 

Get tag handles to data on the mesh

Tag get_th_RefParentHandle () const
 
Tag get_th_RefBitLevel () const
 
static MoFEMErrorCode fixTagSize (moab::Interface &moab, bool *changed=nullptr)
 Fix tag size when BITREFLEVEL_SIZE of core library is different than file BITREFLEVEL_SIZE. More...
 

Additional Inherited Members

- Static Public Member Functions inherited from MoFEM::UnknownInterface
static MoFEMErrorCode getLibVersion (Version &version)
 Get library version. More...
 
static MoFEMErrorCode getFileVersion (moab::Interface &moab, Version &version)
 Get database major version. More...
 
static MoFEMErrorCode setFileVersion (moab::Interface &moab, Version version=Version(MoFEM_VERSION_MAJOR, MoFEM_VERSION_MINOR, MoFEM_VERSION_BUILD))
 Get database major version. More...
 
static MoFEMErrorCode getInterfaceVersion (Version &version)
 Get database major version. More...
 

Detailed Description

Managing BitRefLevels.

Examples
Remodeling.cpp, bernstein_bezier_generate_base.cpp, build_large_problem.cpp, build_problems.cpp, child_and_parent.cpp, continuity_check_on_contact_prism_side_ele.cpp, continuity_check_on_skeleton_3d.cpp, dm_build_partitioned_mesh.cpp, dm_create_subdm.cpp, dm_partitioned_no_field.cpp, elasticity.cpp, elasticity_mixed_formulation.cpp, ep.cpp, field_blas.cpp, field_to_vertices.cpp, forces_and_sources_testing_edge_element.cpp, forces_and_sources_testing_flat_prism_element.cpp, forces_and_sources_testing_users_base.cpp, free_surface.cpp, hanging_node_approx.cpp, hcurl_divergence_operator_2d.cpp, level_set.cpp, mesh_cut.cpp, mesh_insert_interface_atom.cpp, mesh_smoothing.cpp, minimal_surface_area.cpp, navier_stokes.cpp, node_merge.cpp, nonlinear_dynamics.cpp, plot_base.cpp, prism_elements_from_surface.cpp, prism_polynomial_approximation.cpp, quad_polynomial_approximation.cpp, remove_entities_from_problem.cpp, remove_entities_from_problem_not_partitioned.cpp, simple_contact.cpp, simple_contact_thermal.cpp, split_sideset.cpp, test_jacobian_of_simple_contact_element.cpp, and unsaturated_transport.cpp.

Definition at line 21 of file BitRefManager.hpp.

Constructor & Destructor Documentation

◆ BitRefManager()

MoFEM::BitRefManager::BitRefManager ( const MoFEM::Core core)

Definition at line 16 of file BitRefManager.cpp.

17 : cOre(const_cast<MoFEM::Core &>(core)), dEbug(false) {
18
19 if (!LogManager::checkIfChannelExist("BitRefSelf")) {
20 auto core_log = logging::core::get();
21 core_log->add_sink(
23 LogManager::setLog("BitRefSelf");
24 core_log->add_sink(
26 LogManager::setLog("BitRefWorld");
27 core_log->add_sink(
29 LogManager::setLog("BitRefSync");
30 MOFEM_LOG_TAG("BitRefSelf", "BitRefManager");
31 MOFEM_LOG_TAG("BitRefWorld", "BitRefManager");
32 MOFEM_LOG_TAG("BitRefSync", "BitRefManager");
33 }
34
36 MOFEM_LOG("BitRefWorld", Sev::noisy) << "BitRefManager interface created";
37}
static LoggerType & setLog(const std::string channel)
Set ans resset chanel logger.
Definition: LogManager.cpp:389
#define MOFEM_LOG(channel, severity)
Log.
Definition: LogManager.hpp:308
#define MOFEM_LOG_TAG(channel, tag)
Tag channel.
Definition: LogManager.hpp:339
#define MOFEM_LOG_FUNCTION()
Set scope.
Definition: LogManager.hpp:325
Core (interface) class.
Definition: Core.hpp:82
static boost::shared_ptr< SinkType > createSink(boost::shared_ptr< std::ostream > stream_ptr, std::string comm_filter)
Create a sink object.
Definition: LogManager.cpp:298
static boost::shared_ptr< std::ostream > getStrmWorld()
Get the strm world object.
Definition: LogManager.cpp:344
static boost::shared_ptr< std::ostream > getStrmSync()
Get the strm sync object.
Definition: LogManager.cpp:348
static bool checkIfChannelExist(const std::string channel)
Check if channel exist.
Definition: LogManager.cpp:404
static boost::shared_ptr< std::ostream > getStrmSelf()
Get the strm self object.
Definition: LogManager.cpp:340

◆ ~BitRefManager()

virtual MoFEM::BitRefManager::~BitRefManager ( )
virtualdefault

Destructor.

Member Function Documentation

◆ filterEntitiesByRefLevel()

MoFEMErrorCode MoFEM::BitRefManager::filterEntitiesByRefLevel ( const BitRefLevel  bit,
const BitRefLevel  mask,
Range ents,
int  verb = QUIET 
) const

filter entities by bit ref level

Parameters
bit
mask
ents
QUIET
Returns
MoFEMErrorCode
Examples
hanging_node_approx.cpp.

Definition at line 746 of file BitRefManager.cpp.

749 {
750 MoFEM::Interface &m_field = cOre;
751 moab::Interface &moab(m_field.get_moab());
753
754 std::vector<EntityHandle> ents_vec;
755 ents_vec.reserve(ents.size());
756
757 std::vector<BitRefLevel *> tags_bits_ptr_vec(ents.size());
758
759 Range swap_ents;
760 auto hint = swap_ents.begin();
761
762 for (Range::pair_iterator p_eit = ents.pair_begin(); p_eit != ents.pair_end();
763 ++p_eit) {
764
765 EntityHandle f = p_eit->first;
766 const EntityHandle s = p_eit->second;
767
768 // get bits on entities
769 rval = moab.tag_get_by_ptr(cOre.get_th_RefBitLevel(), Range(f, s),
770 (const void **)(&*tags_bits_ptr_vec.begin()));
771
772 if (rval == MB_SUCCESS) {
773
774 auto bit_it = tags_bits_ptr_vec.begin();
775
776 auto check = [&bit, &mask](const auto &entity_bit) -> bool {
777 return
778
779 (entity_bit & bit).any() &&
780
781 ((entity_bit & mask) == entity_bit);
782 };
783
784 while (f != s + 1) {
785
786 while (f != s + 1 && !check(**bit_it)) {
787 ++bit_it;
788 ++f;
789 }
790
791 if (f != s + 1) {
792
793 const EntityHandle start = f;
794
795 while (f != (s + 1) && check(**bit_it)) {
796 ++bit_it;
797 ++f;
798 };
799
800 hint = swap_ents.insert(hint, start, f - 1);
801 }
802 }
803 }
804 }
805
806 ents.swap(swap_ents);
807
809}
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:447
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:440
auto bit
set bit
static MoFEMErrorCodeGeneric< moab::ErrorCode > rval
Definition: Exceptions.hpp:74
virtual moab::Interface & get_moab()=0
Tag get_th_RefBitLevel() const
Definition: Core.hpp:198
Deprecated interface functions.

◆ filterEntitiesNotInDatabase()

MoFEMErrorCode MoFEM::BitRefManager::filterEntitiesNotInDatabase ( Range ents) const

Get entities not in database.

Parameters
ents
Returns
MoFEMErrorCode

Definition at line 908 of file BitRefManager.cpp.

908 {
909 MoFEM::Interface &m_field = cOre;
910 auto ref_ents_ptr = m_field.get_ref_ents();
912 auto eit = ents.begin();
913 for (; eit != ents.end();) {
914 auto rit = ref_ents_ptr->get<Ent_mi_tag>().find(*eit);
915 if (rit != ref_ents_ptr->get<Ent_mi_tag>().end()) {
916 eit = ents.erase(eit);
917 } else {
918 eit++;
919 }
920 }
922}
virtual const RefEntity_multiIndex * get_ref_ents() const =0
Get the ref ents object.

◆ fixTagSize()

MoFEMErrorCode MoFEM::BitRefManager::fixTagSize ( moab::Interface &  moab,
bool changed = nullptr 
)
static

Fix tag size when BITREFLEVEL_SIZE of core library is different than file BITREFLEVEL_SIZE.

Returns
MoFEMErrorCode

Definition at line 1232 of file BitRefManager.cpp.

1232 {
1234 MOFEM_LOG_CHANNEL("WORLD");
1235
1236 if (changes)
1237 *changes = false;
1238
1239 if (Tag th = 0; moab.tag_get_handle("_RefBitLevel", th) == MB_SUCCESS) {
1240
1241 MOFEM_TAG_AND_LOG("WORLD", Sev::verbose, "BitRefManager") << "Tag found";
1242
1243 auto get_old_tag = [&](auto &&name) {
1244 Tag th;
1245 CHK_MOAB_THROW(moab.tag_get_handle(name, th),
1246 "bit ref level handle does not exist");
1247 return th;
1248 };
1249
1250 auto get_new_tag = [&](auto &&name, auto &&def_val) {
1251 Tag th;
1252 CHK_MOAB_THROW(moab.tag_get_handle(
1253 name, sizeof(BitRefLevel), MB_TYPE_OPAQUE, th,
1254 MB_TAG_CREAT | MB_TAG_BYTES | MB_TAG_SPARSE, &def_val),
1255 "can not create tag");
1256 return th;
1257 };
1258
1259 int length;
1260 CHKERR moab.tag_get_length(get_old_tag("_RefBitLevel"), length);
1261
1262 if (sizeof(BitRefLevel) != length) {
1263
1264 if(changes)
1265 *changes = true;
1266
1267 MOFEM_TAG_AND_LOG("WORLD", Sev::verbose, "BitRefManager")
1268 << "Fixing tag length";
1269
1270 Range all_ents;
1271 CHKERR moab.get_entities_by_type(0, MBENTITYSET, all_ents, true);
1272 CHKERR moab.get_entities_by_handle(0, all_ents, true);
1273
1274 auto process_tag = [&](auto &&name, auto &&def_val) {
1276 auto tag_old = get_old_tag(name);
1277 auto get_bits = [&]() {
1278 std::vector<BitRefLevel> bits;
1279 bits.reserve(all_ents.size());
1280 auto it_bit = bits.begin();
1281 for (auto e : all_ents) {
1282 const void *data;
1283 int data_size;
1284 CHKERR moab.tag_get_by_ptr(tag_old, &e, 1, (const void **)&data,
1285 &data_size);
1286 bcopy(
1287 data, &*it_bit,
1288 std::min(sizeof(BitRefLevel), static_cast<size_t>(data_size)));
1289 ++it_bit;
1290 }
1291 return bits;
1292 };
1293 auto bits = get_bits();
1294 CHKERR moab.tag_delete(tag_old);
1295 auto tag_new = get_new_tag(name, def_val);
1296 auto it_bit = bits.begin();
1297 for (auto e : all_ents) {
1298 if (it_bit->any()) {
1299 CHKERR moab.tag_set_data(tag_new, &e, 1, &*it_bit);
1300 }
1301 ++it_bit;
1302 }
1304 };
1305
1306 CHKERR process_tag("_RefBitLevel", BitRefLevel() = 0);
1307 CHKERR process_tag("_RefBitLevelMask", BitRefLevel().set());
1308 }
1309 }
1310
1311 MOFEM_LOG_CHANNEL("WORLD");
1313}
#define MOFEM_TAG_AND_LOG(channel, severity, tag)
Tag and log in channel.
Definition: LogManager.hpp:362
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:346
#define CHK_MOAB_THROW(err, msg)
Check error code of MoAB function and throw MoFEM exception.
Definition: definitions.h:576
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:416
#define CHKERR
Inline error check.
Definition: definitions.h:535
#define MOFEM_LOG_CHANNEL(channel)
Set and reset channel.
Definition: LogManager.hpp:284
std::bitset< BITREFLEVEL_SIZE > BitRefLevel
Bit structure attached to each entity identifying to what mesh entity is attached.
Definition: Types.hpp:40

◆ get_th_RefBitLevel()

Tag MoFEM::BitRefManager::get_th_RefBitLevel ( ) const
inline

Definition at line 709 of file BitRefManager.hpp.

709{ return cOre.get_th_RefBitLevel(); }

◆ get_th_RefParentHandle()

Tag MoFEM::BitRefManager::get_th_RefParentHandle ( ) const
inline

Definition at line 706 of file BitRefManager.hpp.

706 {
708 }
Tag get_th_RefParentHandle() const
Definition: Core.hpp:197

◆ getAllEntitiesNotInDatabase()

MoFEMErrorCode MoFEM::BitRefManager::getAllEntitiesNotInDatabase ( Range ents) const

Get all entities not in database.

Parameters
ents
Returns
MoFEMErrorCode

Definition at line 898 of file BitRefManager.cpp.

898 {
899 MoFEM::Interface &m_field = cOre;
900 moab::Interface &moab = m_field.get_moab();
902 CHKERR moab.get_entities_by_handle(0, ents, false);
903 ents = subtract(ents, ents.subset_by_type(MBENTITYSET));
906}
MoFEMErrorCode filterEntitiesNotInDatabase(Range &ents) const
Get entities not in database.

◆ getEntitiesByParentType()

MoFEMErrorCode MoFEM::BitRefManager::getEntitiesByParentType ( const BitRefLevel  bit,
const BitRefLevel  mask,
const EntityType  type,
Range ents,
const int  verb = QUIET 
) const

get entities by bit ref level and type of parent

Note
Entities have to be added to MoFEM database
Parameters
BitRefLevelbitLevel
BitRefLevelmask
typeof parent
entsreturned ents
Returns
error code

Definition at line 873 of file BitRefManager.cpp.

877 {
878 MoFEM::Interface &m_field = cOre;
879 auto ref_ents_ptr = m_field.get_ref_ents();
881 auto &ref_ents = ref_ents_ptr->get<Ent_Ent_mi_tag>();
882 auto it = ref_ents.lower_bound(get_id_for_min_type(type));
883 auto hi_it = ref_ents.upper_bound(get_id_for_max_type(type));
884 std::vector<EntityHandle> ents_vec;
885 ents_vec.reserve(std::distance(it, hi_it));
886 for (; it != hi_it; it++) {
887 const BitRefLevel &ent_bit = it->get()->getBitRefLevel();
888 if ((ent_bit & mask) == ent_bit && (ent_bit & bit).any())
889 ents_vec.emplace_back(it->get()->getEnt());
890 }
891 ents.insert_list(ents_vec.begin(), ents_vec.end());
892 if (verb > NOISY)
893 MOFEM_LOG("BitRefSelf", Sev::noisy)
894 << "getEntitiesByParentType: " << ents << endl;
896}
@ NOISY
Definition: definitions.h:211
EntityHandle get_id_for_max_type()
EntityHandle get_id_for_min_type()

◆ query_interface()

MoFEMErrorCode MoFEM::BitRefManager::query_interface ( boost::typeindex::type_index  type_index,
UnknownInterface **  iface 
) const
virtual

Implements MoFEM::UnknownInterface.

Definition at line 9 of file BitRefManager.cpp.

10 {
12 *iface = const_cast<BitRefManager *>(this);
14}
BitRefManager(const MoFEM::Core &core)

◆ writeBitLevel()

MoFEMErrorCode MoFEM::BitRefManager::writeBitLevel ( const BitRefLevel  bit,
const BitRefLevel  mask,
const char *  file_name,
const char *  file_type,
const char *  options,
const bool  check_for_empty = true 
) const

Write bit ref level to file.

Parameters
bitbit ref level
maskmask of bit ref level
dimdimension
file_namefile name (see moab documentation)
file_typefile type (see moab documentation)
optionsfile options (see moab documentation)
Returns
error code

Definition at line 634 of file BitRefManager.cpp.

639 {
640 MoFEM::Interface &m_field = cOre;
641 moab::Interface &moab(m_field.get_moab());
643 EntityHandle meshset;
644 CHKERR moab.create_meshset(MESHSET_SET, meshset);
645 CHKERR getEntitiesByRefLevel(bit, mask, meshset);
646 int nb_ents;
647 CHKERR moab.get_number_entities_by_handle(meshset, nb_ents, true);
648 if (check_for_empty && !nb_ents) {
649 MOFEM_LOG("SELF", Sev::warning)
650 << "No entities to save < " << file_name << " > in writeBitLevel";
652 }
653
654 CHKERR moab.write_file(file_name, file_type, options, &meshset, 1);
655 CHKERR moab.delete_entities(&meshset, 1);
657}
MoFEMErrorCode getEntitiesByRefLevel(const BitRefLevel bit, const BitRefLevel mask, const EntityHandle meshset, const int verb=QUIET) const
add all ents from ref level given by bit to meshset

◆ writeBitLevelByDim()

MoFEMErrorCode MoFEM::BitRefManager::writeBitLevelByDim ( const BitRefLevel  bit,
const BitRefLevel  mask,
const int  dim,
const char *  file_name,
const char *  file_type,
const char *  options,
const bool  check_for_empty = true 
) const

Write bit ref level to file.

Parameters
bitbit ref level
maskmask of bit ref level
dimdimension
file_namefile name (see moab documentation)
file_typefile type (see moab documentation)
optionsfile options (see moab documentation)
Returns
error code
Examples
hanging_node_approx.cpp.

Definition at line 660 of file BitRefManager.cpp.

663 {
664 MoFEM::Interface &m_field = cOre;
665 moab::Interface &moab(m_field.get_moab());
667 Range ents;
669 if (check_for_empty && ents.empty()) {
670 MOFEM_LOG("SELF", Sev::warning)
671 << "No entities to save < " << file_name << " > in writeBitLevelByDim";
673 }
674 EntityHandle meshset;
675 CHKERR moab.create_meshset(MESHSET_SET, meshset);
676 CHKERR moab.add_entities(meshset, ents);
677 CHKERR moab.write_file(file_name, file_type, options, &meshset, 1);
678 CHKERR moab.delete_entities(&meshset, 1);
680}
const int dim
MoFEMErrorCode getEntitiesByDimAndRefLevel(const BitRefLevel bit, const BitRefLevel mask, const int dim, const EntityHandle meshset, int verb=0) const
add all ents from ref level given by bit to meshset

◆ writeBitLevelByType()

MoFEMErrorCode MoFEM::BitRefManager::writeBitLevelByType ( const BitRefLevel  bit,
const BitRefLevel  mask,
const EntityType  type,
const char *  file_name,
const char *  file_type,
const char *  options,
const bool  check_for_empty = true 
) const

Write bit ref level to file.

Parameters
bitbit ref level
maskmask of bit ref level
typetype of entity
file_namefile name (see moab documentation)
file_typefile type (see moab documentation)
optionsfile options (see moab documentation)
Returns
error code

Definition at line 682 of file BitRefManager.cpp.

685 {
686 MoFEM::Interface &m_field = cOre;
687 moab::Interface &moab(m_field.get_moab());
689 Range ents;
690 CHKERR getEntitiesByTypeAndRefLevel(bit, mask, type, ents);
691 if (check_for_empty && ents.empty()) {
692 MOFEM_LOG("SELF", Sev::warning)
693 << "No entities to save < " << file_name << " > in writeBitLevelByType";
695 }
696 EntityHandle meshset;
697 CHKERR moab.create_meshset(MESHSET_SET, meshset);
698 CHKERR moab.add_entities(meshset, ents);
699 CHKERR moab.write_file(file_name, file_type, options, &meshset, 1);
700 CHKERR moab.delete_entities(&meshset, 1);
702}
MoFEMErrorCode getEntitiesByTypeAndRefLevel(const BitRefLevel bit, const BitRefLevel mask, const EntityType type, const EntityHandle meshset, int verb=0) const
add all ents from ref level given by bit to meshset

◆ writeEntitiesAllBitLevelsByType()

MoFEMErrorCode MoFEM::BitRefManager::writeEntitiesAllBitLevelsByType ( const BitRefLevel  mask,
const EntityType  type,
const char *  file_name,
const char *  file_type,
const char *  options 
)

Write all entities by bit levels and type.

Parameters
mask
type
file_name
file_type
options
Returns
MoFEMErrorCode

Definition at line 722 of file BitRefManager.cpp.

724 {
726 for (int ll = 0; ll != BITREFLEVEL_SIZE; ++ll) {
727 std::string name = boost::lexical_cast<std::string>(ll) + "_" + file_name;
728 CHKERR writeBitLevelByType(BitRefLevel().set(ll), mask, type, name.c_str(),
729 file_type, options, true);
730 }
732}
#define BITREFLEVEL_SIZE
max number of refinements
Definition: definitions.h:219
MoFEMErrorCode writeBitLevelByType(const BitRefLevel bit, const BitRefLevel mask, const EntityType type, const char *file_name, const char *file_type, const char *options, const bool check_for_empty=true) const
Write bit ref level to file.

◆ writeEntitiesNotInDatabase()

MoFEMErrorCode MoFEM::BitRefManager::writeEntitiesNotInDatabase ( const char *  file_name,
const char *  file_type,
const char *  options,
const bool  check_for_empty = true 
) const

Write ents not in database.

Parameters
file_name
file_typefor example "VTK"
options
check_for_empty
Returns
MoFEMErrorCode

Definition at line 704 of file BitRefManager.cpp.

706 {
707 MoFEM::Interface &m_field = cOre;
708 moab::Interface &moab(m_field.get_moab());
710 EntityHandle meshset;
711 Range ents;
713 if (check_for_empty && ents.empty())
715 CHKERR moab.create_meshset(MESHSET_SET, meshset);
716 CHKERR moab.add_entities(meshset, ents);
717 CHKERR moab.write_file(file_name, file_type, options, &meshset, 1);
718 CHKERR moab.delete_entities(&meshset, 1);
720}
MoFEMErrorCode getAllEntitiesNotInDatabase(Range &ents) const
Get all entities not in database.

Member Data Documentation

◆ cOre

MoFEM::Core& MoFEM::BitRefManager::cOre

Definition at line 26 of file BitRefManager.hpp.

◆ dEbug

bool MoFEM::BitRefManager::dEbug

Definition at line 27 of file BitRefManager.hpp.


The documentation for this struct was generated from the following files: