Structure for recording (time) series. More...

#include <src/multi_indices/SeriesMultiIndices.hpp>

Collaboration diagram for MoFEM::FieldSeries:

Public Member Functions
	FieldSeries (Interface &moab, const EntityHandle _meshset)

EntityHandle	getMeshset () const
	get meshset More...

EntityID	get_meshset_id () const

boost::string_ref	getNameRef () const
	get string_ref of series More...

std::string	getName () const
	get series name More...

MoFEMErrorCode	get_nb_steps (Interface &moab, int &nb_setps) const

MoFEMErrorCode	set_time (double time)

MoFEMErrorCode	push_dofs (const EntityHandle ent, const ShortId uid, const FieldData val)

template<typename IT >
MoFEMErrorCode	push_dofs (IT it, IT hi_it)

MoFEMErrorCode	begin ()

MoFEMErrorCode	end (double time=0)

MoFEMErrorCode	read (Interface &moab)

MoFEMErrorCode	save (Interface &moab) const

const FieldSeries *	get_FieldSeries_ptr () const

Public Attributes
EntityHandle	meshset

const void *	tagName
	tag keeps name of the series More...

int	tagNameSize
	number of bits necessary to keep field series More...

bool	record_begin

bool	record_end

Tag	th_SeriesData

Tag	th_SeriesDataUIDs

Tag	th_SeriesDataHandles

Tag	th_SeriesTime

std::vector< int >	ia

std::vector< double >	time

std::vector< EntityHandle >	handles

std::vector< ShortId >	uids

std::vector< FieldData >	data

Friends
std::ostream &	operator<< (std::ostream &os, const FieldSeries &e)

Detailed Description

Structure for recording (time) series.

Bug:

Fix member functions names. Not follow naming convention.

Member functions not documented

Definition at line 36 of file SeriesMultiIndices.hpp.

Constructor & Destructor Documentation

◆ FieldSeries()

MoFEM::FieldSeries::FieldSeries	(	Interface &	moab,
		const EntityHandle	_meshset
	)

Definition at line 21 of file SeriesMultiIndices.cpp.

     : meshset(_meshset), tagName(NULL), tagNameSize(0), record_begin(false),
       record_end(false) {
 
   Tag th_SeriesName;
   rval = moab.tag_get_handle("_SeriesName", th_SeriesName);
   MOAB_THROW(rval);
   rval = moab.tag_get_by_ptr(th_SeriesName, &meshset, 1,
                              (const void **)&tagName, &tagNameSize);
   MOAB_THROW(rval);
 
   const int def_val_len = 0;
 
   // time
   std::string Tag_SeriesTime = "_SeriesTime_" + getName();
   double def_time = 0;
   rval = moab.tag_get_handle(Tag_SeriesTime.c_str(), 1, MB_TYPE_DOUBLE,
                              th_SeriesTime, MB_TAG_CREAT | MB_TAG_SPARSE,
                              &def_time);
   MOAB_THROW(rval);
 
   // handles
   std::string Tag_DataHandles_SeriesName = "_SeriesDataHandles_" + getName();
   rval = moab.tag_get_handle(
       Tag_DataHandles_SeriesName.c_str(), def_val_len, MB_TYPE_HANDLE,
       th_SeriesDataHandles, MB_TAG_CREAT | MB_TAG_SPARSE | MB_TAG_VARLEN, NULL);
   MOAB_THROW(rval);
 
   // uids
   std::string Tag_DataUIDs_SeriesName = "_SeriesDataUIDs_" + getName();
   rval = moab.tag_get_handle(
       Tag_DataUIDs_SeriesName.c_str(), def_val_len, MB_TYPE_OPAQUE,
       th_SeriesDataUIDs,
       MB_TAG_CREAT | MB_TAG_SPARSE | MB_TAG_BYTES | MB_TAG_VARLEN, NULL);
   MOAB_THROW(rval);
 
   // data
   std::string Tag_Data_SeriesName = "_SeriesData_" + getName();
   rval = moab.tag_get_handle(
       Tag_Data_SeriesName.c_str(), def_val_len, MB_TYPE_OPAQUE, th_SeriesData,
       MB_TAG_CREAT | MB_TAG_SPARSE | MB_TAG_BYTES | MB_TAG_VARLEN, NULL);
   MOAB_THROW(rval);
 }

Member Function Documentation

◆ begin()

MoFEMErrorCode MoFEM::FieldSeries::begin ( )

Definition at line 85 of file SeriesMultiIndices.cpp.

                                   {
   MoFEMFunctionBegin;
   if (record_begin) {
     SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
             "recording already  begin");
   }
   record_begin = true;
   MoFEMFunctionReturn(0);
 }

◆ end()

MoFEMErrorCode MoFEM::FieldSeries::end ( double time = 0 )

Definition at line 95 of file SeriesMultiIndices.cpp.

                                         {
   MoFEMFunctionBegin;
   if (!record_begin) {
     SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
             "recording not begin it can not be ended");
   }
   record_begin = false;
   record_end = true;
   ia.push_back(uids.size());
   time.push_back(t);
   MoFEMFunctionReturn(0);
 }

◆ get_FieldSeries_ptr()

const FieldSeries* MoFEM::FieldSeries::get_FieldSeries_ptr ( ) const

Definition at line 94 of file SeriesMultiIndices.hpp.

                                                         {
     return const_cast<FieldSeries *>(this);
   };

◆ get_meshset_id()

EntityID MoFEM::FieldSeries::get_meshset_id ( ) const

Definition at line 49 of file SeriesMultiIndices.hpp.

                                          {
     return (EntityID)(meshset & MB_ID_MASK);
   }

◆ get_nb_steps()

MoFEMErrorCode MoFEM::FieldSeries::get_nb_steps	(	Interface &	moab,
		int &	nb_setps
	)		const

Definition at line 65 of file SeriesMultiIndices.cpp.

                                                               {
   MoFEMFunctionBegin;
   CHKERR moab.num_contained_meshsets(meshset, &nb_steps);
   MoFEMFunctionReturn(0);
 }

◆ getMeshset()

EntityHandle MoFEM::FieldSeries::getMeshset ( ) const

get meshset

Definition at line 48 of file SeriesMultiIndices.hpp.

48 { return meshset; }

MoFEM::FieldSeries::meshset

EntityHandle meshset

Definition: SeriesMultiIndices.hpp:38

◆ getName()

std::string MoFEM::FieldSeries::getName ( ) const

get series name

Definition at line 57 of file SeriesMultiIndices.hpp.

                                    {
     return std::string((char *)tagName, tagNameSize);
   }

◆ getNameRef()

boost::string_ref MoFEM::FieldSeries::getNameRef ( ) const

get string_ref of series

Definition at line 53 of file SeriesMultiIndices.hpp.

                                             {
     return boost::string_ref((char *)tagName, tagNameSize);
   }

◆ push_dofs() [1/2]

MoFEMErrorCode MoFEM::FieldSeries::push_dofs	(	const EntityHandle	ent,
		const ShortId	uid,
		const FieldData	val
	)

Definition at line 72 of file SeriesMultiIndices.cpp.

                                                            {
   MoFEMFunctionBegin;
   if (!record_begin) {
     SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
             "you neet to set recording");
   }
   handles.push_back(ent);
   uids.push_back(uid);
   data.push_back(val);
   MoFEMFunctionReturn(0);
 }

◆ push_dofs() [2/2]

template<typename IT >

MoFEMErrorCode MoFEM::FieldSeries::push_dofs	(	IT	it,
		IT	hi_it
	)

Definition at line 78 of file SeriesMultiIndices.hpp.

                                                                    {
     MoFEMFunctionBeginHot;
 
     for (; it != hi_it; it++) {
       ierr = push_dofs((*it)->getEnt(), (*it)->getNonNonuniqueShortId(),
                        (*it)->getFieldData());
       CHKERRG(ierr);
     }
     MoFEMFunctionReturnHot(0);
   }

◆ read()

MoFEMErrorCode MoFEM::FieldSeries::read ( Interface & moab )

Definition at line 108 of file SeriesMultiIndices.cpp.

                                                     {
   MoFEMFunctionBegin;
 
   if (record_begin) {
     SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
             "all series data will be lost");
   }
   if (record_end) {
     SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
             "all series data will be lost");
   }
 
   std::vector<EntityHandle> contained;
   CHKERR moab.get_contained_meshsets(meshset, contained);
   ia.resize(0);
   time.resize(0);
   handles.resize(0);
   uids.resize(0);
   data.resize(0);
   ia.push_back(0);
 
   for (unsigned int mm = 0; mm < contained.size(); mm++) {
     // time
     {
       double t;
       CHKERR moab.tag_set_data(th_SeriesTime, &meshset, 1, &t);
       time.push_back(t);
     }
     // handles
     {
       const EntityHandle *tag_data;
       int tag_size;
       CHKERR moab.tag_get_by_ptr(th_SeriesDataHandles, &meshset, 1,
                                  (const void **)&tag_data, &tag_size);
       handles.insert(handles.end(), tag_data, &tag_data[tag_size]);
     }
     // uids
     {
       const ShortId *tag_data;
       int tag_size;
       CHKERR moab.tag_get_by_ptr(th_SeriesDataUIDs, &meshset, 1,
                                  (const void **)&tag_data, &tag_size);
       int nb = tag_size / sizeof(ShortId);
       uids.insert(uids.end(), tag_data, &tag_data[nb]);
     }
     if (handles.size() != uids.size()) {
       SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY, "data inconsistency");
     }
     // data
     {
       const FieldData *tag_data;
       int tag_size;
       CHKERR moab.tag_get_by_ptr(th_SeriesData, &meshset, 1,
                                  (const void **)&tag_data, &tag_size);
       int nb = tag_size / sizeof(FieldData);
       data.insert(data.end(), tag_data, &tag_data[nb]);
     }
     if (data.size() != uids.size()) {
       SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY, "data inconsistency");
     }
     ia.push_back(data.size());
   }
 
   MoFEMFunctionReturn(0);
 }

◆ save()

MoFEMErrorCode MoFEM::FieldSeries::save ( Interface & moab ) const

Definition at line 174 of file SeriesMultiIndices.cpp.

                                                           {
   MoFEMFunctionBegin;
 
   if (record_begin) {
     SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY, "switch off recording");
   }
   if (!record_end) {
     SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY, "finish recording");
   }
 
   std::vector<EntityHandle> contained;
   CHKERR moab.get_contained_meshsets(meshset, contained);
   unsigned int nb_contained = contained.size();
   if (nb_contained < ia.size() - 1) {
     contained.resize(ia.size());
   }
   for (unsigned int mm = ia.size() - 1; mm < nb_contained; mm++) {
     CHKERR moab.remove_entities(meshset, &contained[mm], 1);
     CHKERR moab.delete_entities(&contained[mm], 1);
   }
   for (unsigned int mm = nb_contained; mm < ia.size() - 1; mm++) {
     EntityHandle new_meshset;
     CHKERR moab.create_meshset(MESHSET_SET, new_meshset);
     CHKERR moab.add_entities(meshset, &new_meshset, 1);
   }
   contained.resize(0);
   CHKERR moab.get_contained_meshsets(meshset, contained);
   if (contained.size() != ia.size() - 1) {
     SETERRQ2(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
              "data inconsistency nb_contained != ia.size()-1 %d!=%d",
              contained.size(), ia.size() - 1);
   }
 
   // time
   for (unsigned int ii = 1; ii < ia.size(); ii++) {
     CHKERR moab.tag_set_data(th_SeriesTime, &contained[ii - 1], 1,
                              &time[ii - 1]);
   }
 
   // handles
   for (unsigned int ii = 1; ii < ia.size(); ii++) {
     void const *tag_data[] = {&handles[ia[ii - 1]]};
     int tag_sizes[] = {(ia[ii] - ia[ii - 1])};
     CHKERR moab.tag_set_by_ptr(th_SeriesDataHandles, &contained[ii - 1], 1,
                                tag_data, tag_sizes);
   }
   // uids
   for (unsigned int ii = 1; ii < ia.size(); ii++) {
     void const *tag_data[] = {&uids[ia[ii - 1]]};
     int tag_sizes[] = {(ia[ii] - ia[ii - 1]) * (int)sizeof(ShortId)};
     CHKERR moab.tag_set_by_ptr(th_SeriesDataUIDs, &contained[ii - 1], 1,
                                tag_data, tag_sizes);
   }
 
   // data
   for (unsigned int ii = 1; ii < ia.size(); ii++) {
     void const *tag_data[] = {&data[ia[ii - 1]]};
     int tag_sizes[] = {(ia[ii] - ia[ii - 1]) * (int)sizeof(FieldData)};
     CHKERR moab.tag_set_by_ptr(th_SeriesData, &contained[ii - 1], 1, tag_data,
                                tag_sizes);
   }
 
   MoFEMFunctionReturn(0);
 }

◆ set_time()

MoFEMErrorCode MoFEM::FieldSeries::set_time ( double time )

Friends And Related Function Documentation

◆ operator<<

std::ostream& operator<<	(	std::ostream &	os,
		const FieldSeries &	e
	)

friend

Definition at line 336 of file SeriesMultiIndices.cpp.

                                                              {
   os << "name " << e.getName() << " meshset " << e.getMeshset();
   return os;
 }

Member Data Documentation

◆ data

std::vector<FieldData> MoFEM::FieldSeries::data

Definition at line 72 of file SeriesMultiIndices.hpp.

◆ handles

std::vector<EntityHandle> MoFEM::FieldSeries::handles

Definition at line 70 of file SeriesMultiIndices.hpp.

◆ ia

std::vector<int> MoFEM::FieldSeries::ia

Definition at line 68 of file SeriesMultiIndices.hpp.

◆ meshset

EntityHandle MoFEM::FieldSeries::meshset

Definition at line 38 of file SeriesMultiIndices.hpp.

◆ record_begin

bool MoFEM::FieldSeries::record_begin

Definition at line 42 of file SeriesMultiIndices.hpp.

◆ record_end

bool MoFEM::FieldSeries::record_end

Definition at line 43 of file SeriesMultiIndices.hpp.

◆ tagName

const void* MoFEM::FieldSeries::tagName

tag keeps name of the series

Definition at line 39 of file SeriesMultiIndices.hpp.

◆ tagNameSize

int MoFEM::FieldSeries::tagNameSize

number of bits necessary to keep field series

Definition at line 40 of file SeriesMultiIndices.hpp.

◆ th_SeriesData

Tag MoFEM::FieldSeries::th_SeriesData

Definition at line 61 of file SeriesMultiIndices.hpp.

◆ th_SeriesDataHandles

Tag MoFEM::FieldSeries::th_SeriesDataHandles

Definition at line 63 of file SeriesMultiIndices.hpp.

◆ th_SeriesDataUIDs

Tag MoFEM::FieldSeries::th_SeriesDataUIDs

Definition at line 62 of file SeriesMultiIndices.hpp.

◆ th_SeriesTime

Tag MoFEM::FieldSeries::th_SeriesTime

Definition at line 64 of file SeriesMultiIndices.hpp.

◆ time

std::vector<double> MoFEM::FieldSeries::time

Definition at line 69 of file SeriesMultiIndices.hpp.

◆ uids

std::vector<ShortId> MoFEM::FieldSeries::uids

Definition at line 71 of file SeriesMultiIndices.hpp.

The documentation for this struct was generated from the following files:

src/multi_indices/SeriesMultiIndices.hpp
src/multi_indices/impl/SeriesMultiIndices.cpp

Public Member Functions

Public Attributes

Friends