MoFEM::ForcesAndSourcesCore Struct Reference

structure to get information form mofem into DataForcesAndSourcesCore More...

#include <src/finite_elements/ForcesAndSourcesCore.hpp>

Inheritance diagram for MoFEM::ForcesAndSourcesCore:

Collaboration diagram for MoFEM::ForcesAndSourcesCore:

Classes
struct	UserDataOperator
	Data operator to do calculations at integration points.Is inherited and implemented by user to do calculations. It can be used in many different ways but typically is used to integrate matrices (f.e. stiffness matrix) and the right hand vector (f.e. force vector). More...

Public Types
typedef boost::function< int(int order_row, int order_col, int order_data)>	RuleHookFun
Public Types inherited from MoFEM::KspMethod
enum	KSPContext { CTX_SETFUNCTION, CTX_OPERATORS, CTX_KSPNONE }
	pass information about context of KSP/DM for with finite element is computed More...
Public Types inherited from MoFEM::SnesMethod
enum	SNESContext { CTX_SNESSETFUNCTION, CTX_SNESSETJACOBIAN, CTX_SNESNONE }
Public Types inherited from MoFEM::TSMethod
enum	TSContext {   CTX_TSSETRHSFUNCTION, CTX_TSSETRHSJACOBIAN, CTX_TSSETIFUNCTION, CTX_TSSETIJACOBIAN,   CTX_TSTSMONITORSET, CTX_TSNONE }

Public Member Functions
	ForcesAndSourcesCore (MoFEM::Interface &m_field)
virtual	~ForcesAndSourcesCore ()
PetscErrorCode	getNumberOfNodes (int &num_nodes) const
int	getMaxDataOrder () const
	Get max order of approximation for data fields. More...
int	getMaxRowOrder () const
	Get max order of approximation for field in rows. More...
int	getMaxColOrder () const
	Get max order of approximation for field in columns. More...
PetscErrorCode	getSense (EntityType type, boost::ptr_vector< DataForcesAndSourcesCore::EntData > &data) const
	get sense (orientation) of entity More...
PetscErrorCode	getDataOrder (const EntityType type, const FieldSpace space, boost::ptr_vector< DataForcesAndSourcesCore::EntData > &data) const
	get maximal approximation order of approximation on the entity More...
PetscErrorCode	getDataOrderSpaceAndBase (const std::string &field_name, const EntityType type, boost::ptr_vector< DataForcesAndSourcesCore::EntData > &data) const
	get maximal approximation order on entity More...
PetscErrorCode	getEdgesSense (DataForcesAndSourcesCore &data) const
PetscErrorCode	getTrisSense (DataForcesAndSourcesCore &data) const
PetscErrorCode	getQuadSense (DataForcesAndSourcesCore &data) const
PetscErrorCode	getEdgesDataOrder (DataForcesAndSourcesCore &data, const FieldSpace space) const
PetscErrorCode	getTrisDataOrder (DataForcesAndSourcesCore &data, const FieldSpace space) const
PetscErrorCode	getQuadDataOrder (DataForcesAndSourcesCore &data, const FieldSpace space) const
PetscErrorCode	getTetDataOrder (DataForcesAndSourcesCore &data, const FieldSpace space) const
PetscErrorCode	getPrismDataOrder (DataForcesAndSourcesCore &data, const FieldSpace space) const
PetscErrorCode	getEdgesDataOrderSpaceAndBase (DataForcesAndSourcesCore &data, const std::string &field_name) const
PetscErrorCode	getTrisDataOrderSpaceAndBase (DataForcesAndSourcesCore &data, const std::string &field_name) const
PetscErrorCode	getQuadDataOrderSpaceAndBase (DataForcesAndSourcesCore &data, const std::string &field_name) const
PetscErrorCode	getTetDataOrderSpaceAndBase (DataForcesAndSourcesCore &data, const std::string &field_name) const
PetscErrorCode	getPrismDataOrderSpaceAndBase (DataForcesAndSourcesCore &data, const std::string &field_name) const
PetscErrorCode	getNodesIndices (const boost::string_ref field_name, FENumeredDofEntity_multiIndex &dofs, VectorInt &nodes_indices, VectorInt &local_nodes_indices) const
	get node indices More...
PetscErrorCode	getTypeIndices (const boost::string_ref field_name, FENumeredDofEntity_multiIndex &dofs, EntityType type, int side_number, VectorInt &indices, VectorInt &local_indices) const
	get indices by type (generic function) More...
PetscErrorCode	getTypeIndices (const boost::string_ref field_name, FENumeredDofEntity_multiIndex &dofs, EntityType type, boost::ptr_vector< DataForcesAndSourcesCore::EntData > &data) const
	get indices by type (generic function) More...
PetscErrorCode	getRowNodesIndices (DataForcesAndSourcesCore &data, const std::string &field_name) const
	get row node indices from FENumeredDofEntity_multiIndex More...
PetscErrorCode	getColNodesIndices (DataForcesAndSourcesCore &data, const std::string &field_name) const
	get col node indices from FENumeredDofEntity_multiIndex More...
PetscErrorCode	getEdgesRowIndices (DataForcesAndSourcesCore &data, const std::string &field_name) const
	get Edges row indices from FENumeredDofEntity_multiIndex More...
PetscErrorCode	getEdgesColIndices (DataForcesAndSourcesCore &data, const std::string &field_name) const
	get Edges col indices from FENumeredDofEntity_multiIndex More...
PetscErrorCode	getTrisRowIndices (DataForcesAndSourcesCore &data, const std::string &field_name) const
	get Tris row indices from FENumeredDofEntity_multiIndex More...
PetscErrorCode	getTrisColIndices (DataForcesAndSourcesCore &data, const std::string &field_name) const
	get Tris col indices from FENumeredDofEntity_multiIndex More...
PetscErrorCode	getTetsRowIndices (DataForcesAndSourcesCore &data, const std::string &field_name) const
	get Tets row indices from FENumeredDofEntity_multiIndex More...
PetscErrorCode	getTetsColIndices (DataForcesAndSourcesCore &data, const std::string &field_name) const
	get Tets col indices from FENumeredDofEntity_multiIndex More...
PetscErrorCode	getQuadRowIndices (DataForcesAndSourcesCore &data, const std::string &field_name) const
	get Quad row indices from FENumeredDofEntity_multiIndex More...
PetscErrorCode	getQuadColIndices (DataForcesAndSourcesCore &data, const std::string &field_name) const
	get Quad col indices from FENumeredDofEntity_multiIndex More...
PetscErrorCode	getPrismRowIndices (DataForcesAndSourcesCore &data, const std::string &field_name) const
	get Prism row indices from FENumeredDofEntity_multiIndex More...
PetscErrorCode	getPrismColIndices (DataForcesAndSourcesCore &data, const std::string &field_name) const
	get Prism col indices from FENumeredDofEntity_multiIndex More...
PetscErrorCode	getNoFieldIndices (const std::string &field_name, FENumeredDofEntity_multiIndex &dofs, VectorInt &nodes_indices) const
	get NoField indices More...
PetscErrorCode	getNoFieldRowIndices (DataForcesAndSourcesCore &data, const std::string &field_name) const
	get col NoField indices More...
PetscErrorCode	getNoFieldColIndices (DataForcesAndSourcesCore &data, const std::string &field_name) const
	get col NoField indices More...
PetscErrorCode	getNodesFieldData (const boost::string_ref field_name, FEDofEntity_multiIndex &dofs, VectorDouble &nodes_data, VectorDofs &nodes_dofs, FieldSpace &space, FieldApproximationBase &base) const
	Get field data on nodes. More...
PetscErrorCode	getTypeFieldData (const boost::string_ref field_name, FEDofEntity_multiIndex &dofs, EntityType type, int side_number, VectorDouble &ent_field_data, VectorDofs &ent_field_dofs) const
	Get field data on entities. More...
PetscErrorCode	getTypeFieldData (const boost::string_ref field_name, FEDofEntity_multiIndex &dofs, EntityType type, boost::ptr_vector< DataForcesAndSourcesCore::EntData > &data) const
PetscErrorCode	getNoFieldFieldData (const boost::string_ref field_name, FEDofEntity_multiIndex &dofs, VectorDouble &ent_field_data, VectorDofs &ent_field_dofs) const
PetscErrorCode	getNoFieldFieldData (DataForcesAndSourcesCore &data, const boost::string_ref field_name) const
PetscErrorCode	getNodesFieldData (DataForcesAndSourcesCore &data, const std::string &field_name) const
	Get data on nodes. More...
PetscErrorCode	getEdgesFieldData (DataForcesAndSourcesCore &data, const std::string &field_name) const
PetscErrorCode	getTrisFieldData (DataForcesAndSourcesCore &data, const std::string &field_name) const
PetscErrorCode	getQuadFieldData (DataForcesAndSourcesCore &data, const std::string &field_name) const
PetscErrorCode	getTetsFieldData (DataForcesAndSourcesCore &data, const std::string &field_name) const
PetscErrorCode	getPrismFieldData (DataForcesAndSourcesCore &data, const std::string &field_name) const
PetscErrorCode	getFaceTriNodes (DataForcesAndSourcesCore &data) const
	Get nodes on triangles. More...
PetscErrorCode	getSpacesAndBaseOnEntities (DataForcesAndSourcesCore &data) const
	Get field approximation space and base on entities. More...
PetscErrorCode	getProblemNodesIndices (const std::string &field_name, const NumeredDofEntity_multiIndex &dofs, VectorInt &nodes_indices) const
	get indices of nodal indices which are declared for problem but not this particular element More...
PetscErrorCode	getProblemTypeIndices (const std::string &field_name, const NumeredDofEntity_multiIndex &dofs, EntityType type, int side_number, VectorInt &indices) const
	get indices by type (generic function) which are declared for problem but not this particular element More...
PetscErrorCode	getProblemNodesRowIndices (const std::string &field_name, VectorInt &nodes_indices) const
PetscErrorCode	getProblemTypeRowIndices (const std::string &field_name, EntityType type, int side_number, VectorInt &indices) const
PetscErrorCode	getProblemNodesColIndices (const std::string &field_name, VectorInt &nodes_indices) const
PetscErrorCode	getProblemTypeColIndices (const std::string &field_name, EntityType type, int side_number, VectorInt &indices) const
virtual int	getRule (int order)
	set integration rule for finite element More...
virtual int	getRule (int order_row, int order_col, int order_data)
	another variant of getRule More...
virtual PetscErrorCode	setGaussPts (int order)
	It will be removed in the future use other variant. More...
virtual PetscErrorCode	setGaussPts (int order_row, int order_col, int order_data)
	set user specific integration rule More...
boost::ptr_vector< UserDataOperator > &	getOpPtrVector ()
	Use to push back operator for row operator. More...
virtual PetscErrorCode	preProcess ()
	function is run at the beginning of loop More...
virtual PetscErrorCode	operator() ()
	function is run for every finite element More...
virtual PetscErrorCode	postProcess ()
	function is run at the end of loop More...
Public Member Functions inherited from MoFEM::FEMethod
PetscErrorCode	queryInterface (const MOFEMuuid &uuid, UnknownInterface **iface)
	FEMethod ()
template<class MULTIINDEX >
MULTIINDEX::iterator	get_begin (const MULTIINDEX &index, const std::string &field_name, const EntityType type, const int side_number) const
template<class MULTIINDEX >
MULTIINDEX::iterator	get_end (const MULTIINDEX &index, const std::string &field_name, const EntityType type, const int side_number) const
template<class MULTIINDEX >
MULTIINDEX::iterator	get_begin (const MULTIINDEX &index, const std::string &field_name, const EntityType type) const
template<class MULTIINDEX >
MULTIINDEX::iterator	get_end (const MULTIINDEX &index, const std::string &field_name, const EntityType type) const
template<class MULTIINDEX >
MULTIINDEX::iterator	get_begin (const MULTIINDEX &index, const std::string &field_name) const
template<class MULTIINDEX >
MULTIINDEX::iterator	get_end (const MULTIINDEX &index, const std::string &field_name) const
template<class MULTIINDEX >
MULTIINDEX::iterator	get_begin (const MULTIINDEX &index, const EntityHandle ent) const
template<class MULTIINDEX >
MULTIINDEX::iterator	get_end (const MULTIINDEX &index, const EntityHandle ent) const
template<class MULTIINDEX >
MULTIINDEX::iterator	get_begin (const MULTIINDEX &index, const std::string &field_name, const EntityHandle ent) const
template<class MULTIINDEX >
MULTIINDEX::iterator	get_end (const MULTIINDEX &index, const std::string &field_name, const EntityHandle ent) const
Public Member Functions inherited from MoFEM::BasicMethod
	BasicMethod ()
virtual	~BasicMethod ()
int	getNinTheLoop () const
	get number of evaluated element in the loop More...
int	getLoopSize () const
	get loop size More...
PetscErrorCode	copyBasicMethod (const BasicMethod &basic)
Public Member Functions inherited from MoFEM::KspMethod
	KspMethod ()
virtual	~KspMethod ()
PetscErrorCode	setKspCtx (const KSPContext &ctx)
	set operator type More...
PetscErrorCode	setKsp (KSP ksp)
	set solver More...
PetscErrorCode	copyKsp (const KspMethod &ksp)
	copy data form another method More...
Public Member Functions inherited from MoFEM::UnknownInterface
virtual	~UnknownInterface ()
virtual PetscErrorCode	getLibVersion (Version &version) const
	Get library version. More...
virtual const PetscErrorCode	getFileVersion (moab::Interface &moab, Version &version) const
	Get database major version. More...
virtual PetscErrorCode	getInterfaceVersion (Version &version) const
	Get database major version. More...
Public Member Functions inherited from MoFEM::SnesMethod
	SnesMethod ()
virtual	~SnesMethod ()
PetscErrorCode	setSnesCtx (const SNESContext &ctx)
	Set SNES context. More...
PetscErrorCode	setSnes (SNES snes)
	Set SNES instance. More...
PetscErrorCode	copySnes (const SnesMethod &snes)
	Copy snes data. More...
DEPRECATED PetscErrorCode	set_snes (SNES snes)
DEPRECATED PetscErrorCode	set_snes_ctx (const SNESContext &ctx)
DEPRECATED PetscErrorCode	copy_snes (const SnesMethod &snes)
Public Member Functions inherited from MoFEM::TSMethod
	TSMethod ()
virtual	~TSMethod ()
PetscErrorCode	setTsCtx (const TSContext &ctx)
	Set Ts context. More...
PetscErrorCode	copyTs (const TSMethod &ts)
	Copy TS solver data. More...
PetscErrorCode	setTs (TS _ts)
	Set TS solver. More...
DEPRECATED PetscErrorCode	set_ts_ctx (const TSContext &ctx)
DEPRECATED PetscErrorCode	copy_ts (const TSMethod &ts)
DEPRECATED PetscErrorCode	set_ts (TS _ts)

Public Attributes
Interface &	mField
RuleHookFun	getRuleHook
	Hook to get rule. More...
boost::ptr_vector< UserDataOperator >	opPtrVector
Public Attributes inherited from MoFEM::FEMethod
std::string	feName
boost::shared_ptr< const NumeredEntFiniteElement >	numeredEntFiniteElementPtr
boost::shared_ptr< const FENumeredDofEntity_multiIndex >	rowPtr
boost::shared_ptr< const FENumeredDofEntity_multiIndex >	colPtr
boost::shared_ptr< const FEDofEntity_multiIndex >	dataPtr
Public Attributes inherited from MoFEM::BasicMethod
int	nInTheLoop
int	loopSize
int	rAnk
int	sIze
const RefEntity_multiIndex *	refinedEntitiesPtr
const RefElement_multiIndex *	refinedFiniteElementsPtr
const Problem *	problemPtr
const Field_multiIndex *	fieldsPtr
const FieldEntity_multiIndex *	entitiesPtr
const DofEntity_multiIndex *	dofsPtr
const FiniteElement_multiIndex *	finiteElementsPtr
const EntFiniteElement_multiIndex *	finiteElementsEntitiesPtr
const FieldEntityEntFiniteElementAdjacencyMap_multiIndex *	adjacenciesPtr
boost::function< PetscErrorCode()>	preProcessHook
boost::function< PetscErrorCode()>	postProcessHook
boost::function< PetscErrorCode()>	operatorHook
Public Attributes inherited from MoFEM::KspMethod
KSPContext	ksp_ctx
	Context. More...
KSP	ksp
	KSP solver. More...
Vec	ksp_f
	the right hand side vector More...
Mat	ksp_A
	matrix More...
Mat	ksp_B
	preconditioner matrix More...
Public Attributes inherited from MoFEM::SnesMethod
SNESContext	snes_ctx
SNES	snes
Vec	snes_x
Vec	snes_f
Mat	snes_A
Mat	snes_B
Public Attributes inherited from MoFEM::TSMethod
TSContext	ts_ctx
TS	ts
Vec	ts_u
Vec	ts_u_t
Vec	ts_F
Mat	ts_A
Mat	ts_B
PetscInt	ts_step
PetscReal	ts_a
PetscReal	ts_t

Detailed Description

structure to get information form mofem into DataForcesAndSourcesCore

Definition at line 36 of file ForcesAndSourcesCore.hpp.

Member Typedef Documentation

RuleHookFun

typedef boost::function<int (int order_row,int order_col,int order_data)> MoFEM::ForcesAndSourcesCore::RuleHookFun

Definition at line 311 of file ForcesAndSourcesCore.hpp.

Constructor & Destructor Documentation

ForcesAndSourcesCore()

MoFEM::ForcesAndSourcesCore::ForcesAndSourcesCore

(

MoFEM::Interface &

m_field

)

Definition at line 39 of file ForcesAndSourcesCore.hpp.

                                               :
  mField(m_field),
  getRuleHook(0) {
  }

~ForcesAndSourcesCore()

virtual MoFEM::ForcesAndSourcesCore::~ForcesAndSourcesCore ( )

virtual

Definition at line 43 of file ForcesAndSourcesCore.hpp.

                                  {

  }

Member Function Documentation

getColNodesIndices()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getColNodesIndices	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

get col node indices from FENumeredDofEntity_multiIndex

Definition at line 414 of file ForcesAndSourcesCore.cpp.

                                                                                                                        {

  PetscFunctionBegin;
  ierr = getNodesIndices(
    field_name,const_cast<FENumeredDofEntity_multiIndex&>(numeredEntFiniteElementPtr->getColsDofs()),
    data.dataOnEntities[MBVERTEX][0].getIndices(),data.dataOnEntities[MBVERTEX][0].getLocalIndices()
  ); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getDataOrder()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getDataOrder	(	const EntityType	type,
		const FieldSpace	space,
		boost::ptr_vector< DataForcesAndSourcesCore::EntData > &	data
	)		const

get maximal approximation order of approximation on the entity

Definition at line 177 of file ForcesAndSourcesCore.cpp.

                                                                                                                                                           {
  PetscFunctionBegin;
  try {
    SideNumber_multiIndex& side_table = const_cast<SideNumber_multiIndex&>(numeredEntFiniteElementPtr->getSideNumberTable());
    if(data.size() < side_table.get<2>().count(type)) {
      // prims has 9 edges, some of edges for "flat" prism are not active
      SETERRQ2(PETSC_COMM_SELF,MOFEM_DATA_INCONSISTENCY,
        "data inconsistency %d < %d",
        data.size(),side_table.get<2>().count(type)
      );
    }
    for(unsigned int side = 0;side<data.size();side++) {
      data[side].getDataOrder() = 0;
    }
    FEDofEntity_multiIndex::index<Composite_EntType_and_Space_mi_tag>::type &data_dofs =
    const_cast<FEDofEntity_multiIndex::index<Composite_EntType_and_Space_mi_tag>::type&>(
      numeredEntFiniteElementPtr->getDataDofs().get<Composite_EntType_and_Space_mi_tag>()
    );
    FEDofEntity_multiIndex::index<Composite_EntType_and_Space_mi_tag>::type::iterator dit,hi_dit;
    dit = data_dofs.lower_bound(boost::make_tuple(type,space));
    hi_dit = data_dofs.upper_bound(boost::make_tuple(type,space));
    for(;dit!=hi_dit;dit++) {
      ApproximationOrder ent_order = (*dit)->getMaxOrder();
      int side_number = (*dit)->sideNumberPtr->side_number;
      if(side_number < 0) {
        SETERRQ(PETSC_COMM_SELF,MOFEM_DATA_INCONSISTENCY,"data inconsistency");
      }
      data[side_number].getDataOrder() = data[side_number].getDataOrder() > ent_order ? data[side_number].getDataOrder() : ent_order;
      if((*dit)->sideNumberPtr->brother_side_number!=-1) {
        if(data.size() < (unsigned int)(*dit)->sideNumberPtr->brother_side_number) {
          SETERRQ(PETSC_COMM_SELF,MOFEM_DATA_INCONSISTENCY,"data inconsistency");
        }
        data[(*dit)->sideNumberPtr->brother_side_number].getDataOrder() = data[side_number].getDataOrder();
      }
    }
  } catch (std::exception& ex) {
    std::ostringstream ss;
    ss << "thorw in method: " << ex.what() << " at line " << __LINE__ << " in file " << __FILE__;
    SETERRQ(PETSC_COMM_SELF,MOFEM_STD_EXCEPTION_THROW,ss.str().c_str());
  }
  PetscFunctionReturn(0);
}

getDataOrderSpaceAndBase()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getDataOrderSpaceAndBase	(	const std::string &	field_name,
		const EntityType	type,
		boost::ptr_vector< DataForcesAndSourcesCore::EntData > &	data
	)		const

get maximal approximation order on entity

Definition at line 255 of file ForcesAndSourcesCore.cpp.

        {
  PetscFunctionBegin;

  SideNumber_multiIndex& side_table = const_cast<SideNumber_multiIndex&>(numeredEntFiniteElementPtr->getSideNumberTable());
  if(data.size() < side_table.get<2>().count(type)) {
    // prims has 9 edges, some of edges for "flat" prism are not active
    SETERRQ2(
      PETSC_COMM_SELF,
      MOFEM_DATA_INCONSISTENCY,
      "data inconsistency %d < %d",
      data.size(),side_table.get<2>().count(type)
    );
  }

  for(unsigned int side = 0;side<data.size();side++) {
    data[side].getDataOrder() = 0;
    data[side].getBase() = NOBASE;
    data[side].getSpace() = NOSPACE;
  }

  const FEDofEntity_multiIndex::index<Composite_Name_Type_And_Side_Number_mi_tag>::type
  &data_dofs = numeredEntFiniteElementPtr->getDataDofs().get<Composite_Name_Type_And_Side_Number_mi_tag>();
  FEDofEntity_multiIndex::index<Composite_Name_Type_And_Side_Number_mi_tag>::type::iterator dit,hi_dit;
  dit = data_dofs.lower_bound(boost::make_tuple(field_name,type,0));
  if(dit == data_dofs.end()) {
    PetscFunctionReturn(0);
  }
  hi_dit = data_dofs.lower_bound(boost::make_tuple(field_name,type,data.size()));

  for(;dit!=hi_dit;) {

    // std::cerr << ApproximationBaseNames[dit->getApproxBase()] << std::endl;

    int side_number = (*dit)->sideNumberPtr->side_number;
    if(data[side_number].getDataOrder()) continue;

    ApproximationOrder ent_order = (*dit)->getMaxOrder();
    if(side_number < 0) {
      SETERRQ(PETSC_COMM_SELF,MOFEM_DATA_INCONSISTENCY,"data inconsistency");
    }
    data[side_number].getBase() = (*dit)->getApproxBase();
    data[side_number].getSpace() = (*dit)->getSpace();
    data[side_number].getDataOrder() = data[side_number].getDataOrder() > ent_order ? data[side_number].getDataOrder() : ent_order;
    if((*dit)->sideNumberPtr->brother_side_number!=-1) {
      if(data.size() < (unsigned int)(*dit)->sideNumberPtr->brother_side_number) {
        SETERRQ(PETSC_COMM_SELF,MOFEM_DATA_INCONSISTENCY,"data inconsistency");
      }
      data[(*dit)->sideNumberPtr->brother_side_number].getBase() = data[side_number].getBase();
      data[(*dit)->sideNumberPtr->brother_side_number].getSpace() = data[side_number].getSpace();
      data[(*dit)->sideNumberPtr->brother_side_number].getDataOrder() = data[side_number].getDataOrder();
    }

    const int nb_dofs_on_ent = (*dit)->getNbDofsOnEnt();
    for(int i = 0;i!=nb_dofs_on_ent;i++,dit++) {}

  }

  PetscFunctionReturn(0);
}

getEdgesColIndices()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getEdgesColIndices	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

get Edges col indices from FENumeredDofEntity_multiIndex

Definition at line 530 of file ForcesAndSourcesCore.cpp.

                                                                                                                        {

  PetscFunctionBegin;
  ierr = getTypeIndices(
    field_name,const_cast<FENumeredDofEntity_multiIndex&>(numeredEntFiniteElementPtr->getColsDofs()),MBEDGE,data.dataOnEntities[MBEDGE]
  ); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getEdgesDataOrder()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getEdgesDataOrder	(	DataForcesAndSourcesCore &	data,
		const FieldSpace	space
	)		const

Definition at line 220 of file ForcesAndSourcesCore.cpp.

                                                                                                                  {

  PetscFunctionBegin;
  ierr = getDataOrder(MBEDGE,space,data.dataOnEntities[MBEDGE]); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getEdgesDataOrderSpaceAndBase()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getEdgesDataOrderSpaceAndBase	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

Definition at line 317 of file ForcesAndSourcesCore.cpp.

                                                                                                                                   {

  PetscFunctionBegin;
  ierr = getDataOrderSpaceAndBase(field_name,MBEDGE,data.dataOnEntities[MBEDGE]); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getEdgesFieldData()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getEdgesFieldData	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

Definition at line 1000 of file ForcesAndSourcesCore.cpp.

                                                                                                                       {

  PetscFunctionBegin;
  ierr = getTypeFieldData(
    field_name,const_cast<FEDofEntity_multiIndex&>(numeredEntFiniteElementPtr->getDataDofs()),MBEDGE,data.dataOnEntities[MBEDGE]
  ); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getEdgesRowIndices()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getEdgesRowIndices	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

get Edges row indices from FENumeredDofEntity_multiIndex

Definition at line 521 of file ForcesAndSourcesCore.cpp.

                                                                                                                        {

  PetscFunctionBegin;
  ierr = getTypeIndices(
    field_name,const_cast<FENumeredDofEntity_multiIndex&>(numeredEntFiniteElementPtr->getRowsDofs()),MBEDGE,data.dataOnEntities[MBEDGE]
  ); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getEdgesSense()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getEdgesSense

(

DataForcesAndSourcesCore &

data

)

const

get edge sense )orientation) in respect finite element entity

Parameters

data	structure where results are stored

Returns

error code

Definition at line 126 of file ForcesAndSourcesCore.cpp.

                                                                                       {

  PetscFunctionBegin;
  ierr = getSense(MBEDGE,data.dataOnEntities[MBEDGE]); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getFaceTriNodes()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getFaceTriNodes

(

DataForcesAndSourcesCore &

data

)

const

Get nodes on triangles.

Definition at line 1066 of file ForcesAndSourcesCore.cpp.

                                                                                         {
  //
  PetscFunctionBegin;
  //PetscAttachDebugger();
  data.facesNodes.resize(4,3,false);
  SideNumber_multiIndex& side_table = const_cast<SideNumber_multiIndex&>(numeredEntFiniteElementPtr->getSideNumberTable());
  SideNumber_multiIndex::nth_index<1>::type::iterator siit = side_table.get<1>().lower_bound(boost::make_tuple(MBTRI,0));
  SideNumber_multiIndex::nth_index<1>::type::iterator hi_siit = side_table.get<1>().upper_bound(boost::make_tuple(MBTRI,4));
  if(distance(siit,hi_siit)!=4) {
    SETERRQ(PETSC_COMM_SELF,MOFEM_DATA_INCONSISTENCY,"Should be 4 triangles on tet, side_table not initialized");
  }
  const int cannonical_face_sense_p1[4][3] = { {0,1,3}, {1,2,3}, {0,3,2}/**/, {0,2,1}/**/ }; //secon index is offset (positive sense)
  const int cannonical_face_sense_m1[4][3] = { {0,3,1}, {1,3,2}, {0,2,3}, {0,1,2} }; //second index is offset (negative sense
  for(;siit!=hi_siit;siit++) {
    const boost::shared_ptr<SideNumber> side = *siit;
    int face_conn[3] = {-1,-1,-1};
    if(side->offset == 0) {
      face_conn[0] = side->sense == 1 ? cannonical_face_sense_p1[(int)side->side_number][0] : cannonical_face_sense_m1[(int)side->side_number][0];
      face_conn[1] = side->sense == 1 ? cannonical_face_sense_p1[(int)side->side_number][1] : cannonical_face_sense_m1[(int)side->side_number][1];
      face_conn[2] = side->sense == 1 ? cannonical_face_sense_p1[(int)side->side_number][2] : cannonical_face_sense_m1[(int)side->side_number][2];
    }
    if(side->offset == 1) {
      face_conn[0] = side->sense == 1 ? cannonical_face_sense_p1[(int)side->side_number][1] : cannonical_face_sense_m1[(int)side->side_number][2]/**/;
      face_conn[1] = side->sense == 1 ? cannonical_face_sense_p1[(int)side->side_number][2] : cannonical_face_sense_m1[(int)side->side_number][0];
      face_conn[2] = side->sense == 1 ? cannonical_face_sense_p1[(int)side->side_number][0] : cannonical_face_sense_m1[(int)side->side_number][1];
    }
    if(side->offset == 2) {
      face_conn[0] = side->sense == 1 ? cannonical_face_sense_p1[(int)side->side_number][2] : cannonical_face_sense_m1[(int)side->side_number][1]/**/;
      face_conn[1] = side->sense == 1 ? cannonical_face_sense_p1[(int)side->side_number][0] : cannonical_face_sense_m1[(int)side->side_number][2];
      face_conn[2] = side->sense == 1 ? cannonical_face_sense_p1[(int)side->side_number][1] : cannonical_face_sense_m1[(int)side->side_number][0];
    }
    for(int nn = 0;nn<3;nn++) data.facesNodes(side->side_number,nn) = face_conn[nn];
    {
      const EntityHandle *conn_tet;
      int num_nodes_tet;
      EntityHandle ent = numeredEntFiniteElementPtr->getEnt();
      rval = mField.get_moab().get_connectivity(ent,conn_tet,num_nodes_tet,true); CHKERRQ_MOAB(rval);
      if(num_nodes_tet != 4) SETERRQ(PETSC_COMM_SELF,MOFEM_DATA_INCONSISTENCY,"data inconsistency");
      int num_nodes_face;
      const EntityHandle *conn_face;
      rval = mField.get_moab().get_connectivity(side->ent,conn_face,num_nodes_face,true); CHKERRQ_MOAB(rval);
      if(num_nodes_face != 3) SETERRQ(PETSC_COMM_SELF,1,"data inconsistency");
      if(conn_face[0] != conn_tet[data.facesNodes(side->side_number,0)])
        SETERRQ(PETSC_COMM_SELF,MOFEM_DATA_INCONSISTENCY,"data inconsistency");
      if(conn_face[1] != conn_tet[data.facesNodes(side->side_number,1)])
        SETERRQ(PETSC_COMM_SELF,MOFEM_DATA_INCONSISTENCY,"data inconsistency");
      if(conn_face[2] != conn_tet[data.facesNodes(side->side_number,2)])
        SETERRQ(PETSC_COMM_SELF,MOFEM_DATA_INCONSISTENCY,"data inconsistency");
    }
  }
  PetscFunctionReturn(0);
}

getMaxColOrder()

int MoFEM::ForcesAndSourcesCore::getMaxColOrder

(

)

const

Get max order of approximation for field in columns.

Definition at line 173 of file ForcesAndSourcesCore.cpp.

                                               {
  return getMaxOrder(numeredEntFiniteElementPtr->getColsDofs());
}

getMaxDataOrder()

int MoFEM::ForcesAndSourcesCore::getMaxDataOrder

(

)

const

Get max order of approximation for data fields.

Method getMaxDataOrder () return maximal order on entities, for all data on the element. So for example if finite element is triangle, and triangle base function have order 4 and on edges base function have order 2, this function return 4.

If finite element has for example 2 or more approximated fields, for example Pressure (order 3) and displacement field (order 5), this function returns 5.

Definition at line 165 of file ForcesAndSourcesCore.cpp.

                                                {
  return getMaxOrder(numeredEntFiniteElementPtr->getDataDofs());
}

getMaxRowOrder()

int MoFEM::ForcesAndSourcesCore::getMaxRowOrder

(

)

const

Get max order of approximation for field in rows.

Definition at line 169 of file ForcesAndSourcesCore.cpp.

                                               {
  return getMaxOrder(numeredEntFiniteElementPtr->getRowsDofs());
}

getNodesFieldData() [1/2]

PetscErrorCode MoFEM::ForcesAndSourcesCore::getNodesFieldData	(	const boost::string_ref	field_name,
		FEDofEntity_multiIndex &	dofs,
		VectorDouble &	nodes_data,
		VectorDofs &	nodes_dofs,
		FieldSpace &	space,
		FieldApproximationBase &	base
	)		const

Get field data on nodes.

Parameters

field_name	Name of field
dofs	Dofs (element) multi index
nodes_data	Returned DOFs values
nodes_dofs	Vector of pointers to DOFs data structure
space	Get space on nodes (Only H! is valid)
base	Get base on nodes

Returns

Error code

Definition at line 774 of file ForcesAndSourcesCore.cpp.

        {

  PetscFunctionBegin;
  try {
    FEDofEntityByNameAndType::iterator dit,hi_dit,it;
    dit = dofs.get<Composite_Name_And_Type_mi_tag>().lower_bound(boost::make_tuple(field_name,MBVERTEX));
    hi_dit = dofs.get<Composite_Name_And_Type_mi_tag>().upper_bound(boost::make_tuple(field_name,MBVERTEX));

    int num_nodes;
    ierr = getNumberOfNodes(num_nodes); CHKERRQ(ierr);
    int max_nb_dofs = 0;
    if(dit!=hi_dit) {
      max_nb_dofs = (*dit)->getNbOfCoeffs()*num_nodes;
    }

    if(distance(dit,hi_dit)!=max_nb_dofs) {
      nodes_data.resize(max_nb_dofs,false);
      nodes_data.clear();
      nodes_dofs.resize(max_nb_dofs,false);
    } else {
      int size = distance(dit,hi_dit);
      nodes_data.resize(size,false);
      nodes_dofs.resize(size,false);
    }

    if(dit!=hi_dit) {
      space = (*dit)->getSpace();
      base = (*dit)->getApproxBase();
    }

    for(;dit!=hi_dit;dit++) {
      FieldData val = (*dit)->getFieldData();
      int side_number = (*dit)->sideNumberPtr->side_number;
      if(side_number == -1) {
        SETERRQ(PETSC_COMM_SELF,MOFEM_DATA_INCONSISTENCY,"data inconsistency");
      }
      int pos = side_number*(*dit)->getNbOfCoeffs()+(*dit)->getDofCoeffIdx();
      nodes_data[pos] = val;
      nodes_dofs[pos] = *dit;
      int  brother_side_number = (*dit)->sideNumberPtr->brother_side_number;
      if(brother_side_number!=-1) {
        if(nodes_data.size()<(unsigned int)(brother_side_number*(*dit)->getNbOfCoeffs()+(*dit)->getNbOfCoeffs())) {
          nodes_data.resize(brother_side_number*(*dit)->getNbOfCoeffs()+(*dit)->getNbOfCoeffs());
          nodes_dofs.resize(brother_side_number*(*dit)->getNbOfCoeffs()+(*dit)->getNbOfCoeffs());
        }
        int brother_pos = brother_side_number*(*dit)->getNbOfCoeffs()+(*dit)->getDofCoeffIdx();
        nodes_data[brother_pos] = val;
        nodes_dofs[brother_pos] = *dit;
      }
    }

  } catch (std::exception& ex) {
    std::ostringstream ss;
    ss << "thorw in method: " << ex.what() << " at line " << __LINE__ << " in file " << __FILE__;
    SETERRQ(PETSC_COMM_SELF,MOFEM_STD_EXCEPTION_THROW,ss.str().c_str());
  }
  PetscFunctionReturn(0);
}

getNodesFieldData() [2/2]

PetscErrorCode MoFEM::ForcesAndSourcesCore::getNodesFieldData	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

Get data on nodes.

Parameters

data	Data structure
field_name	Field name

Returns

Error code

Definition at line 840 of file ForcesAndSourcesCore.cpp.

                                                                                                                       {
  PetscFunctionBegin;

  ierr = getNodesFieldData(
    field_name,
    const_cast<FEDofEntity_multiIndex&>(numeredEntFiniteElementPtr->getDataDofs()),
    data.dataOnEntities[MBVERTEX][0].getFieldData(),
    data.dataOnEntities[MBVERTEX][0].getFieldDofs(),
    data.dataOnEntities[MBVERTEX][0].getSpace(),
    data.dataOnEntities[MBVERTEX][0].getBase()
  ); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getNodesIndices()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getNodesIndices	(	const boost::string_ref	field_name,
		FENumeredDofEntity_multiIndex &	dofs,
		VectorInt &	nodes_indices,
		VectorInt &	local_nodes_indices
	)		const

get node indices

Definition at line 354 of file ForcesAndSourcesCore.cpp.

        {

  PetscFunctionBegin;

  FENumeredDofEntityByNameAndType::iterator dit,hi_dit,it;
  dit = dofs.get<Composite_Name_And_Type_mi_tag>().lower_bound(boost::make_tuple(field_name,MBVERTEX));
  hi_dit = dofs.get<Composite_Name_And_Type_mi_tag>().upper_bound(boost::make_tuple(field_name,MBVERTEX));

  int num_nodes;
  ierr = getNumberOfNodes(num_nodes); CHKERRQ(ierr);
  int max_nb_dofs = 0;
  if(dit!=hi_dit) {
    max_nb_dofs = (*dit)->getNbOfCoeffs()*num_nodes;
  }

  if(distance(dit,hi_dit)!=max_nb_dofs) {
    nodes_indices.resize(max_nb_dofs,false);
    local_nodes_indices.resize(max_nb_dofs,false);
    for(int dd = 0;dd<max_nb_dofs;dd++) {
      nodes_indices[dd] = -1;
      local_nodes_indices[dd] = -1;
    }
  } else {
    nodes_indices.resize(distance(dit,hi_dit),false);
    local_nodes_indices.resize(distance(dit,hi_dit),false);
  }

  for(;dit!=hi_dit;dit++) {
    const int idx = (*dit)->getPetscGlobalDofIdx();
    const int local_idx = (*dit)->getPetscLocalDofIdx();
    const int side_number = (*dit)->sideNumberPtr->side_number;
    const int pos = side_number*(*dit)->getNbOfCoeffs()+(*dit)->getDofCoeffIdx();
    nodes_indices[pos] = idx;
    local_nodes_indices[pos] = local_idx;
    const int  brother_side_number = (*dit)->sideNumberPtr->brother_side_number;
    if(brother_side_number!=-1) {
      if(nodes_indices.size()<(unsigned int)(brother_side_number*(*dit)->getNbOfCoeffs()+(*dit)->getNbOfCoeffs())) {
        nodes_indices.resize(brother_side_number*(*dit)->getNbOfCoeffs()+(*dit)->getNbOfCoeffs());
      }
      const int elem_idx = brother_side_number*(*dit)->getNbOfCoeffs()+(*dit)->getDofCoeffIdx();
      nodes_indices[elem_idx] = idx;
      local_nodes_indices[elem_idx] = local_idx;
    }
  }

  PetscFunctionReturn(0);
}

getNoFieldColIndices()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getNoFieldColIndices	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

get col NoField indices

Definition at line 654 of file ForcesAndSourcesCore.cpp.

                                                                                                                          {

  PetscFunctionBegin;
  if(data.dataOnEntities[MBENTITYSET].size() == 0) {
    SETERRQ(PETSC_COMM_SELF,MOFEM_DATA_INCONSISTENCY,"data inconsistency");
  }
  ierr = getNoFieldIndices(
    field_name,const_cast<FENumeredDofEntity_multiIndex&>(numeredEntFiniteElementPtr->getColsDofs()),data.dataOnEntities[MBENTITYSET][0].getIndices()
  ); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getNoFieldFieldData() [1/2]

PetscErrorCode MoFEM::ForcesAndSourcesCore::getNoFieldFieldData	(	const boost::string_ref	field_name,
		FEDofEntity_multiIndex &	dofs,
		VectorDouble &	ent_field_data,
		VectorDofs &	ent_field_dofs
	)		const

Definition at line 962 of file ForcesAndSourcesCore.cpp.

        {
  //
  PetscFunctionBegin;
  FEDofEntityByFieldName::iterator dit,hi_dit;
  dit = dofs.get<FieldName_mi_tag>().lower_bound(field_name);
  hi_dit = dofs.get<FieldName_mi_tag>().upper_bound(field_name);
  int size = distance(dit,hi_dit);
  ent_field_data.resize(size,false);
  ent_field_dofs.resize(size,false);
  for(;dit!=hi_dit;dit++) {
    int idx = (*dit)->getDofCoeffIdx();
    ent_field_data[idx] = (*dit)->getFieldData();
    ent_field_dofs[idx] = *dit;
  }
  PetscFunctionReturn(0);
}

getNoFieldFieldData() [2/2]

PetscErrorCode MoFEM::ForcesAndSourcesCore::getNoFieldFieldData	(	DataForcesAndSourcesCore &	data,
		const boost::string_ref	field_name
	)		const

Definition at line 984 of file ForcesAndSourcesCore.cpp.

        {

  PetscFunctionBegin;
  if(data.dataOnEntities[MBENTITYSET].size() == 0) {
    SETERRQ(PETSC_COMM_SELF,MOFEM_DATA_INCONSISTENCY,"data inconsistency");
  }
  ierr = getNoFieldFieldData(
    field_name,const_cast<FEDofEntity_multiIndex&>(numeredEntFiniteElementPtr->getDataDofs()),
    data.dataOnEntities[MBENTITYSET][0].getFieldData(),
    data.dataOnEntities[MBENTITYSET][0].getFieldDofs()
  ); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getNoFieldIndices()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getNoFieldIndices	(	const std::string &	field_name,
		FENumeredDofEntity_multiIndex &	dofs,
		VectorInt &	nodes_indices
	)		const

get NoField indices

Definition at line 625 of file ForcesAndSourcesCore.cpp.

        {
  //
  PetscFunctionBegin;
  FENumeredDofEntityByFieldName::iterator dit,hi_dit;
  dit = dofs.get<FieldName_mi_tag>().lower_bound(field_name);
  hi_dit = dofs.get<FieldName_mi_tag>().upper_bound(field_name);
  indices.resize(distance(dit,hi_dit));
  for(;dit!=hi_dit;dit++) {
    int idx = (*dit)->getPetscGlobalDofIdx();
    indices[(*dit)->getDofCoeffIdx()] = idx;
  }
  PetscFunctionReturn(0);
}

getNoFieldRowIndices()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getNoFieldRowIndices	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

get col NoField indices

Definition at line 641 of file ForcesAndSourcesCore.cpp.

                                                                                                                          {

  PetscFunctionBegin;
  //EntityType fe_type = numeredEntFiniteElementPtr->getEntType();
  if(data.dataOnEntities[MBENTITYSET].size() == 0) {
    SETERRQ(PETSC_COMM_SELF,MOFEM_DATA_INCONSISTENCY,"data inconsistency");
  }
  ierr = getNoFieldIndices(
    field_name,const_cast<FENumeredDofEntity_multiIndex&>(numeredEntFiniteElementPtr->getRowsDofs()),data.dataOnEntities[MBENTITYSET][0].getIndices()
  ); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getNumberOfNodes()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getNumberOfNodes

(

int &

num_nodes

)

const

Definition at line 69 of file ForcesAndSourcesCore.cpp.

                                                                          {
  PetscFunctionBegin;

  EntityHandle ent = numeredEntFiniteElementPtr->getEnt();
  switch(mField.get_moab().type_from_handle(ent)) {
    case MBVERTEX:
    num_nodes = 1;
    break;
    case MBEDGE:
    num_nodes = 2;
    break;
    case MBTRI:
    num_nodes = 3;
    break;
    case MBTET:
    num_nodes = 4;
    break;
    case MBPRISM:
    num_nodes = 6;
    break;
    default:
    SETERRQ(PETSC_COMM_SELF,MOFEM_NOT_IMPLEMENTED,"not implemented");
  }

  PetscFunctionReturn(0);
}

getOpPtrVector()

boost::ptr_vector<UserDataOperator>& MoFEM::ForcesAndSourcesCore::getOpPtrVector

(

)

Use to push back operator for row operator.

It can be used to calculate nodal forces or other quantities on the mesh.

Examples:

cell_forces.cpp, elasticity.cpp, and MagneticElement.hpp.

Definition at line 566 of file ForcesAndSourcesCore.hpp.

{ return opPtrVector; }

getPrismColIndices()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getPrismColIndices	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

get Prism col indices from FENumeredDofEntity_multiIndex

Definition at line 616 of file ForcesAndSourcesCore.cpp.

                                                                                                                        {

  PetscFunctionBegin;
  ierr = getTypeIndices(
    field_name,const_cast<FENumeredDofEntity_multiIndex&>(numeredEntFiniteElementPtr->getColsDofs()),MBPRISM,data.dataOnEntities[MBPRISM]
  ); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getPrismDataOrder()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getPrismDataOrder	(	DataForcesAndSourcesCore &	data,
		const FieldSpace	space
	)		const

Definition at line 248 of file ForcesAndSourcesCore.cpp.

                                                                                                                  {

  PetscFunctionBegin;
  ierr = getDataOrder(MBPRISM,space,data.dataOnEntities[MBPRISM]); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getPrismDataOrderSpaceAndBase()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getPrismDataOrderSpaceAndBase	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

Definition at line 345 of file ForcesAndSourcesCore.cpp.

                                                                                                                                   {

  PetscFunctionBegin;
  ierr = getDataOrderSpaceAndBase(field_name,MBPRISM,data.dataOnEntities[MBPRISM]); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getPrismFieldData()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getPrismFieldData	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

Definition at line 1047 of file ForcesAndSourcesCore.cpp.

                                                                                                                       {

  PetscFunctionBegin;
  if(data.dataOnEntities[MBPRISM].size() == 0) {
    SETERRQ(PETSC_COMM_SELF,MOFEM_DATA_INCONSISTENCY,"data inconsistency");
  }
  ierr = getTypeFieldData(
    field_name,
    const_cast<FEDofEntity_multiIndex&>(numeredEntFiniteElementPtr->getDataDofs()),
    MBPRISM,
    0,
    data.dataOnEntities[MBPRISM][0].getFieldData(),
    data.dataOnEntities[MBPRISM][0].getFieldDofs()
  ); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getPrismRowIndices()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getPrismRowIndices	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

get Prism row indices from FENumeredDofEntity_multiIndex

Definition at line 605 of file ForcesAndSourcesCore.cpp.

        {

  PetscFunctionBegin;
  ierr = getTypeIndices(
    field_name,const_cast<FENumeredDofEntity_multiIndex&>(numeredEntFiniteElementPtr->getRowsDofs()),MBPRISM,data.dataOnEntities[MBPRISM]
  ); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getProblemNodesColIndices()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getProblemNodesColIndices	(	const std::string &	field_name,
		VectorInt &	nodes_indices
	)		const

Definition at line 758 of file ForcesAndSourcesCore.cpp.

                                                                                                                         {
  PetscFunctionBegin;

  ierr = getProblemNodesIndices(field_name,*(problemPtr->numeredDofsCols),nodes_indices); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getProblemNodesIndices()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getProblemNodesIndices	(	const std::string &	field_name,
		const NumeredDofEntity_multiIndex &	dofs,
		VectorInt &	nodes_indices
	)		const

get indices of nodal indices which are declared for problem but not this particular element

Definition at line 668 of file ForcesAndSourcesCore.cpp.

        {
  PetscFunctionBegin;

  nodes_indices.resize(0);

  SideNumber_multiIndex& side_table = const_cast<SideNumber_multiIndex&>(numeredEntFiniteElementPtr->getSideNumberTable());
  SideNumber_multiIndex::nth_index<1>::type::iterator siit = side_table.get<1>().lower_bound(boost::make_tuple(MBVERTEX,0));
  SideNumber_multiIndex::nth_index<1>::type::iterator hi_siit = side_table.get<1>().lower_bound(boost::make_tuple(MBVERTEX,10000));

  int nn = 0;
  for(;siit!=hi_siit;siit++,nn++) {

    if(siit->get()->side_number == -1) continue;

    const EntityHandle ent = siit->get()->ent;
    NumeredDofEntity_multiIndex::index<Composite_Name_And_Ent_And_EntDofIdx_mi_tag>::type::iterator dit,hi_dit;
    dit = dofs.get<Composite_Name_And_Ent_And_EntDofIdx_mi_tag>().lower_bound(boost::make_tuple(field_name,ent,0));
    hi_dit = dofs.get<Composite_Name_And_Ent_And_EntDofIdx_mi_tag>().upper_bound(boost::make_tuple(field_name,ent,10000));  /// very large number

    if(dit!=hi_dit) {

      if(!nn) {
        nodes_indices.resize((*dit)->getNbOfCoeffs()*distance(siit,hi_siit));
      }
      for(;dit!=hi_dit;dit++) {
        nodes_indices[siit->get()->side_number*(*dit)->getNbOfCoeffs()+(*dit)->getDofCoeffIdx()] = (*dit)->getPetscGlobalDofIdx();
      }

    }

  }

  PetscFunctionReturn(0);

}

getProblemNodesRowIndices()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getProblemNodesRowIndices	(	const std::string &	field_name,
		VectorInt &	nodes_indices
	)		const

Definition at line 744 of file ForcesAndSourcesCore.cpp.

                                                                                                                         {
  PetscFunctionBegin;

  ierr = getProblemNodesIndices(field_name,*(problemPtr->numeredDofsRows),nodes_indices); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getProblemTypeColIndices()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getProblemTypeColIndices	(	const std::string &	field_name,
		EntityType	type,
		int	side_number,
		VectorInt &	indices
	)		const

Definition at line 765 of file ForcesAndSourcesCore.cpp.

                                                                                                                                                  {
  PetscFunctionBegin;

  ierr = getProblemTypeIndices(field_name,*(problemPtr->numeredDofsCols),type,side_number,indices); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getProblemTypeIndices()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getProblemTypeIndices	(	const std::string &	field_name,
		const NumeredDofEntity_multiIndex &	dofs,
		EntityType	type,
		int	side_number,
		VectorInt &	indices
	)		const

get indices by type (generic function) which are declared for problem but not this particular element

Definition at line 708 of file ForcesAndSourcesCore.cpp.

        {
  PetscFunctionBegin;

  indices.resize(0);

  SideNumber_multiIndex& side_table =
  const_cast<SideNumber_multiIndex&>(numeredEntFiniteElementPtr->getSideNumberTable());
  SideNumber_multiIndex::nth_index<1>::type::iterator siit =
  side_table.get<1>().lower_bound(boost::make_tuple(type,side_number));
  SideNumber_multiIndex::nth_index<1>::type::iterator hi_siit =
  side_table.get<1>().upper_bound(boost::make_tuple(type,side_number));

  for(;siit!=hi_siit;siit++) {

    if(siit->get()->side_number == -1) continue;

    const EntityHandle ent = siit->get()->ent;
    NumeredDofEntity_multiIndex::index<Composite_Name_And_Ent_And_EntDofIdx_mi_tag>::type::iterator dit,hi_dit;
    dit = dofs.get<Composite_Name_And_Ent_And_EntDofIdx_mi_tag>().lower_bound(boost::make_tuple(field_name,ent,0));
    hi_dit = dofs.get<Composite_Name_And_Ent_And_EntDofIdx_mi_tag>().upper_bound(boost::make_tuple(field_name,ent,10000));  /// very large number

    indices.resize(distance(dit,hi_dit));
    for(;dit!=hi_dit;dit++) {

      indices[(*dit)->getEntDofIdx()] = (*dit)->getPetscGlobalDofIdx();

    }

  }

  PetscFunctionReturn(0);
}

getProblemTypeRowIndices()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getProblemTypeRowIndices	(	const std::string &	field_name,
		EntityType	type,
		int	side_number,
		VectorInt &	indices
	)		const

Definition at line 751 of file ForcesAndSourcesCore.cpp.

                                                                                                                                                  {
  PetscFunctionBegin;

  ierr = getProblemTypeIndices(field_name,*(problemPtr->numeredDofsRows),type,side_number,indices); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getQuadColIndices()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getQuadColIndices	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

get Quad col indices from FENumeredDofEntity_multiIndex

Definition at line 596 of file ForcesAndSourcesCore.cpp.

                                                                                                                       {

  PetscFunctionBegin;
  ierr = getTypeIndices(
    field_name,const_cast<FENumeredDofEntity_multiIndex&>(numeredEntFiniteElementPtr->getColsDofs()),MBQUAD,data.dataOnEntities[MBQUAD]
  ); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getQuadDataOrder()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getQuadDataOrder	(	DataForcesAndSourcesCore &	data,
		const FieldSpace	space
	)		const

Definition at line 234 of file ForcesAndSourcesCore.cpp.

                                                                                                                 {

  PetscFunctionBegin;
  ierr = getDataOrder(MBQUAD,space,data.dataOnEntities[MBQUAD]); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getQuadDataOrderSpaceAndBase()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getQuadDataOrderSpaceAndBase	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

Definition at line 331 of file ForcesAndSourcesCore.cpp.

                                                                                                                                  {

  PetscFunctionBegin;
  ierr = getDataOrderSpaceAndBase(field_name,MBQUAD,data.dataOnEntities[MBQUAD]); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getQuadFieldData()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getQuadFieldData	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

Definition at line 1020 of file ForcesAndSourcesCore.cpp.

        {

  PetscFunctionBegin;
  ierr = getTypeFieldData(
    field_name,const_cast<FEDofEntity_multiIndex&>(numeredEntFiniteElementPtr->getDataDofs()),MBQUAD,data.dataOnEntities[MBQUAD]
  ); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getQuadRowIndices()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getQuadRowIndices	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

get Quad row indices from FENumeredDofEntity_multiIndex

Definition at line 585 of file ForcesAndSourcesCore.cpp.

        {

  PetscFunctionBegin;
  ierr = getTypeIndices(
    field_name,const_cast<FENumeredDofEntity_multiIndex&>(numeredEntFiniteElementPtr->getRowsDofs()),MBQUAD,data.dataOnEntities[MBQUAD]
  ); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getQuadSense()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getQuadSense

(

DataForcesAndSourcesCore &

data

)

const

Definition at line 140 of file ForcesAndSourcesCore.cpp.

                                                                                      {

  PetscFunctionBegin;
  ierr = getSense(MBQUAD,data.dataOnEntities[MBQUAD]); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getRowNodesIndices()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getRowNodesIndices	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

get row node indices from FENumeredDofEntity_multiIndex

Definition at line 404 of file ForcesAndSourcesCore.cpp.

                                                                                                                        {

  PetscFunctionBegin;
  ierr = getNodesIndices(
    field_name,const_cast<FENumeredDofEntity_multiIndex&>(numeredEntFiniteElementPtr->getRowsDofs()),
    data.dataOnEntities[MBVERTEX][0].getIndices(),data.dataOnEntities[MBVERTEX][0].getLocalIndices()
  ); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getRule() [1/2]

virtual int MoFEM::ForcesAndSourcesCore::getRule ( int  order )

virtual

set integration rule for finite element

This function is overloaded by the user. The integration rule is set such that specific operator implemented by the user is integrated accurately. For example if user implement bilinear operator

\[ b(u,v) = \int_\mathcal{T} \frac{\partial u_i}{\partial x_j}\frac{\partial v_i}{\partial x_j} \textrm{d}\mathcal{T} \]

then if \(u\) and \(v\) are polynomial of given order, then exact integral would be

int getRule(int order) { return 2*(order-1); };

The integration points and weights are set appropriately for given entity type and integration rule from quad.c

Method ForcesAndSourcesCore::getRule takes at argument takes maximal polynomial order set on the element on all fields defined on the element. If a user likes to have more control, another variant of this function can be called which distinguishing between field orders on rows, columns and data, the i.e. first argument of a bilinear form, the second argument of bilinear form and field coefficents on the element.

Note

If user set rule to -1 or any other negative integer, then method ForcesAndSourcesCore::setGaussPts is called. In that method user can implement own (specific) integration method.

Bug:

this function should be const

Reimplemented in PostProcFaceOnRefinedMesh, BoneRemodeling::DensityMapFe, MoFEM::VolumeElementForcesAndSourcesCoreOnSide, GelModule::Gel::GelFE, SmallStrainPlasticity::MyVolumeFE, PostProcTemplateVolumeOnRefinedMesh< MoFEM::VolumeElementForcesAndSourcesCore >, KelvinVoigtDamper::DamperFE, NitscheMethod::MyVolumeFE, SurfaceSlidingConstrains::MyTriangleFE, GriffithForceElement::MyTriangleFE, ThermalElement::MyTriFE, MixTransport::MixTransportElement::MyTriFE, NonlinearElasticElement::MyVolumeFE, NeummanForcesSurface::MyTriangleFE, MagneticElement::TriFE, MoFEM::NormElement::MyTriFE, NeummanForcesSurfaceComplexForLazy::MyTriangleSpatialFE, ThermalElement::MyVolumeFE, CellEngineering::FaceElement, MixTransport::MixTransportElement::MyVolumeFE, MoFEM::NormElement::MyVolumeFE, OptimalMassTransport::TriFE, MagneticElement::VolumeFE, BoneRemodeling::Remodeling::Fe, AnalyticalDirichletBC::ApproxField::MyTriFE, AnalyticalDirichletHelmholtzBC::ApproxField::MyTriFE, AnalyticalDirihletBC::ApproxField::MyTriFE, FluidPressure::MyTriangleFE, NitscheMethod::MyFace, OptimalMassTransport::VolumeFE, AnalyticalDirihletBC::ApproxField::MyTriFE, CohesiveElement::CohesiveInterfaceElement::MyPrism, EdgeForce::MyFE, BodyFroceConstantField::MyVolumeFE, ThermalStressElement::MyVolumeFE, TestFE, and CellEngineering::DispMapFe.

Definition at line 309 of file ForcesAndSourcesCore.hpp.

{ return 2*order; }

getRule() [2/2]

virtual int MoFEM::ForcesAndSourcesCore::getRule ( int  order_row, int  order_col, int  order_data  )

virtual

another variant of getRule

Parameters

order_row	order of base function on row
order_col	order of base function on columns
order_data	order of base function approximating data

Returns

integration rule

Bug:

this function should be const

Definition at line 330 of file ForcesAndSourcesCore.hpp.

                                                                  {
    return getRuleHook? getRuleHook(order_row,order_col,order_data) : getRule(order_data);
  }

getSense()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getSense	(	EntityType	type,
		boost::ptr_vector< DataForcesAndSourcesCore::EntData > &	data
	)		const

get sense (orientation) of entity

Parameters

type	type of entity
data	entity data

Returns

error code

Definition at line 98 of file ForcesAndSourcesCore.cpp.

                                                                                                                          {
  PetscFunctionBegin;
  try {
    SideNumber_multiIndex& side_table = const_cast<SideNumber_multiIndex&>(numeredEntFiniteElementPtr->getSideNumberTable());
    if(data.size() < side_table.get<2>().count(type)) {
      // prims has 9 edges, some of edges for "flat" prism are not active
      SETERRQ2(PETSC_COMM_SELF,MOFEM_DATA_INCONSISTENCY,"data inconsistency %u < %u",data.size(),side_table.get<2>().count(type));
    }
    SideNumber_multiIndex::nth_index<2>::type::iterator siit = side_table.get<2>().lower_bound(type);
    SideNumber_multiIndex::nth_index<2>::type::iterator hi_siit = side_table.get<2>().upper_bound(type);
    for(;siit!=hi_siit;siit++) {
      data[siit->get()->side_number].getSense() = siit->get()->sense;
      if(siit->get()->brother_side_number!=-1) {
        if(data.size() < (unsigned)siit->get()->brother_side_number) {
          SETERRQ(PETSC_COMM_SELF,MOFEM_DATA_INCONSISTENCY,"data inconsistency");
        }
        data[siit->get()->brother_side_number].getSense() = siit->get()->sense;
      }
    }
  } catch (std::exception& ex) {
    std::ostringstream ss;
    ss << "thorw in method: " << ex.what() << " at line " << __LINE__ << " in file " << __FILE__;
    SETERRQ(PETSC_COMM_SELF,MOFEM_STD_EXCEPTION_THROW,ss.str().c_str());
  }

  PetscFunctionReturn(0);
}

getSpacesAndBaseOnEntities()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getSpacesAndBaseOnEntities

(

DataForcesAndSourcesCore &

data

)

const

Get field approximation space and base on entities.

Definition at line 1121 of file ForcesAndSourcesCore.cpp.

                                                                                                    {
  //
  PetscFunctionBegin;
  try {
    if(nInTheLoop==0) {
      data.sPace.reset();
      data.bAse.reset();
      for(EntityType t = MBVERTEX;t!=MBMAXTYPE;t++) {
        data.spacesOnEntities[t].reset();
        data.basesOnEntities[t].reset();
      }
    }
    for(_IT_GET_FEDATA_DOFS_FOR_LOOP_(this,dof)) {
      if(dof->get()->getEntDofIdx()!=0) continue;
      // std::cerr << *dof << std::endl;
      // std::cerr << dof->getSpace() << " " << data.sPace.size() << std::endl;
      // std::cerr << dof->getApproxBase() << " " << data.bAse.size() << std::endl;
      const FieldSpace space = dof->get()->getSpace();
      const FieldApproximationBase approx = dof->get()->getApproxBase();
      data.sPace.set(space);
      data.bAse.set(approx);
      const EntityType type = dof->get()->getEntType();
      data.spacesOnEntities[type].set(space);
      data.basesOnEntities[type].set(approx);
      // std::cerr << "approx base " << ApproximationBaseNames[dof->getApproxBase()] << " " << data.basesOnEntities[dof->getEntType()] << std::endl;
    }
  } catch (std::exception& ex) {
    std::ostringstream ss;
    ss << "thorw in method: " << ex.what() << " at line " << __LINE__ << " in file " << __FILE__;
    SETERRQ(PETSC_COMM_SELF,MOFEM_STD_EXCEPTION_THROW,ss.str().c_str());
  }
  PetscFunctionReturn(0);
}

getTetDataOrder()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getTetDataOrder	(	DataForcesAndSourcesCore &	data,
		const FieldSpace	space
	)		const

Definition at line 241 of file ForcesAndSourcesCore.cpp.

                                                                                                                {

  PetscFunctionBegin;
  ierr = getDataOrder(MBTET,space,data.dataOnEntities[MBTET]); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getTetDataOrderSpaceAndBase()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getTetDataOrderSpaceAndBase	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

Definition at line 338 of file ForcesAndSourcesCore.cpp.

                                                                                                                                 {

  PetscFunctionBegin;
  ierr = getDataOrderSpaceAndBase(field_name,MBTET,data.dataOnEntities[MBTET]); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getTetsColIndices()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getTetsColIndices	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

get Tets col indices from FENumeredDofEntity_multiIndex

Definition at line 572 of file ForcesAndSourcesCore.cpp.

                                                                                                                       {

  PetscFunctionBegin;
  if(data.dataOnEntities[MBTET].size() == 0) {
    SETERRQ(PETSC_COMM_SELF,MOFEM_DATA_INCONSISTENCY,"data inconsistency");
  }
  ierr = getTypeIndices(
    field_name,const_cast<FENumeredDofEntity_multiIndex&>(
      numeredEntFiniteElementPtr->getColsDofs()),MBTET,0,data.dataOnEntities[MBTET][0].getIndices(),data.dataOnEntities[MBTET][0].getLocalIndices()
  ); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getTetsFieldData()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getTetsFieldData	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

Definition at line 1031 of file ForcesAndSourcesCore.cpp.

                                                                                                                      {

  PetscFunctionBegin;
  if(data.dataOnEntities[MBTET].size() == 0) {
    SETERRQ(PETSC_COMM_SELF,MOFEM_DATA_INCONSISTENCY,"data inconsistency");
  }
  ierr = getTypeFieldData(
    field_name,const_cast<FEDofEntity_multiIndex&>(numeredEntFiniteElementPtr->getDataDofs()),
    MBTET,
    0,
    data.dataOnEntities[MBTET][0].getFieldData(),
    data.dataOnEntities[MBTET][0].getFieldDofs()
  ); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getTetsRowIndices()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getTetsRowIndices	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

get Tets row indices from FENumeredDofEntity_multiIndex

Definition at line 559 of file ForcesAndSourcesCore.cpp.

                                                                                                                       {

  PetscFunctionBegin;
  if(data.dataOnEntities[MBTET].size() == 0) {
    SETERRQ(PETSC_COMM_SELF,MOFEM_DATA_INCONSISTENCY,"data inconsistency");
  }
  ierr = getTypeIndices(
    field_name,const_cast<FENumeredDofEntity_multiIndex&>(numeredEntFiniteElementPtr->getRowsDofs()),MBTET,0,
    data.dataOnEntities[MBTET][0].getIndices(),data.dataOnEntities[MBTET][0].getLocalIndices()
  ); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getTrisColIndices()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getTrisColIndices	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

get Tris col indices from FENumeredDofEntity_multiIndex

Definition at line 550 of file ForcesAndSourcesCore.cpp.

                                                                                                                       {

  PetscFunctionBegin;
  ierr = getTypeIndices(
    field_name,const_cast<FENumeredDofEntity_multiIndex&>(numeredEntFiniteElementPtr->getColsDofs()),MBTRI,data.dataOnEntities[MBTRI]
  ); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getTrisDataOrder()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getTrisDataOrder	(	DataForcesAndSourcesCore &	data,
		const FieldSpace	space
	)		const

Definition at line 227 of file ForcesAndSourcesCore.cpp.

                                                                                                                 {

  PetscFunctionBegin;
  ierr = getDataOrder(MBTRI,space,data.dataOnEntities[MBTRI]); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getTrisDataOrderSpaceAndBase()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getTrisDataOrderSpaceAndBase	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

Definition at line 324 of file ForcesAndSourcesCore.cpp.

                                                                                                                                  {

  PetscFunctionBegin;
  ierr = getDataOrderSpaceAndBase(field_name,MBTRI,data.dataOnEntities[MBTRI]); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getTrisFieldData()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getTrisFieldData	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

Definition at line 1009 of file ForcesAndSourcesCore.cpp.

        {

  PetscFunctionBegin;
  ierr = getTypeFieldData(
    field_name,const_cast<FEDofEntity_multiIndex&>(numeredEntFiniteElementPtr->getDataDofs()),MBTRI,data.dataOnEntities[MBTRI]
  ); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getTrisRowIndices()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getTrisRowIndices	(	DataForcesAndSourcesCore &	data,
		const std::string &	field_name
	)		const

get Tris row indices from FENumeredDofEntity_multiIndex

Definition at line 539 of file ForcesAndSourcesCore.cpp.

        {

  PetscFunctionBegin;
  ierr = getTypeIndices(
    field_name,const_cast<FENumeredDofEntity_multiIndex&>(numeredEntFiniteElementPtr->getRowsDofs()),MBTRI,data.dataOnEntities[MBTRI]
  ); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getTrisSense()

PetscErrorCode MoFEM::ForcesAndSourcesCore::getTrisSense

(

DataForcesAndSourcesCore &

data

)

const

get triangle sense (orientation)

Parameters

data	structure where results are stored

Returns

error code

Definition at line 133 of file ForcesAndSourcesCore.cpp.

                                                                                      {

  PetscFunctionBegin;
  ierr = getSense(MBTRI,data.dataOnEntities[MBTRI]); CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

getTypeFieldData() [1/2]

PetscErrorCode MoFEM::ForcesAndSourcesCore::getTypeFieldData	(	const boost::string_ref	field_name,
		FEDofEntity_multiIndex &	dofs,
		EntityType	type,
		int	side_number,
		VectorDouble &	ent_field_data,
		VectorDofs &	ent_field_dofs
	)		const

Get field data on entities.

Parameters

field_name	Field name
dofs	Dofs (element) multi index
type	Entity type
side_number	Side number (Local number of entity on element in canonical order)
ent_field_data	Vector of DOFs values on entities
ent_field_dofs	Vector of pointers to DOFs data structure

Returns

Error code

Definition at line 854 of file ForcesAndSourcesCore.cpp.

        {
  //
  PetscFunctionBegin;
  FEDofEntity_multiIndex::index<Composite_Name_Type_And_Side_Number_mi_tag>::type::iterator dit,hi_dit;
  dit = dofs.get<Composite_Name_Type_And_Side_Number_mi_tag>().lower_bound(boost::make_tuple(field_name,type,side_number));
  if(dit == dofs.get<Composite_Name_Type_And_Side_Number_mi_tag>().end()) {
    ent_field_data.resize(0,false);
    ent_field_dofs.resize(0,false);
    PetscFunctionReturn(0);
  }
  hi_dit = dofs.get<Composite_Name_Type_And_Side_Number_mi_tag>().upper_bound(boost::make_tuple(field_name,type,side_number));
  if(dit!=hi_dit) {
    ent_field_data.resize((*dit)->getNbDofsOnEnt(),false);
    ent_field_dofs.resize((*dit)->getNbDofsOnEnt(),false);
    for(;dit!=hi_dit;dit++) {
      const FieldData val = (*dit)->getFieldData();
      const int idx = (*dit)->getEntDofIdx();
      ent_field_data[idx] = val;
      ent_field_dofs[idx] = *dit;
    }
  } else {
    ent_field_data.resize(0,false);
    ent_field_dofs.resize(0,false);
  }
  PetscFunctionReturn(0);
}

getTypeFieldData() [2/2]

PetscErrorCode MoFEM::ForcesAndSourcesCore::getTypeFieldData	(	const boost::string_ref	field_name,
		FEDofEntity_multiIndex &	dofs,
		EntityType	type,
		boost::ptr_vector< DataForcesAndSourcesCore::EntData > &	data
	)		const

Definition at line 888 of file ForcesAndSourcesCore.cpp.

        {

  PetscFunctionBegin;
  SideNumber_multiIndex& side_table = const_cast<SideNumber_multiIndex&>(numeredEntFiniteElementPtr->getSideNumberTable());
  // if(data.size() < side_table.get<2>().count(type)) {
  //   SETERRQ(PETSC_COMM_SELF,MOFEM_DATA_INCONSISTENCY,"data inconsistency");
  // }
  SideNumber_multiIndex::nth_index<2>::type::iterator siit,hi_siit;
  siit = side_table.get<2>().lower_bound(type);
  hi_siit = side_table.get<2>().upper_bound(type);
  const boost::tuple<const boost::string_ref,EntityType> tuple = boost::make_tuple(field_name,type);
  FEDofEntityByNameAndType::iterator dit,hi_dit;
  dit = dofs.get<Composite_Name_And_Type_mi_tag>().lower_bound(tuple);
  if(dit == dofs.get<Composite_Name_And_Type_mi_tag>().end()) {
    for(
      SideNumber_multiIndex::nth_index<2>::type::iterator
      siiit = siit;siiit!=hi_siit;siiit++
    ) {
      const int side_number = siiit->get()->side_number;
      data[side_number].getFieldData().resize(0,false);
      data[side_number].getFieldDofs().resize(0,false);
    }
    PetscFunctionReturn(0);
  }
  for(
    SideNumber_multiIndex::nth_index<2>::type::iterator
    siiit = siit;siiit!=hi_siit;siiit++
  ) {
    const int side_number = siiit->get()->side_number;
    data[side_number].semaphore = false;
  }
  hi_dit = dofs.get<Composite_Name_And_Type_mi_tag>().upper_bound(tuple);
  for(;dit!=hi_dit;dit++) {
    const int side = dit->get()->sideNumberPtr->side_number;
    const int nb_dofs_on_ent = (*dit)->getNbDofsOnEnt();
    VectorDouble &ent_field_data = data[side].getFieldData();
    VectorDofs &ent_field_dofs = data[side].getFieldDofs();
    if(!data[side].semaphore) {
      data[side].semaphore = true;
      ent_field_data.resize(nb_dofs_on_ent,false);
      ent_field_dofs.resize(nb_dofs_on_ent,false);
    }
    if(!nb_dofs_on_ent) {
      continue;
    }
    const int idx = dit->get()->getEntDofIdx();
    ent_field_data[idx] = dit->get()->getFieldData();
    ent_field_dofs[idx] = *dit;
  }
  for(;siit!=hi_siit;siit++) {
    const int side_number = siit->get()->side_number;
    if(!data[side_number].semaphore) {
      data[side_number].getFieldData().resize(0,false);
      data[side_number].getFieldDofs().resize(0,false);
    }
    if(siit->get()->brother_side_number!=-1) {
      if(data.size() < (unsigned int)siit->get()->brother_side_number) {
        SETERRQ(PETSC_COMM_SELF,MOFEM_DATA_INCONSISTENCY,"data inconsistency");
      }
      ierr = getTypeFieldData(
        field_name,dofs,type,side_number,
        data[siit->get()->brother_side_number].getFieldData(),
        data[siit->get()->brother_side_number].getFieldDofs()
      ); CHKERRQ(ierr);
    }
  }
  PetscFunctionReturn(0);
}

getTypeIndices() [1/2]

PetscErrorCode MoFEM::ForcesAndSourcesCore::getTypeIndices	(	const boost::string_ref	field_name,
		FENumeredDofEntity_multiIndex &	dofs,
		EntityType	type,
		int	side_number,
		VectorInt &	indices,
		VectorInt &	local_indices
	)		const

get indices by type (generic function)

Definition at line 424 of file ForcesAndSourcesCore.cpp.

        {
  //
  PetscFunctionBegin;
  FENumeredDofEntity_multiIndex::index<Composite_Name_Type_And_Side_Number_mi_tag>::type::iterator dit,hi_dit;
  dit = dofs.get<Composite_Name_Type_And_Side_Number_mi_tag>().lower_bound(boost::make_tuple(field_name,type,side_number));
  if(dit==dofs.get<Composite_Name_Type_And_Side_Number_mi_tag>().end()) {
    indices.resize(0);
    local_indices.resize(0);
    PetscFunctionReturn(0);
  }
  hi_dit = dofs.get<Composite_Name_Type_And_Side_Number_mi_tag>().upper_bound(boost::make_tuple(field_name,type,side_number));
  if(dit!=hi_dit) {
    indices.resize((*dit)->getNbDofsOnEnt(),false);
    local_indices.resize((*dit)->getNbDofsOnEnt(),false);
    for(;dit!=hi_dit;dit++) {
      int idx = (*dit)->getPetscGlobalDofIdx();
      int elemem_idx = (*dit)->getEntDofIdx();
      indices[elemem_idx] = idx;
      int local_idx = (*dit)->getPetscLocalDofIdx();
      local_indices[elemem_idx] = local_idx;
    }
  } else {
    indices.resize(0);
    local_indices.resize(0);
  }
  PetscFunctionReturn(0);
}

getTypeIndices() [2/2]

PetscErrorCode MoFEM::ForcesAndSourcesCore::getTypeIndices	(	const boost::string_ref	field_name,
		FENumeredDofEntity_multiIndex &	dofs,
		EntityType	type,
		boost::ptr_vector< DataForcesAndSourcesCore::EntData > &	data
	)		const

get indices by type (generic function)

Definition at line 454 of file ForcesAndSourcesCore.cpp.

        {

  PetscFunctionBegin;
  SideNumber_multiIndex& side_table = const_cast<SideNumber_multiIndex&>(numeredEntFiniteElementPtr->getSideNumberTable());
  SideNumber_multiIndex::nth_index<2>::type::iterator siit = side_table.get<2>().lower_bound(type);
  SideNumber_multiIndex::nth_index<2>::type::iterator hi_siit = side_table.get<2>().upper_bound(type);
  const boost::tuple<const boost::string_ref,EntityType> tuple
  = boost::make_tuple(field_name,type);
  FENumeredDofEntityByNameAndType::iterator dit,hi_dit;
  dit = dofs.get<Composite_Name_And_Type_mi_tag>().lower_bound(tuple);
  if(dit == dofs.get<Composite_Name_And_Type_mi_tag>().end()) {
    for(
      SideNumber_multiIndex::nth_index<2>::type::iterator
      siiit = siit;siiit!=hi_siit;siiit++
    ) {
      data[siiit->get()->side_number].getIndices().resize(0,false);
      data[siiit->get()->side_number].getLocalIndices().resize(0,false);
    }
    PetscFunctionReturn(0);
  }
  for(
    SideNumber_multiIndex::nth_index<2>::type::iterator
    siiit = siit;siiit!=hi_siit;siiit++
  ) {
    const int side_number = siiit->get()->side_number;
    data[side_number].semaphore = false;
  }
  hi_dit = dofs.get<Composite_Name_And_Type_mi_tag>().upper_bound(tuple);
  for(;dit!=hi_dit;dit++) {
    const int side = dit->get()->sideNumberPtr->side_number;
    const int nb_dofs_on_ent = dit->get()->getNbDofsOnEnt();
    VectorInt &indices = data[side].getIndices();
    VectorInt &local_indices = data[side].getLocalIndices();
    if(!data[side].semaphore) {
      data[side].semaphore = true;
      indices.resize(nb_dofs_on_ent,false);
      local_indices.resize(nb_dofs_on_ent,false);
    }
    if(!nb_dofs_on_ent) {
      continue;
    }
    const int idx = dit->get()->getEntDofIdx();
    indices[idx] = dit->get()->getPetscGlobalDofIdx();
    local_indices[idx] =  dit->get()->getPetscLocalDofIdx();
  }
  for(;siit!=hi_siit;siit++) {
    const int side_number = siit->get()->side_number;
    if(!data[side_number].semaphore) {
      data[side_number].getIndices().resize(0,false);
      data[side_number].getLocalIndices().resize(0,false);
    }
    if(siit->get()->brother_side_number!=-1) {
      ierr = getTypeIndices(
        field_name,
        dofs,type,
        side_number,
        data[siit->get()->brother_side_number].getIndices(),
        data[siit->get()->brother_side_number].getLocalIndices()
      ); CHKERRQ(ierr);
    }
  }
  PetscFunctionReturn(0);
}

operator()()

virtual PetscErrorCode MoFEM::ForcesAndSourcesCore::operator() ( )

virtual

function is run for every finite element

It is used to calculate element local matrices and assembly. It can be used for post-processing.

Reimplemented from MoFEM::BasicMethod.

Reimplemented in MoFEM::FaceElementForcesAndSourcesCore, MoFEM::VolumeElementForcesAndSourcesCore, MoFEM::FatPrismElementForcesAndSourcesCore, MoFEM::FlatPrismElementForcesAndSourcesCore, MoFEM::EdgeElementForcesAndSourcesCore, NeummanForcesSurfaceComplexForLazy::MyTriangleSpatialFE, and MoFEM::VertexElementForcesAndSourcesCore.

Definition at line 575 of file ForcesAndSourcesCore.hpp.

                                      {
    PetscFunctionBegin;
    if(operatorHook) {
      ierr = operatorHook(); CHKERRQ(ierr);
    }
    PetscFunctionReturn(0);
  }

postProcess()

virtual PetscErrorCode MoFEM::ForcesAndSourcesCore::postProcess ( )

virtual

function is run at the end of loop

It is used to assembly matrices and vectors, calculating global variables, f.e. total internal energy, ect.

Iterating over dofs: Example1 iterating over dofs in row by name of the field for(IT_GET_FEROW_BY_NAME_DOFS_FOR_LOOP(this,"DISPLACEMENT",it)) { ... }

Reimplemented from MoFEM::BasicMethod.

Reimplemented in PostProcFaceOnRefinedMesh, PostProcFatPrismOnRefinedMesh, SolidShellModule::SolidShellPrismElement::PostProcFatPrismOnTriangleOnRefinedMesh, PostProcTemplateVolumeOnRefinedMesh< MoFEM::VolumeElementForcesAndSourcesCore >, GelModule::Gel::GelFE, MoFEM::FatPrismElementForcesAndSourcesCore, KelvinVoigtDamper::DamperFE, SolidShellModule::SolidShellPrismElement::SolidShellError, SolidShellModule::SolidShellPrismElement::SolidShell, Smoother::MyVolumeFE, and NonlinearElasticElement::MyVolumeFE.

Examples:

Remodeling.hpp.

Definition at line 582 of file ForcesAndSourcesCore.hpp.

                                       {
    PetscFunctionBegin;
    if(postProcessHook) {
      ierr = postProcessHook(); CHKERRQ(ierr);
    }
    PetscFunctionReturn(0);
  }

preProcess()

virtual PetscErrorCode MoFEM::ForcesAndSourcesCore::preProcess ( )

virtual

function is run at the beginning of loop

It is used to zeroing matrices and vectors, calculation of shape functions on reference element, preprocessing boundary conditions, etc.

Reimplemented from MoFEM::BasicMethod.

Reimplemented in PostProcFaceOnRefinedMesh, PostProcFatPrismOnRefinedMesh, PostProcTemplateVolumeOnRefinedMesh< MoFEM::VolumeElementForcesAndSourcesCore >, GelModule::Gel::GelFE, MoFEM::FatPrismElementForcesAndSourcesCore, KelvinVoigtDamper::DamperFE, SurfaceSlidingConstrains::MyTriangleFE, SolidShellModule::SolidShellPrismElement::SolidShellError, SolidShellModule::SolidShellPrismElement::SolidShell, NeummanForcesSurfaceComplexForLazy::MyTriangleSpatialFE, GriffithForceElement::MyTriangleFE, NonlinearElasticElement::MyVolumeFE, Smoother::MyVolumeFE, and FluidPressure::MyTriangleFE.

Examples:

Remodeling.hpp.

Definition at line 568 of file ForcesAndSourcesCore.hpp.

                                      {
    PetscFunctionBegin;
    if(preProcessHook) {
      ierr = preProcessHook(); CHKERRQ(ierr);
    }
    PetscFunctionReturn(0);
  }

setGaussPts() [1/2]

virtual PetscErrorCode MoFEM::ForcesAndSourcesCore::setGaussPts ( int  order )

virtual

It will be removed in the future use other variant.

Reimplemented in PostProcFaceOnRefinedMesh, PostProcTemplateVolumeOnRefinedMesh< MoFEM::VolumeElementForcesAndSourcesCore >, MoFEM::VolumeElementForcesAndSourcesCoreOnSide, and NitscheMethod::MyVolumeFE.

Definition at line 336 of file ForcesAndSourcesCore.hpp.

                                                {
    PetscFunctionBegin;
    SETERRQ(PETSC_COMM_SELF,MOFEM_NOT_IMPLEMENTED,"sorry, not implemented");
    PetscFunctionReturn(0);
  }

setGaussPts() [2/2]

virtual PetscErrorCode MoFEM::ForcesAndSourcesCore::setGaussPts ( int  order_row, int  order_col, int  order_data  )

virtual

set user specific integration rule

This function allows for user defined integration rule. The key is to called matrix gaussPts, which is used by other MoFEM procedures. Matrix has number of rows equal to problem dimension plus one, where last index is used to store weight values. Number of columns is equal to number of integration points.

Note

This function is called if method ForcesAndSourcesCore::getRule is returning integer -1 or any other negative integer.

User sets

MatrixDouble gaussPts;

where

gaussPts.resize(dim+1,nb_gauss_pts);

number rows represents local coordinates of integration points in reference element, where last index in row is for integration weight.

Definition at line 364 of file ForcesAndSourcesCore.hpp.

                                                                                 {

    PetscFunctionBegin;
    ierr = setGaussPts(order_data); CHKERRQ(ierr);
    PetscFunctionReturn(0);
  }

Member Data Documentation

getRuleHook

RuleHookFun MoFEM::ForcesAndSourcesCore::getRuleHook

Hook to get rule.

Todo:

check preferred format how works with gcc and clang, see http://www.boost.org/doc/libs/1_64_0/doc/html/function/tutorial.html#idp247873024

Definition at line 319 of file ForcesAndSourcesCore.hpp.

mField

Interface& MoFEM::ForcesAndSourcesCore::mField

Examples:

MagneticElement.hpp, Remodeling.hpp, and SmallStrainPlasticity.hpp.

Definition at line 38 of file ForcesAndSourcesCore.hpp.

opPtrVector

boost::ptr_vector<UserDataOperator> MoFEM::ForcesAndSourcesCore::opPtrVector

Definition at line 559 of file ForcesAndSourcesCore.hpp.

---

The documentation for this struct was generated from the following files:

• src/finite_elements/ForcesAndSourcesCore.hpp
• src/finite_elements/impl/ForcesAndSourcesCore.cpp