Mesh refinement interface. More...

#include <src/interfaces/MeshRefinement.hpp>

Inheritance diagram for MoFEM::MeshRefinement:

Collaboration diagram for MoFEM::MeshRefinement:

Public Member Functions
MoFEMErrorCode	query_interface (const MOFEMuuid &uuid, UnknownInterface **iface) const

	MeshRefinement (const MoFEM::Core &core)

	~MeshRefinement ()
	destructor More...

virtual MoFEMErrorCode	add_vertices_in_the_middle_of_edges (const EntityHandle meshset, const BitRefLevel &bit, const bool recursive=false, int verb=QUIET, EntityHandle start_v=0)
	make vertices in the middle of edges in meshset and add them to refinement levels defined by bit More...

DEPRECATED MoFEMErrorCode	add_verices_in_the_middel_of_edges (const EntityHandle meshset, const BitRefLevel &bit, const bool recursive=false, int verb=QUIET, EntityHandle start_v=0)

virtual MoFEMErrorCode	add_vertices_in_the_middle_of_edges (const Range &edges, const BitRefLevel &bit, int verb=QUIET, EntityHandle start_v=0)
	make vertices in the middle of edges in meshset and add them to Refinement levels defined by bit More...

DEPRECATED MoFEMErrorCode	add_verices_in_the_middel_of_edges (const Range &edges, const BitRefLevel &bit, int verb=QUIET, EntityHandle start_v=0)

virtual MoFEMErrorCode	refine_TET (const EntityHandle meshset, const BitRefLevel &bit, const bool respect_interface=false, int verb=QUIET, Range *ref_edges=NULL, const bool debug=false)
	refine TET in the meshset More...

virtual MoFEMErrorCode	refine_TET (const Range &tets, const BitRefLevel &bit, const bool respect_interface=false, int verb=QUIET, Range *ref_edges=NULL, const bool debug=false)
	refine TET in the meshset More...

virtual MoFEMErrorCode	refine_PRISM (const EntityHandle meshset, const BitRefLevel &bit, int verb=QUIET)
	refine PRISM in the meshset More...

virtual MoFEMErrorCode	refine_MESHSET (const EntityHandle meshset, const BitRefLevel &bit, const bool recursive=false, int verb=QUIET)
	refine meshset, i.e. add child of refined entities to meshset More...

Public Member Functions inherited from MoFEM::UnknownInterface
template<class IFACE >
MoFEMErrorCode	registerInterface (const MOFEMuuid &uuid, bool error_if_registration_failed=true)
	Register interface. More...

template<class IFACE , bool VERIFY = false>
MoFEMErrorCode	getInterface (const MOFEMuuid &uuid, IFACE *&iface) const
	Get interface by uuid and return reference to pointer of interface. More...

template<class IFACE >
MoFEMErrorCode	getInterface (IFACE *&iface) const
	Get interface refernce to pointer of interface. More...

template<class IFACE >
MoFEMErrorCode	getInterface (IFACE **const iface) const
	Get interface pointer to pointer of interface. More...

template<class IFACE , typename boost::enable_if< boost::is_pointer< IFACE >, int >::type = 0>
IFACE	getInterface () const
	Get interface pointer to pointer of interface. More...

template<class IFACE , typename boost::enable_if< boost::is_reference< IFACE >, int >::type = 0>
IFACE	getInterface () const
	Get reference to interface. More...

template<class IFACE >
IFACE *	getInterface () const
	Function returning pointer to interface. More...

virtual	~UnknownInterface ()=default

virtual MoFEMErrorCode	getLibVersion (Version &version) const
	Get library version. More...

virtual const MoFEMErrorCode	getFileVersion (moab::Interface &moab, Version &version) const
	Get database major version. More...

virtual MoFEMErrorCode	getInterfaceVersion (Version &version) const
	Get database major version. More...

template<>
MoFEMErrorCode	getInterface (const MOFEMuuid &uuid, UnknownInterface *&iface) const

Public Attributes
MoFEM::Core &	cOre

Additional Inherited Members
Protected Member Functions inherited from MoFEM::UnknownInterface
boost::typeindex::type_index	getClassIdx (const MOFEMuuid &uid) const
	Get type name for interface Id. More...

MOFEMuuid	getUId (const boost::typeindex::type_index &class_idx) const
	Get interface Id for class name. More...

Detailed Description

Mesh refinement interface.

Currently this class is abstraction to Core interface. In future should be outsourced as independent interface.

Bug:

Not working on partitioned meshes

Need to be implemented as a stand alone interface not as a part of core structure which should be only basic database

If outsourced, class member functions should follow name convention

Spelling mistakes will be corrected with names fix to follow name convetion

Examples: bernstein_bezier_generate_base.cpp.

Definition at line 41 of file MeshRefinement.hpp.

Constructor & Destructor Documentation

◆ MeshRefinement()

MoFEM::MeshRefinement::MeshRefinement ( const MoFEM::Core & core )

Definition at line 34 of file MeshRefinement.cpp.

35 : cOre(const_cast<Core &>(core)) {}

MoFEM::MeshRefinement::cOre

MoFEM::Core & cOre

Definition: MeshRefinement.hpp:46

◆ ~MeshRefinement()

MoFEM::MeshRefinement::~MeshRefinement ( )

destructor

Definition at line 50 of file MeshRefinement.hpp.

50 {}

Member Function Documentation

◆ add_verices_in_the_middel_of_edges() [1/2]

DEPRECATED MoFEMErrorCode MoFEM::MeshRefinement::add_verices_in_the_middel_of_edges	(	const EntityHandle	meshset,
		const BitRefLevel &	bit,
		const bool	recursive = `false`,
		int	verb = `QUIET`,
		EntityHandle	start_v = `0`
	)

Deprecated:: Use function with correct spelling

Definition at line 72 of file MeshRefinement.hpp.

                                 {
     return add_vertices_in_the_middle_of_edges(meshset, bit, recursive, verb,
                                                start_v);
   }

◆ add_verices_in_the_middel_of_edges() [2/2]

DEPRECATED MoFEMErrorCode MoFEM::MeshRefinement::add_verices_in_the_middel_of_edges	(	const Range &	edges,
		const BitRefLevel &	bit,
		int	verb = `QUIET`,
		EntityHandle	start_v = `0`
	)

Deprecated:: Use function with correct spelling

Definition at line 101 of file MeshRefinement.hpp.

                                 {
     return add_vertices_in_the_middle_of_edges(edges, bit, verb, start_v);
   }

◆ add_vertices_in_the_middle_of_edges() [1/2]

MoFEMErrorCode MoFEM::MeshRefinement::add_vertices_in_the_middle_of_edges	(	const EntityHandle	meshset,
		const BitRefLevel &	bit,
		const bool	recursive = `false`,
		int	verb = `QUIET`,
		EntityHandle	start_v = `0`
	)

virtual

make vertices in the middle of edges in meshset and add them to refinement levels defined by bit

Takes entities fromm meshsets and queried recursively (get entities from meshsets in meshsets, usually have to be used for CUBIT meshset). If meshset does not contain any edges, get entities in dimension 3 and get edge adjacencies.

Parameters

EntityHandle	meshset
BitRefLevel	bitLevel
recursive	If true, meshsets containing meshsets are queried recursively. Returns the contents of meshsets, but not the meshsets themselves if true.

Definition at line 37 of file MeshRefinement.cpp.

                                     {
   Interface &m_field = cOre;
   moab::Interface &moab = m_field.get_moab();
   MoFEMFunctionBegin;
   Range edges;
   CHKERR moab.get_entities_by_type(meshset, MBEDGE, edges, recursive);
   if (edges.empty()) {
     Range tets;
     CHKERR moab.get_entities_by_type(meshset, MBTET, tets, recursive);
     CHKERR moab.get_adjacencies(tets, 1, true, edges, moab::Interface::UNION);
     if (tets.empty()) {
       Range prisms;
       CHKERR moab.get_entities_by_type(meshset, MBPRISM, prisms, recursive);
       for (Range::iterator pit = prisms.begin(); pit != prisms.end(); pit++) {
         const EntityHandle *conn;
         int num_nodes;
         CHKERR moab.get_connectivity(*pit, conn, num_nodes, true);
         assert(num_nodes == 6);
         //
         Range edge;
         CHKERR moab.get_adjacencies(&conn[0], 2, 1, true, edge);
         assert(edge.size() == 1);
         edges.insert(edge[0]);
         edge.clear();
         CHKERR moab.get_adjacencies(&conn[1], 2, 1, true, edge);
         assert(edge.size() == 1);
         edges.insert(edge[0]);
         EntityHandle conn_edge2[] = {conn[2], conn[0]};
         edge.clear();
         CHKERR moab.get_adjacencies(conn_edge2, 2, 1, true, edge);
         assert(edge.size() == 1);
         edges.insert(edge[0]);
         //
         edge.clear();
         CHKERR moab.get_adjacencies(&conn[3], 2, 1, true, edge);
         assert(edge.size() == 1);
         edges.insert(edge[0]);
         edge.clear();
         CHKERR moab.get_adjacencies(&conn[4], 2, 1, true, edge);
         assert(edge.size() == 1);
         edges.insert(edge[0]);
         EntityHandle conn_edge8[] = {conn[5], conn[3]};
         edge.clear();
         CHKERR moab.get_adjacencies(conn_edge8, 2, 1, true, edge);
         assert(edge.size() == 1);
         edges.insert(edge[0]);
       }
     }
   }
   CHKERR add_vertices_in_the_middle_of_edges(edges, bit, verb, start_v);
   MoFEMFunctionReturn(0);
 }

◆ add_vertices_in_the_middle_of_edges() [2/2]

MoFEMErrorCode MoFEM::MeshRefinement::add_vertices_in_the_middle_of_edges	(	const Range &	edges,
		const BitRefLevel &	bit,
		int	verb = `QUIET`,
		EntityHandle	start_v = `0`
	)

virtual

make vertices in the middle of edges in meshset and add them to Refinement levels defined by bit

Takes entities from meshsets and queried recursively (get entities from meshsets in meshsets, usually have to be used for CUBIT meshset). If meshset does not contain any edges, get entities in dimension 3 and get edge adjacencies.

Parameters

Range	consisting edges for refine
BitRefLevel	bitLevel
recursive	If true, meshsets containing meshsets are queried recursively. Returns the contents of meshsets, but not the meshsets themselves if true.

Definition at line 91 of file MeshRefinement.cpp.

                                                                                {
   Interface &m_field = cOre;
   moab::Interface &moab = m_field.get_moab();
   auto refined_ents_ptr = m_field.get_ref_ents();
   MoFEMFunctionBegin;
   auto miit =
       refined_ents_ptr->get<Composite_EntType_and_ParentEntType_mi_tag>()
           .lower_bound(boost::make_tuple(MBVERTEX, MBEDGE));
   auto hi_miit =
       refined_ents_ptr->get<Composite_EntType_and_ParentEntType_mi_tag>()
           .upper_bound(boost::make_tuple(MBVERTEX, MBEDGE));
   RefEntity_multiIndex_view_by_ordered_parent_entity ref_parent_ents_view;
   ref_parent_ents_view.insert(miit, hi_miit);
 
   Range edges = ents.subset_by_type(MBEDGE);
   if (verb >= VERBOSE) {
     std::ostringstream ss;
     ss << "ref level " << bit << " nb. edges to refine " << edges.size()
        << std::endl;
     PetscPrintf(m_field.get_comm(), ss.str().c_str());
   }
 
   std::array<std::vector<double>, 3> vert_coords;
   for (auto &vc : vert_coords)
     vc.reserve(edges.size());
 
   std::vector<EntityHandle> parent_edge;
   parent_edge.reserve(edges.size());
 
   std::array<double, 6> coords;
   FTensor::Tensor1<FTensor::PackPtr<double *, 0>, 3> t_0 = {
       &coords[0], &coords[1], &coords[2]};
   FTensor::Tensor1<FTensor::PackPtr<double *, 0>, 3> t_1 = {
       &coords[3], &coords[4], &coords[5]};
   FTensor::Index<'i', 3> i;
 
   Range add_bit;
   for (auto p_eit = edges.pair_begin(); p_eit != edges.pair_end(); ++p_eit) {
     auto miit_view = ref_parent_ents_view.lower_bound(p_eit->first);
 
     Range edge_having_parent_vertex;
     if (miit_view != ref_parent_ents_view.end()) {
       for (auto hi_miit_view = ref_parent_ents_view.upper_bound(p_eit->second);
            miit_view != hi_miit_view; ++miit_view) {
         edge_having_parent_vertex.insert(edge_having_parent_vertex.end(),
                                          miit_view->get()->getParentEnt());
         add_bit.insert(add_bit.end(), miit_view->get()->getEnt());
       }
     }
 
     Range add_vertex_edges =
         subtract(Range(p_eit->first, p_eit->second), edge_having_parent_vertex);
 
     for (auto e : add_vertex_edges)
       parent_edge.emplace_back(e);
 
     for (auto e : add_vertex_edges) {
 
       const EntityHandle *conn;
       int num_nodes;
       CHKERR moab.get_connectivity(e, conn, num_nodes, true);
       if (PetscUnlikely(num_nodes != 2)) {
         SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
                 "edge should have 2 edges");
       }
       CHKERR moab.get_coords(conn, num_nodes, coords.data());
       t_0(i) += t_1(i);
       t_0(i) *= 0.5;
 
       for (auto j : {0, 1, 2})
         vert_coords[j].emplace_back(t_0(j));
     }
   }
 
   CHKERR m_field.getInterface<BitRefManager>()->addBitRefLevel(add_bit, bit);
 
   if (!vert_coords[0].empty()) {
     ReadUtilIface *read_util;
     CHKERR moab.query_interface(read_util);
     int num_nodes = vert_coords[0].size();
     vector<double *> arrays_coord;
     CHKERR read_util->get_node_coords(3, num_nodes, 0, start_v, arrays_coord);
     Range verts(start_v, start_v + num_nodes - 1);
     for (auto dd : {0, 1, 2}) {
       std::copy(vert_coords[dd].begin(), vert_coords[dd].end(),
                 arrays_coord[dd]);
     }
     CHKERR moab.tag_set_data(cOre.get_th_RefParentHandle(), verts,
                              &*parent_edge.begin());
     CHKERR m_field.getInterface<BitRefManager>()->setEntitiesBitRefLevel(
         verts, bit, verb);
   }
   MoFEMFunctionReturn(0);
 } 

◆ query_interface()

MoFEMErrorCode MoFEM::MeshRefinement::query_interface	(	const MOFEMuuid &	uuid,
		UnknownInterface **	iface
	)		const

virtual

Implements MoFEM::UnknownInterface.

Definition at line 22 of file MeshRefinement.cpp.

                                                                                {
   MoFEMFunctionBeginHot;
   *iface = NULL;
   if (uuid == IDD_MOFEMMeshRefine) {
     *iface = const_cast<MeshRefinement *>(this);
     MoFEMFunctionReturnHot(0);
   }
   SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY, "unknown interface");
   MoFEMFunctionReturnHot(0);
 }

◆ refine_MESHSET()

MoFEMErrorCode MoFEM::MeshRefinement::refine_MESHSET	(	const EntityHandle	meshset,
		const BitRefLevel &	bit,
		const bool	recursive = `false`,
		int	verb = `QUIET`
	)

virtual

refine meshset, i.e. add child of refined entities to meshset

Parameters

EntityHandle	meshset where to save the child refined entities
BitRefLevel	bitLevel
recursive	If true, meshsets containing meshsets are queried recursively. Returns the contents of meshsets, but not the meshsets themselves if true.

Definition at line 954 of file MeshRefinement.cpp.

                                                                               {
   Interface &m_field = cOre;
   auto refined_ents_ptr = m_field.get_ref_ents();
   MoFEMFunctionBegin;
   typedef const RefEntity_multiIndex::index<Ent_mi_tag>::type RefEntsByEnt;
   RefEntsByEnt::iterator miit = refined_ents_ptr->find(meshset);
   if (miit == refined_ents_ptr->end()) {
     SETERRQ(m_field.get_comm(), MOFEM_DATA_INCONSISTENCY,
             "this meshset is not in ref database");
   }
   CHKERR m_field.getInterface<BitRefManager>()->updateMeshsetByEntitiesChildren(
       meshset, bit, meshset, MBEDGE, recursive, verb);
   CHKERR m_field.getInterface<BitRefManager>()->updateMeshsetByEntitiesChildren(
       meshset, bit, meshset, MBTRI, recursive, verb);
   CHKERR m_field.getInterface<BitRefManager>()->updateMeshsetByEntitiesChildren(
       meshset, bit, meshset, MBTET, recursive, verb);
   *(const_cast<RefEntity *>(miit->get())->getBitRefLevelPtr()) |= bit;
   MoFEMFunctionReturn(0);
 }

◆ refine_PRISM()

MoFEMErrorCode MoFEM::MeshRefinement::refine_PRISM	(	const EntityHandle	meshset,
		const BitRefLevel &	bit,
		int	verb = `QUIET`
	)

virtual

refine PRISM in the meshset

Parameters

EntityHandle	meshset
BitRefLevel	bitLevel

Definition at line 762 of file MeshRefinement.cpp.

                                                                               {
 
   Interface &m_field = cOre;
   moab::Interface &moab = m_field.get_moab();
   auto refined_ents_ptr = m_field.get_ref_ents();
   auto refined_finite_elements_ptr = m_field.get_ref_finite_elements();
 
   // FIXME: refinement is based on entity handlers, should work on global ids of
   // nodes, this will allow parallelise algorithm in the future
 
   MoFEMFunctionBegin;
 
   typedef const RefEntity_multiIndex::index<Ent_mi_tag>::type RefEntsByEnt;
 
   typedef const RefElement_multiIndex_parents_view::index<
       Composite_ParentEnt_And_BitsOfRefinedEdges_mi_tag>::type
       RefEntByParentAndRefEdges;
   RefElement_multiIndex_parents_view ref_ele_parent_view;
   ref_ele_parent_view.insert(
       refined_finite_elements_ptr->get<Ent_mi_tag>().lower_bound(
           get_id_for_min_type<MBPRISM>()),
       refined_finite_elements_ptr->get<Ent_mi_tag>().upper_bound(
           get_id_for_max_type<MBPRISM>()));
   RefEntByParentAndRefEdges &ref_ele_by_parent_and_ref_edges =
       ref_ele_parent_view
           .get<Composite_ParentEnt_And_BitsOfRefinedEdges_mi_tag>();
   // find all vertices which parent is edge
   typedef const RefEntity_multiIndex::index<
       Composite_EntType_and_ParentEntType_mi_tag>::type RefEntsByComposite;
   RefEntsByComposite &ref_ents_by_comp =
       refined_ents_ptr->get<Composite_EntType_and_ParentEntType_mi_tag>();
   RefEntity_multiIndex_view_by_hashed_parent_entity ref_parent_ents_view;
   ref_parent_ents_view.insert(
       ref_ents_by_comp.lower_bound(boost::make_tuple(MBVERTEX, MBEDGE)),
       ref_ents_by_comp.upper_bound(boost::make_tuple(MBVERTEX, MBEDGE)));
   Range prisms;
   CHKERR moab.get_entities_by_type(meshset, MBPRISM, prisms, false);
   Range::iterator pit = prisms.begin();
   for (; pit != prisms.end(); pit++) {
     RefEntsByEnt::iterator miit_prism =
         refined_ents_ptr->get<Ent_mi_tag>().find(*pit);
     if (miit_prism == refined_ents_ptr->end()) {
       SETERRQ(m_field.get_comm(), MOFEM_DATA_INCONSISTENCY,
               "this prism is not in ref database");
     }
     if (verb >= NOISY) {
       std::ostringstream ss;
       ss << "ref prism " << **miit_prism << std::endl;
       PetscPrintf(m_field.get_comm(), ss.str().c_str());
     }
     // prism connectivity
     int num_nodes;
     const EntityHandle *conn;
     CHKERR moab.get_connectivity(*pit, conn, num_nodes, true);
     assert(num_nodes == 6);
     // edges connectivity
     EntityHandle edges[6];
     for (int ee = 0; ee < 3; ee++) {
       CHKERR moab.side_element(*pit, 1, ee, edges[ee]);
     }
     for (int ee = 6; ee < 9; ee++) {
       CHKERR moab.side_element(*pit, 1, ee, edges[ee - 3]);
     }
     // detect split edges
     BitRefEdges split_edges(0);
     EntityHandle edge_nodes[6];
     std::fill(&edge_nodes[0], &edge_nodes[6], no_handle);
     for (int ee = 0; ee < 6; ee++) {
       RefEntity_multiIndex_view_by_hashed_parent_entity::iterator miit_view =
           ref_parent_ents_view.find(edges[ee]);
       if (miit_view != ref_parent_ents_view.end()) {
         if (((*miit_view)->getBitRefLevel() & bit).any()) {
           edge_nodes[ee] = (*miit_view)->getEnt();
           split_edges.set(ee);
         }
       }
     }
     if (split_edges.count() == 0) {
       *(const_cast<RefEntity *>(miit_prism->get())->getBitRefLevelPtr()) |= bit;
       if (verb >= VERY_NOISY)
         PetscPrintf(m_field.get_comm(), "no refinement");
       continue;
     }
     // check consistency
     if (verb >= NOISY) {
       std::ostringstream ss;
       ss << "prism split edges " << split_edges << " count "
          << split_edges.count() << std::endl;
       PetscPrintf(m_field.get_comm(), ss.str().c_str());
     }
     // prism ref
     EntityHandle new_prism_conn[4 * 6];
     std::fill(&new_prism_conn[0], &new_prism_conn[4 * 6], no_handle);
     int nb_new_prisms = 0;
     switch (split_edges.count()) {
     case 0:
       break;
     case 2:
       CHKERR prism_type_1(conn, split_edges, edge_nodes, new_prism_conn);
       nb_new_prisms = 2;
       break;
     case 4:
       CHKERR prism_type_2(conn, split_edges, edge_nodes, new_prism_conn);
       nb_new_prisms = 3;
       break;
     case 6:
       CHKERR prism_type_3(conn, split_edges, edge_nodes, new_prism_conn);
       nb_new_prisms = 4;
       break;
     default:
       std::ostringstream ss;
       ss << split_edges << " : [ " << conn[0] << " " << conn[1] << " "
          << conn[2] << " " << conn[3] << " " << conn[4] << " " << conn[5]
          << " ]";
       SETERRQ(m_field.get_comm(), MOFEM_DATA_INCONSISTENCY, ss.str().c_str());
     }
     // find that prism
     std::bitset<4> ref_prism_bit(0);
     RefEntByParentAndRefEdges::iterator it_by_ref_edges =
         ref_ele_by_parent_and_ref_edges.lower_bound(
             boost::make_tuple(*pit, split_edges.to_ulong()));
     RefEntByParentAndRefEdges::iterator hi_it_by_ref_edges =
         ref_ele_by_parent_and_ref_edges.upper_bound(
             boost::make_tuple(*pit, split_edges.to_ulong()));
     RefEntByParentAndRefEdges::iterator it_by_ref_edges2 = it_by_ref_edges;
     for (int pp = 0; it_by_ref_edges2 != hi_it_by_ref_edges;
          it_by_ref_edges2++, pp++) {
       // Add this tet to this ref
       *(const_cast<RefElement *>(it_by_ref_edges2->get())
             ->getBitRefLevelPtr()) |= bit;
       ref_prism_bit.set(pp, 1);
       if (verb > 2) {
         std::ostringstream ss;
         ss << "is refined " << *it_by_ref_edges2 << std::endl;
         PetscPrintf(m_field.get_comm(), ss.str().c_str());
       }
     }
     if (it_by_ref_edges != hi_it_by_ref_edges) {
       if (ref_prism_bit.count() != (unsigned int)nb_new_prisms)
         SETERRQ(m_field.get_comm(), MOFEM_DATA_INCONSISTENCY,
                 "data inconsistency");
     } else {
       EntityHandle ref_prisms[4];
       // create prism
       for (int pp = 0; pp < nb_new_prisms; pp++) {
         if (verb > 3) {
           std::ostringstream ss;
           ss << "ref prism " << ref_prism_bit << std::endl;
           PetscPrintf(m_field.get_comm(), ss.str().c_str());
         }
         if (!ref_prism_bit.test(pp)) {
           CHKERR moab.create_element(MBPRISM, &new_prism_conn[6 * pp], 6,
                                      ref_prisms[pp]);
           CHKERR moab.tag_set_data(cOre.get_th_RefParentHandle(),
                                    &ref_prisms[pp], 1, &*pit);
           CHKERR moab.tag_set_data(cOre.get_th_RefBitLevel(), &ref_prisms[pp],
                                    1, &bit);
           CHKERR moab.tag_set_data(cOre.get_th_RefBitEdge(), &ref_prisms[pp], 1,
                                    &split_edges);
           std::pair<RefEntity_multiIndex::iterator, bool> p_ent =
               const_cast<RefEntity_multiIndex *>(refined_ents_ptr)
                   ->insert(boost::shared_ptr<RefEntity>(new RefEntity(
                       m_field.get_basic_entity_data_ptr(), ref_prisms[pp])));
           std::pair<RefElement_multiIndex::iterator, bool> p_fe;
           try {
             p_fe =
                 const_cast<RefElement_multiIndex *>(refined_finite_elements_ptr)
                     ->insert(boost::shared_ptr<RefElement>(
                         new RefElement_PRISM(*p_ent.first)));
           } catch (MoFEMException const &e) {
             SETERRQ(PETSC_COMM_SELF, e.errorCode, e.errorMessage);
           }
           ref_prism_bit.set(pp);
           CHKERR cOre.addPrismToDatabase(ref_prisms[pp]);
           if (verb > 2) {
             std::ostringstream ss;
             ss << "add prism: " << **p_fe.first << std::endl;
             if (verb > 7) {
               for (int nn = 0; nn < 6; nn++) {
                 ss << new_prism_conn[nn] << " ";
               }
               ss << std::endl;
             }
             PetscPrintf(m_field.get_comm(), ss.str().c_str());
           }
         }
       }
     }
   }
   MoFEMFunctionReturn(0);
 }

◆ refine_TET() [1/2]

MoFEMErrorCode MoFEM::MeshRefinement::refine_TET	(	const EntityHandle	meshset,
		const BitRefLevel &	bit,
		const bool	respect_interface = `false`,
		int	verb = `QUIET`,
		Range *	ref_edges = `NULL`,
		const bool	debug = `false`
	)

virtual

refine TET in the meshset

Parameters

EntityHandle	meshset
BitRefLevel	bitLevel
bool	respect_interface If TRUE, interface elements would be refined
verb	verbosity level
Range	* pointer to range in not null check consistency of refinement

Definition at line 187 of file MeshRefinement.cpp.

                                                             {
   Interface &m_field = cOre;
   moab::Interface &moab = m_field.get_moab();
   MoFEMFunctionBegin;
   Range tets;
   CHKERR moab.get_entities_by_type(meshset, MBTET, tets, false);
   CHKERR refine_TET(tets, bit, respect_interface, verb, ref_edges_ptr, debug);
   MoFEMFunctionReturn(0);
 }

◆ refine_TET() [2/2]

MoFEMErrorCode MoFEM::MeshRefinement::refine_TET	(	const Range &	tets,
		const BitRefLevel &	bit,
		const bool	respect_interface = `false`,
		int	verb = `QUIET`,
		Range *	ref_edges = `NULL`,
		const bool	debug = `false`
	)

virtual

refine TET in the meshset

Parameters

Range	of tets to refine
BitRefLevel	bitLevel
BitRefLevel	bitLevel
bool	respect_interface If TRUE, interface elements would be refined
verb	verbosity level
Range	* pointer to range in not null check consistency of refinement

Definition at line 201 of file MeshRefinement.cpp.

                                                             {
 
   Interface &m_field = cOre;
   moab::Interface &moab = m_field.get_moab();
   auto refined_ents_ptr = m_field.get_ref_ents();
   auto refined_finite_elements_ptr = m_field.get_ref_finite_elements();
   ReadUtilIface *read_util;
   MoFEMFunctionBegin;
 
   CHKERR m_field.get_moab().query_interface(read_util);
 
   // Check if refinement is correct
   struct Check {
     map<EntityHandle, EntityHandle> entParentMap;
     MoFEMErrorCode operator()(Range *ref_edges,
                               const RefEntity_multiIndex *ref_ents_ptr,
                               MoFEM::Core &core) {
       MoFEMFunctionBegin;
       if (!ref_edges)
         MoFEMFunctionReturnHot(0);
       for (Range::iterator eit = ref_edges->begin(); eit != ref_edges->end();
            ++eit) {
         RefEntity_multiIndex::index<
             Composite_ParentEnt_And_EntType_mi_tag>::type::iterator vit =
             ref_ents_ptr->get<Composite_ParentEnt_And_EntType_mi_tag>().find(
                 boost::make_tuple(MBVERTEX, *eit));
         if (vit ==
             ref_ents_ptr->get<Composite_ParentEnt_And_EntType_mi_tag>().end()) {
           RefEntity_multiIndex::iterator e_eit = ref_ents_ptr->find(*eit);
           if (e_eit == ref_ents_ptr->end()) {
             SETERRQ1(PETSC_COMM_WORLD, MOFEM_DATA_INCONSISTENCY,
                      "Edge not found %ld", *eit);
           }
           cerr << "Parent edge" << endl << **e_eit << endl;
           if (entParentMap.find(*eit) != entParentMap.end()) {
             RefEntity_multiIndex::iterator v_eit =
                 ref_ents_ptr->find(entParentMap[*eit]);
             if (v_eit == ref_ents_ptr->end()) {
               SETERRQ(PETSC_COMM_WORLD, MOFEM_DATA_INCONSISTENCY,
                       "Vertex not found");
             }
             cerr << "Vertex " << **v_eit << endl;
           }
           RefEntity_multiIndex::index<Ent_Ent_mi_tag>::type::iterator ee_it,
               ee_hi_it;
           ee_it = ref_ents_ptr->get<Ent_Ent_mi_tag>().lower_bound(*eit);
           ee_hi_it = ref_ents_ptr->get<Ent_Ent_mi_tag>().upper_bound(*eit);
           for (; ee_it != ee_hi_it; ++ee_it) {
             cerr << "Ent having edge parent by parent " << **ee_it << endl;
           }
           RefEntity_multiIndex tmp_index;
           tmp_index.insert(ref_ents_ptr->begin(), ref_ents_ptr->end());
           RefEntity_multiIndex::index<
               Composite_ParentEnt_And_EntType_mi_tag>::type::iterator vvit =
               tmp_index.get<Composite_ParentEnt_And_EntType_mi_tag>().find(
                   boost::make_tuple(MBVERTEX, *eit));
           if (vvit !=
               tmp_index.get<Composite_ParentEnt_And_EntType_mi_tag>().end()) {
             cerr << "Tmp idx Vertex " << **vvit << endl;
           }
           SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
                   "No vertex on trim edges, that make no sense");
         } else {
           entParentMap[vit->get()->getParentEnt()] = vit->get()->getEnt();
         }
       }
       MoFEMFunctionReturn(0);
     }
   };
 
   struct SetParent {
     map<EntityHandle, EntityHandle> parentsToChange;
     MoFEMErrorCode operator()(const EntityHandle ent, const EntityHandle parent,
                               const RefEntity_multiIndex *ref_ents_ptr,
                               MoFEM::Core &cOre) {
       MoFEM::Interface &m_field = cOre;
       MoFEMFunctionBegin;
       RefEntity_multiIndex::iterator it = ref_ents_ptr->find(ent);
       if (it != ref_ents_ptr->end()) {
         if (it->get()->getParentEnt() != parent && ent != parent) {
           parentsToChange[ent] = parent;
         }
       } else {
         if (ent != parent) {
           CHKERR m_field.get_moab().tag_set_data(cOre.get_th_RefParentHandle(),
                                                  &ent, 1, &parent);
         }
       }
       MoFEMFunctionReturn(0);
     }
     MoFEMErrorCode operator()(const RefEntity_multiIndex *ref_ents_ptr) {
       MoFEMFunctionBegin;
       for (map<EntityHandle, EntityHandle>::iterator mit =
                parentsToChange.begin();
            mit != parentsToChange.end(); ++mit) {
         RefEntity_multiIndex::iterator it = ref_ents_ptr->find(mit->first);
         bool success = const_cast<RefEntity_multiIndex *>(ref_ents_ptr)
                            ->modify(it, RefEntity_change_parent(mit->second));
         if (!success) {
           SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
                   "impossible to set parent");
         }
       }
       MoFEMFunctionReturn(0);
     }
   };
   SetParent set_parent;
 
   Range ents_to_set_bit;
 
   Check check;
   if (debug)
     CHKERR check(ref_edges_ptr, refined_ents_ptr, cOre);
 
   // FIXME: refinement is based on entity handlers, should work on global ids of
   // nodes, this will allow parallelise algorithm in the future
 
   // Find all vertices which parent is edge
   typedef const RefEntity_multiIndex::index<
       Composite_EntType_and_ParentEntType_mi_tag>::type RefEntsByComposite;
   RefEntsByComposite &ref_ents =
       refined_ents_ptr->get<Composite_EntType_and_ParentEntType_mi_tag>();
   RefEntity_multiIndex_view_by_hashed_parent_entity ref_parent_ents_view;
   ref_parent_ents_view.insert(
       ref_ents.lower_bound(boost::make_tuple(MBVERTEX, MBEDGE)),
       ref_ents.upper_bound(boost::make_tuple(MBVERTEX, MBEDGE)));
   typedef const RefElement_multiIndex::index<Ent_mi_tag>::type RefElementByEnt;
   RefElementByEnt &ref_finite_element =
       refined_finite_elements_ptr->get<Ent_mi_tag>();
   typedef const RefElement_multiIndex_parents_view::index<
       Composite_ParentEnt_And_BitsOfRefinedEdges_mi_tag>::type
       RefEntByParentAndRefEdges;
   RefElement_multiIndex_parents_view ref_ele_parent_view;
   ref_ele_parent_view.insert(
       refined_finite_elements_ptr->get<Ent_mi_tag>().lower_bound(
           get_id_for_min_type<MBTET>()),
       refined_finite_elements_ptr->get<Ent_mi_tag>().upper_bound(
           get_id_for_max_type<MBTET>()));
   RefEntByParentAndRefEdges &ref_ele_by_parent_and_ref_edges =
       ref_ele_parent_view
           .get<Composite_ParentEnt_And_BitsOfRefinedEdges_mi_tag>();
 
   if (respect_interface) {
     SETERRQ(m_field.get_comm(), MOFEM_DATA_INCONSISTENCY,
             "not implemented, set last parameter in refine_TET to false");
   }
 
   Range tets = _tets.subset_by_type(MBTET);
 
   std::vector<EntityHandle> parent_ents_refined_and_created;
   std::vector<EntityHandle> vertices_of_created_tets;
   std::vector<BitRefEdges> parent_edges_bit_vec;
   std::vector<int> nb_new_tets_vec;
   std::vector<int> sub_type_vec;
 
   parent_ents_refined_and_created.reserve(tets.size());
   vertices_of_created_tets.reserve(4 * tets.size());
   parent_edges_bit_vec.reserve(tets.size());
   nb_new_tets_vec.reserve(tets.size());
   sub_type_vec.reserve(tets.size());
 
   // make loop over all tets which going to be refined
   for (auto tit : tets) {
 
     if (ref_finite_element.find(tit) == ref_finite_element.end()) {
       SETERRQ(m_field.get_comm(), MOFEM_DATA_INCONSISTENCY,
               "this tet is not in refinedFiniteElements");
     }
 
     // get tet connectivity
     const EntityHandle *conn;
     int num_nodes;
     CHKERR moab.get_connectivity(tit, conn, num_nodes, true);
 
     // get edges
     BitRefEdges parent_edges_bit(0);
     EntityHandle edge_new_nodes[] = {0, 0, 0, 0, 0, 0};
     int split_edges[] = {-1, -1, -1, -1, -1, -1};
 
     for (int ee = 0; ee != 6; ++ee) {
       EntityHandle edge;
       CHKERR moab.side_element(tit, 1, ee, edge);
       RefEntity_multiIndex_view_by_hashed_parent_entity::iterator eit =
           ref_parent_ents_view.find(edge);
       if (eit != ref_parent_ents_view.end()) {
         if (((*eit)->getBitRefLevel() & bit).any()) {
           edge_new_nodes[ee] = (*eit)->getEnt();
           {
             const EntityHandle *conn_edge;
             int num_nodes;
             moab.get_connectivity(edge, conn_edge, num_nodes, true);
             if (conn_edge[0] == edge_new_nodes[ee]) {
               SETERRQ(m_field.get_comm(), MOFEM_DATA_INCONSISTENCY,
                       "node 0 on the edges is mid node, that make no sense");
             }
             if (conn_edge[1] == edge_new_nodes[ee]) {
               SETERRQ(m_field.get_comm(), MOFEM_DATA_INCONSISTENCY,
                       "node 1 on the edges is mid node, that make no sense");
             }
           }
           split_edges[parent_edges_bit.count()] = ee;
           parent_edges_bit.set(ee, 1);
         }
       }
     }
 
     // test if nodes used to refine are not part of tet
     if (debug) {
       for (int ee = 0; ee != 6; ee++) {
         if (edge_new_nodes[ee] == no_handle)
           continue;
         for (int nn = 0; nn != 4; nn++) {
           if (conn[nn] == edge_new_nodes[ee]) {
             std::cerr << "problem on edge: " << ee << endl;
             std::cerr << "tet conn : " << conn[0] << " " << conn[1] << " "
                       << conn[2] << " " << conn[3] << " : "
                       << edge_new_nodes[ee] << std::endl;
             for (int eee = 0; eee != 6; ++eee) {
               EntityHandle edge;
               CHKERR moab.side_element(tit, 1, eee, edge);
               const EntityHandle *conn_edge;
               int num_nodes;
               CHKERR moab.get_connectivity(edge, conn_edge, num_nodes, true);
               std::cerr << eee << " : " << conn_edge[0] << " " << conn_edge[1]
                         << std::endl;
             }
             SETERRQ(m_field.get_comm(), MOFEM_DATA_INCONSISTENCY,
                     "nodes used to refine are not part of tet");
           }
         }
       }
     }
 
     // swap nodes forward
     EntityHandle _conn_[4];
     std::copy(&conn[0], &conn[4], &_conn_[0]);
 
     // build connectivity for ref tets
     EntityHandle new_tets_conns[8 * 4];
     std::fill(&new_tets_conns[0], &new_tets_conns[8 * 4], no_handle);
 
     int sub_type = -1, nb_new_tets = 0;
     switch (parent_edges_bit.count()) {
     case 0: {
       RefEntity_multiIndex::iterator tit_miit;
       tit_miit = refined_ents_ptr->find(tit);
       if (tit_miit == refined_ents_ptr->end())
         SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
                 "can not find this tet");
       ents_to_set_bit.insert(tit);
       continue;
     } break;
     case 1:
       sub_type = 0;
       tet_type_1(_conn_, split_edges[0], edge_new_nodes[split_edges[0]],
                  new_tets_conns);
       nb_new_tets = 2;
       break;
     case 2:
       sub_type =
           tet_type_2(_conn_, split_edges, edge_new_nodes, new_tets_conns);
       if (sub_type & (4 | 8 | 16)) {
         nb_new_tets = 3;
         break;
       } else if (sub_type == 1) {
         nb_new_tets = 4;
         break;
       };
       SETERRQ(PETSC_COMM_SELF, MOFEM_IMPOSIBLE_CASE, "Imposible case");
       break;
     case 3:
       sub_type =
           tet_type_3(_conn_, split_edges, edge_new_nodes, new_tets_conns);
       if (sub_type <= 4) {
         nb_new_tets = 4;
         break;
       } else if (sub_type <= 7) {
         nb_new_tets = 5;
         break;
       }
       SETERRQ(PETSC_COMM_SELF, MOFEM_IMPOSIBLE_CASE, "Imposible case");
     case 4:
       sub_type =
           tet_type_4(_conn_, split_edges, edge_new_nodes, new_tets_conns);
       if (sub_type == 0) {
         nb_new_tets = 5;
         break;
       } else if (sub_type <= 7) {
         nb_new_tets = 6;
         break;
       }
       SETERRQ(PETSC_COMM_SELF, MOFEM_IMPOSIBLE_CASE, "Imposible case");
     case 5:
       sub_type = tet_type_5(moab, _conn_, edge_new_nodes, new_tets_conns);
       nb_new_tets = 7;
       break;
     case 6:
       sub_type = 0;
       tet_type_6(moab, _conn_, edge_new_nodes, new_tets_conns);
       nb_new_tets = 8;
       break;
     default:
       SETERRQ(PETSC_COMM_SELF, MOFEM_IMPOSIBLE_CASE, "Imposible case");
     }
 
     // find that tets
     auto it_by_ref_edges = ref_ele_by_parent_and_ref_edges.equal_range(
         boost::make_tuple(tit, parent_edges_bit.to_ulong()));
     // check if tet with this refinement scheme already exits
     std::vector<EntityHandle> ents_to_set_bit_vec;
     if (std::distance(it_by_ref_edges.first, it_by_ref_edges.second) ==
         static_cast<size_t>(nb_new_tets)) {
       ents_to_set_bit_vec.reserve(nb_new_tets);
       for (int tt = 0; it_by_ref_edges.first != it_by_ref_edges.second;
            it_by_ref_edges.first++, tt++) {
         auto tet = (*it_by_ref_edges.first)->getEnt();
         ents_to_set_bit_vec.emplace_back(tet);
         // set ref tets entities
         if (debug) {
           // add this tet if exist to this ref level
           RefEntity_multiIndex::iterator ref_tet_it;
           ref_tet_it = refined_ents_ptr->find(tet);
           if (ref_tet_it == refined_ents_ptr->end()) {
             SETERRQ(m_field.get_comm(), MOFEM_DATA_INCONSISTENCY,
                     "Tetrahedron should be in database");
           }
         }
       }
       ents_to_set_bit.insert_list(ents_to_set_bit_vec.begin(),
                                   ents_to_set_bit_vec.end());
 
     } else {
       // if this element was not refined or was refined with different patterns
       // of split edges create new elements
 
       parent_ents_refined_and_created.emplace_back(tit);
       for (int tt = 0; tt != nb_new_tets; ++tt) {
         for (auto nn : {0, 1, 2, 3})
           vertices_of_created_tets.emplace_back(new_tets_conns[4 * tt + nn]);
       }
       parent_edges_bit_vec.emplace_back(parent_edges_bit);
       nb_new_tets_vec.emplace_back(nb_new_tets);
       sub_type_vec.emplace_back(sub_type);
     }
   }
 
   // Create tets
   EntityHandle start_e = 0;
   EntityHandle *conn_moab;
   const int nb_new_tets = vertices_of_created_tets.size() / 4;
   read_util->get_element_connect(nb_new_tets, 4, MBTET, 0, start_e, conn_moab);
   std::copy(vertices_of_created_tets.begin(), vertices_of_created_tets.end(),
             conn_moab);
   CHKERR read_util->update_adjacencies(start_e, nb_new_tets, 4, conn_moab);
   ents_to_set_bit.insert(start_e, start_e + nb_new_tets - 1);
 
   // Create adj entities
   for (auto d : {1, 2}) {
     Range ents;
     CHKERR moab.get_adjacencies(ents_to_set_bit, d, true, ents,
                                 moab::Interface::UNION);
   }
 
   // Set parrents and adjacencies
   for (int idx = 0; idx != parent_ents_refined_and_created.size(); ++idx) {
 
     const EntityHandle tit = parent_ents_refined_and_created[idx];
     const BitRefEdges &parent_edges_bit = parent_edges_bit_vec[idx];
     const int nb_new_tets = nb_new_tets_vec[idx];
     const int sub_type = sub_type_vec[idx];
 
     std::array<EntityHandle, 8> ref_tets;
     for (int tt = 0; tt != nb_new_tets; ++tt, ++start_e)
       ref_tets[tt] = start_e;
 
     if (nb_new_tets) {
 
       int ref_type[2];
       ref_type[0] = parent_edges_bit.count();
       ref_type[1] = sub_type;
       for (int tt = 0; tt != nb_new_tets; ++tt) {
         CHKERR moab.tag_set_data(cOre.get_th_RefType(), &ref_tets[tt], 1,
                                  ref_type);
         CHKERR moab.tag_set_data(cOre.get_th_RefBitEdge(), &ref_tets[tt], 1,
                                  &parent_edges_bit);
         CHKERR moab.tag_set_data(cOre.get_th_RefParentHandle(), &ref_tets[tt],
                                  1, &tit);
       }
 
       // hash map of nodes (RefEntity) by edges (EntityHandle)
       std::map<EntityHandle /*edge*/, EntityHandle /*node*/>
           map_ref_nodes_by_edges;
 
       Range tet_edges;
       CHKERR moab.get_adjacencies(&tit, 1, 1, false, tet_edges);
       for (auto edge : tet_edges) {
         RefEntity_multiIndex_view_by_hashed_parent_entity::iterator eit =
             ref_parent_ents_view.find(edge);
         if (eit != ref_parent_ents_view.end()) {
           if (((*eit)->getBitRefLevel() & bit).any()) {
             map_ref_nodes_by_edges[(*eit)->getParentEnt()] =
                 eit->get()->getEnt();
           }
         }
       }
 
       // find parents for new edges and faces
       // get tet edges and faces
       Range tit_edges, tit_faces;
       CHKERR moab.get_adjacencies(&tit, 1, 1, false, tit_edges);
       CHKERR moab.get_adjacencies(&tit, 1, 2, false, tit_faces);
       Range edges_nodes[6], faces_nodes[4];
       // for edges - add ref nodes
       // edges_nodes[ee] - contains all nodes on edge ee including mid nodes if
       // exist
       Range::iterator eit = tit_edges.begin();
       for (int ee = 0; eit != tit_edges.end(); eit++, ee++) {
         CHKERR moab.get_connectivity(&*eit, 1, edges_nodes[ee], true);
         std::map<EntityHandle, EntityHandle>::iterator map_miit =
             map_ref_nodes_by_edges.find(*eit);
         if (map_miit != map_ref_nodes_by_edges.end()) {
           edges_nodes[ee].insert(map_miit->second);
         }
       }
       // for faces - add ref nodes
       // faces_nodes[ff] - contains all nodes on face ff including mid nodes if
       // exist
       Range::iterator fit = tit_faces.begin();
       for (int ff = 0; fit != tit_faces.end(); fit++, ff++) {
         CHKERR moab.get_connectivity(&*fit, 1, faces_nodes[ff], true);
         // Get edges on face and loop over those edges to add mid-nodes to range
         Range fit_edges;
         CHKERR moab.get_adjacencies(&*fit, 1, 1, false, fit_edges);
         for (Range::iterator eit2 = fit_edges.begin(); eit2 != fit_edges.end();
              eit2++) {
           std::map<EntityHandle, EntityHandle>::iterator map_miit =
               map_ref_nodes_by_edges.find(*eit2);
           if (map_miit != map_ref_nodes_by_edges.end()) {
             faces_nodes[ff].insert(map_miit->second);
           }
         }
       }
       // add ref nodes to tet
       // tet_nodes contains all nodes on tet including mid edge nodes
       Range tet_nodes;
       CHKERR moab.get_connectivity(&tit, 1, tet_nodes, true);
       for (std::map<EntityHandle, EntityHandle>::iterator map_miit =
                map_ref_nodes_by_edges.begin();
            map_miit != map_ref_nodes_by_edges.end(); map_miit++) {
         tet_nodes.insert(map_miit->second);
       }
       Range ref_edges;
       // Get all all edges of refined tets
       CHKERR moab.get_adjacencies(ref_tets.data(), nb_new_tets, 1, false,
                                   ref_edges, moab::Interface::UNION);
       // Check for all ref edge and set parents
       for (Range::iterator reit = ref_edges.begin(); reit != ref_edges.end();
            reit++) {
         Range ref_edges_nodes;
         CHKERR moab.get_connectivity(&*reit, 1, ref_edges_nodes, true);
         if (ref_edges_nodes.size() != 2) {
           SETERRQ(m_field.get_comm(), MOFEM_DATA_INCONSISTENCY,
                   "data inconsistency, edge should have 2 nodes");
         }
         // Check if ref edge is an coarse edge (loop over coarse tet edges)
         int ee = 0;
         for (; ee < 6; ee++) {
           // Two nodes are common (node[0],node[1],ref_node (if exist))
           // this tests if given edge is contained by edge of refined
           // tetrahedral
           if (intersect(edges_nodes[ee], ref_edges_nodes).size() == 2) {
             EntityHandle edge = tit_edges[ee];
             CHKERR set_parent(*reit, edge, refined_ents_ptr, cOre);
             break;
           }
         }
         if (ee < 6)
           continue; // this refined edge is contained by edge of tetrahedral
         // check if ref edge is in coarse face
         int ff = 0;
         for (; ff < 4; ff++) {
           // two nodes are common (node[0],node[1],ref_node (if exist))
           // this tests if given face is contained by face of  tetrahedral
           if (intersect(faces_nodes[ff], ref_edges_nodes).size() == 2) {
             EntityHandle face = tit_faces[ff];
             CHKERR set_parent(*reit, face, refined_ents_ptr, cOre);
             break;
           }
         }
         if (ff < 4)
           continue; // this refined edge is contained by face of tetrahedral
 
         // check if ref edge is in coarse tetrahedral (i.e. that is internal
         // edge of refined tetrahedral)
         if (intersect(tet_nodes, ref_edges_nodes).size() == 2) {
           CHKERR set_parent(*reit, tit, refined_ents_ptr, cOre);
           continue;
         }
 
         // Refined edge is not child of any edge, face or tetrahedral, this is
         // imposible edge
         SETERRQ(m_field.get_comm(), MOFEM_DATA_INCONSISTENCY,
                 "impossible refined edge");
       }
 
       Range ref_faces;
       CHKERR moab.get_adjacencies(ref_tets.data(), nb_new_tets, 2, false,
                                   ref_faces, moab::Interface::UNION);
       Tag th_interface_side;
       const int def_side[] = {0};
       CHKERR moab.tag_get_handle("INTERFACE_SIDE", 1, MB_TYPE_INTEGER,
                                  th_interface_side,
                                  MB_TAG_CREAT | MB_TAG_SPARSE, def_side);
       // Check for all ref faces
       for (auto rfit : ref_faces) {
         Range ref_faces_nodes;
         CHKERR moab.get_connectivity(&rfit, 1, ref_faces_nodes, true);
         // Check if ref face is in coarse face
         int ff = 0;
         for (; ff < 4; ff++) {
           // Check if refined triangle is contained by face of tetrahedral
           if (intersect(faces_nodes[ff], ref_faces_nodes).size() == 3) {
             EntityHandle face = tit_faces[ff];
             CHKERR set_parent(rfit, face, refined_ents_ptr, cOre);
             int side = 0;
             // Set face side if it is on interface
             CHKERR moab.tag_get_data(th_interface_side, &face, 1, &side);
             CHKERR moab.tag_set_data(th_interface_side, &rfit, 1, &side);
             break;
           }
         }
         if (ff < 4)
           continue; // this face is contained by one of tetrahedrons
         // check if ref face is in coarse tetrahedral
         // this is ref face which is contained by tetrahedral volume
         if (intersect(tet_nodes, ref_faces_nodes).size() == 3) {
           CHKERR set_parent(rfit, tit, refined_ents_ptr, cOre);
           continue;
         }
         SETERRQ(m_field.get_comm(), MOFEM_DATA_INCONSISTENCY,
                 "impossible refined face");
       }
     }
   }
 
   if (debug)
     CHKERR check(ref_edges_ptr, refined_ents_ptr, cOre);
   CHKERR set_parent(refined_ents_ptr);
   if (debug)
     CHKERR check(ref_edges_ptr, refined_ents_ptr, cOre);
   CHKERR m_field.getInterface<BitRefManager>()->setBitRefLevel(ents_to_set_bit,
                                                                bit, true, verb);
   if (debug)
     CHKERR check(ref_edges_ptr, refined_ents_ptr, cOre);
 
   MoFEMFunctionReturn(0);
 }

Member Data Documentation

◆ cOre

MoFEM::Core& MoFEM::MeshRefinement::cOre

Definition at line 46 of file MeshRefinement.hpp.

The documentation for this struct was generated from the following files:

src/interfaces/MeshRefinement.hpp
src/interfaces/impl/MeshRefinement.cpp

Public Member Functions

Public Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ MeshRefinement()

◆ ~MeshRefinement()

Member Function Documentation

◆ add_verices_in_the_middel_of_edges() [1/2]

◆ add_verices_in_the_middel_of_edges() [2/2]

◆ add_vertices_in_the_middle_of_edges() [1/2]

◆ add_vertices_in_the_middle_of_edges() [2/2]

◆ query_interface()

◆ refine_MESHSET()

◆ refine_PRISM()

◆ refine_TET() [1/2]

◆ refine_TET() [2/2]

Member Data Documentation

◆ cOre