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Public Member Functions | Protected Attributes | List of all members
MoFEM::OpCalculateVectorFieldValuesFromPetscVecImpl< Tensor_Dim, CTX > Struct Template Reference

Approximate field valuse for given petsc vector. More...

#include <src/finite_elements/UserDataOperators.hpp>

Inheritance diagram for MoFEM::OpCalculateVectorFieldValuesFromPetscVecImpl< Tensor_Dim, CTX >:
[legend]
Collaboration diagram for MoFEM::OpCalculateVectorFieldValuesFromPetscVecImpl< Tensor_Dim, CTX >:
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Public Member Functions

 OpCalculateVectorFieldValuesFromPetscVecImpl (const std::string field_name, boost::shared_ptr< MatrixDouble > data_ptr, const EntityType zero_at_type=MBVERTEX)
 
MoFEMErrorCode doWork (int side, EntityType type, EntitiesFieldData::EntData &data)
 Operator for linear form, usually to calculate values on right hand side. More...
 
- Public Member Functions inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
 UserDataOperator (const FieldSpace space, const char type=OPSPACE, const bool symm=true)
 
 UserDataOperator (const std::string field_name, const char type, const bool symm=true)
 
 UserDataOperator (const std::string row_field_name, const std::string col_field_name, const char type, const bool symm=true)
 
boost::shared_ptr< const NumeredEntFiniteElementgetNumeredEntFiniteElementPtr () const
 Return raw pointer to NumeredEntFiniteElement. More...
 
EntityHandle getFEEntityHandle () const
 Return finite element entity handle. More...
 
int getFEDim () const
 Get dimension of finite element. More...
 
EntityType getFEType () const
 Get dimension of finite element. More...
 
boost::weak_ptr< SideNumbergetSideNumberPtr (const int side_number, const EntityType type)
 Get the side number pointer. More...
 
EntityHandle getSideEntity (const int side_number, const EntityType type)
 Get the side entity. More...
 
int getNumberOfNodesOnElement () const
 Get the number of nodes on finite element. More...
 
MoFEMErrorCode getProblemRowIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 Get row indices. More...
 
MoFEMErrorCode getProblemColIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 Get col indices. More...
 
const FEMethodgetFEMethod () const
 Return raw pointer to Finite Element Method object. More...
 
int getOpType () const
 Get operator types. More...
 
void setOpType (const OpType type)
 Set operator type. More...
 
void addOpType (const OpType type)
 Add operator type. More...
 
int getNinTheLoop () const
 get number of finite element in the loop More...
 
int getLoopSize () const
 get size of elements in the loop More...
 
std::string getFEName () const
 Get name of the element. More...
 
ForcesAndSourcesCoregetPtrFE () const
 
ForcesAndSourcesCoregetSidePtrFE () const
 
ForcesAndSourcesCoregetRefinePtrFE () const
 
const PetscData::SwitchesgetDataCtx () const
 
const KspMethod::KSPContext getKSPCtx () const
 
const SnesMethod::SNESContext getSNESCtx () const
 
const TSMethod::TSContext getTSCtx () const
 
Vec getKSPf () const
 
Mat getKSPA () const
 
Mat getKSPB () const
 
Vec getSNESf () const
 
Vec getSNESx () const
 
Mat getSNESA () const
 
Mat getSNESB () const
 
Vec getTSu () const
 
Vec getTSu_t () const
 
Vec getTSu_tt () const
 
Vec getTSf () const
 
Mat getTSA () const
 
Mat getTSB () const
 
int getTSstep () const
 
double getTStime () const
 
double getTStimeStep () const
 
double getTSa () const
 
double getTSaa () const
 
MatrixDoublegetGaussPts ()
 matrix of integration (Gauss) points for Volume Element More...
 
auto getFTensor0IntegrationWeight ()
 Get integration weights. More...
 
MatrixDoublegetCoordsAtGaussPts ()
 Gauss points and weight, matrix (nb. of points x 3) More...
 
auto getFTensor1CoordsAtGaussPts ()
 Get coordinates at integration points assuming linear geometry. More...
 
double getMeasure () const
 get measure of element More...
 
doublegetMeasure ()
 get measure of element More...
 
MoFEMErrorCode loopSide (const string &fe_name, ForcesAndSourcesCore *side_fe, const size_t dim, const EntityHandle ent_for_side=0, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User call this function to loop over elements on the side of face. This function calls finite element with is operator to do calculations. More...
 
MoFEMErrorCode loopThis (const string &fe_name, ForcesAndSourcesCore *parent_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User call this function to loop over parent elements. This function calls finite element with is operator to do calculations. More...
 
MoFEMErrorCode loopParent (const string &fe_name, ForcesAndSourcesCore *parent_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User call this function to loop over parent elements. This function calls finite element with is operator to do calculations. More...
 
MoFEMErrorCode loopChildren (const string &fe_name, ForcesAndSourcesCore *child_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User call this function to loop over parent elements. This function calls finite element with is operator to do calculations. More...
 
- Public Member Functions inherited from MoFEM::DataOperator
 DataOperator (const bool symm=true)
 
virtual ~DataOperator ()=default
 
virtual MoFEMErrorCode doWork (int row_side, int col_side, EntityType row_type, EntityType col_type, EntitiesFieldData::EntData &row_data, EntitiesFieldData::EntData &col_data)
 Operator for bi-linear form, usually to calculate values on left hand side. More...
 
virtual MoFEMErrorCode opLhs (EntitiesFieldData &row_data, EntitiesFieldData &col_data)
 
virtual MoFEMErrorCode doWork (int side, EntityType type, EntitiesFieldData::EntData &data)
 Operator for linear form, usually to calculate values on right hand side. More...
 
virtual MoFEMErrorCode opRhs (EntitiesFieldData &data, const bool error_if_no_base=false)
 
bool getSymm () const
 Get if operator uses symmetry of DOFs or not. More...
 
void setSymm ()
 set if operator is executed taking in account symmetry More...
 
void unSetSymm ()
 unset if operator is executed for non symmetric problem More...
 

Protected Attributes

boost::shared_ptr< MatrixDoubledataPtr
 
const EntityHandle zeroAtType
 
VectorDouble dotVector
 
- Protected Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
ForcesAndSourcesCoreptrFE
 

Additional Inherited Members

- Public Types inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
enum  OpType {
  OPROW = 1 << 0 , OPCOL = 1 << 1 , OPROWCOL = 1 << 2 , OPSPACE = 1 << 3 ,
  OPLAST = 1 << 3
}
 Controls loop over entities on element. More...
 
- Public Types inherited from MoFEM::DataOperator
using DoWorkLhsHookFunType = boost::function< MoFEMErrorCode(DataOperator *op_ptr, int row_side, int col_side, EntityType row_type, EntityType col_type, EntitiesFieldData::EntData &row_data, EntitiesFieldData::EntData &col_data)>
 
using DoWorkRhsHookFunType = boost::function< MoFEMErrorCode(DataOperator *op_ptr, int side, EntityType type, EntitiesFieldData::EntData &data)>
 
- Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
char opType
 
std::string rowFieldName
 
std::string colFieldName
 
FieldSpace sPace
 
- Public Attributes inherited from MoFEM::DataOperator
DoWorkLhsHookFunType doWorkLhsHook
 
DoWorkRhsHookFunType doWorkRhsHook
 
bool sYmm
 If true assume that matrix is symmetric structure. More...
 
std::array< bool, MBMAXTYPE > doEntities
 If true operator is executed for entity. More...
 
booldoVertices
 \deprectaed If false skip vertices More...
 
booldoEdges
 \deprectaed If false skip edges More...
 
booldoQuads
 \deprectaed More...
 
booldoTris
 \deprectaed More...
 
booldoTets
 \deprectaed More...
 
booldoPrisms
 \deprectaed More...
 
- Static Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
static const char *const OpTypeNames []
 
- Protected Member Functions inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
virtual MoFEMErrorCode setPtrFE (ForcesAndSourcesCore *ptr)
 

Detailed Description

template<int Tensor_Dim, PetscData::DataContext CTX>
struct MoFEM::OpCalculateVectorFieldValuesFromPetscVecImpl< Tensor_Dim, CTX >

Approximate field valuse for given petsc vector.

Note
Look at PetscData to see what vectors could be extarcted with that user data operator.
Examples
EshelbianPlasticity.cpp, approx_sphere.cpp, contact.cpp, free_surface.cpp, and shallow_wave.cpp.

Definition at line 546 of file UserDataOperators.hpp.

Constructor & Destructor Documentation

◆ OpCalculateVectorFieldValuesFromPetscVecImpl()

template<int Tensor_Dim, PetscData::DataContext CTX>
MoFEM::OpCalculateVectorFieldValuesFromPetscVecImpl< Tensor_Dim, CTX >::OpCalculateVectorFieldValuesFromPetscVecImpl ( const std::string  field_name,
boost::shared_ptr< MatrixDouble data_ptr,
const EntityType  zero_at_type = MBVERTEX 
)
inline

Definition at line 549 of file UserDataOperators.hpp.

552 : ForcesAndSourcesCore::UserDataOperator(
553 field_name, ForcesAndSourcesCore::UserDataOperator::OPROW),
554 dataPtr(data_ptr), zeroAtType(zero_at_type) {
555 if (!dataPtr)
556 THROW_MESSAGE("Pointer is not set");
557 }
#define THROW_MESSAGE(msg)
Throw MoFEM exception.
Definition: definitions.h:561
constexpr auto field_name

Member Function Documentation

◆ doWork()

template<int Tensor_Dim, PetscData::DataContext CTX>
MoFEMErrorCode MoFEM::OpCalculateVectorFieldValuesFromPetscVecImpl< Tensor_Dim, CTX >::doWork ( int  side,
EntityType  type,
EntitiesFieldData::EntData data 
)
inlinevirtual

Operator for linear form, usually to calculate values on right hand side.

Reimplemented from MoFEM::DataOperator.

Definition at line 559 of file UserDataOperators.hpp.

560 {
562 auto &local_indices = data.getLocalIndices();
563 const size_t nb_dofs = local_indices.size();
564 const size_t nb_gauss_pts = getGaussPts().size2();
565
566 MatrixDouble &mat = *dataPtr;
567 if (type == zeroAtType) {
568 mat.resize(Tensor_Dim, nb_gauss_pts, false);
569 mat.clear();
570 }
571 if (!nb_dofs)
573
574 const double *array;
575
576 auto get_array = [&](const auto ctx, auto vec) {
578#ifndef NDEBUG
579 if ((getFEMethod()->data_ctx & ctx).none()) {
580 MOFEM_LOG_CHANNEL("SELF");
581 MOFEM_LOG("SELF", Sev::error)
582 << "In this case filed degrees of freedom are read from vector. "
583 "That usually happens when time solver is used, and acces to "
584 "first or second rates is needed. You probably not set ts_u, "
585 "ts_u_t, or ts_u_tt and associated data structure, i.e. "
586 "data_ctx to CTX_SET_X, CTX_SET_X_T, or CTX_SET_X_TT "
587 "respectively";
588 SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY, "Vector not set");
589 }
590#endif
591 CHKERR VecGetArrayRead(vec, &array);
593 };
594
595 auto restore_array = [&](auto vec) {
596 return VecRestoreArrayRead(vec, &array);
597 };
598
599 switch (CTX) {
601 CHKERR get_array(PetscData::CtxSetX, getFEMethod()->ts_u);
602 break;
604 CHKERR get_array(PetscData::CtxSetX_T, getFEMethod()->ts_u_t);
605 break;
607 CHKERR get_array(PetscData::CtxSetX_TT, getFEMethod()->ts_u_tt);
608 break;
609 default:
610 SETERRQ(PETSC_COMM_SELF, MOFEM_NOT_IMPLEMENTED,
611 "That case is not implemented");
612 }
613
614 dotVector.resize(local_indices.size());
615 for (int i = 0; i != local_indices.size(); ++i)
616 if (local_indices[i] != -1)
617 dotVector[i] = array[local_indices[i]];
618 else
619 dotVector[i] = 0;
620
621 switch (CTX) {
623 CHKERR restore_array(getFEMethod()->ts_u);
624 break;
626 CHKERR restore_array(getFEMethod()->ts_u_t);
627 break;
629 CHKERR restore_array(getFEMethod()->ts_u_tt);
630 break;
631 default:
632 SETERRQ(PETSC_COMM_SELF, MOFEM_NOT_IMPLEMENTED,
633 "That case is not implemented");
634 }
635
636 const size_t nb_base_functions = data.getN().size2();
637 auto base_function = data.getFTensor0N();
638 auto values_at_gauss_pts = getFTensor1FromMat<Tensor_Dim>(mat);
639
641 const size_t size = nb_dofs / Tensor_Dim;
642 if (nb_dofs % Tensor_Dim) {
643 SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY, "Data inconsistency");
644 }
645 for (size_t gg = 0; gg != nb_gauss_pts; ++gg) {
646 auto field_data = getFTensor1FromArray<Tensor_Dim, Tensor_Dim>(dotVector);
647 size_t bb = 0;
648 for (; bb != size; ++bb) {
649 values_at_gauss_pts(I) += field_data(I) * base_function;
650 ++field_data;
651 ++base_function;
652 }
653 // Number of dofs can be smaller than number of Tensor_Dim x base
654 // functions
655 for (; bb != nb_base_functions; ++bb)
656 ++base_function;
657 ++values_at_gauss_pts;
658 }
660 }
static Index< 'I', 3 > I
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:447
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:346
@ MOFEM_DATA_INCONSISTENCY
Definition: definitions.h:31
@ MOFEM_NOT_IMPLEMENTED
Definition: definitions.h:32
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:416
#define CHKERR
Inline error check.
Definition: definitions.h:535
#define MOFEM_LOG(channel, severity)
Log.
Definition: LogManager.hpp:301
#define MOFEM_LOG_CHANNEL(channel)
Set and reset channel.
Definition: LogManager.hpp:277
FTensor::Index< 'i', SPACE_DIM > i
UBlasMatrix< double > MatrixDouble
Definition: Types.hpp:77
const FEMethod * getFEMethod() const
Return raw pointer to Finite Element Method object.
MatrixDouble & getGaussPts()
matrix of integration (Gauss) points for Volume Element
static constexpr Switches CtxSetX
Definition: LoopMethods.hpp:39
static constexpr Switches CtxSetX_TT
Definition: LoopMethods.hpp:41
static constexpr Switches CtxSetX_T
Definition: LoopMethods.hpp:40

Member Data Documentation

◆ dataPtr

template<int Tensor_Dim, PetscData::DataContext CTX>
boost::shared_ptr<MatrixDouble> MoFEM::OpCalculateVectorFieldValuesFromPetscVecImpl< Tensor_Dim, CTX >::dataPtr
protected

Definition at line 663 of file UserDataOperators.hpp.

◆ dotVector

template<int Tensor_Dim, PetscData::DataContext CTX>
VectorDouble MoFEM::OpCalculateVectorFieldValuesFromPetscVecImpl< Tensor_Dim, CTX >::dotVector
protected

Definition at line 665 of file UserDataOperators.hpp.

◆ zeroAtType

template<int Tensor_Dim, PetscData::DataContext CTX>
const EntityHandle MoFEM::OpCalculateVectorFieldValuesFromPetscVecImpl< Tensor_Dim, CTX >::zeroAtType
protected

Definition at line 664 of file UserDataOperators.hpp.


The documentation for this struct was generated from the following file: