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Public Types | Public Member Functions | Private Attributes | List of all members
MoFEM::OpPostProcMapInMoab< DIM1, DIM2 > Struct Template Reference

Post post-proc data at points from hash maps. More...

#include <src/post_proc/PostProcBrokenMeshInMoabBase.hpp>

Inheritance diagram for MoFEM::OpPostProcMapInMoab< DIM1, DIM2 >:
[legend]
Collaboration diagram for MoFEM::OpPostProcMapInMoab< DIM1, DIM2 >:
[legend]

Public Types

using DataMapVec = std::map< std::string, boost::shared_ptr< VectorDouble > >
 
using DataMapMat = std::map< std::string, boost::shared_ptr< MatrixDouble > >
 
- Public Types inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
enum  OpType {
  OPROW = 1 << 0 , OPCOL = 1 << 1 , OPROWCOL = 1 << 2 , OPSPACE = 1 << 3 ,
  OPLAST = 1 << 3
}
 Controls loop over entities on element. More...
 
- Public Types inherited from MoFEM::DataOperator
using DoWorkLhsHookFunType = boost::function< MoFEMErrorCode(DataOperator *op_ptr, int row_side, int col_side, EntityType row_type, EntityType col_type, EntitiesFieldData::EntData &row_data, EntitiesFieldData::EntData &col_data)>
 
using DoWorkRhsHookFunType = boost::function< MoFEMErrorCode(DataOperator *op_ptr, int side, EntityType type, EntitiesFieldData::EntData &data)>
 

Public Member Functions

 OpPostProcMapInMoab (moab::Interface &post_proc_mesh, std::vector< EntityHandle > &map_gauss_pts, DataMapVec data_map_scalar, DataMapMat data_map_vec, DataMapMat data_map_mat, DataMapMat data_symm_map_mat)
 Construct a new OpPostProcMapInMoab object. More...
 
MoFEMErrorCode doWork (int side, EntityType type, EntitiesFieldData::EntData &data)
 Operator for linear form, usually to calculate values on right hand side. More...
 
- Public Member Functions inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
 UserDataOperator (const FieldSpace space, const char type=OPSPACE, const bool symm=true)
 
 UserDataOperator (const std::string field_name, const char type, const bool symm=true)
 
 UserDataOperator (const std::string row_field_name, const std::string col_field_name, const char type, const bool symm=true)
 
boost::shared_ptr< const NumeredEntFiniteElementgetNumeredEntFiniteElementPtr () const
 Return raw pointer to NumeredEntFiniteElement. More...
 
EntityHandle getFEEntityHandle () const
 Return finite element entity handle. More...
 
int getFEDim () const
 Get dimension of finite element. More...
 
EntityType getFEType () const
 Get dimension of finite element. More...
 
boost::weak_ptr< SideNumbergetSideNumberPtr (const int side_number, const EntityType type)
 Get the side number pointer. More...
 
EntityHandle getSideEntity (const int side_number, const EntityType type)
 Get the side entity. More...
 
int getNumberOfNodesOnElement () const
 Get the number of nodes on finite element. More...
 
MoFEMErrorCode getProblemRowIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 Get row indices. More...
 
MoFEMErrorCode getProblemColIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 Get col indices. More...
 
const FEMethodgetFEMethod () const
 Return raw pointer to Finite Element Method object. More...
 
int getOpType () const
 Get operator types. More...
 
void setOpType (const OpType type)
 Set operator type. More...
 
void addOpType (const OpType type)
 Add operator type. More...
 
int getNinTheLoop () const
 get number of finite element in the loop More...
 
int getLoopSize () const
 get size of elements in the loop More...
 
std::string getFEName () const
 Get name of the element. More...
 
ForcesAndSourcesCoregetPtrFE () const
 
ForcesAndSourcesCoregetSidePtrFE () const
 
ForcesAndSourcesCoregetRefinePtrFE () const
 
const PetscData::SwitchesgetDataCtx () const
 
const KspMethod::KSPContext getKSPCtx () const
 
const SnesMethod::SNESContext getSNESCtx () const
 
const TSMethod::TSContext getTSCtx () const
 
Vec getKSPf () const
 
Mat getKSPA () const
 
Mat getKSPB () const
 
Vec getSNESf () const
 
Vec getSNESx () const
 
Mat getSNESA () const
 
Mat getSNESB () const
 
Vec getTSu () const
 
Vec getTSu_t () const
 
Vec getTSu_tt () const
 
Vec getTSf () const
 
Mat getTSA () const
 
Mat getTSB () const
 
int getTSstep () const
 
double getTStime () const
 
double getTStimeStep () const
 
double getTSa () const
 
double getTSaa () const
 
MatrixDoublegetGaussPts ()
 matrix of integration (Gauss) points for Volume Element More...
 
auto getFTensor0IntegrationWeight ()
 Get integration weights. More...
 
MatrixDoublegetCoordsAtGaussPts ()
 Gauss points and weight, matrix (nb. of points x 3) More...
 
auto getFTensor1CoordsAtGaussPts ()
 Get coordinates at integration points assuming linear geometry. More...
 
double getMeasure () const
 get measure of element More...
 
doublegetMeasure ()
 get measure of element More...
 
MoFEMErrorCode loopSide (const string &fe_name, ForcesAndSourcesCore *side_fe, const size_t dim, const EntityHandle ent_for_side=0, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User call this function to loop over elements on the side of face. This function calls finite element with is operator to do calculations. More...
 
MoFEMErrorCode loopThis (const string &fe_name, ForcesAndSourcesCore *parent_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User call this function to loop over parent elements. This function calls finite element with is operator to do calculations. More...
 
MoFEMErrorCode loopParent (const string &fe_name, ForcesAndSourcesCore *parent_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User call this function to loop over parent elements. This function calls finite element with is operator to do calculations. More...
 
MoFEMErrorCode loopChildren (const string &fe_name, ForcesAndSourcesCore *child_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User call this function to loop over parent elements. This function calls finite element with is operator to do calculations. More...
 
- Public Member Functions inherited from MoFEM::DataOperator
 DataOperator (const bool symm=true)
 
virtual ~DataOperator ()=default
 
virtual MoFEMErrorCode doWork (int row_side, int col_side, EntityType row_type, EntityType col_type, EntitiesFieldData::EntData &row_data, EntitiesFieldData::EntData &col_data)
 Operator for bi-linear form, usually to calculate values on left hand side. More...
 
virtual MoFEMErrorCode opLhs (EntitiesFieldData &row_data, EntitiesFieldData &col_data)
 
virtual MoFEMErrorCode doWork (int side, EntityType type, EntitiesFieldData::EntData &data)
 Operator for linear form, usually to calculate values on right hand side. More...
 
virtual MoFEMErrorCode opRhs (EntitiesFieldData &data, const bool error_if_no_base=false)
 
bool getSymm () const
 Get if operator uses symmetry of DOFs or not. More...
 
void setSymm ()
 set if operator is executed taking in account symmetry More...
 
void unSetSymm ()
 unset if operator is executed for non symmetric problem More...
 

Private Attributes

moab::Interface & postProcMesh
 
std::vector< EntityHandle > & mapGaussPts
 
DataMapVec dataMapScalar
 
DataMapMat dataMapVec
 
DataMapMat dataMapMat
 
DataMapMat dataMapSymmMat
 

Additional Inherited Members

- Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
char opType
 
std::string rowFieldName
 
std::string colFieldName
 
FieldSpace sPace
 
- Public Attributes inherited from MoFEM::DataOperator
DoWorkLhsHookFunType doWorkLhsHook
 
DoWorkRhsHookFunType doWorkRhsHook
 
bool sYmm
 If true assume that matrix is symmetric structure. More...
 
std::array< bool, MBMAXTYPE > doEntities
 If true operator is executed for entity. More...
 
booldoVertices
 \deprectaed If false skip vertices More...
 
booldoEdges
 \deprectaed If false skip edges More...
 
booldoQuads
 \deprectaed More...
 
booldoTris
 \deprectaed More...
 
booldoTets
 \deprectaed More...
 
booldoPrisms
 \deprectaed More...
 
- Static Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
static const char *const OpTypeNames []
 
- Protected Member Functions inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
virtual MoFEMErrorCode setPtrFE (ForcesAndSourcesCore *ptr)
 
- Protected Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
ForcesAndSourcesCoreptrFE
 

Detailed Description

template<int DIM1, int DIM2>
struct MoFEM::OpPostProcMapInMoab< DIM1, DIM2 >

Post post-proc data at points from hash maps.

Template Parameters
DIM1dimension of vector in data_map_vec and first column of data_map_may
DIM2dimension of second column in data_map_mat
Examples
approx_sphere.cpp, eigen_elastic.cpp, elasticity_mixed_formulation.cpp, free_surface.cpp, heat_equation.cpp, heat_method.cpp, helmholtz.cpp, level_set.cpp, mixed_poisson.cpp, navier_stokes.cpp, nonlinear_elastic.cpp, operators_tests.cpp, phase.cpp, photon_diffusion.cpp, plastic.cpp, plate.cpp, plot_base.cpp, poisson_2d_dis_galerkin.cpp, poisson_2d_homogeneous.cpp, poisson_3d_homogeneous.cpp, reaction_diffusion.cpp, scalar_check_approximation.cpp, shallow_wave.cpp, simple_elasticity.cpp, thermo_elastic.cpp, and wave_equation.cpp.

Definition at line 666 of file PostProcBrokenMeshInMoabBase.hpp.

Member Typedef Documentation

◆ DataMapMat

template<int DIM1, int DIM2>
using MoFEM::OpPostProcMapInMoab< DIM1, DIM2 >::DataMapMat = std::map<std::string, boost::shared_ptr<MatrixDouble> >

Definition at line 669 of file PostProcBrokenMeshInMoabBase.hpp.

◆ DataMapVec

template<int DIM1, int DIM2>
using MoFEM::OpPostProcMapInMoab< DIM1, DIM2 >::DataMapVec = std::map<std::string, boost::shared_ptr<VectorDouble> >

Definition at line 668 of file PostProcBrokenMeshInMoabBase.hpp.

Constructor & Destructor Documentation

◆ OpPostProcMapInMoab()

template<int DIM1, int DIM2>
MoFEM::OpPostProcMapInMoab< DIM1, DIM2 >::OpPostProcMapInMoab ( moab::Interface &  post_proc_mesh,
std::vector< EntityHandle > &  map_gauss_pts,
DataMapVec  data_map_scalar,
DataMapMat  data_map_vec,
DataMapMat  data_map_mat,
DataMapMat  data_symm_map_mat 
)
inline

Construct a new OpPostProcMapInMoab object.

Parameters
post_proc_meshpostprocessing mesh
map_gauss_ptsmap of gauss points to nodes of postprocessing mesh
data_map_scalarhash map of scalar values (string is name of the tag)
data_map_vechash map of vector values
data_map_mathash map of second order tensor values
data_symm_map_mathash map of symmetric second order tensor values

Definition at line 682 of file PostProcBrokenMeshInMoabBase.hpp.

686 : ForcesAndSourcesCore::UserDataOperator(
687 NOSPACE, ForcesAndSourcesCore::UserDataOperator::OPSPACE),
688 postProcMesh(post_proc_mesh), mapGaussPts(map_gauss_pts),
689 dataMapScalar(data_map_scalar), dataMapVec(data_map_vec),
690 dataMapMat(data_map_mat), dataMapSymmMat(data_symm_map_mat) {
691 // Operator is only executed for vertices
692 std::fill(&doEntities[MBEDGE], &doEntities[MBMAXTYPE], false);
693 }
@ NOSPACE
Definition: definitions.h:83
std::array< bool, MBMAXTYPE > doEntities
If true operator is executed for entity.
DataMapMat dataMapMat
DataMapMat dataMapVec
DataMapMat dataMapSymmMat
moab::Interface & postProcMesh
std::vector< EntityHandle > & mapGaussPts
DataMapVec dataMapScalar

Member Function Documentation

◆ doWork()

template<int DIM1, int DIM2>
MoFEMErrorCode MoFEM::OpPostProcMapInMoab< DIM1, DIM2 >::doWork ( int  side,
EntityType  type,
EntitiesFieldData::EntData data 
)
virtual

Operator for linear form, usually to calculate values on right hand side.

Reimplemented from MoFEM::DataOperator.

Definition at line 708 of file PostProcBrokenMeshInMoabBase.hpp.

709 {
711
712 std::array<double, 9> def;
713 std::fill(def.begin(), def.end(), 0);
714
715 auto get_tag = [&](const std::string name, size_t size) {
716 Tag th;
717 CHKERR postProcMesh.tag_get_handle(name.c_str(), size, MB_TYPE_DOUBLE, th,
718 MB_TAG_CREAT | MB_TAG_SPARSE,
719 def.data());
720 return th;
721 };
722
723 MatrixDouble3by3 mat(3, 3);
724
725 auto set_vector_3d = [&](auto &t) -> MatrixDouble3by3 & {
726 mat.clear();
727 for (size_t r = 0; r != DIM1; ++r)
728 mat(0, r) = t(r);
729 return mat;
730 };
731
732 auto set_matrix_3d = [&](auto &t) -> MatrixDouble3by3 & {
733 mat.clear();
734 for (size_t r = 0; r != DIM1; ++r)
735 for (size_t c = 0; c != DIM2; ++c)
736 mat(r, c) = t(r, c);
737 return mat;
738 };
739
740 auto set_matrix_symm_3d = [&](auto &t) -> MatrixDouble3by3 & {
741 mat.clear();
742 for (size_t r = 0; r != DIM1; ++r)
743 for (size_t c = 0; c != DIM1; ++c)
744 mat(r, c) = t(r, c);
745 return mat;
746 };
747
748 auto set_scalar = [&](auto t) -> MatrixDouble3by3 & {
749 mat.clear();
750 mat(0, 0) = t;
751 return mat;
752 };
753
754 auto set_float_precision = [](const double x) {
755 if (std::abs(x) < std::numeric_limits<float>::epsilon())
756 return 0.;
757 else
758 return x;
759 };
760
761 auto set_tag = [&](auto th, auto gg, MatrixDouble3by3 &mat) {
762 for (auto &v : mat.data())
763 v = set_float_precision(v);
764 return postProcMesh.tag_set_data(th, &mapGaussPts[gg], 1,
765 &*mat.data().begin());
766 };
767
768 for (auto &m : dataMapScalar) {
769 auto th = get_tag(m.first, 1);
770 auto t_scl = getFTensor0FromVec(*m.second);
771 auto nb_integration_pts = getGaussPts().size2();
772 size_t gg = 0;
773 for (int gg = 0; gg != nb_integration_pts; ++gg) {
774 CHKERR set_tag(th, gg, set_scalar(t_scl));
775 ++t_scl;
776 }
777 }
778
779 for (auto &m : dataMapVec) {
780 auto th = get_tag(m.first, 3);
781 auto t_vec = getFTensor1FromMat<DIM1>(*m.second);
782 auto nb_integration_pts = getGaussPts().size2();
783 size_t gg = 0;
784 for (int gg = 0; gg != nb_integration_pts; ++gg) {
785 CHKERR set_tag(th, gg, set_vector_3d(t_vec));
786 ++t_vec;
787 }
788 }
789
790 for (auto &m : dataMapMat) {
791 auto th = get_tag(m.first, 9);
792 auto t_mat = getFTensor2FromMat<DIM1, DIM2>(*m.second);
793 auto nb_integration_pts = getGaussPts().size2();
794 size_t gg = 0;
795 for (int gg = 0; gg != nb_integration_pts; ++gg) {
796 CHKERR set_tag(th, gg, set_matrix_3d(t_mat));
797 ++t_mat;
798 }
799 }
800
801 for (auto &m : dataMapSymmMat) {
802 auto th = get_tag(m.first, 9);
803 auto t_mat = getFTensor2SymmetricFromMat<DIM1>(*m.second);
804 auto nb_integration_pts = getGaussPts().size2();
805 size_t gg = 0;
806 for (int gg = 0; gg != nb_integration_pts; ++gg) {
807 CHKERR set_tag(th, gg, set_matrix_symm_3d(t_mat));
808 ++t_mat;
809 }
810 }
811
813}
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:346
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:416
#define CHKERR
Inline error check.
Definition: definitions.h:535
FTensor::Index< 'm', SPACE_DIM > m
const double c
speed of light (cm/ns)
const double v
phase velocity of light in medium (cm/ns)
MatrixBoundedArray< double, 9 > MatrixDouble3by3
Definition: Types.hpp:105
static auto getFTensor0FromVec(ublas::vector< T, A > &data)
Get tensor rank 0 (scalar) form data vector.
Definition: Templates.hpp:135
const double r
rate factor
constexpr double t
plate stiffness
Definition: plate.cpp:59
MatrixDouble & getGaussPts()
matrix of integration (Gauss) points for Volume Element

Member Data Documentation

◆ dataMapMat

template<int DIM1, int DIM2>
DataMapMat MoFEM::OpPostProcMapInMoab< DIM1, DIM2 >::dataMapMat
private

Definition at line 702 of file PostProcBrokenMeshInMoabBase.hpp.

◆ dataMapScalar

template<int DIM1, int DIM2>
DataMapVec MoFEM::OpPostProcMapInMoab< DIM1, DIM2 >::dataMapScalar
private

Definition at line 700 of file PostProcBrokenMeshInMoabBase.hpp.

◆ dataMapSymmMat

template<int DIM1, int DIM2>
DataMapMat MoFEM::OpPostProcMapInMoab< DIM1, DIM2 >::dataMapSymmMat
private

Definition at line 703 of file PostProcBrokenMeshInMoabBase.hpp.

◆ dataMapVec

template<int DIM1, int DIM2>
DataMapMat MoFEM::OpPostProcMapInMoab< DIM1, DIM2 >::dataMapVec
private

Definition at line 701 of file PostProcBrokenMeshInMoabBase.hpp.

◆ mapGaussPts

template<int DIM1, int DIM2>
std::vector<EntityHandle>& MoFEM::OpPostProcMapInMoab< DIM1, DIM2 >::mapGaussPts
private

Definition at line 699 of file PostProcBrokenMeshInMoabBase.hpp.

◆ postProcMesh

template<int DIM1, int DIM2>
moab::Interface& MoFEM::OpPostProcMapInMoab< DIM1, DIM2 >::postProcMesh
private

Definition at line 698 of file PostProcBrokenMeshInMoabBase.hpp.


The documentation for this struct was generated from the following file: