Simple interface for fast problem set-up. More...

#include <src/interfaces/Simple.hpp>

Inheritance diagram for MoFEM::Simple:

Collaboration diagram for MoFEM::Simple:

Public Member Functions
MoFEMErrorCode	query_interface (const MOFEMuuid &uuid, UnknownInterface **iface) const

	Simple (const MoFEM::Core &core)

	~Simple ()
	Destructor. More...

MoFEMErrorCode	getOptions ()
	get options More...

MoFEMErrorCode	loadFile (const std::string options="PARALLEL=READ_PART;" "PARALLEL_RESOLVE_SHARED_ENTS;" "PARTITION=PARALLEL_PARTITION;")
	Load mesh file. More...

MoFEMErrorCode	addDomainField (const std::string &name, const FieldSpace space, const FieldApproximationBase base, const FieldCoefficientsNumber nb_of_coefficients, const TagType tag_type=MB_TAG_SPARSE, const enum MoFEMTypes bh=MF_ZERO, int verb=-1)
	Add field on domain. More...

MoFEMErrorCode	addBoundaryField (const std::string &name, const FieldSpace space, const FieldApproximationBase base, const FieldCoefficientsNumber nb_of_coefficients, const TagType tag_type=MB_TAG_SPARSE, const enum MoFEMTypes bh=MF_ZERO, int verb=-1)
	Add field on boundary. More...

MoFEMErrorCode	addSkeletonField (const std::string &name, const FieldSpace space, const FieldApproximationBase base, const FieldCoefficientsNumber nb_of_coefficients, const TagType tag_type=MB_TAG_SPARSE, const enum MoFEMTypes bh=MF_ZERO, int verb=-1)
	Add field on skeleton. More...

MoFEMErrorCode	addDataField (const std::string &name, const FieldSpace space, const FieldApproximationBase base, const FieldCoefficientsNumber nb_of_coefficients, const TagType tag_type=MB_TAG_SPARSE, const enum MoFEMTypes bh=MF_ZERO, int verb=-1)
	Add field on domain. More...

MoFEMErrorCode	defineFiniteElements ()
	Define finite elements. More...

MoFEMErrorCode	defineProblem (const PetscBool is_partitioned=PETSC_TRUE)
	define problem More...

MoFEMErrorCode	setFieldOrder (const std::string field_name, const int order, const Range *ents=NULL)
	Set field order. More...

MoFEMErrorCode	buildFields ()
	Build fields. More...

MoFEMErrorCode	buildFiniteElements ()
	Build finite elements. More...

MoFEMErrorCode	buildProblem ()
	Build problem. More...

MoFEMErrorCode	setUp (const PetscBool is_partitioned=PETSC_TRUE)
	Setup problem. More...

MoFEMErrorCode	getDM (DM *dm)
	Get DM. More...

SmartPetscObj< DM >	getDM ()
	Return smart DM object. More...

int	getDim () const

const std::string	getDomainFEName () const

const std::string	getBoundaryFEName () const

const std::string	getSkeletonFEName () const

const std::string	getProblemName () const

std::string &	getDomainFEName ()

std::string &	getBoundaryFEName ()

std::string &	getSkeletonFEName ()

std::string &	getProblemName ()

std::vector< std::string > &	getOtherFiniteElements ()

Public Member Functions inherited from MoFEM::UnknownInterface
template<class IFACE >
MoFEMErrorCode	registerInterface (const MOFEMuuid &uuid, bool error_if_registration_failed=true)
	Register interface. More...

template<class IFACE , bool VERIFY = false>
MoFEMErrorCode	getInterface (const MOFEMuuid &uuid, IFACE *&iface) const
	Get interface by uuid and return reference to pointer of interface. More...

template<class IFACE >
MoFEMErrorCode	getInterface (IFACE *&iface) const
	Get interface refernce to pointer of interface. More...

template<class IFACE >
MoFEMErrorCode	getInterface (IFACE **const iface) const
	Get interface pointer to pointer of interface. More...

template<class IFACE , typename boost::enable_if< boost::is_pointer< IFACE >, int >::type = 0>
IFACE	getInterface () const
	Get interface pointer to pointer of interface. More...

template<class IFACE , typename boost::enable_if< boost::is_reference< IFACE >, int >::type = 0>
IFACE	getInterface () const
	Get reference to interface. More...

template<class IFACE >
IFACE *	getInterface () const
	Function returning pointer to interface. More...

virtual	~UnknownInterface ()=default

virtual MoFEMErrorCode	getLibVersion (Version &version) const
	Get library version. More...

virtual const MoFEMErrorCode	getFileVersion (moab::Interface &moab, Version &version) const
	Get database major version. More...

virtual MoFEMErrorCode	getInterfaceVersion (Version &version) const
	Get database major version. More...

template<>
MoFEMErrorCode	getInterface (const MOFEMuuid &uuid, UnknownInterface *&iface) const

Public Attributes
MoFEM::Core &	cOre

Private Attributes
const BitRefLevel	bitLevel

PetscLogEvent	MOFEM_EVENT_SimpleLoadMesh

PetscLogEvent	MOFEM_EVENT_SimpleBuildFields

PetscLogEvent	MOFEM_EVENT_SimpleBuildFiniteElements

PetscLogEvent	MOFEM_EVENT_SimpleBuildProblem

PetscLogEvent	MOFEM_EVENT_SimpleKSPSolve

EntityHandle	meshSet
	domain meshset More...

EntityHandle	boundaryMeshset
	meshset with boundary More...

std::vector< std::string >	domainFields
	domain fields More...

std::vector< std::string >	boundaryFields
	boundary fields More...

std::vector< std::string >	skeletonFields
	fields on the skeleton More...

std::vector< std::string >	dataFields
	Data fields. More...

std::map< std::string, std::pair< int, Range > >	fieldsOrder
	fields order More...

std::string	nameOfProblem
	problem name More...

std::string	domainFE
	domain finite element More...

std::string	boundaryFE
	boundary finite element More...

std::string	skeletonFE
	skeleton finite element More...

std::vector< std::string >	otherFEs
	Other finite elements. More...

char	meshFileName [255]
	mesh file name More...

int	dIm
	dimension of problem More...

SmartPetscObj< DM >	dM

Additional Inherited Members
Protected Member Functions inherited from MoFEM::UnknownInterface
boost::typeindex::type_index	getClassIdx (const MOFEMuuid &uid) const
	Get type name for interface Id. More...

MOFEMuuid	getUId (const boost::typeindex::type_index &class_idx) const
	Get interface Id for class name. More...

Detailed Description

Simple interface for fast problem set-up.

Examples: boundary_marker.cpp, continuity_check_on_skeleton_with_simple_2d.cpp, field_blas_set_vertex_dofs.cpp, field_evaluator.cpp, hello_world.cpp, loop_entities.cpp, mesh_smoothing.cpp, reaction_diffusion_equation.cpp, simple_elasticity.cpp, simple_interface.cpp, testing_jacobian_of_hook_element.cpp, and testing_jacobian_of_hook_scaled_with_density_element.cpp.

Definition at line 36 of file Simple.hpp.

Constructor & Destructor Documentation

◆ Simple()

MoFEM::Simple::Simple ( const MoFEM::Core & core )

Definition at line 34 of file Simple.cpp.

     : cOre(const_cast<Core &>(core)), bitLevel(BitRefLevel().set(0)),
       meshSet(0), boundaryMeshset(0), nameOfProblem("SimpleProblem"),
       domainFE("dFE"), boundaryFE("bFE"), skeletonFE("sFE"), dIm(-1) {
   PetscLogEventRegister("LoadMesh", 0, &MOFEM_EVENT_SimpleLoadMesh);
   PetscLogEventRegister("buildFields", 0, &MOFEM_EVENT_SimpleBuildFields);
   PetscLogEventRegister("buildFiniteElements", 0,
                         &MOFEM_EVENT_SimpleBuildFiniteElements);
   PetscLogEventRegister("SimpleSetUp", 0, &MOFEM_EVENT_SimpleBuildProblem);
   PetscLogEventRegister("SimpleKSPSolve", 0, &MOFEM_EVENT_SimpleKSPSolve);
   strcpy(meshFileName, "mesh.h5m");
 }

◆ ~Simple()

MoFEM::Simple::~Simple ( )

Destructor.

Definition at line 46 of file Simple.cpp.

46 {}

Member Function Documentation

◆ addBoundaryField()

MoFEMErrorCode MoFEM::Simple::addBoundaryField	(	const std::string &	name,
		const FieldSpace	space,
		const FieldApproximationBase	base,
		const FieldCoefficientsNumber	nb_of_coefficients,
		const TagType	tag_type = `MB_TAG_SPARSE`,
		const enum MoFEMTypes	bh = `MF_ZERO`,
		int	verb = `-1`
	)

Add field on boundary.

Parameters

name	name of the filed
space	space (L2,H1,Hdiv,Hcurl)
base	approximation base, see FieldApproximationBase
nb_of_coefficients	number of field coefficients
tag_type	type of the tag MB_TAG_DENSE or MB_TAG_SPARSE (DENSE is faster and uses less memory, SPARSE is more flexible if you define field on subdomains)
bh	if MF_EXCL throws error if field exits, MF_ZERO no error if field exist
verb	verbosity level

Returns: error code

Examples: hello_world.cpp, mesh_smoothing.cpp, and simple_interface.cpp.

Definition at line 116 of file Simple.cpp.

                                    {
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
   CHKERR m_field.add_field(name, space, base, nb_of_cooficients, tag_type, bh,
                            verb);
   boundaryFields.push_back(name);
   MoFEMFunctionReturn(0);
 }

◆ addDataField()

MoFEMErrorCode MoFEM::Simple::addDataField	(	const std::string &	name,
		const FieldSpace	space,
		const FieldApproximationBase	base,
		const FieldCoefficientsNumber	nb_of_coefficients,
		const TagType	tag_type = `MB_TAG_SPARSE`,
		const enum MoFEMTypes	bh = `MF_ZERO`,
		int	verb = `-1`
	)

Add field on domain.

Parameters

name	name of the filed
space	space (L2,H1,Hdiv,Hcurl)
base	approximation base, see FieldApproximationBase
nb_of_coefficients	number of field coefficients
tag_type	type of the tag MB_TAG_DENSE or MB_TAG_SPARSE (DENSE is faster and uses less memory, SPARSE is more flexible if you define field on subdomains)
bh	if MF_EXCL throws error if field exits, MF_ZERO no error if field exist
verb	verbosity level

Returns: error code

Definition at line 145 of file Simple.cpp.

                                {
 
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
   CHKERR m_field.add_field(name, space, base, nb_of_cooficients, tag_type, bh,
                            verb);
   dataFields.push_back(name);
   MoFEMFunctionReturn(0);
 }

◆ addDomainField()

MoFEMErrorCode MoFEM::Simple::addDomainField	(	const std::string &	name,
		const FieldSpace	space,
		const FieldApproximationBase	base,
		const FieldCoefficientsNumber	nb_of_coefficients,
		const TagType	tag_type = `MB_TAG_SPARSE`,
		const enum MoFEMTypes	bh = `MF_ZERO`,
		int	verb = `-1`
	)

Add field on domain.

Parameters

name	name of the filed
space	space (L2,H1,Hdiv,Hcurl)
base	approximation base, see FieldApproximationBase
nb_of_coefficients	number of field coefficients
tag_type	type of the tag MB_TAG_DENSE or MB_TAG_SPARSE (DENSE is faster and uses less memory, SPARSE is more flexible if you define field on subdomains)
bh	if MF_EXCL throws error if field exits, MF_ZERO no error if field exist
verb	verbosity level

Returns: error code

Examples: continuity_check_on_skeleton_with_simple_2d.cpp, field_blas_set_vertex_dofs.cpp, field_evaluator.cpp, hello_world.cpp, loop_entities.cpp, mesh_smoothing.cpp, reaction_diffusion_equation.cpp, simple_elasticity.cpp, simple_interface.cpp, testing_jacobian_of_hook_element.cpp, and testing_jacobian_of_hook_scaled_with_density_element.cpp.

Definition at line 101 of file Simple.cpp.

                                  {
 
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
   CHKERR m_field.add_field(name, space, base, nb_of_cooficients, tag_type, bh,
                            verb);
   domainFields.push_back(name);
   MoFEMFunctionReturn(0);
 }

◆ addSkeletonField()

MoFEMErrorCode MoFEM::Simple::addSkeletonField	(	const std::string &	name,
		const FieldSpace	space,
		const FieldApproximationBase	base,
		const FieldCoefficientsNumber	nb_of_coefficients,
		const TagType	tag_type = `MB_TAG_SPARSE`,
		const enum MoFEMTypes	bh = `MF_ZERO`,
		int	verb = `-1`
	)

Add field on skeleton.

Parameters

name	name of the filed
space	space (L2,H1,Hdiv,Hcurl)
base	approximation base, see FieldApproximationBase
nb_of_coefficients	number of field coefficients
tag_type	type of the tag MB_TAG_DENSE or MB_TAG_SPARSE (DENSE is faster and uses less memory, SPARSE is more flexible if you define field on subdomains)
bh	if MF_EXCL throws error if field exits, MF_ZERO no error if field exist
verb	verbosity level

Returns: error code

Examples: continuity_check_on_skeleton_with_simple_2d.cpp, and hello_world.cpp.

Definition at line 130 of file Simple.cpp.

                                    {
 
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
   CHKERR m_field.add_field(name, space, base, nb_of_cooficients, tag_type, bh,
                            verb);
   skeletonFields.push_back(name);
   MoFEMFunctionReturn(0);
 }

◆ buildFields()

MoFEMErrorCode MoFEM::Simple::buildFields ( )

Build fields.

Returns: error code

Examples: field_blas_set_vertex_dofs.cpp, mesh_smoothing.cpp, and simple_elasticity.cpp.

Definition at line 264 of file Simple.cpp.

                                    {
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
   PetscLogEventBegin(MOFEM_EVENT_SimpleBuildFields, 0, 0, 0, 0);
   // take skin
   {
     Range domain_ents;
     CHKERR m_field.get_moab().get_entities_by_dimension(meshSet, dIm,
                                                         domain_ents, true);
     Skinner skin(&m_field.get_moab());
     Range domain_skin;
     CHKERR skin.find_skin(0, domain_ents, false, domain_skin);
     // filter not owned entities, those are not on boundary
     ParallelComm *pcomm =
         ParallelComm::get_pcomm(&m_field.get_moab(), MYPCOMM_INDEX);
     Range proc_domain_skin;
     CHKERR pcomm->filter_pstatus(domain_skin,
                                  PSTATUS_SHARED | PSTATUS_MULTISHARED,
                                  PSTATUS_NOT, -1, &proc_domain_skin);
     // create boundary meshset
     if (boundaryMeshset != 0) {
       CHKERR m_field.get_moab().delete_entities(&boundaryMeshset, 1);
     }
     CHKERR m_field.get_moab().create_meshset(MESHSET_SET, boundaryMeshset);
     CHKERR m_field.get_moab().add_entities(boundaryMeshset, proc_domain_skin);
     for (int dd = 0; dd != dIm - 1; dd++) {
       Range adj;
       CHKERR m_field.get_moab().get_adjacencies(proc_domain_skin, dd, false,
                                                 adj, moab::Interface::UNION);
       CHKERR m_field.get_moab().add_entities(boundaryMeshset, adj);
     }
   }
   auto comm_interface_ptr = m_field.getInterface<CommInterface>();
   // Add entities to the fields
   for (unsigned int ff = 0; ff != domainFields.size(); ff++) {
     CHKERR m_field.add_ents_to_field_by_dim(meshSet, dIm, domainFields[ff]);
     CHKERR comm_interface_ptr->synchroniseFieldEntities(domainFields[ff], 0);
   }
   for (unsigned int ff = 0; ff != dataFields.size(); ff++) {
     CHKERR m_field.add_ents_to_field_by_dim(meshSet, dIm, dataFields[ff]);
     CHKERR comm_interface_ptr->synchroniseFieldEntities(dataFields[ff], 0);
   }
   for (unsigned int ff = 0; ff != boundaryFields.size(); ff++) {
     CHKERR m_field.add_ents_to_field_by_dim(boundaryMeshset, dIm - 1,
                                             boundaryFields[ff]);
     CHKERR comm_interface_ptr->synchroniseFieldEntities(boundaryFields[ff], 0);
   }
   for (unsigned int ff = 0; ff != skeletonFields.size(); ff++) {
     CHKERR m_field.add_ents_to_field_by_dim(meshSet, dIm - 1,
                                             skeletonFields[ff]);
     CHKERR comm_interface_ptr->synchroniseFieldEntities(skeletonFields[ff], 0);
   }
   // Set order
   for (unsigned int ff = 0; ff != domainFields.size(); ff++) {
     if (fieldsOrder.find(domainFields[ff]) == fieldsOrder.end()) {
       SETERRQ1(PETSC_COMM_WORLD, MOFEM_INVALID_DATA,
                "Order for field not set %s", domainFields[ff].c_str());
     }
     int dds = 0;
     const Field *field = m_field.get_field_structure(domainFields[ff]);
     switch (field->getSpace()) {
     case L2:
       dds = dIm;
       break;
     case HDIV:
       dds = 2;
       break;
     case HCURL:
       dds = 1;
       break;
     case H1:
       dds = 1;
       break;
     default:
       SETERRQ(PETSC_COMM_WORLD, MOFEM_DATA_INCONSISTENCY,
               "Huston we have a problem");
     }
     if (field->getSpace() == H1) {
       CHKERR m_field.set_field_order(meshSet, MBVERTEX, domainFields[ff], 1);
     }
     for (int dd = dds; dd <= dIm; dd++) {
       Range ents;
       CHKERR m_field.get_field_entities_by_dimension(domainFields[ff], dd,
                                                      ents);
       if (!fieldsOrder.at(domainFields[ff]).second.empty()) {
         ents = intersect(ents, fieldsOrder.at(domainFields[ff]).second);
       }
       CHKERR m_field.set_field_order(ents, domainFields[ff],
                                      fieldsOrder.at(domainFields[ff]).first);
     }
   }
   // Set order to data fields
   for (unsigned int ff = 0; ff != dataFields.size(); ff++) {
     if (fieldsOrder.find(dataFields[ff]) == fieldsOrder.end()) {
       SETERRQ1(PETSC_COMM_WORLD, MOFEM_INVALID_DATA,
                "Order for field not set %s", dataFields[ff].c_str());
     }
     int dds = 0;
     const Field *field = m_field.get_field_structure(dataFields[ff]);
     switch (field->getSpace()) {
     case L2:
       dds = dIm;
       break;
     case HDIV:
       dds = 2;
       break;
     case HCURL:
       dds = 1;
       break;
     case H1:
       dds = 1;
       break;
     default:
       SETERRQ(PETSC_COMM_WORLD, MOFEM_DATA_INCONSISTENCY,
               "Huston we have a problem");
     }
     if (field->getSpace() == H1) {
       CHKERR m_field.set_field_order(meshSet, MBVERTEX, dataFields[ff], 1);
     }
     for (int dd = dds; dd <= dIm; dd++) {
       Range ents;
       CHKERR m_field.get_field_entities_by_dimension(dataFields[ff], dd, ents);
       CHKERR m_field.set_field_order(ents, dataFields[ff],
                                      fieldsOrder.at(dataFields[ff]).first);
     }
   }
   // Set order to boundary
   for (unsigned int ff = 0; ff != boundaryFields.size(); ff++) {
     if (fieldsOrder.find(boundaryFields[ff]) == fieldsOrder.end()) {
       SETERRQ1(PETSC_COMM_WORLD, MOFEM_INVALID_DATA,
                "Order for field not set %s", boundaryFields[ff].c_str());
     }
     int dds = 0;
     const Field *field = m_field.get_field_structure(boundaryFields[ff]);
     switch (field->getSpace()) {
     case L2:
       dds = dIm - 1;
       break;
     case HDIV:
       dds = 2;
       break;
     case HCURL:
       dds = 1;
       break;
     case H1:
       dds = 1;
       break;
     default:
       SETERRQ(PETSC_COMM_WORLD, MOFEM_DATA_INCONSISTENCY,
               "Huston we have a problem");
     }
     if (field->getSpace() == H1) {
       CHKERR m_field.set_field_order(meshSet, MBVERTEX, boundaryFields[ff], 1);
     }
     for (int dd = dds; dd <= dIm - 1; dd++) {
       Range ents;
       CHKERR m_field.get_field_entities_by_dimension(boundaryFields[ff], dd,
                                                      ents);
       CHKERR m_field.set_field_order(ents, boundaryFields[ff],
                                      fieldsOrder.at(boundaryFields[ff]).first);
     }
   }
   // Set order to skeleton
   for (unsigned int ff = 0; ff != skeletonFields.size(); ff++) {
     if (fieldsOrder.find(skeletonFields[ff]) == fieldsOrder.end()) {
       SETERRQ1(PETSC_COMM_WORLD, MOFEM_INVALID_DATA,
                "Order for field not set %s", skeletonFields[ff].c_str());
     }
     int dds = 0;
     const Field *field = m_field.get_field_structure(skeletonFields[ff]);
     switch (field->getSpace()) {
     case L2:
       dds = dIm - 1;
       break;
     case HDIV:
       dds = 2;
       break;
     case HCURL:
       dds = 1;
       break;
     case H1:
       dds = 1;
       break;
     default:
       SETERRQ(PETSC_COMM_WORLD, MOFEM_DATA_INCONSISTENCY,
               "Huston we have a problem");
     }
     if (field->getSpace() == H1) {
       CHKERR m_field.set_field_order(meshSet, MBVERTEX, skeletonFields[ff], 1);
     }
     for (int dd = dds; dd <= dIm - 1; dd++) {
       Range ents;
       CHKERR m_field.get_field_entities_by_dimension(skeletonFields[ff], dd,
                                                      ents);
       CHKERR m_field.set_field_order(ents, skeletonFields[ff],
                                      fieldsOrder.at(skeletonFields[ff]).first);
     }
   }
   // Build fields
   CHKERR m_field.build_fields();
   PetscLogEventEnd(MOFEM_EVENT_SimpleBuildFields, 0, 0, 0, 0);
   MoFEMFunctionReturn(0);
 }

◆ buildFiniteElements()

MoFEMErrorCode MoFEM::Simple::buildFiniteElements ( )

Build finite elements.

Returns: error code

Examples: mesh_smoothing.cpp, and simple_elasticity.cpp.

Definition at line 468 of file Simple.cpp.

                                            {
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
   PetscLogEventBegin(MOFEM_EVENT_SimpleBuildFiniteElements, 0, 0, 0, 0);
   // Add finite elements
   CHKERR m_field.add_ents_to_finite_element_by_dim(meshSet, dIm, domainFE,
                                                    true);
   CHKERR m_field.build_finite_elements(domainFE);
   if (!boundaryFields.empty()) {
     CHKERR m_field.add_ents_to_finite_element_by_dim(boundaryMeshset, dIm - 1,
                                                      boundaryFE, true);
     CHKERR m_field.build_finite_elements(boundaryFE);
   }
   if (!skeletonFields.empty()) {
     CHKERR m_field.add_ents_to_finite_element_by_dim(meshSet, dIm - 1,
                                                      skeletonFE, true);
     CHKERR m_field.build_finite_elements(skeletonFE);
   }
   for (std::vector<std::string>::iterator fit = otherFEs.begin();
        fit != otherFEs.end(); ++fit) {
     CHKERR m_field.build_finite_elements(*fit);
   }
   PetscLogEventEnd(MOFEM_EVENT_SimpleBuildFiniteElements, 0, 0, 0, 0);
   MoFEMFunctionReturn(0);
 }

◆ buildProblem()

MoFEMErrorCode MoFEM::Simple::buildProblem ( )

Build problem.

Returns: error code

Examples: mesh_smoothing.cpp, and simple_elasticity.cpp.

Definition at line 494 of file Simple.cpp.

                                     {
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
   PetscLogEventBegin(MOFEM_EVENT_SimpleBuildProblem, 0, 0, 0, 0);
   CHKERR m_field.build_adjacencies(bitLevel);
   // Set problem by the DOFs on the fields rather that by adding DOFs on the
   // elements
   m_field.getInterface<ProblemsManager>()->buildProblemFromFields = PETSC_TRUE;
   CHKERR DMSetUp(dM);
   PetscLogEventEnd(MOFEM_EVENT_SimpleBuildProblem, 0, 0, 0, 0);
   MoFEMFunctionReturn(0);
 }

◆ defineFiniteElements()

MoFEMErrorCode MoFEM::Simple::defineFiniteElements ( )

Define finite elements.

Returns: Error code

Examples: mesh_smoothing.cpp, and simple_elasticity.cpp.

Definition at line 159 of file Simple.cpp.

                                             {
   Interface &m_field = cOre;
   MoFEMFunctionBeginHot;
   // Define finite elements
   CHKERR m_field.add_finite_element(domainFE);
   for (unsigned int ff = 0; ff != domainFields.size(); ff++) {
     CHKERR m_field.modify_finite_element_add_field_row(domainFE,
                                                        domainFields[ff]);
     CHKERR m_field.modify_finite_element_add_field_col(domainFE,
                                                        domainFields[ff]);
     CHKERR m_field.modify_finite_element_add_field_data(domainFE,
                                                         domainFields[ff]);
   }
   for (unsigned int ff = 0; ff != dataFields.size(); ff++) {
     CHKERR m_field.modify_finite_element_add_field_data(domainFE,
                                                         dataFields[ff]);
   }
   if (!boundaryFields.empty()) {
     CHKERR m_field.add_finite_element(boundaryFE);
     for (unsigned int ff = 0; ff != domainFields.size(); ff++) {
       CHKERR m_field.modify_finite_element_add_field_row(boundaryFE,
                                                          domainFields[ff]);
       CHKERR m_field.modify_finite_element_add_field_col(boundaryFE,
                                                          domainFields[ff]);
       CHKERR m_field.modify_finite_element_add_field_data(boundaryFE,
                                                           domainFields[ff]);
     }
     for (unsigned int ff = 0; ff != boundaryFields.size(); ff++) {
       CHKERR m_field.modify_finite_element_add_field_row(boundaryFE,
                                                          boundaryFields[ff]);
       CHKERR m_field.modify_finite_element_add_field_col(boundaryFE,
                                                          boundaryFields[ff]);
       CHKERR m_field.modify_finite_element_add_field_data(boundaryFE,
                                                           boundaryFields[ff]);
     }
     for (unsigned int ff = 0; ff != skeletonFields.size(); ff++) {
       CHKERR m_field.modify_finite_element_add_field_row(boundaryFE,
                                                          skeletonFields[ff]);
       CHKERR m_field.modify_finite_element_add_field_col(boundaryFE,
                                                          skeletonFields[ff]);
       CHKERR m_field.modify_finite_element_add_field_data(boundaryFE,
                                                           skeletonFields[ff]);
     }
   }
   if (!skeletonFields.empty()) {
     CHKERR m_field.add_finite_element(skeletonFE);
     for (unsigned int ff = 0; ff != domainFields.size(); ff++) {
       CHKERR m_field.modify_finite_element_add_field_row(skeletonFE,
                                                          domainFields[ff]);
       CHKERR m_field.modify_finite_element_add_field_col(skeletonFE,
                                                          domainFields[ff]);
       CHKERR m_field.modify_finite_element_add_field_data(skeletonFE,
                                                           domainFields[ff]);
     }
     for (unsigned int ff = 0; ff != boundaryFields.size(); ff++) {
       CHKERR m_field.modify_finite_element_add_field_row(skeletonFE,
                                                          boundaryFields[ff]);
       CHKERR m_field.modify_finite_element_add_field_col(skeletonFE,
                                                          boundaryFields[ff]);
       CHKERR m_field.modify_finite_element_add_field_data(skeletonFE,
                                                           boundaryFields[ff]);
     }
     for (unsigned int ff = 0; ff != skeletonFields.size(); ff++) {
       CHKERR m_field.modify_finite_element_add_field_row(skeletonFE,
                                                          skeletonFields[ff]);
       CHKERR m_field.modify_finite_element_add_field_col(skeletonFE,
                                                          skeletonFields[ff]);
       CHKERR m_field.modify_finite_element_add_field_data(skeletonFE,
                                                           skeletonFields[ff]);
     }
   }
   MoFEMFunctionReturnHot(0);
 }

◆ defineProblem()

MoFEMErrorCode MoFEM::Simple::defineProblem ( const PetscBool is_partitioned = PETSC_TRUE )

define problem

Returns: error code

Examples: mesh_smoothing.cpp, and simple_elasticity.cpp.

Definition at line 233 of file Simple.cpp.

                                                                    {
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
   // Create dm instance
   dM = createSmartDM(m_field.get_comm(), "DMMOFEM");
   // set dm data structure which created mofem data structures
   CHKERR DMMoFEMCreateMoFEM(dM, &m_field, nameOfProblem.c_str(), bitLevel);
   CHKERR DMSetFromOptions(dM);
   CHKERR DMMoFEMAddElement(dM, domainFE.c_str());
   if (!boundaryFields.empty()) {
     CHKERR DMMoFEMAddElement(dM, boundaryFE.c_str());
   }
   if (!skeletonFields.empty()) {
     CHKERR DMMoFEMAddElement(dM, skeletonFE.c_str());
   }
   for (std::vector<std::string>::iterator fit = otherFEs.begin();
        fit != otherFEs.end(); ++fit) {
     CHKERR DMMoFEMAddElement(dM, fit->c_str());
   }
   CHKERR DMMoFEMSetIsPartitioned(dM, is_partitioned);
   MoFEMFunctionReturn(0);
 }

◆ getBoundaryFEName() [1/2]

const std::string MoFEM::Simple::getBoundaryFEName ( ) const

Examples: hello_world.cpp, mesh_smoothing.cpp, and simple_interface.cpp.

Definition at line 222 of file Simple.hpp.

222 { return boundaryFE; }

MoFEM::Simple::boundaryFE

std::string boundaryFE

boundary finite element

Definition: Simple.hpp:253

◆ getBoundaryFEName() [2/2]

std::string& MoFEM::Simple::getBoundaryFEName ( )

Definition at line 227 of file Simple.hpp.

227 { return boundaryFE; }

MoFEM::Simple::boundaryFE

std::string boundaryFE

boundary finite element

Definition: Simple.hpp:253

◆ getDim()

int MoFEM::Simple::getDim ( ) const

Definition at line 220 of file Simple.hpp.

220 { return dIm; }

MoFEM::Simple::dIm

int dIm

dimension of problem

Definition: Simple.hpp:259

◆ getDM() [1/2]

MoFEMErrorCode MoFEM::Simple::getDM ( DM * dm )

Get DM.

Parameters

dm	discrete manager

Returns: error code

Examples: continuity_check_on_skeleton_with_simple_2d.cpp, field_evaluator.cpp, hello_world.cpp, loop_entities.cpp, mesh_smoothing.cpp, reaction_diffusion_equation.cpp, simple_elasticity.cpp, simple_interface.cpp, testing_jacobian_of_hook_element.cpp, and testing_jacobian_of_hook_scaled_with_density_element.cpp.

Definition at line 517 of file Simple.cpp.

                                    {
   MoFEMFunctionBegin;
   CHKERR PetscObjectReference(getPetscObject(dM.get()));
   *dm = dM.get();
   MoFEMFunctionReturn(0);
 }

◆ getDM() [2/2]

SmartPetscObj<DM> MoFEM::Simple::getDM ( )

Return smart DM object.

{
   auto dm  = simple_interface->getDM();
   // ...
   // dm is automatically destroyed when out of the scope
}

Returns: SmartPetscObj<DM>

Definition at line 218 of file Simple.hpp.

218 { return dM; }

MoFEM::Simple::dM

SmartPetscObj< DM > dM

Definition: Simple.hpp:261

◆ getDomainFEName() [1/2]

const std::string MoFEM::Simple::getDomainFEName ( ) const

Examples: field_evaluator.cpp, hello_world.cpp, mesh_smoothing.cpp, reaction_diffusion_equation.cpp, simple_elasticity.cpp, simple_interface.cpp, testing_jacobian_of_hook_element.cpp, and testing_jacobian_of_hook_scaled_with_density_element.cpp.

Definition at line 221 of file Simple.hpp.

221 { return domainFE; }

MoFEM::Simple::domainFE

std::string domainFE

domain finite element

Definition: Simple.hpp:252

◆ getDomainFEName() [2/2]

std::string& MoFEM::Simple::getDomainFEName ( )

Definition at line 226 of file Simple.hpp.

226 { return domainFE; }

MoFEM::Simple::domainFE

std::string domainFE

domain finite element

Definition: Simple.hpp:252

◆ getOptions()

MoFEMErrorCode MoFEM::Simple::getOptions ( )

get options

Returns: error code

Examples: continuity_check_on_skeleton_with_simple_2d.cpp, field_blas_set_vertex_dofs.cpp, field_evaluator.cpp, hello_world.cpp, loop_entities.cpp, mesh_smoothing.cpp, reaction_diffusion_equation.cpp, simple_elasticity.cpp, simple_interface.cpp, testing_jacobian_of_hook_element.cpp, and testing_jacobian_of_hook_scaled_with_density_element.cpp.

Definition at line 48 of file Simple.cpp.

                                   {
   PetscBool flg = PETSC_TRUE;
   MoFEMFunctionBeginHot;
   ierr = PetscOptionsBegin(PETSC_COMM_WORLD, "", "Simple interface options",
                            "none");
   CHKERRG(ierr);
   ierr = PetscOptionsString("-file_name", "file name", "", "mesh.h5m",
                             meshFileName, 255, &flg);
   CHKERRG(ierr);
   ierr = PetscOptionsEnd();
   CHKERRG(ierr);
   MoFEMFunctionReturnHot(0);
 }

◆ getOtherFiniteElements()

std::vector<std::string>& MoFEM::Simple::getOtherFiniteElements ( )

Examples: mesh_smoothing.cpp.

Definition at line 231 of file Simple.hpp.

231 { return otherFEs; }

MoFEM::Simple::otherFEs

std::vector< std::string > otherFEs

Other finite elements.

Definition: Simple.hpp:256

◆ getProblemName() [1/2]

const std::string MoFEM::Simple::getProblemName ( ) const

Examples: reaction_diffusion_equation.cpp.

Definition at line 224 of file Simple.hpp.

224 { return nameOfProblem; }

MoFEM::Simple::nameOfProblem

std::string nameOfProblem

problem name

Definition: Simple.hpp:251

◆ getProblemName() [2/2]

std::string& MoFEM::Simple::getProblemName ( )

Definition at line 229 of file Simple.hpp.

229 { return nameOfProblem; }

MoFEM::Simple::nameOfProblem

std::string nameOfProblem

problem name

Definition: Simple.hpp:251

◆ getSkeletonFEName() [1/2]

const std::string MoFEM::Simple::getSkeletonFEName ( ) const

Examples: continuity_check_on_skeleton_with_simple_2d.cpp, and hello_world.cpp.

Definition at line 223 of file Simple.hpp.

223 { return skeletonFE; }

MoFEM::Simple::skeletonFE

std::string skeletonFE

skeleton finite element

Definition: Simple.hpp:254

◆ getSkeletonFEName() [2/2]

std::string& MoFEM::Simple::getSkeletonFEName ( )

Definition at line 228 of file Simple.hpp.

228 { return skeletonFE; }

MoFEM::Simple::skeletonFE

std::string skeletonFE

skeleton finite element

Definition: Simple.hpp:254

◆ loadFile()

MoFEMErrorCode MoFEM::Simple::loadFile ( const std::string options = "PARALLEL=READ_PART;" "PARALLEL_RESOLVE_SHARED_ENTS;" "PARTITION=PARALLEL_PARTITION;" )

Load mesh file.

Parameters

field_name file name

Returns: error code

Examples: continuity_check_on_skeleton_with_simple_2d.cpp, field_blas_set_vertex_dofs.cpp, field_evaluator.cpp, hello_world.cpp, loop_entities.cpp, mesh_smoothing.cpp, reaction_diffusion_equation.cpp, simple_elasticity.cpp, simple_interface.cpp, testing_jacobian_of_hook_element.cpp, and testing_jacobian_of_hook_scaled_with_density_element.cpp.

Definition at line 62 of file Simple.cpp.

                                                        {
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
   PetscLogEventBegin(MOFEM_EVENT_SimpleLoadMesh, 0, 0, 0, 0);
   // This is a case of distributed mesh and algebra. In that case each processor
   // keep only part of the problem.
   CHKERR m_field.get_moab().load_file(meshFileName, 0, options.c_str());
   CHKERR m_field.rebuild_database();
   // determine problem dimension
   if (dIm == -1) {
     int nb_ents_3d;
     CHKERR m_field.get_moab().get_number_entities_by_dimension(
         meshSet, 3, nb_ents_3d, true);
     if (nb_ents_3d > 0) {
       dIm = 3;
     } else {
       int nb_ents_2d;
       CHKERR m_field.get_moab().get_number_entities_by_dimension(
           meshSet, 2, nb_ents_2d, true);
       if (nb_ents_2d > 0) {
         dIm = 2;
       } else {
         dIm = 1;
       }
     }
   }
   Range ents;
   CHKERR m_field.get_moab().get_entities_by_dimension(meshSet, dIm, ents, true);
   CHKERR m_field.getInterface<BitRefManager>()->setBitRefLevel(ents, bitLevel,
                                                                false);
   ParallelComm *pcomm =
       ParallelComm::get_pcomm(&m_field.get_moab(), MYPCOMM_INDEX);
   if (pcomm == NULL)
     pcomm = new ParallelComm(&m_field.get_moab(), m_field.get_comm());
   PetscLogEventEnd(MOFEM_EVENT_SimpleLoadMesh, 0, 0, 0, 0);
   MoFEMFunctionReturn(0);
 }

◆ query_interface()

MoFEMErrorCode MoFEM::Simple::query_interface	(	const MOFEMuuid &	uuid,
		UnknownInterface **	iface
	)		const

virtual

Implements MoFEM::UnknownInterface.

Definition at line 22 of file Simple.cpp.

                                                                        {
   MoFEMFunctionBeginHot;
   *iface = NULL;
   if (uuid == IDD_MOFEMSimple) {
     *iface = const_cast<Simple *>(this);
     MoFEMFunctionReturnHot(0);
   }
   SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY, "unknown interface");
   MoFEMFunctionReturnHot(0);
 }

◆ setFieldOrder()

MoFEMErrorCode MoFEM::Simple::setFieldOrder	(	const std::string	field_name,
		const int	order,
		const Range *	ents = `NULL`
	)

Set field order.

Parameters

std::field_name	field name
order	order
range	of entities to which order is set (If null it sat to all entities)

Returns: error code

Examples: continuity_check_on_skeleton_with_simple_2d.cpp, field_blas_set_vertex_dofs.cpp, field_evaluator.cpp, hello_world.cpp, loop_entities.cpp, mesh_smoothing.cpp, reaction_diffusion_equation.cpp, simple_elasticity.cpp, simple_interface.cpp, testing_jacobian_of_hook_element.cpp, and testing_jacobian_of_hook_scaled_with_density_element.cpp.

Definition at line 256 of file Simple.cpp.

                                                                          {
   MoFEMFunctionBeginHot;
   fieldsOrder[field_name] =
       std::pair<int, Range>(order, ents == NULL ? Range() : Range(*ents));
   MoFEMFunctionReturnHot(0);
 }

◆ setUp()

MoFEMErrorCode MoFEM::Simple::setUp ( const PetscBool is_partitioned = PETSC_TRUE )

Setup problem.

Returns: error code

Examples: continuity_check_on_skeleton_with_simple_2d.cpp, field_evaluator.cpp, hello_world.cpp, loop_entities.cpp, reaction_diffusion_equation.cpp, simple_interface.cpp, testing_jacobian_of_hook_element.cpp, and testing_jacobian_of_hook_scaled_with_density_element.cpp.

Definition at line 507 of file Simple.cpp.

                                                            {
   MoFEMFunctionBegin;
   CHKERR defineFiniteElements();
   CHKERR defineProblem(is_partitioned);
   CHKERR buildFields();
   CHKERR buildFiniteElements();
   CHKERR buildProblem();
   MoFEMFunctionReturn(0);
 }

Member Data Documentation

◆ bitLevel

const BitRefLevel MoFEM::Simple::bitLevel

private

Definition at line 234 of file Simple.hpp.

◆ boundaryFE

std::string MoFEM::Simple::boundaryFE

private

boundary finite element

Definition at line 253 of file Simple.hpp.

◆ boundaryFields

std::vector<std::string> MoFEM::Simple::boundaryFields

private

boundary fields

Definition at line 245 of file Simple.hpp.

◆ boundaryMeshset

EntityHandle MoFEM::Simple::boundaryMeshset

private

meshset with boundary

Definition at line 243 of file Simple.hpp.

◆ cOre

MoFEM::Core& MoFEM::Simple::cOre

Definition at line 41 of file Simple.hpp.

◆ dataFields

std::vector<std::string> MoFEM::Simple::dataFields

private

Data fields.

Definition at line 247 of file Simple.hpp.

◆ dIm

int MoFEM::Simple::dIm

private

dimension of problem

Definition at line 259 of file Simple.hpp.

◆ dM

SmartPetscObj<DM> MoFEM::Simple::dM

private

Definition at line 261 of file Simple.hpp.

◆ domainFE

std::string MoFEM::Simple::domainFE

private

domain finite element

Definition at line 252 of file Simple.hpp.

◆ domainFields

std::vector<std::string> MoFEM::Simple::domainFields

private

domain fields

Definition at line 244 of file Simple.hpp.

◆ fieldsOrder

std::map<std::string, std::pair<int, Range> > MoFEM::Simple::fieldsOrder

private

fields order

Definition at line 249 of file Simple.hpp.

◆ meshFileName

char MoFEM::Simple::meshFileName[255]

private

mesh file name

Definition at line 258 of file Simple.hpp.

◆ meshSet

EntityHandle MoFEM::Simple::meshSet

private

domain meshset

Definition at line 242 of file Simple.hpp.

◆ MOFEM_EVENT_SimpleBuildFields

PetscLogEvent MoFEM::Simple::MOFEM_EVENT_SimpleBuildFields

private

Definition at line 237 of file Simple.hpp.

◆ MOFEM_EVENT_SimpleBuildFiniteElements

PetscLogEvent MoFEM::Simple::MOFEM_EVENT_SimpleBuildFiniteElements

private

Definition at line 238 of file Simple.hpp.

◆ MOFEM_EVENT_SimpleBuildProblem

PetscLogEvent MoFEM::Simple::MOFEM_EVENT_SimpleBuildProblem

private

Definition at line 239 of file Simple.hpp.

◆ MOFEM_EVENT_SimpleKSPSolve

PetscLogEvent MoFEM::Simple::MOFEM_EVENT_SimpleKSPSolve

private

Definition at line 240 of file Simple.hpp.

◆ MOFEM_EVENT_SimpleLoadMesh

PetscLogEvent MoFEM::Simple::MOFEM_EVENT_SimpleLoadMesh

private

Definition at line 236 of file Simple.hpp.

◆ nameOfProblem

std::string MoFEM::Simple::nameOfProblem

private

problem name

Definition at line 251 of file Simple.hpp.

◆ otherFEs

std::vector<std::string> MoFEM::Simple::otherFEs

private

Other finite elements.

Definition at line 256 of file Simple.hpp.

◆ skeletonFE

std::string MoFEM::Simple::skeletonFE

private

skeleton finite element

Definition at line 254 of file Simple.hpp.

◆ skeletonFields

std::vector<std::string> MoFEM::Simple::skeletonFields

private

fields on the skeleton

Definition at line 246 of file Simple.hpp.

The documentation for this struct was generated from the following files:

src/interfaces/Simple.hpp
src/interfaces/impl/Simple.cpp

Public Member Functions

Public Attributes

Private Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ Simple()

◆ ~Simple()

Member Function Documentation

◆ addBoundaryField()

◆ addDataField()

◆ addDomainField()

◆ addSkeletonField()

◆ buildFields()

◆ buildFiniteElements()

◆ buildProblem()

◆ defineFiniteElements()

◆ defineProblem()

◆ getBoundaryFEName() [1/2]

◆ getBoundaryFEName() [2/2]

◆ getDim()

◆ getDM() [1/2]

◆ getDM() [2/2]

◆ getDomainFEName() [1/2]

◆ getDomainFEName() [2/2]

◆ getOptions()

◆ getOtherFiniteElements()

◆ getProblemName() [1/2]

◆ getProblemName() [2/2]

◆ getSkeletonFEName() [1/2]

◆ getSkeletonFEName() [2/2]

◆ loadFile()

◆ query_interface()

◆ setFieldOrder()

◆ setUp()

Member Data Documentation

◆ bitLevel

◆ boundaryFE

◆ boundaryFields

◆ boundaryMeshset

◆ cOre

◆ dataFields

◆ dIm

◆ dM

◆ domainFE

◆ domainFields

◆ fieldsOrder

◆ meshFileName

◆ meshSet

◆ MOFEM_EVENT_SimpleBuildFields

◆ MOFEM_EVENT_SimpleBuildFiniteElements

◆ MOFEM_EVENT_SimpleBuildProblem

◆ MOFEM_EVENT_SimpleKSPSolve

◆ MOFEM_EVENT_SimpleLoadMesh

◆ nameOfProblem

◆ otherFEs

◆ skeletonFE

◆ skeletonFields