v0.9.1
Public Member Functions | Public Attributes | List of all members
PrismOp Struct Reference
Inheritance diagram for PrismOp:
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Collaboration diagram for PrismOp:
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Public Member Functions

 PrismOp (moab::Interface &post_proc, MapCoords &map_coords)
 
MoFEMErrorCode doWork (int side, EntityType type, DataForcesAndSourcesCore::EntData &data)
 Operator for linear form, usually to calculate values on right hand side. More...
 
- Public Member Functions inherited from MoFEM::FatPrismElementForcesAndSourcesCore::UserDataOperator
double getArea (const int dd)
 get face aRea More...
 
double getAreaF3 ()
 
double getAreaF4 ()
 
VectorDoublegetNormal ()
 get triangle normal More...
 
VectorAdaptor getNormalF3 ()
 
VectorAdaptor getNormalF4 ()
 
MatrixDoublegetGaussPts ()
 get Gauss pts. in the prism More...
 
MatrixDoublegetGaussPtsTrianglesOnly ()
 get Gauss pts. on triangles More...
 
MatrixDoublegetGaussPtsThroughThickness ()
 get Gauss pts. through thickness More...
 
MatrixDoublegetCoordsAtGaussPts ()
 get coordinates at Gauss pts. More...
 
MatrixDoublegetCoordsAtGaussPtsTrianglesOnly ()
 get coordinates at Gauss pts. More...
 
MatrixDoublegetHoCoordsAtGaussPtsF3 ()
 coordinate at Gauss points on face 3 (if hierarchical approximation of element geometry) More...
 
MatrixDoublegetHoCoordsAtGaussPtsF4 ()
 coordinate at Gauss points on face 4 (if hierarchical approximation of element geometry) More...
 
MatrixDoublegetNormalsAtGaussPtF3 ()
 if higher order geometry return normals at face F3 at Gauss pts. More...
 
MatrixDoublegetNormalsAtGaussPtF4 ()
 if higher order geometry return normals at face F4 at Gauss pts. More...
 
ublas::matrix_row< MatrixDoublegetNormalsAtGaussPtF3 (const int gg)
 if higher order geometry return normals at Gauss pts. More...
 
ublas::matrix_row< MatrixDoublegetNormalsAtGaussPtF4 (const int gg)
 if higher order geometry return normals at Gauss pts. More...
 
MatrixDoublegetTangent1AtGaussPtF3 ()
 if higher order geometry return tangent vector to triangle at Gauss pts. More...
 
MatrixDoublegetTangent2AtGaussPtF3 ()
 if higher order geometry return tangent vector to triangle at Gauss pts. More...
 
MatrixDoublegetTangent1AtGaussPtF4 ()
 if higher order geometry return tangent vector to triangle at Gauss pts. More...
 
MatrixDoublegetTangent2AtGaussPtF4 ()
 if higher order geometry return tangent vector to triangle at Gauss pts. More...
 
DataForcesAndSourcesCoregetTrianglesOnlyDataStructure ()
 
DataForcesAndSourcesCoregetTroughThicknessDataStructure ()
 
const FatPrismElementForcesAndSourcesCoregetPrismFE ()
 return pointer to fat prism finite element More...
 
- Public Member Functions inherited from MoFEM::VolumeElementForcesAndSourcesCoreBase::UserDataOperator
int getNumNodes ()
 get element number of nodes More...
 
const EntityHandlegetConn ()
 get element connectivity More...
 
double getVolume () const
 element volume (linear geometry) More...
 
doublegetVolume ()
 element volume (linear geometry) More...
 
FTensor::Tensor2< double *, 3, 3 > & getJac ()
 get element Jacobian More...
 
FTensor::Tensor2< double *, 3, 3 > & getInvJac ()
 get element inverse Jacobian More...
 
double getMeasure () const
 get measure of element More...
 
doublegetMeasure ()
 get measure of element More...
 
VectorDoublegetCoords ()
 nodal coordinates More...
 
MatrixDoublegetCoordsAtGaussPts ()
 Gauss points and weight, matrix (nb. of points x 3) More...
 
MatrixDoublegetHoCoordsAtGaussPts ()
 coordinate at Gauss points (if hierarchical approximation of element geometry) More...
 
MatrixDoublegetHoGaussPtsJac ()
 
MatrixDoublegetHoGaussPtsInvJac ()
 
VectorDoublegetHoGaussPtsDetJac ()
 
auto getFTenosr0HoMeasure ()
 
auto getFTensor1CoordsAtGaussPts ()
 Get coordinates at integration points assuming linear geometry. More...
 
auto getFTensor1HoCoordsAtGaussPts ()
 Get coordinates at integration points taking geometry from field. More...
 
auto getFTensor2HoGaussPtsJac ()
 
auto getFTensor2HoGaussPtsInvJac ()
 
VolumeElementForcesAndSourcesCoreBasegetVolumeFE () const
 return pointer to Generic Volume Finite Element object More...
 
MoFEMErrorCode getDivergenceOfHDivBaseFunctions (int side, EntityType type, DataForcesAndSourcesCore::EntData &data, int gg, VectorDouble &div)
 Get divergence of base functions at integration point. More...
 
MoFEMErrorCode getCurlOfHCurlBaseFunctions (int side, EntityType type, DataForcesAndSourcesCore::EntData &data, int gg, MatrixDouble &curl)
 Get curl of base functions at integration point. More...
 
- Public Member Functions inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
 UserDataOperator (const FieldSpace space, const char type=OPLAST, const bool symm=true)
 
 UserDataOperator (const std::string &field_name, const char type, const bool symm=true)
 
 UserDataOperator (const std::string &row_field_name, const std::string &col_field_name, const char type, const bool symm=true)
 
boost::shared_ptr< const NumeredEntFiniteElementgetNumeredEntFiniteElementPtr () const
 Return raw pointer to NumeredEntFiniteElement. More...
 
EntityHandle getFEEntityHandle () const
 Return finite element entity handle. More...
 
boost::weak_ptr< SideNumber > getSideNumberPtr (const int side_number, const EntityType type)
 Get the side number pointer. More...
 
EntityHandle getSideEntity (const int side_number, const EntityType type)
 Get the side entity. More...
 
int getNumberOfNodesOnElement ()
 Get the number of nodes on finite element. More...
 
MoFEMErrorCode getProblemRowIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 Get row indices. More...
 
MoFEMErrorCode getProblemColIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 Get col indices. More...
 
const FEMethodgetFEMethod () const
 Return raw pointer to Finite Element Method object. More...
 
int getOpType () const
 Get operator types. More...
 
void setOpType (const OpType type)
 Set operator type. More...
 
void addOpType (const OpType type)
 Add operator type. More...
 
int getNinTheLoop () const
 get number of finite element in the loop More...
 
int getLoopSize () const
 get size of elements in the loop More...
 
const std::string & getFEName () const
 Get name of the element. More...
 
const PetscData::SwitchesgetDataCtx () const
 
const KspMethod::KSPContext getKSPCtx () const
 
const SnesMethod::SNESContext getSNESCtx () const
 
const TSMethod::TSContext getTSCtx () const
 
Vec getKSPf () const
 
Mat getKSPA () const
 
Mat getKSPB () const
 
Vec getSNESf () const
 
Vec getSNESx () const
 
Mat getSNESA () const
 
Mat getSNESB () const
 
DEPRECATED Vec getSnesF () const
 
DEPRECATED Vec getSnesX () const
 
DEPRECATED Mat getSnesA () const
 
DEPRECATED Mat getSnesB () const
 
Vec getTSu () const
 
Vec getTSu_t () const
 
Vec getTSu_tt () const
 
Vec getTSf () const
 
Mat getTSA () const
 
Mat getTSB () const
 
int getTSstep () const
 
double getTStime () const
 
double getTSa () const
 
MatrixDoublegetGaussPts ()
 matrix of integration (Gauss) points for Volume Element More...
 
auto getFTensor0IntegrationWeight ()
 Get integration weights. More...
 
DEPRECATED MoFEMErrorCode getPorblemRowIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 
- Public Member Functions inherited from MoFEM::DataOperator
 DataOperator (const bool symm=true)
 
virtual ~DataOperator ()=default
 
virtual MoFEMErrorCode doWork (int row_side, int col_side, EntityType row_type, EntityType col_type, DataForcesAndSourcesCore::EntData &row_data, DataForcesAndSourcesCore::EntData &col_data)
 Operator for bi-linear form, usually to calculate values on left hand side. More...
 
virtual MoFEMErrorCode opLhs (DataForcesAndSourcesCore &row_data, DataForcesAndSourcesCore &col_data)
 
virtual MoFEMErrorCode opRhs (DataForcesAndSourcesCore &data, const bool error_if_no_base=false)
 
bool getSymm () const
 Get if operator uses symmetry of DOFs or not. More...
 
void setSymm ()
 set if operator is executed taking in account symmetry More...
 
void unSetSymm ()
 unset if operator is executed for non symmetric problem More...
 

Public Attributes

moab::Interface & postProc
 
MapCoordsmapCoords
 
std::vector< EntityHandlenodeHandles
 
- Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
char opType
 
std::string rowFieldName
 
std::string colFieldName
 
FieldSpace sPace
 
- Public Attributes inherited from MoFEM::DataOperator
bool sYmm
 If true assume that matrix is symmetric structure. More...
 
std::array< bool, MBMAXTYPE > doEntities
 If true operator is executed for entity. More...
 
booldoVertices
 \deprectaed If false skip vertices More...
 
booldoEdges
 \deprectaed If false skip edges More...
 
booldoQuads
 \deprectaed More...
 
booldoTris
 \deprectaed More...
 
booldoTets
 \deprectaed More...
 
booldoPrisms
 \deprectaed More...
 

Additional Inherited Members

- Public Types inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
enum  OpType { OPROW = 1 << 0, OPCOL = 1 << 1, OPROWCOL = 1 << 2, OPLAST = 1 << 3 }
 Controls loop over entities on element. More...
 
- Protected Member Functions inherited from MoFEM::FatPrismElementForcesAndSourcesCore::UserDataOperator
MoFEMErrorCode setPtrFE (ForcesAndSourcesCore *ptr)
 
- Protected Member Functions inherited from MoFEM::VolumeElementForcesAndSourcesCoreBase::UserDataOperator
MoFEMErrorCode setPtrFE (ForcesAndSourcesCore *ptr)
 
- Protected Member Functions inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
ForcesAndSourcesCoregetPtrFE () const
 
ForcesAndSourcesCoregetSidePtrFE () const
 
- Protected Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
ForcesAndSourcesCoreptrFE
 

Detailed Description

Examples
prism_elements_from_surface.cpp.

Definition at line 60 of file prism_elements_from_surface.cpp.

Constructor & Destructor Documentation

◆ PrismOp()

PrismOp::PrismOp ( moab::Interface &  post_proc,
MapCoords map_coords 
)
Examples
prism_elements_from_surface.cpp.

Definition at line 355 of file prism_elements_from_surface.cpp.

357  "FIELD1", "FIELD1", ForcesAndSourcesCore::UserDataOperator::OPROW),
358  postProc(post_proc), mapCoords(map_coords) {}
ForcesAndSourcesCore::UserDataOperator UserDataOperator
moab::Interface & postProc

Member Function Documentation

◆ doWork()

MoFEMErrorCode PrismOp::doWork ( int  side,
EntityType  type,
DataForcesAndSourcesCore::EntData data 
)
virtual

Operator for linear form, usually to calculate values on right hand side.

Reimplemented from MoFEM::DataOperator.

Examples
prism_elements_from_surface.cpp.

Definition at line 360 of file prism_elements_from_surface.cpp.

361  {
362  constexpr double def_val[] = {0, 0, 0};
364  switch (type) {
365  case MBVERTEX:
366  case MBEDGE:
367  case MBTRI:
368  case MBQUAD:
369  case MBPRISM:
370  break;
371  default:
373  }
374  if (type == MBTRI && (side != 3 && side != 4))
376  if (type == MBQUAD && (side == 3 || side == 4))
378 
379  const int nb_dofs = data.getIndices().size();
380  for (int dd = 0; dd != nb_dofs; ++dd)
381  data.getFieldDofs()[dd]->getFieldData() = data.getIndices()[dd];
382 
383  if (type == MBVERTEX) {
384  const size_t nb_gauss_pts = getGaussPts().size2();
385  auto &coords_at_pts = getGaussPts();
386  nodeHandles.reserve(nb_gauss_pts);
387  nodeHandles.clear();
388  for (size_t gg = 0; gg != nb_gauss_pts; ++gg) {
389  auto t = boost::make_tuple(CoordsAndHandle::getArg(coords_at_pts(0, gg)),
390  CoordsAndHandle::getArg(coords_at_pts(1, gg)),
391  CoordsAndHandle::getArg(coords_at_pts(2, gg)));
392 
393  auto it = mapCoords.find(t);
394  if (it != mapCoords.end())
395  nodeHandles.emplace_back(it->node);
396  else
397  SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY, "Vertex not found");
398  }
399 
400  MatrixDouble node_coords(nb_gauss_pts, 3);
401  CHKERR postProc.get_coords(&nodeHandles[0], nodeHandles.size(),
402  &node_coords(0, 0));
403  for (size_t gg = 0; gg != nb_gauss_pts; ++gg) {
404  constexpr double eps = 1e-12;
405  for (auto d : {0, 1, 2})
406  if (std::abs(node_coords(gg, d) - getGaussPts()(d, gg)) > eps) {
407  SETERRQ(PETSC_COMM_SELF, MOFEM_ATOM_TEST_INVALID,
408  "Inconsistency between node coords and integration "
409  "points");
410  }
411  for (auto d : {0, 1, 2})
412  if (std::abs(node_coords(gg, d) - getCoordsAtGaussPts()(gg, d)) > eps)
413  SETERRQ(PETSC_COMM_SELF, MOFEM_ATOM_TEST_INVALID,
414  "Inconsistency between node coords and integration "
415  "points");
416  }
417 
418  Tag th;
419  CHKERR postProc.tag_get_handle("Coords", 3, MB_TYPE_DOUBLE, th,
420  MB_TAG_CREAT | MB_TAG_DENSE, def_val);
421  CHKERR postProc.tag_set_data(th, &nodeHandles[0], nodeHandles.size(),
422  &getCoordsAtGaussPts()(0, 0));
423  }
424 
425  auto to_str = [](auto i) { return boost::lexical_cast<std::string>(i); };
426  std::string tag_name_base =
427  "PrismType" + to_str(type) + "Side" + to_str(side);
428  std::cout << tag_name_base << endl;
429 
430  MatrixDouble trans_base = trans(data.getN());
431  if (trans_base.size2() != nodeHandles.size())
432  SETERRQ2(PETSC_COMM_SELF, MOFEM_ATOM_TEST_INVALID, "wrong size %d != %d",
433  trans_base.size2(), nodeHandles.size());
434  for (size_t rr = 0; rr != trans_base.size1(); ++rr) {
435  auto tag_name = tag_name_base + "Base" + to_str(rr);
436  Tag th;
437  CHKERR postProc.tag_get_handle(tag_name.c_str(), 1, MB_TYPE_DOUBLE, th,
438  MB_TAG_CREAT | MB_TAG_DENSE, def_val);
439  CHKERR postProc.tag_set_data(th, &nodeHandles[0], nodeHandles.size(),
440  &trans_base(rr, 0));
441  }
442 
444 }
static double getArg(double x)
ublas::matrix< double, ublas::row_major, DoubleAllocator > MatrixDouble
Definition: Types.hpp:74
std::vector< EntityHandle > nodeHandles
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:482
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:513
const VectorInt & getIndices() const
Get global indices of dofs on entity.
const Tensor1_Expr< const dTensor0< T, Dim, i >, typename promote< T, double >::V, Dim, i > d(const Tensor0< T * > &a, const Index< i, Dim > index, const Tensor1< int, Dim > &d_ijk, const Tensor1< double, Dim > &d_xyz)
Definition: dTensor0.hpp:27
const Tensor2_symmetric_Expr< const ddTensor0< T, Dim, i, j >, typename promote< T, double >::V, Dim, i, j > dd(const Tensor0< T * > &a, const Index< i, Dim > index1, const Index< j, Dim > index2, const Tensor1< int, Dim > &d_ijk, const Tensor1< double, Dim > &d_xyz)
Definition: ddTensor0.hpp:33
#define CHKERR
Inline error check.
Definition: definitions.h:601
moab::Interface & postProc
const VectorDofs & getFieldDofs() const
get dofs data stature FEDofEntity
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:412
static const double eps
MatrixDouble & getN(const FieldApproximationBase base)
get base functions this return matrix (nb. of rows is equal to nb. of Gauss pts, nb....
FTensor::Index< 'i', 2 > i
[Common data]
Definition: ContactOps.hpp:26

Member Data Documentation

◆ mapCoords

MapCoords& PrismOp::mapCoords

◆ nodeHandles

std::vector<EntityHandle> PrismOp::nodeHandles

◆ postProc

moab::Interface& PrismOp::postProc

The documentation for this struct was generated from the following file: