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Public Member Functions | Private Attributes | List of all members
StdRDOperators::OpAssembleNaturalBCRhs Struct Reference

#include <users_modules/softmech/chemo_mech/src/rd_stdOperators.hpp>

Inheritance diagram for StdRDOperators::OpAssembleNaturalBCRhs:
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Collaboration diagram for StdRDOperators::OpAssembleNaturalBCRhs:
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Public Member Functions

 OpAssembleNaturalBCRhs (std::string mass_field, Range &natural_bd_ents)
 
MoFEMErrorCode doWork (int side, EntityType type, EntData &data)
 
- Public Member Functions inherited from MoFEM::EdgeElementForcesAndSourcesCore::UserDataOperator
const EntityHandlegetConn ()
 get element connectivity More...
 
double getLength ()
 get edge length More...
 
double getMeasure ()
 get measure of element More...
 
VectorDoublegetDirection ()
 get edge direction More...
 
auto getFTensor1Normal ()
 get edge normal NOTE: it should be used only in 2D analysis More...
 
auto getFTensor1Normal (const FTensor::Tensor1< double, 3 > &vec)
 get ftensor1 edge normal More...
 
VectorDoublegetCoords ()
 get edge node coordinates More...
 
MatrixDoublegetTangentAtGaussPts ()
 get tangent vector to edge curve at integration points More...
 
DEPRECATED MatrixDoublegetTangetAtGaussPts ()
 
const EdgeElementForcesAndSourcesCoregetEdgeFE ()
 get pointer to this finite element More...
 
FTensor::Tensor1< double, 3 > getFTensor1Direction ()
 
FTensor::Tensor1< FTensor::PackPtr< double *, 3 >, 3 > getTensor1Coords ()
 get get coords at gauss points More...
 
template<int DIM = 3>
FTensor::Tensor1< FTensor::PackPtr< double *, 3 >, DIM > getFTensor1TangentAtGaussPts ()
 Get tangent vector at integration points. More...
 
MoFEMErrorCode loopSideFaces (const string fe_name, FaceElementForcesAndSourcesCoreOnSide &fe_side)
 
template<>
FTensor::Tensor1< FTensor::PackPtr< double *, 3 >, 3 > getFTensor1TangentAtGaussPts ()
 
- Public Member Functions inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
 UserDataOperator (const FieldSpace space, const char type=OPSPACE, const bool symm=true)
 
 UserDataOperator (const std::string field_name, const char type, const bool symm=true)
 
 UserDataOperator (const std::string row_field_name, const std::string col_field_name, const char type, const bool symm=true)
 
boost::shared_ptr< const NumeredEntFiniteElementgetNumeredEntFiniteElementPtr () const
 Return raw pointer to NumeredEntFiniteElement. More...
 
EntityHandle getFEEntityHandle () const
 Return finite element entity handle. More...
 
int getFEDim () const
 Get dimension of finite element. More...
 
EntityType getFEType () const
 Get dimension of finite element. More...
 
boost::weak_ptr< SideNumbergetSideNumberPtr (const int side_number, const EntityType type)
 Get the side number pointer. More...
 
EntityHandle getSideEntity (const int side_number, const EntityType type)
 Get the side entity. More...
 
int getNumberOfNodesOnElement () const
 Get the number of nodes on finite element. More...
 
MoFEMErrorCode getProblemRowIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 Get row indices. More...
 
MoFEMErrorCode getProblemColIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 Get col indices. More...
 
const FEMethodgetFEMethod () const
 Return raw pointer to Finite Element Method object. More...
 
int getOpType () const
 Get operator types. More...
 
void setOpType (const OpType type)
 Set operator type. More...
 
void addOpType (const OpType type)
 Add operator type. More...
 
int getNinTheLoop () const
 get number of finite element in the loop More...
 
int getLoopSize () const
 get size of elements in the loop More...
 
std::string getFEName () const
 Get name of the element. More...
 
ForcesAndSourcesCoregetPtrFE () const
 
ForcesAndSourcesCoregetSidePtrFE () const
 
ForcesAndSourcesCoregetRefinePtrFE () const
 
const PetscData::SwitchesgetDataCtx () const
 
const KspMethod::KSPContext getKSPCtx () const
 
const SnesMethod::SNESContext getSNESCtx () const
 
const TSMethod::TSContext getTSCtx () const
 
Vec getKSPf () const
 
Mat getKSPA () const
 
Mat getKSPB () const
 
Vec getSNESf () const
 
Vec getSNESx () const
 
Mat getSNESA () const
 
Mat getSNESB () const
 
Vec getTSu () const
 
Vec getTSu_t () const
 
Vec getTSu_tt () const
 
Vec getTSf () const
 
Mat getTSA () const
 
Mat getTSB () const
 
int getTSstep () const
 
double getTStime () const
 
double getTStimeStep () const
 
double getTSa () const
 
double getTSaa () const
 
MatrixDoublegetGaussPts ()
 matrix of integration (Gauss) points for Volume Element More...
 
auto getFTensor0IntegrationWeight ()
 Get integration weights. More...
 
MatrixDoublegetCoordsAtGaussPts ()
 Gauss points and weight, matrix (nb. of points x 3) More...
 
auto getFTensor1CoordsAtGaussPts ()
 Get coordinates at integration points assuming linear geometry. More...
 
double getMeasure () const
 get measure of element More...
 
doublegetMeasure ()
 get measure of element More...
 
MoFEMErrorCode loopSide (const string &fe_name, ForcesAndSourcesCore *side_fe, const size_t dim, const EntityHandle ent_for_side=0, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User call this function to loop over elements on the side of face. This function calls finite element with is operator to do calculations. More...
 
MoFEMErrorCode loopThis (const string &fe_name, ForcesAndSourcesCore *parent_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User call this function to loop over parent elements. This function calls finite element with is operator to do calculations. More...
 
MoFEMErrorCode loopParent (const string &fe_name, ForcesAndSourcesCore *parent_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User call this function to loop over parent elements. This function calls finite element with is operator to do calculations. More...
 
MoFEMErrorCode loopChildren (const string &fe_name, ForcesAndSourcesCore *child_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User call this function to loop over parent elements. This function calls finite element with is operator to do calculations. More...
 
- Public Member Functions inherited from MoFEM::DataOperator
 DataOperator (const bool symm=true)
 
virtual ~DataOperator ()=default
 
virtual MoFEMErrorCode doWork (int row_side, int col_side, EntityType row_type, EntityType col_type, EntitiesFieldData::EntData &row_data, EntitiesFieldData::EntData &col_data)
 Operator for bi-linear form, usually to calculate values on left hand side. More...
 
virtual MoFEMErrorCode opLhs (EntitiesFieldData &row_data, EntitiesFieldData &col_data)
 
virtual MoFEMErrorCode doWork (int side, EntityType type, EntitiesFieldData::EntData &data)
 Operator for linear form, usually to calculate values on right hand side. More...
 
virtual MoFEMErrorCode opRhs (EntitiesFieldData &data, const bool error_if_no_base=false)
 
bool getSymm () const
 Get if operator uses symmetry of DOFs or not. More...
 
void setSymm ()
 set if operator is executed taking in account symmetry More...
 
void unSetSymm ()
 unset if operator is executed for non symmetric problem More...
 

Private Attributes

VectorDouble vecF
 
Range natural_bd_ents
 

Additional Inherited Members

- Public Types inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
enum  OpType {
  OPROW = 1 << 0 , OPCOL = 1 << 1 , OPROWCOL = 1 << 2 , OPSPACE = 1 << 3 ,
  OPLAST = 1 << 3
}
 Controls loop over entities on element. More...
 
- Public Types inherited from MoFEM::DataOperator
using DoWorkLhsHookFunType = boost::function< MoFEMErrorCode(DataOperator *op_ptr, int row_side, int col_side, EntityType row_type, EntityType col_type, EntitiesFieldData::EntData &row_data, EntitiesFieldData::EntData &col_data)>
 
using DoWorkRhsHookFunType = boost::function< MoFEMErrorCode(DataOperator *op_ptr, int side, EntityType type, EntitiesFieldData::EntData &data)>
 
- Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
char opType
 
std::string rowFieldName
 
std::string colFieldName
 
FieldSpace sPace
 
- Public Attributes inherited from MoFEM::DataOperator
DoWorkLhsHookFunType doWorkLhsHook
 
DoWorkRhsHookFunType doWorkRhsHook
 
bool sYmm
 If true assume that matrix is symmetric structure. More...
 
std::array< bool, MBMAXTYPE > doEntities
 If true operator is executed for entity. More...
 
booldoVertices
 \deprectaed If false skip vertices More...
 
booldoEdges
 \deprectaed If false skip edges More...
 
booldoQuads
 \deprectaed More...
 
booldoTris
 \deprectaed More...
 
booldoTets
 \deprectaed More...
 
booldoPrisms
 \deprectaed More...
 
- Static Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
static const char *const OpTypeNames []
 
- Protected Member Functions inherited from MoFEM::EdgeElementForcesAndSourcesCore::UserDataOperator
MoFEMErrorCode setPtrFE (ForcesAndSourcesCore *ptr)
 
virtual MoFEMErrorCode setPtrFE (ForcesAndSourcesCore *ptr)
 
- Protected Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
ForcesAndSourcesCoreptrFE
 

Detailed Description

Definition at line 490 of file rd_stdOperators.hpp.

Constructor & Destructor Documentation

◆ OpAssembleNaturalBCRhs()

StdRDOperators::OpAssembleNaturalBCRhs::OpAssembleNaturalBCRhs ( std::string  mass_field,
Range natural_bd_ents 
)
inline

Definition at line 492 of file rd_stdOperators.hpp.

493 : OpBoundaryEle(mass_field, OpBoundaryEle::OPROW),
495 cerr << "OpAssembleNaturalBCRhsTau()" << endl;
496 }
BoundaryEle::UserDataOperator OpBoundaryEle
@ OPROW
operator doWork function is executed on FE rows

Member Function Documentation

◆ doWork()

MoFEMErrorCode StdRDOperators::OpAssembleNaturalBCRhs::doWork ( int  side,
EntityType  type,
EntData data 
)
inline

Definition at line 498 of file rd_stdOperators.hpp.

498 {
500 const int nb_dofs = data.getIndices().size();
501
502 if (nb_dofs) {
503 EntityHandle row_side_ent = getFEEntityHandle();
504 bool is_natural =
505 (natural_bd_ents.find(row_side_ent) != natural_bd_ents.end());
506 if (is_natural) {
507 // cerr << "In NaturalBCRhsTau..." << endl;
508 vecF.resize(nb_dofs, false);
509 vecF.clear();
510 const int nb_integration_pts = getGaussPts().size2();
511 auto t_row_base = data.getFTensor0N();
512
513 auto dir = getDirection();
514 FTensor::Tensor1<double, 3> t_normal(-dir[1], dir[0], dir[2]);
516 auto t_w = getFTensor0IntegrationWeight();
517 const double pi = 3.141592653589793;
518 const double ct = getFEMethod()->ts_t;
519 for (int gg = 0; gg != nb_integration_pts; ++gg) {
520 const double a = t_w;
521 double x = getCoordsAtGaussPts()(gg, 0);
522 double y = getCoordsAtGaussPts()(gg, 1);
523
524 double mm = -10 * 8 * pi * cos(2 * pi * x) * sin(2 * pi * y) *
525 sin(2 * pi * ct);
526 double nn = -10 * 8 * pi * sin(2 * pi * x) * cos(2 * pi * y) *
527 sin(2 * pi * ct);
528
529 FTensor::Tensor1<double, 3> t_bd_val(mm, nn, 0.0);
530 double h = t_bd_val(i) * t_normal(i);
531 for (int rr = 0; rr != nb_dofs; ++rr) {
532 vecF[rr] += t_row_base * h * a;
533 ++t_row_base;
534 }
535 ++t_w;
536 }
537 CHKERR VecSetOption(getFEMethod()->ts_F, VEC_IGNORE_NEGATIVE_INDICES,
538 PETSC_TRUE);
539 CHKERR VecSetValues(getFEMethod()->ts_F, data, &*vecF.begin(),
540 ADD_VALUES);
541 }
542 }
544 }
constexpr double a
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:346
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:416
#define CHKERR
Inline error check.
Definition: definitions.h:535
MoFEMErrorCode VecSetValues(Vec V, const EntitiesFieldData::EntData &data, const double *ptr, InsertMode iora)
Assemble PETSc vector.
FTensor::Index< 'i', 3 > i
double h
FTensor::Tensor0< FTensor::PackPtr< double *, 1 > > getFTensor0N(const FieldApproximationBase base)
Get base function as Tensor0.
const VectorInt & getIndices() const
Get global indices of dofs on entity.
EntityHandle getFEEntityHandle() const
Return finite element entity handle.
MatrixDouble & getCoordsAtGaussPts()
Gauss points and weight, matrix (nb. of points x 3)
auto getFTensor0IntegrationWeight()
Get integration weights.
const FEMethod * getFEMethod() const
Return raw pointer to Finite Element Method object.
MatrixDouble & getGaussPts()
matrix of integration (Gauss) points for Volume Element
PetscReal ts_t
time

Member Data Documentation

◆ natural_bd_ents

Range StdRDOperators::OpAssembleNaturalBCRhs::natural_bd_ents
private

Definition at line 548 of file rd_stdOperators.hpp.

◆ vecF

VectorDouble StdRDOperators::OpAssembleNaturalBCRhs::vecF
private

Definition at line 547 of file rd_stdOperators.hpp.


The documentation for this struct was generated from the following file: