autotoc_md32

jupyter: jupytext: formats: ipynb,md text_representation: extension: .md format_name: markdown format_version: '1.3' jupytext_version: 1.16.0 kernelspec: display_name: Python 3 (ipykernel) language: python

name: python3

This notebook is for installing a Release version of what you might have changed during your exercises with debugging.

‍Do not run this notebook if you have not run install_from_source_Debug

If you have run this notebook before and just want to recompile the latest changes, run the last cell only.

Print User Id

id $UID

Install MoFEM core - Release version

export TARGET=x86_64
spack --config-scope /mofem_install/spack_config_dir dev-build -j4 \
  --source-path $HOME/mofem_install/mofem-cephas \
  --keep-prefix \
  mofem-cephas@lukasz~copy_user_modules \
  target=$TARGET build_type=Release install_id=$UID ^petsc+X ^boost+python+numpy

Check existing installations of mofem-cephas

export TARGET=x86_64

spack --config-scope /mofem_install/spack_config_dir find -lv mofem-cephas install_id=$UID

Install updated user modules which you have ammended.

spack --config-scope /mofem_install/spack_config_dir dev-build -j4 \
  --source-path $HOME/mofem_install/mofem-cephas/mofem/users_modules \
  mofem-users-modules@lukasz build_type=Release install_id=$UID  \
  ^mofem-cephas@lukasz+adol-c~copy_user_modules~docker~ipo+med+mgis~shared+slepc+tetgen build_system=cmake build_type=Release dev_path=/mofem_install/jupyter/$USER/mofem_install/mofem-cephas install_id=$UID \
  ^petsc+X ^boost+python+numpy

Check existing installations of mofem-users-modules

export TARGET=x86_64

spack --config-scope /mofem_install/spack_config_dir find -lv mofem-users-modules install_id=$UID

Create symbolic links to the Release version of the code

rm -rf um_view_release

spack view symlink -i um_view_release mofem-users-modules build_type=Release install_id=$UID

To run the notebooks provided with the amended version of the code, replace all of the um_view in the path definitions in the notebooks you want to run with um_view_release.

Cell to run to update changes when debugging

(assuming you run all of the cells once before)

cd mofem_install/mofem-cephas/mofem/users_modules/um-build-Release-* && make -j4 install