pipeline_install.sh

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#!/bin/bash
set -euo pipefail
IFS=$'\n\t'
 
###############################################
# This script is just to test the installation 
# via bitbucket-pipelines.
# For actual installation refer to the website
###############################################
 
###############################################
### CONFIGURATION
###############################################
 
REQUIRED_SPACK_VERSION="0.23.1"
SPACK_TARBALL_URL="https://github.com/spack/spack/archive/refs/tags/v${REQUIRED_SPACK_VERSION}.tar.gz"
REPO_URL="https://bitbucket.org/mofem/mofem-cephas.git"
REPO_URL_UM="https://bitbucket.org/mofem/um_eshelbian_plasticity.git"
 
export MOFEM_INSTALL_DIR=$HOME/mofem_install
export SPACK_ROOT=$MOFEM_INSTALL_DIR/spack
export MOFEM_REPO=$MOFEM_INSTALL_DIR/mofem-cephas
export MOFEM_SRC_DIR=$MOFEM_REPO
export MOFEM_SPACK_GIT_DIR="$MOFEM_INSTALL_DIR/mofem-spack-repo"
export TZ=Europe/London
export DEBIAN_FRONTEND=noninteractive
 
SPACK_MAJOR_VERSION="${REQUIRED_SPACK_VERSION%%.*}"
 
if [ "$SPACK_MAJOR_VERSION" -ge 1 ]; then
  export MOFEM_SPACK_REPO_DIR="$MOFEM_SPACK_GIT_DIR/spack_repo/mofem"
else
  export MOFEM_SPACK_REPO_DIR="$MOFEM_SPACK_GIT_DIR"
fi
 
###############################################
### CLI-PARSING & FLAGS
###############################################
CI_MODE=false
ASSUME_YES=false
VERBOSE=false
DRY_RUN=false
 
show_help() {
cat <<EOF
Usage: ${0##*/} [OPTIONS]
  -c, --ci         Run non-interactive CI mode
  -y, --yes        Assume yes for prompts
  -v, --verbose    Enable verbose logs
      --dry-run    Print actions but don't run them
  -h, --help       Show this help
EOF
}
 
log() {
  if [ "${VERBOSE:-false}" = true ]; then
    printf "[%s] %s\n" "$(date -u +%Y-%m-%dT%H:%M:%SZ)" "$*"
  fi
}
 
while [ $# -gt 0 ]; do
  case "$1" in
    -c|--ci) CI_MODE=true; shift ;;
    -y|--yes|--batch) ASSUME_YES=true; shift ;;
    -v|--verbose) VERBOSE=true; shift ;;
    --dry-run) DRY_RUN=true; shift ;;
    -h|--help) show_help; exit 0 ;;
    *) break ;;
  esac
done
 
if [ "$CI_MODE" = true ] || [ ! -t 0 ]; then
  IS_INTERACTIVE=false
else
  IS_INTERACTIVE=true
fi
 
###############################################
### DEFAULT BUILD SETTINGS
###############################################
MOFEM_BRANCH=${MOFEM_BRANCH:-Version0.15.6}
MOFEM_BRANCH_UM=${MOFEM_BRANCH_UM:-Version0.15.7}
VERSION=${VERSION:-Version0.15.7}
BUILD_TYPE=${BUILD_TYPE:-Release}
INSTALL_TYPE=${INSTALL_TYPE:-user}
TEST_INSTALLATION=${TEST_INSTALLATION:-yes}
MOFEM_COMPILER_SPEC=${MOFEM_COMPILER_SPEC:-}
 
###############################################
### PRIVILEGE HANDLING
###############################################
if [ "$(id -u)" -eq 0 ]; then
  SUDO=""
else
  if command -v sudo >/dev/null 2>&1; then
    SUDO="sudo"
  else
    echo "This script requires sudo."
    exit 1
  fi
fi
 
###############################################
### CREATE DIRECTORIES
###############################################
mkdir -p "$MOFEM_INSTALL_DIR" "$MOFEM_REPO" "$MOFEM_SPACK_GIT_DIR"
 
###############################################
### SYSTEM PACKAGES
###############################################
$SUDO apt-get update
$SUDO apt-get install -y build-essential pkg-config cmake git curl python3 gfortran libssl-dev libcurl4-openssl-dev
 
##################################################
### FUNCTION: Install Spack only if not present
##################################################
install_spack() {
  echo "Checking Spack installation..."
 
  if [ -x "$SPACK_ROOT/bin/spack" ]; then
    INSTALLED_VERSION="$("$SPACK_ROOT/bin/spack" --version | awk '{print $NF}')"
    if [ "$INSTALLED_VERSION" = "$REQUIRED_SPACK_VERSION" ]; then
      echo "Spack $INSTALLED_VERSION already installed"
      return
    else
      echo "Spack version mismatch: found $INSTALLED_VERSION, need $REQUIRED_SPACK_VERSION"
      rm -rf "$SPACK_ROOT"
    fi
  fi
 
  echo "⬇ Installing Spack $REQUIRED_SPACK_VERSION..."
  curl -L "$SPACK_TARBALL_URL" -o /tmp/spack.tar.gz
  tar -xzf /tmp/spack.tar.gz -C "$MOFEM_INSTALL_DIR"
  mv "$MOFEM_INSTALL_DIR/spack-$REQUIRED_SPACK_VERSION" "$SPACK_ROOT"
}
 
##################################################
### FUNCTION: Ensure Spack repos & environment
##################################################
ensure_spack_repo() {
  if ! spack repo list | grep -q "$MOFEM_SPACK_REPO_DIR"; then
    echo "Registering Spack repo"
    spack repo add "$MOFEM_SPACK_REPO_DIR"
  else
    echo "Spack repo already registered"
  fi
}
 
ensure_env() {
  if [ ! -d "$SPACK_ROOT/var/spack/environments/mofem" ]; then
    echo "Creating Spack env 'mofem'"
    spack env create mofem
  else
    echo "Spack env 'mofem' exists"
  fi
  spack env activate mofem
}
 
ensure_add() {
  local spec="$1"
  if ! spack find | grep -q "$(echo $spec | cut -d@ -f1)"; then
    echo "Adding spec: $spec"
    spack add $spec
  else
    echo "Spec already exists: $spec"
  fi
}
 
###############################################
### SETUP & CONFIGURE SPACK
###############################################
install_spack
 
export PATH="$SPACK_ROOT/bin:$PATH"
set +u
source "$SPACK_ROOT/share/spack/setup-env.sh"
set -u
 
 
git clone --branch develop $REPO_URL $MOFEM_REPO
git clone --branch $MOFEM_BRANCH_UM $REPO_URL_UM $MOFEM_REPO/users_modules/um_eshelbian_plasticity
 
 
# ensure_spack_repo
spack repo add $MOFEM_REPO
spack repo add $MOFEM_REPO/users_modules/um_eshelbian_plasticity
ensure_env
if [ -n "$MOFEM_COMPILER_SPEC" ]; then
  echo "Refreshing Spack compiler list"
  spack compiler find
  echo "Preferring compiler: $MOFEM_COMPILER_SPEC"
  spack config add "packages:all:compiler:[$MOFEM_COMPILER_SPEC]"
fi
 
ensure_add python
ensure_add py-numpy
ensure_add "boost+python+numpy"
 
if [ "$INSTALL_TYPE" = "user" ]; then
#   MOFEM_SPEC="mofem-cephas@${VERSION}~mgis install_id=0 ^petsc+X"
  MOFEM_SPEC="mofem-mixed-fracture-module@${VERSION} ^petsc+X"
  ensure_add "$MOFEM_SPEC"
  
fi
 
###############################################
### BUILD & INSTALL
###############################################
spack concretize -f
spack install --only=dependencies mofem-cephas
 
echo "Installing MoFEM..."
spack install -v --test=root
spack clean -a
 
spack env view enable $HOME/mofem_view
 
###############################################
### FINAL MESSAGE
###############################################
echo "✅ MoFEM installed successfully"
echo "➡ Activate with:  spack env activate mofem"
echo "➡ MoFEM executables view: $HOME/mofem_view"