v0.14.0
Public Member Functions | Public Attributes | List of all members
MixTransport::UnsaturatedFlowElement::OpEvaluateInitiallHead Struct Reference

#include <users_modules/tutorials/cor-0to1/src/UnsaturatedFlow.hpp>

Inheritance diagram for MixTransport::UnsaturatedFlowElement::OpEvaluateInitiallHead:
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Collaboration diagram for MixTransport::UnsaturatedFlowElement::OpEvaluateInitiallHead:
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Public Member Functions

 OpEvaluateInitiallHead (UnsaturatedFlowElement &ctx, const std::string &val_name)
 
MoFEMErrorCode doWork (int side, EntityType type, EntitiesFieldData::EntData &data)
 
- Public Member Functions inherited from MoFEM::VolumeElementForcesAndSourcesCore::UserDataOperator
int getNumNodes ()
 get element number of nodes More...
 
const EntityHandlegetConn ()
 get element connectivity More...
 
double getVolume () const
 element volume (linear geometry) More...
 
doublegetVolume ()
 element volume (linear geometry) More...
 
FTensor::Tensor2< double *, 3, 3 > & getJac ()
 get element Jacobian More...
 
FTensor::Tensor2< double *, 3, 3 > & getInvJac ()
 get element inverse Jacobian More...
 
VectorDoublegetCoords ()
 nodal coordinates More...
 
VolumeElementForcesAndSourcesCoregetVolumeFE () const
 return pointer to Generic Volume Finite Element object More...
 
- Public Member Functions inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
 UserDataOperator (const FieldSpace space, const char type=OPSPACE, const bool symm=true)
 
 UserDataOperator (const std::string field_name, const char type, const bool symm=true)
 
 UserDataOperator (const std::string row_field_name, const std::string col_field_name, const char type, const bool symm=true)
 
boost::shared_ptr< const NumeredEntFiniteElementgetNumeredEntFiniteElementPtr () const
 Return raw pointer to NumeredEntFiniteElement. More...
 
EntityHandle getFEEntityHandle () const
 Return finite element entity handle. More...
 
int getFEDim () const
 Get dimension of finite element. More...
 
EntityType getFEType () const
 Get dimension of finite element. More...
 
boost::weak_ptr< SideNumbergetSideNumberPtr (const int side_number, const EntityType type)
 Get the side number pointer. More...
 
EntityHandle getSideEntity (const int side_number, const EntityType type)
 Get the side entity. More...
 
int getNumberOfNodesOnElement () const
 Get the number of nodes on finite element. More...
 
MoFEMErrorCode getProblemRowIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 Get row indices. More...
 
MoFEMErrorCode getProblemColIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 Get col indices. More...
 
const FEMethodgetFEMethod () const
 Return raw pointer to Finite Element Method object. More...
 
int getOpType () const
 Get operator types. More...
 
void setOpType (const OpType type)
 Set operator type. More...
 
void addOpType (const OpType type)
 Add operator type. More...
 
int getNinTheLoop () const
 get number of finite element in the loop More...
 
int getLoopSize () const
 get size of elements in the loop More...
 
std::string getFEName () const
 Get name of the element. More...
 
ForcesAndSourcesCoregetPtrFE () const
 
ForcesAndSourcesCoregetSidePtrFE () const
 
ForcesAndSourcesCoregetRefinePtrFE () const
 
const PetscData::SwitchesgetDataCtx () const
 
const KspMethod::KSPContext getKSPCtx () const
 
const SnesMethod::SNESContext getSNESCtx () const
 
const TSMethod::TSContext getTSCtx () const
 
Vec getKSPf () const
 
Mat getKSPA () const
 
Mat getKSPB () const
 
Vec getSNESf () const
 
Vec getSNESx () const
 
Mat getSNESA () const
 
Mat getSNESB () const
 
Vec getTSu () const
 
Vec getTSu_t () const
 
Vec getTSu_tt () const
 
Vec getTSf () const
 
Mat getTSA () const
 
Mat getTSB () const
 
int getTSstep () const
 
double getTStime () const
 
double getTStimeStep () const
 
double getTSa () const
 
double getTSaa () const
 
MatrixDoublegetGaussPts ()
 matrix of integration (Gauss) points for Volume Element More...
 
auto getFTensor0IntegrationWeight ()
 Get integration weights. More...
 
MatrixDoublegetCoordsAtGaussPts ()
 Gauss points and weight, matrix (nb. of points x 3) More...
 
auto getFTensor1CoordsAtGaussPts ()
 Get coordinates at integration points assuming linear geometry. More...
 
double getMeasure () const
 get measure of element More...
 
doublegetMeasure ()
 get measure of element More...
 
MoFEMErrorCode loopSide (const string &fe_name, ForcesAndSourcesCore *side_fe, const size_t dim, const EntityHandle ent_for_side=0, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy, AdjCache *adj_cache=nullptr)
 User calls this function to loop over elements on the side of face. This function calls finite element with its operator to do calculations. More...
 
MoFEMErrorCode loopThis (const string &fe_name, ForcesAndSourcesCore *this_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User calls this function to loop over the same element using a different set of integration points. This function calls finite element with its operator to do calculations. More...
 
MoFEMErrorCode loopParent (const string &fe_name, ForcesAndSourcesCore *parent_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User calls this function to loop over parent elements. This function calls finite element with its operator to do calculations. More...
 
MoFEMErrorCode loopChildren (const string &fe_name, ForcesAndSourcesCore *child_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User calls this function to loop over parent elements. This function calls finite element with its operator to do calculations. More...
 
- Public Member Functions inherited from MoFEM::DataOperator
 DataOperator (const bool symm=true)
 
virtual ~DataOperator ()=default
 
virtual MoFEMErrorCode doWork (int row_side, int col_side, EntityType row_type, EntityType col_type, EntitiesFieldData::EntData &row_data, EntitiesFieldData::EntData &col_data)
 Operator for bi-linear form, usually to calculate values on left hand side. More...
 
virtual MoFEMErrorCode opLhs (EntitiesFieldData &row_data, EntitiesFieldData &col_data)
 
virtual MoFEMErrorCode doWork (int side, EntityType type, EntitiesFieldData::EntData &data)
 Operator for linear form, usually to calculate values on right hand side. More...
 
virtual MoFEMErrorCode opRhs (EntitiesFieldData &data, const bool error_if_no_base=false)
 
bool getSymm () const
 Get if operator uses symmetry of DOFs or not. More...
 
void setSymm ()
 set if operator is executed taking in account symmetry More...
 
void unSetSymm ()
 unset if operator is executed for non symmetric problem More...
 

Public Attributes

UnsaturatedFlowElementcTx
 
MatrixDouble nN
 
VectorDouble nF
 
- Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
char opType
 
std::string rowFieldName
 
std::string colFieldName
 
FieldSpace sPace
 
- Public Attributes inherited from MoFEM::DataOperator
DoWorkLhsHookFunType doWorkLhsHook
 
DoWorkRhsHookFunType doWorkRhsHook
 
bool sYmm
 If true assume that matrix is symmetric structure. More...
 
std::array< bool, MBMAXTYPE > doEntities
 If true operator is executed for entity. More...
 
booldoVertices
 \deprectaed If false skip vertices More...
 
booldoEdges
 \deprectaed If false skip edges More...
 
booldoQuads
 \deprectaed More...
 
booldoTris
 \deprectaed More...
 
booldoTets
 \deprectaed More...
 
booldoPrisms
 \deprectaed More...
 

Additional Inherited Members

- Public Types inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
enum  OpType {
  OPROW = 1 << 0, OPCOL = 1 << 1, OPROWCOL = 1 << 2, OPSPACE = 1 << 3,
  OPLAST = 1 << 3
}
 Controls loop over entities on element. More...
 
using AdjCache = std::map< EntityHandle, std::vector< boost::weak_ptr< NumeredEntFiniteElement > >>
 
- Public Types inherited from MoFEM::DataOperator
using DoWorkLhsHookFunType = boost::function< MoFEMErrorCode(DataOperator *op_ptr, int row_side, int col_side, EntityType row_type, EntityType col_type, EntitiesFieldData::EntData &row_data, EntitiesFieldData::EntData &col_data)>
 
using DoWorkRhsHookFunType = boost::function< MoFEMErrorCode(DataOperator *op_ptr, int side, EntityType type, EntitiesFieldData::EntData &data)>
 
- Static Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
static const char *const OpTypeNames []
 
- Protected Member Functions inherited from MoFEM::VolumeElementForcesAndSourcesCore::UserDataOperator
MoFEMErrorCode setPtrFE (ForcesAndSourcesCore *ptr)
 
- Protected Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
ForcesAndSourcesCoreptrFE
 

Detailed Description

Definition at line 846 of file UnsaturatedFlow.hpp.

Constructor & Destructor Documentation

◆ OpEvaluateInitiallHead()

MixTransport::UnsaturatedFlowElement::OpEvaluateInitiallHead::OpEvaluateInitiallHead ( UnsaturatedFlowElement ctx,
const std::string &  val_name 
)
inline
Examples
UnsaturatedFlow.hpp.

Definition at line 849 of file UnsaturatedFlow.hpp.

Member Function Documentation

◆ doWork()

MoFEMErrorCode MixTransport::UnsaturatedFlowElement::OpEvaluateInitiallHead::doWork ( int  side,
EntityType  type,
EntitiesFieldData::EntData data 
)
inline
Examples
UnsaturatedFlow.hpp.

Definition at line 858 of file UnsaturatedFlow.hpp.

859  {
861  if (data.getFieldData().size() == 0)
863  auto nb_dofs = data.getFieldData().size();
864  if (nb_dofs != data.getN().size2()) {
865  SETERRQ(PETSC_COMM_WORLD, MOFEM_DATA_INCONSISTENCY,
866  "wrong number of dofs");
867  }
868  nN.resize(nb_dofs, nb_dofs, false);
869  nF.resize(nb_dofs, false);
870  nN.clear();
871  nF.clear();
872 
873  // Get EntityHandle of the finite element
874  EntityHandle fe_ent = getFEEntityHandle();
875 
876 
877  // Get material block id
878  int block_id;
879  CHKERR cTx.getMaterial(fe_ent, block_id);
880  // Get material block
881  boost::shared_ptr<GenericMaterial> &block_data = cTx.dMatMap.at(block_id);
882 
883  // loop over integration points
884  auto nb_gauss_pts = getGaussPts().size2();
885  for (auto gg = 0; gg != nb_gauss_pts; gg++) {
886  // get coordinates at integration point
887  block_data->x = getCoordsAtGaussPts()(gg, 0);
888  block_data->y = getCoordsAtGaussPts()(gg, 1);
889  block_data->z = getCoordsAtGaussPts()(gg, 2);
890  // get weight for integration rule
891  double alpha = getGaussPts()(2, gg);
892  nN += alpha * outer_prod(data.getN(gg), data.getN(gg));
893  nF += alpha * block_data->initialPcEval() * data.getN(gg);
894  }
895 
896  // factor matrix
898  // solve local problem
899  cholesky_solve(nN, nF, ublas::lower());
900 
901  // set solution to vector
902  CHKERR VecSetValues(cTx.D1, nb_dofs, &*data.getIndices().begin(),
903  &*nF.begin(), INSERT_VALUES);
904 
906  }

Member Data Documentation

◆ cTx

UnsaturatedFlowElement& MixTransport::UnsaturatedFlowElement::OpEvaluateInitiallHead::cTx
Examples
UnsaturatedFlow.hpp.

Definition at line 848 of file UnsaturatedFlow.hpp.

◆ nF

VectorDouble MixTransport::UnsaturatedFlowElement::OpEvaluateInitiallHead::nF
Examples
UnsaturatedFlow.hpp.

Definition at line 856 of file UnsaturatedFlow.hpp.

◆ nN

MatrixDouble MixTransport::UnsaturatedFlowElement::OpEvaluateInitiallHead::nN
Examples
UnsaturatedFlow.hpp.

Definition at line 855 of file UnsaturatedFlow.hpp.


The documentation for this struct was generated from the following file:
MoFEMFunctionReturnHot
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:447
EntityHandle
MixTransport::UnsaturatedFlowElement::OpEvaluateInitiallHead::nF
VectorDouble nF
Definition: UnsaturatedFlow.hpp:856
MoFEM::VecSetValues
MoFEMErrorCode VecSetValues(Vec V, const EntitiesFieldData::EntData &data, const double *ptr, InsertMode iora)
Assemble PETSc vector.
Definition: EntitiesFieldData.hpp:1576
MoFEM::ForcesAndSourcesCore::UserDataOperator::getGaussPts
MatrixDouble & getGaussPts()
matrix of integration (Gauss) points for Volume Element
Definition: ForcesAndSourcesCore.hpp:1235
CHKERR
#define CHKERR
Inline error check.
Definition: definitions.h:535
MixTransport::UnsaturatedFlowElement::OpEvaluateInitiallHead::nN
MatrixDouble nN
Definition: UnsaturatedFlow.hpp:855
MixTransport::UnsaturatedFlowElement::dMatMap
MaterialsDoubleMap dMatMap
materials database
Definition: UnsaturatedFlow.hpp:119
MoFEM::VolumeElementForcesAndSourcesCore::UserDataOperator
friend class UserDataOperator
Definition: VolumeElementForcesAndSourcesCore.hpp:105
MoFEM::ForcesAndSourcesCore::UserDataOperator::getCoordsAtGaussPts
MatrixDouble & getCoordsAtGaussPts()
Gauss points and weight, matrix (nb. of points x 3)
Definition: ForcesAndSourcesCore.hpp:1264
MixTransport::UnsaturatedFlowElement::D1
Vec D1
Vector with inital head capillary pressure.
Definition: UnsaturatedFlow.hpp:1609
MoFEM::ForcesAndSourcesCore::UserDataOperator::getFEEntityHandle
EntityHandle getFEEntityHandle() const
Return finite element entity handle.
Definition: ForcesAndSourcesCore.hpp:1003
MOFEM_DATA_INCONSISTENCY
@ MOFEM_DATA_INCONSISTENCY
Definition: definitions.h:31
cholesky_decompose
size_t cholesky_decompose(const MATRIX &A, TRIA &L)
decompose the symmetric positive definit matrix A into product L L^T.
Definition: cholesky.hpp:52
cholesky_solve
void cholesky_solve(const TRIA &L, VEC &x, ublas::lower)
solve system L L^T x = b inplace
Definition: cholesky.hpp:221
MixTransport::UnsaturatedFlowElement::getMaterial
virtual MoFEMErrorCode getMaterial(const EntityHandle ent, int &block_id) const
For given element handle get material block Id.
Definition: UnsaturatedFlow.hpp:127
MoFEMFunctionReturn
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:416
MoFEMFunctionBegin
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:346
MixTransport::UnsaturatedFlowElement::OpEvaluateInitiallHead::cTx
UnsaturatedFlowElement & cTx
Definition: UnsaturatedFlow.hpp:848
MoFEM::ForcesAndSourcesCore::UserDataOperator::OPROW
@ OPROW
operator doWork function is executed on FE rows
Definition: ForcesAndSourcesCore.hpp:567