v0.14.0
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MoFEM::VolumeElementForcesAndSourcesCore Struct Reference

Volume finite element base. More...

#include <src/finite_elements/VolumeElementForcesAndSourcesCore.hpp>

Inheritance diagram for MoFEM::VolumeElementForcesAndSourcesCore:
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Collaboration diagram for MoFEM::VolumeElementForcesAndSourcesCore:
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Classes

struct  UserDataOperator
 

Public Types

enum  Switches
 
- Public Types inherited from MoFEM::ForcesAndSourcesCore
typedef boost::function< int(int order_row, int order_col, int order_data)> RuleHookFun
 
typedef boost::function< MoFEMErrorCode(ForcesAndSourcesCore *fe_raw_ptr, int order_row, int order_col, int order_data)> GaussHookFun
 
- Public Types inherited from MoFEM::KspMethod
enum  KSPContext { CTX_SETFUNCTION, CTX_OPERATORS, CTX_KSPNONE }
 pass information about context of KSP/DM for with finite element is computed More...
 
- Public Types inherited from MoFEM::PetscData
enum  DataContext {
  CTX_SET_NONE = 0, CTX_SET_F = 1 << 0, CTX_SET_A = 1 << 1, CTX_SET_B = 1 << 2,
  CTX_SET_X = 1 << 3, CTX_SET_DX = 1 << 4, CTX_SET_X_T = 1 << 5, CTX_SET_X_TT = 1 << 6,
  CTX_SET_TIME = 1 << 7
}
 
using Switches = std::bitset< 8 >
 
- Public Types inherited from MoFEM::SnesMethod
enum  SNESContext { CTX_SNESSETFUNCTION, CTX_SNESSETJACOBIAN, CTX_SNESNONE }
 
- Public Types inherited from MoFEM::TSMethod
enum  TSContext {
  CTX_TSSETRHSFUNCTION, CTX_TSSETRHSJACOBIAN, CTX_TSSETIFUNCTION, CTX_TSSETIJACOBIAN,
  CTX_TSTSMONITORSET, CTX_TSNONE
}
 

Public Member Functions

 VolumeElementForcesAndSourcesCore (Interface &m_field)
 
DEPRECATED VolumeElementForcesAndSourcesCore (Interface &m_field, const EntityType type)
 
MoFEMErrorCode operator() ()
 function is run for every finite element More...
 
- Public Member Functions inherited from MoFEM::ForcesAndSourcesCore
 ForcesAndSourcesCore (Interface &m_field)
 
boost::ptr_deque< UserDataOperator > & getOpPtrVector ()
 Use to push back operator for row operator. More...
 
auto & getElementPolynomialBase ()
 Get the Entity Polynomial Base object. More...
 
auto & getUserPolynomialBase ()
 Get the User Polynomial Base object. More...
 
virtual MoFEMErrorCode preProcess ()
 function is run at the beginning of loop More...
 
virtual MoFEMErrorCode postProcess ()
 function is run at the end of loop More...
 
int getMaxDataOrder () const
 Get max order of approximation for data fields. More...
 
int getMaxRowOrder () const
 Get max order of approximation for field in rows. More...
 
int getMaxColOrder () const
 Get max order of approximation for field in columns. More...
 
auto & getEntData (const FieldSpace space, const EntityType type, const int side)
 Get the entity data. More...
 
auto & getDataOnElementBySpaceArray ()
 Get data on entities and space. More...
 
auto & getDerivedDataOnElementBySpaceArray ()
 Get derived data on entities and space. More...
 
- Public Member Functions inherited from MoFEM::FEMethod
MoFEMErrorCode query_interface (boost::typeindex::type_index type_index, UnknownInterface **iface) const
 
 FEMethod ()=default
 
auto getFEName () const
 get finite element name More...
 
auto getDataDofsPtr () const
 
auto getDataVectorDofsPtr () const
 
const FieldEntity_vector_view & getDataFieldEnts () const
 
boost::shared_ptr< FieldEntity_vector_view > & getDataFieldEntsPtr () const
 
auto & getRowFieldEnts () const
 
auto & getRowFieldEntsPtr () const
 
auto & getColFieldEnts () const
 
auto & getColFieldEntsPtr () const
 
auto getRowDofsPtr () const
 
auto getColDofsPtr () const
 
auto getNumberOfNodes () const
 
EntityHandle getFEEntityHandle () const
 
MoFEMErrorCode getNodeData (const std::string field_name, VectorDouble &data, const bool reset_dofs=true)
 
- Public Member Functions inherited from MoFEM::BasicMethod
 BasicMethod ()
 
virtual ~BasicMethod ()=default
 
int getNinTheLoop () const
 get number of evaluated element in the loop More...
 
int getLoopSize () const
 get loop size More...
 
auto getLoHiFERank () const
 Get lo and hi processor rank of iterated entities. More...
 
auto getLoFERank () const
 Get upper rank in loop for iterating elements. More...
 
auto getHiFERank () const
 Get upper rank in loop for iterating elements. More...
 
unsigned int getFieldBitNumber (std::string field_name) const
 
MoFEMErrorCode copyBasicMethod (const BasicMethod &basic)
 Copy data from other base method to this base method. More...
 
boost::weak_ptr< CacheTuple > getCacheWeakPtr () const
 Get the cache weak ptr object. More...
 
- Public Member Functions inherited from MoFEM::KspMethod
 KspMethod ()
 
virtual ~KspMethod ()=default
 
MoFEMErrorCode copyKsp (const KspMethod &ksp)
 copy data form another method More...
 
- Public Member Functions inherited from MoFEM::PetscData
 PetscData ()
 
virtual ~PetscData ()=default
 
MoFEMErrorCode copyPetscData (const PetscData &petsc_data)
 
- Public Member Functions inherited from MoFEM::UnknownInterface
template<class IFACE >
MoFEMErrorCode registerInterface (bool error_if_registration_failed=true)
 Register interface. More...
 
template<class IFACE >
MoFEMErrorCode getInterface (IFACE *&iface) const
 Get interface reference to pointer of interface. More...
 
template<class IFACE >
MoFEMErrorCode getInterface (IFACE **const iface) const
 Get interface pointer to pointer of interface. More...
 
template<class IFACE , typename boost::enable_if< boost::is_pointer< IFACE >, int >::type = 0>
IFACE getInterface () const
 Get interface pointer to pointer of interface. More...
 
template<class IFACE , typename boost::enable_if< boost::is_reference< IFACE >, int >::type = 0>
IFACE getInterface () const
 Get reference to interface. More...
 
template<class IFACE >
IFACE * getInterface () const
 Function returning pointer to interface. More...
 
virtual ~UnknownInterface ()=default
 
- Public Member Functions inherited from MoFEM::SnesMethod
 SnesMethod ()
 
virtual ~SnesMethod ()=default
 
MoFEMErrorCode copySnes (const SnesMethod &snes)
 Copy snes data. More...
 
- Public Member Functions inherited from MoFEM::TSMethod
 TSMethod ()
 
virtual ~TSMethod ()=default
 
MoFEMErrorCode copyTs (const TSMethod &ts)
 Copy TS solver data. More...
 

Public Attributes

std::string meshPositionsFieldName
 
- Public Attributes inherited from MoFEM::ForcesAndSourcesCore
Interface & mField
 
RuleHookFun getRuleHook
 Hook to get rule. More...
 
GaussHookFun setRuleHook
 Set function to calculate integration rule. More...
 
MatrixDouble gaussPts
 Matrix of integration points. More...
 
- Public Attributes inherited from MoFEM::FEMethod
std::string feName
 Name of finite element. More...
 
boost::shared_ptr< const NumeredEntFiniteElement > numeredEntFiniteElementPtr
 
boost::function< bool(FEMethod *fe_method_ptr)> exeTestHook
 Tet if element to skip element. More...
 
- Public Attributes inherited from MoFEM::BasicMethod
int nInTheLoop
 number currently of processed method More...
 
int loopSize
 local number oe methods to process More...
 
std::pair< int, int > loHiFERank
 Llo and hi processor rank of iterated entities. More...
 
int rAnk
 processor rank More...
 
int sIze
 number of processors in communicator More...
 
const RefEntity_multiIndex * refinedEntitiesPtr
 container of mofem dof entities More...
 
const RefElement_multiIndex * refinedFiniteElementsPtr
 container of mofem finite element entities More...
 
const Problem * problemPtr
 raw pointer to problem More...
 
const Field_multiIndex * fieldsPtr
 raw pointer to fields container More...
 
const FieldEntity_multiIndex * entitiesPtr
 raw pointer to container of field entities More...
 
const DofEntity_multiIndex * dofsPtr
 raw pointer container of dofs More...
 
const FiniteElement_multiIndex * finiteElementsPtr
 raw pointer to container finite elements More...
 
const EntFiniteElement_multiIndex * finiteElementsEntitiesPtr
 
const FieldEntityEntFiniteElementAdjacencyMap_multiIndex * adjacenciesPtr
 
boost::function< MoFEMErrorCode()> preProcessHook
 Hook function for pre-processing. More...
 
boost::function< MoFEMErrorCode()> postProcessHook
 Hook function for post-processing. More...
 
boost::function< MoFEMErrorCode()> operatorHook
 Hook function for operator. More...
 
boost::movelib::unique_ptr< bool > vecAssembleSwitch
 
boost::movelib::unique_ptr< bool > matAssembleSwitch
 
boost::weak_ptr< CacheTuple > cacheWeakPtr
 
- Public Attributes inherited from MoFEM::KspMethod
KSPContext ksp_ctx
 Context. More...
 
KSP ksp
 KSP solver. More...
 
Vec & ksp_f
 
Mat & ksp_A
 
Mat & ksp_B
 
- Public Attributes inherited from MoFEM::PetscData
Switches data_ctx
 
Vec f
 
Mat A
 
Mat B
 
Vec x
 
Vec dx
 
Vec x_t
 
Vec x_tt
 
- Public Attributes inherited from MoFEM::SnesMethod
SNESContext snes_ctx
 
SNES snes
 snes solver More...
 
Vec & snes_x
 state vector More...
 
Vec & snes_dx
 solution update More...
 
Vec & snes_f
 residual More...
 
Mat & snes_A
 jacobian matrix More...
 
Mat & snes_B
 preconditioner of jacobian matrix More...
 
- Public Attributes inherited from MoFEM::TSMethod
TS ts
 time solver More...
 
TSContext ts_ctx
 
PetscInt ts_step
 time step number More...
 
PetscReal ts_a
 shift for U_t (see PETSc Time Solver) More...
 
PetscReal ts_aa
 shift for U_tt shift for U_tt More...
 
PetscReal ts_t
 time More...
 
PetscReal ts_dt
 time step size More...
 
Vec & ts_u
 state vector More...
 
Vec & ts_u_t
 time derivative of state vector More...
 
Vec & ts_u_tt
 second time derivative of state vector More...
 
Vec & ts_F
 residual vector More...
 
Mat & ts_A
 
Mat & ts_B
 Preconditioner for ts_A. More...
 

Protected Member Functions

virtual MoFEMErrorCode setIntegrationPts ()
 Set integration points. More...
 
virtual MoFEMErrorCode calculateVolumeAndJacobian ()
 Calculate element volume and Jacobian. More...
 
virtual MoFEMErrorCode calculateCoordinatesAtGaussPts ()
 Calculate coordinate at integration points. More...
 
virtual MoFEMErrorCode getSpaceBaseAndOrderOnElement ()
 Determine approximation space and order of base functions. More...
 
virtual MoFEMErrorCode transformBaseFunctions ()
 Transform base functions based on geometric element Jacobian. More...
 
- Protected Member Functions inherited from MoFEM::ForcesAndSourcesCore
MoFEMErrorCode getEntitySense (const EntityType type, boost::ptr_vector< EntitiesFieldData::EntData > &data) const
 get sense (orientation) of entity More...
 
MoFEMErrorCode getEntityDataOrder (const EntityType type, const FieldSpace space, boost::ptr_vector< EntitiesFieldData::EntData > &data) const
 Get the entity data order. More...
 
template<EntityType type>
MoFEMErrorCode getEntitySense (EntitiesFieldData &data) const
 Get the entity sense (orientation) More...
 
template<EntityType type>
MoFEMErrorCode getEntityDataOrder (EntitiesFieldData &data, const FieldSpace space) const
 Get the entity data order for given space. More...
 
MoFEMErrorCode getFaceNodes (EntitiesFieldData &data) const
 Get nodes on faces. More...
 
MoFEMErrorCode getSpacesAndBaseOnEntities (EntitiesFieldData &data) const
 Get field approximation space and base on entities. More...
 
virtual int getRule (int order_row, int order_col, int order_data)
 another variant of getRule More...
 
virtual MoFEMErrorCode setGaussPts (int order_row, int order_col, int order_data)
 set user specific integration rule More...
 
MoFEMErrorCode calHierarchicalBaseFunctionsOnElement (const FieldApproximationBase b)
 Calculate base functions. More...
 
MoFEMErrorCode calHierarchicalBaseFunctionsOnElement ()
 Calculate base functions. More...
 
MoFEMErrorCode calBernsteinBezierBaseFunctionsOnElement ()
 Calculate Bernstein-Bezier base. More...
 
MoFEMErrorCode createDataOnElement (EntityType type)
 Create a entity data on element object. More...
 
MoFEMErrorCode loopOverOperators ()
 Iterate user data operators. More...
 
template<typename EXTRACTOR >
MoFEMErrorCode getNodesIndices (const int bit_number, FieldEntity_vector_view &ents_field, VectorInt &nodes_indices, VectorInt &local_nodes_indices, EXTRACTOR &&extractor) const
 get node indices More...
 
MoFEMErrorCode getRowNodesIndices (EntitiesFieldData &data, const int bit_number) const
 get row node indices from FENumeredDofEntity_multiIndex More...
 
MoFEMErrorCode getColNodesIndices (EntitiesFieldData &data, const int bit_number) const
 get col node indices from FENumeredDofEntity_multiIndex More...
 
template<typename EXTRACTOR >
MoFEMErrorCode getEntityIndices (EntitiesFieldData &data, const int bit_number, FieldEntity_vector_view &ents_field, const EntityType type_lo, const EntityType type_hi, EXTRACTOR &&extractor) const
 
MoFEMErrorCode getEntityRowIndices (EntitiesFieldData &data, const int bit_number, const EntityType type_lo=MBVERTEX, const EntityType type_hi=MBPOLYHEDRON) const
 
MoFEMErrorCode getEntityColIndices (EntitiesFieldData &data, const int bit_number, const EntityType type_lo=MBVERTEX, const EntityType type_hi=MBPOLYHEDRON) const
 
MoFEMErrorCode getNoFieldIndices (const int bit_number, boost::shared_ptr< FENumeredDofEntity_multiIndex > dofs, VectorInt &nodes_indices) const
 get NoField indices More...
 
MoFEMErrorCode getNoFieldRowIndices (EntitiesFieldData &data, const int bit_number) const
 get col NoField indices More...
 
MoFEMErrorCode getNoFieldColIndices (EntitiesFieldData &data, const int bit_number) const
 get col NoField indices More...
 
MoFEMErrorCode getBitRefLevelOnData ()
 
MoFEMErrorCode getNoFieldFieldData (const int bit_number, VectorDouble &ent_field_data, VectorDofs &ent_field_dofs, VectorFieldEntities &ent_field) const
 Get field data on nodes. More...
 
MoFEMErrorCode getNoFieldFieldData (EntitiesFieldData &data, const int bit_number) const
 
MoFEMErrorCode getNodesFieldData (EntitiesFieldData &data, const int bit_number) const
 Get data on nodes. More...
 
MoFEMErrorCode getEntityFieldData (EntitiesFieldData &data, const int bit_number, const EntityType type_lo=MBVERTEX, const EntityType type_hi=MBPOLYHEDRON) const
 
MoFEMErrorCode getProblemNodesIndices (const std::string &field_name, const NumeredDofEntity_multiIndex &dofs, VectorInt &nodes_indices) const
 get indices of nodal indices which are declared for problem but not this particular element More...
 
MoFEMErrorCode getProblemTypeIndices (const std::string &field_name, const NumeredDofEntity_multiIndex &dofs, EntityType type, int side_number, VectorInt &indices) const
 get indices by type (generic function) which are declared for problem but not this particular element More...
 
MoFEMErrorCode getProblemNodesRowIndices (const std::string &field_name, VectorInt &nodes_indices) const
 
MoFEMErrorCode getProblemTypeRowIndices (const std::string &field_name, EntityType type, int side_number, VectorInt &indices) const
 
MoFEMErrorCode getProblemNodesColIndices (const std::string &field_name, VectorInt &nodes_indices) const
 
MoFEMErrorCode getProblemTypeColIndices (const std::string &field_name, EntityType type, int side_number, VectorInt &indices) const
 
virtual int getRule (int order)
 
virtual MoFEMErrorCode setGaussPts (int order)
 

Protected Attributes

VectorDouble coords
 
MatrixDouble3by3 jAc
 
MatrixDouble3by3 invJac
 
OpSetInvJacH1 opSetInvJacH1
 
OpSetContravariantPiolaTransform opContravariantPiolaTransform
 
OpSetCovariantPiolaTransform opCovariantPiolaTransform
 
OpSetInvJacHdivAndHcurl opSetInvJacHdivAndHcurl
 
double & vOlume
 
int num_nodes
 
const EntityHandle * conn
 
FTensor::Tensor2< double *, 3, 3 > tJac
 
FTensor::Tensor2< double *, 3, 3 > tInvJac
 
- Protected Attributes inherited from MoFEM::ForcesAndSourcesCore
const std::array< boost::shared_ptr< EntitiesFieldData >, LASTSPACE > dataOnElement
 Entity data on element entity rows fields. More...
 
const std::array< boost::shared_ptr< EntitiesFieldData >, LASTSPACE > derivedDataOnElement
 Entity data on element entity columns fields. More...
 
EntitiesFieldData & dataNoField
 
EntitiesFieldData & dataH1
 
EntitiesFieldData & dataHcurl
 
EntitiesFieldData & dataHdiv
 
EntitiesFieldData & dataL2
 
boost::ptr_deque< UserDataOperator > opPtrVector
 Vector of finite element users data operators. More...
 
EntityType lastEvaluatedElementEntityType
 Last evaluated type of element entity. More...
 
MatrixDouble coordsAtGaussPts
 coordinated at gauss points More...
 
double elementMeasure
 

Friends

class UserDataOperator
 

Additional Inherited Members

- Static Public Member Functions inherited from MoFEM::UnknownInterface
static MoFEMErrorCode getLibVersion (Version &version)
 Get library version. More...
 
static MoFEMErrorCode getFileVersion (moab::Interface &moab, Version &version)
 Get database major version. More...
 
static MoFEMErrorCode setFileVersion (moab::Interface &moab, Version version=Version(MoFEM_VERSION_MAJOR, MoFEM_VERSION_MINOR, MoFEM_VERSION_BUILD))
 Get database major version. More...
 
static MoFEMErrorCode getInterfaceVersion (Version &version)
 Get database major version. More...
 
- Static Public Attributes inherited from MoFEM::PetscData
static constexpr Switches CtxSetNone = PetscData::Switches(CTX_SET_NONE)
 
static constexpr Switches CtxSetF = PetscData::Switches(CTX_SET_F)
 
static constexpr Switches CtxSetA = PetscData::Switches(CTX_SET_A)
 
static constexpr Switches CtxSetB = PetscData::Switches(CTX_SET_B)
 
static constexpr Switches CtxSetX = PetscData::Switches(CTX_SET_X)
 
static constexpr Switches CtxSetDX = PetscData::Switches(CTX_SET_DX)
 
static constexpr Switches CtxSetX_T = PetscData::Switches(CTX_SET_X_T)
 
static constexpr Switches CtxSetX_TT = PetscData::Switches(CTX_SET_X_TT)
 
static constexpr Switches CtxSetTime = PetscData::Switches(CTX_SET_TIME)
 

Detailed Description

Volume finite element base.

User is implementing own operator at Gauss point level, by class derived from VolumeElementForcesAndSourcesCore::UserDataOperator. Arbitrary number of operator can be added by pushing objects to OpPtrVector

Examples
build_large_problem.cpp, child_and_parent.cpp, eigen_elastic.cpp, elasticity.cpp, elasticity_mixed_formulation.cpp, field_evaluator.cpp, forces_and_sources_testing_users_base.cpp, hello_world.cpp, lorentz_force.cpp, MagneticElement.hpp, mesh_smoothing.cpp, navier_stokes.cpp, operators_tests.cpp, photon_diffusion.cpp, plot_base.cpp, PoissonOperators.hpp, Remodeling.hpp, schur_test_diag_mat.cpp, simple_contact_thermal.cpp, simple_elasticity.cpp, test_cache_on_entities.cpp, testing_jacobian_of_hook_element.cpp, and testing_jacobian_of_hook_scaled_with_density_element.cpp.

Definition at line 26 of file VolumeElementForcesAndSourcesCore.hpp.

Member Enumeration Documentation

◆ Switches

enum MoFEM::VolumeElementForcesAndSourcesCore::Switches

Definition at line 40 of file VolumeElementForcesAndSourcesCore.hpp.

40  {
41  };

Constructor & Destructor Documentation

◆ VolumeElementForcesAndSourcesCore() [1/2]

VolumeElementForcesAndSourcesCore::VolumeElementForcesAndSourcesCore ( Interface &  m_field)

Definition at line 9 of file VolumeElementForcesAndSourcesCore.cpp.

11  : ForcesAndSourcesCore(m_field), vOlume(elementMeasure),
12  meshPositionsFieldName("MESH_NODE_POSITIONS"), coords(24), jAc(3, 3),
13  invJac(3, 3), opSetInvJacH1(invJac),
14  opContravariantPiolaTransform(elementMeasure, jAc),
15  opCovariantPiolaTransform(invJac), opSetInvJacHdivAndHcurl(invJac),
16  tJac(&jAc(0, 0), &jAc(0, 1), &jAc(0, 2), &jAc(1, 0), &jAc(1, 1),
17  &jAc(1, 2), &jAc(2, 0), &jAc(2, 1), &jAc(2, 2)),
18  tInvJac(&invJac(0, 0), &invJac(0, 1), &invJac(0, 2), &invJac(1, 0),
19  &invJac(1, 1), &invJac(1, 2), &invJac(2, 0), &invJac(2, 1),
20  &invJac(2, 2)) {}

◆ VolumeElementForcesAndSourcesCore() [2/2]

VolumeElementForcesAndSourcesCore::VolumeElementForcesAndSourcesCore ( Interface &  m_field,
const EntityType  type 
)

Definition at line 22 of file VolumeElementForcesAndSourcesCore.cpp.

24  : VolumeElementForcesAndSourcesCore(m_field) {}

Member Function Documentation

◆ calculateCoordinatesAtGaussPts()

MoFEMErrorCode VolumeElementForcesAndSourcesCore::calculateCoordinatesAtGaussPts ( )
protectedvirtual

Calculate coordinate at integration points.

Returns
Error code

Definition at line 257 of file VolumeElementForcesAndSourcesCore.cpp.

257  {
258  MoFEMFunctionBegin;
259  // Get coords at Gauss points
260  FTensor::Index<'i', 3> i;
261 
262  auto &shape_functions = dataH1.dataOnEntities[MBVERTEX][0].getN(NOBASE);
263  double *shape_functions_ptr = &*shape_functions.data().begin();
264  const size_t nb_base_functions = shape_functions.size2();
265  const size_t nb_gauss_pts = gaussPts.size2();
266  coordsAtGaussPts.resize(nb_gauss_pts, 3, false);
267  coordsAtGaussPts.clear();
268  FTensor::Tensor1<FTensor::PackPtr<double *, 3>, 3> t_coords_at_gauss_ptr(
269  &coordsAtGaussPts(0, 0), &coordsAtGaussPts(0, 1),
270  &coordsAtGaussPts(0, 2));
271  FTensor::Tensor0<FTensor::PackPtr<double *, 1>> t_shape_functions(
272  shape_functions_ptr);
273  for (unsigned int gg = 0; gg != nb_gauss_pts; ++gg) {
274  FTensor::Tensor1<FTensor::PackPtr<double *, 3>, 3> t_coords(
275  &coords[0], &coords[1], &coords[2]);
276  for (int bb = 0; bb != nb_base_functions; ++bb) {
277  t_coords_at_gauss_ptr(i) += t_coords(i) * t_shape_functions;
278  ++t_coords;
279  ++t_shape_functions;
280  };
281  ++t_coords_at_gauss_ptr;
282  }
283  MoFEMFunctionReturn(0);
284 }

◆ calculateVolumeAndJacobian()

MoFEMErrorCode VolumeElementForcesAndSourcesCore::calculateVolumeAndJacobian ( )
protectedvirtual

Calculate element volume and Jacobian.

Note that at that point is assumed that geometry is exclusively defined by corner nodes.

Returns
Error code

Definition at line 200 of file VolumeElementForcesAndSourcesCore.cpp.

200  {
201  MoFEMFunctionBegin;
202  const auto ent = numeredEntFiniteElementPtr->getEnt();
203  const auto type = numeredEntFiniteElementPtr->getEntType();
204  CHKERR mField.get_moab().get_connectivity(ent, conn, num_nodes, true);
205  coords.resize(3 * num_nodes, false);
206  CHKERR mField.get_moab().get_coords(conn, num_nodes, &*coords.data().begin());
207 
208  auto get_tet_t_diff_n = [&]() {
209  return FTensor::Tensor1<FTensor::PackPtr<const double *, 3>, 3>(
210  &Tools::diffShapeFunMBTET[0], &Tools::diffShapeFunMBTET[1],
211  &Tools::diffShapeFunMBTET[2]);
212  };
213 
214  auto get_hex_t_diff_n = [&]() {
215  return FTensor::Tensor1<FTensor::PackPtr<const double *, 3>, 3>(
216  &Tools::diffShapeFunMBHEXAtCenter[0],
217  &Tools::diffShapeFunMBHEXAtCenter[1],
218  &Tools::diffShapeFunMBHEXAtCenter[2]);
219  };
220 
221  auto get_t_diff_n = [&]() {
222  if (type == MBTET)
223  return get_tet_t_diff_n();
224  return get_hex_t_diff_n();
225  };
226 
227  auto t_diff_n = get_t_diff_n();
228 
229  FTensor::Tensor1<FTensor::PackPtr<double *, 3>, 3> t_coords(
230  &coords[0], &coords[1], &coords[2]);
231  FTensor::Index<'i', 3> i;
232  FTensor::Index<'j', 3> j;
233  jAc.clear();
234 
235  for (size_t n = 0; n != num_nodes; ++n) {
236  tJac(i, j) += t_coords(i) * t_diff_n(j);
237  ++t_coords;
238  ++t_diff_n;
239  }
240  CHKERR determinantTensor3by3(tJac, vOlume);
241  CHKERR invertTensor3by3(tJac, vOlume, tInvJac);
242 
243  if (type == MBTET)
244  vOlume *= G_TET_W1[0] / 6.;
245 
246 #ifndef NDEBUG
247  if (vOlume <= std::numeric_limits<double>::epsilon() || vOlume != vOlume) {
248  MOFEM_LOG("SELF", Sev::warning) << "Volume is zero " << vOlume;
249  MOFEM_LOG("SELF", Sev::warning) << "Coords " << coords << endl;
250  }
251 #endif
252 
253  MoFEMFunctionReturn(0);
254 }

◆ getSpaceBaseAndOrderOnElement()

MoFEMErrorCode VolumeElementForcesAndSourcesCore::getSpaceBaseAndOrderOnElement ( )
protectedvirtual

Determine approximation space and order of base functions.

Returns
Error code

Definition at line 287 of file VolumeElementForcesAndSourcesCore.cpp.

287  {
288  MoFEMFunctionBegin;
289 
290  CHKERR getSpacesAndBaseOnEntities(dataH1);
291  CHKERR getFaceNodes(dataH1);
292 
293  auto type = numeredEntFiniteElementPtr->getEntType();
294  auto dim_type = CN::Dimension(type);
295 
296  auto get_data_on_ents = [&](auto lower_dim, auto space) {
297  MoFEMFunctionBeginHot;
298  auto data = dataOnElement[space];
299  data->facesNodes = dataH1.facesNodes;
300  data->facesNodesOrder = dataH1.facesNodesOrder;
301  for (auto dd = dim_type; dd >= lower_dim; --dd) {
302  int nb_ents = moab::CN::NumSubEntities(type, dd);
303  for (int ii = 0; ii != nb_ents; ++ii) {
304  auto sub_ent_type = moab::CN::SubEntityType(type, dd, ii);
305  if ((dataH1.spacesOnEntities[sub_ent_type]).test(space)) {
306  auto &data_on_ent = data->dataOnEntities[sub_ent_type];
307  CHKERR getEntitySense(sub_ent_type, data_on_ent);
308  CHKERR getEntityDataOrder(sub_ent_type, space, data_on_ent);
309  data->spacesOnEntities[sub_ent_type].set(space);
310  }
311  }
312  }
313  MoFEMFunctionReturnHot(0);
314  };
315 
316  CHKERR get_data_on_ents(1, H1); // H1
317  CHKERR get_data_on_ents(1, HCURL); // Hcurl
318  CHKERR get_data_on_ents(2, HDIV); // Hdiv
319  CHKERR get_data_on_ents(3, L2); // L2
320 
321  MoFEMFunctionReturn(0);
322 }

◆ operator()()

MoFEMErrorCode VolumeElementForcesAndSourcesCore::operator() ( )
virtual

function is run for every finite element

It is used to calculate element local matrices and assembly. It can be used for post-processing.

Reimplemented from MoFEM::ForcesAndSourcesCore.

Reimplemented in MoFEM::VolumeElementForcesAndSourcesCoreOnSide.

Definition at line 418 of file VolumeElementForcesAndSourcesCore.cpp.

418  {
419  MoFEMFunctionBegin;
420 
421  const auto type = numeredEntFiniteElementPtr->getEntType();
422  if (type != lastEvaluatedElementEntityType) {
423  switch (type) {
424  case MBTET:
425  getElementPolynomialBase() =
426  boost::shared_ptr<BaseFunction>(new TetPolynomialBase(this));
427  break;
428  case MBHEX:
429  getElementPolynomialBase() =
430  boost::shared_ptr<BaseFunction>(new HexPolynomialBase());
431  break;
432  default:
433  MoFEMFunctionReturnHot(0);
434  }
435  CHKERR createDataOnElement(type);
436  lastEvaluatedElementEntityType = type;
437  }
438 
439  CHKERR calculateVolumeAndJacobian();
440  CHKERR getSpaceBaseAndOrderOnElement();
441  CHKERR setIntegrationPts();
442  if (gaussPts.size2() == 0)
443  MoFEMFunctionReturnHot(0);
444  CHKERR calculateCoordinatesAtGaussPts();
445  CHKERR calHierarchicalBaseFunctionsOnElement();
446  CHKERR calBernsteinBezierBaseFunctionsOnElement();
447 
448  CHKERR transformBaseFunctions();
449 
450  // Iterate over operators
451  CHKERR loopOverOperators();
452 
453  MoFEMFunctionReturn(0);
454 }

◆ setIntegrationPts()

MoFEMErrorCode VolumeElementForcesAndSourcesCore::setIntegrationPts ( )
protectedvirtual

Set integration points.

Returns
Error code

Definition at line 26 of file VolumeElementForcesAndSourcesCore.cpp.

26  {
27  MoFEMFunctionBegin;
28 
29  int order_data = getMaxDataOrder();
30  int order_row = getMaxRowOrder();
31  int order_col = getMaxColOrder();
32  const auto type = numeredEntFiniteElementPtr->getEntType();
33 
34  auto get_rule_by_type = [&]() {
35  switch (type) {
36  case MBHEX:
37  return getRule(order_row + 1, order_col + 1, order_data + 1);
38  default:
39  return getRule(order_row, order_col, order_data);
40  }
41  };
42 
43  const int rule = get_rule_by_type();
44 
45  auto calc_base_for_tet = [&]() {
46  MoFEMFunctionBegin;
47  const size_t nb_gauss_pts = gaussPts.size2();
48  auto &base = dataH1.dataOnEntities[MBVERTEX][0].getN(NOBASE);
49  auto &diff_base = dataH1.dataOnEntities[MBVERTEX][0].getDiffN(NOBASE);
50  base.resize(nb_gauss_pts, 4, false);
51  diff_base.resize(nb_gauss_pts, 12, false);
52  CHKERR Tools::shapeFunMBTET(&*base.data().begin(), &gaussPts(0, 0),
53  &gaussPts(1, 0), &gaussPts(2, 0), nb_gauss_pts);
54  double *diff_shape_ptr = &*diff_base.data().begin();
55  for (int gg = 0; gg != nb_gauss_pts; ++gg) {
56  for (int nn = 0; nn != 4; ++nn) {
57  for (int dd = 0; dd != 3; ++dd, ++diff_shape_ptr) {
58  *diff_shape_ptr = Tools::diffShapeFunMBTET[3 * nn + dd];
59  }
60  }
61  }
62  MoFEMFunctionReturn(0);
63  };
64 
65  auto calc_base_for_hex = [&]() {
66  MoFEMFunctionBegin;
67  const size_t nb_gauss_pts = gaussPts.size2();
68  auto &base = dataH1.dataOnEntities[MBVERTEX][0].getN(NOBASE);
69  auto &diff_base = dataH1.dataOnEntities[MBVERTEX][0].getDiffN(NOBASE);
70  base.resize(nb_gauss_pts, 8, false);
71  diff_base.resize(nb_gauss_pts, 24, false);
72  for (int gg = 0; gg != nb_gauss_pts; ++gg) {
73  const double ksi = gaussPts(0, gg);
74  const double zeta = gaussPts(1, gg);
75  const double eta = gaussPts(2, gg);
76  base(gg, 0) = N_MBHEX0(ksi, zeta, eta);
77  base(gg, 1) = N_MBHEX1(ksi, zeta, eta);
78  base(gg, 2) = N_MBHEX2(ksi, zeta, eta);
79  base(gg, 3) = N_MBHEX3(ksi, zeta, eta);
80  base(gg, 4) = N_MBHEX4(ksi, zeta, eta);
81  base(gg, 5) = N_MBHEX5(ksi, zeta, eta);
82  base(gg, 6) = N_MBHEX6(ksi, zeta, eta);
83  base(gg, 7) = N_MBHEX7(ksi, zeta, eta);
84  diff_base(gg, 0 * 3 + 0) = diffN_MBHEX0x(zeta, eta);
85  diff_base(gg, 1 * 3 + 0) = diffN_MBHEX1x(zeta, eta);
86  diff_base(gg, 2 * 3 + 0) = diffN_MBHEX2x(zeta, eta);
87  diff_base(gg, 3 * 3 + 0) = diffN_MBHEX3x(zeta, eta);
88  diff_base(gg, 4 * 3 + 0) = diffN_MBHEX4x(zeta, eta);
89  diff_base(gg, 5 * 3 + 0) = diffN_MBHEX5x(zeta, eta);
90  diff_base(gg, 6 * 3 + 0) = diffN_MBHEX6x(zeta, eta);
91  diff_base(gg, 7 * 3 + 0) = diffN_MBHEX7x(zeta, eta);
92  diff_base(gg, 0 * 3 + 1) = diffN_MBHEX0y(ksi, eta);
93  diff_base(gg, 1 * 3 + 1) = diffN_MBHEX1y(ksi, eta);
94  diff_base(gg, 2 * 3 + 1) = diffN_MBHEX2y(ksi, eta);
95  diff_base(gg, 3 * 3 + 1) = diffN_MBHEX3y(ksi, eta);
96  diff_base(gg, 4 * 3 + 1) = diffN_MBHEX4y(ksi, eta);
97  diff_base(gg, 5 * 3 + 1) = diffN_MBHEX5y(ksi, eta);
98  diff_base(gg, 6 * 3 + 1) = diffN_MBHEX6y(ksi, eta);
99  diff_base(gg, 7 * 3 + 1) = diffN_MBHEX7y(ksi, eta);
100  diff_base(gg, 0 * 3 + 2) = diffN_MBHEX0z(ksi, zeta);
101  diff_base(gg, 1 * 3 + 2) = diffN_MBHEX1z(ksi, zeta);
102  diff_base(gg, 2 * 3 + 2) = diffN_MBHEX2z(ksi, zeta);
103  diff_base(gg, 3 * 3 + 2) = diffN_MBHEX3z(ksi, zeta);
104  diff_base(gg, 4 * 3 + 2) = diffN_MBHEX4z(ksi, zeta);
105  diff_base(gg, 5 * 3 + 2) = diffN_MBHEX5z(ksi, zeta);
106  diff_base(gg, 6 * 3 + 2) = diffN_MBHEX6z(ksi, zeta);
107  diff_base(gg, 7 * 3 + 2) = diffN_MBHEX7z(ksi, zeta);
108  }
109  MoFEMFunctionReturn(0);
110  };
111 
112  auto set_integration_pts_for_hex = [&]() {
113  MoFEMFunctionBegin;
114  CHKERR Tools::outerProductOfEdgeIntegrationPtsForHex(gaussPts, rule, rule,
115  rule);
116  MoFEMFunctionReturn(0);
117  };
118 
119  auto set_integration_pts_for_tet = [&]() {
120  MoFEMFunctionBegin;
121  if (rule < QUAD_3D_TABLE_SIZE) {
122  if (QUAD_3D_TABLE[rule]->dim != 3) {
123  SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY, "wrong dimension");
124  }
125  if (QUAD_3D_TABLE[rule]->order < rule) {
126  SETERRQ2(mField.get_comm(), MOFEM_DATA_INCONSISTENCY,
127  "wrong order %d != %d", QUAD_3D_TABLE[rule]->order, rule);
128  }
129  size_t nb_gauss_pts = QUAD_3D_TABLE[rule]->npoints;
130  gaussPts.resize(4, nb_gauss_pts, false);
131  cblas_dcopy(nb_gauss_pts, &QUAD_3D_TABLE[rule]->points[1], 4,
132  &gaussPts(0, 0), 1);
133  cblas_dcopy(nb_gauss_pts, &QUAD_3D_TABLE[rule]->points[2], 4,
134  &gaussPts(1, 0), 1);
135  cblas_dcopy(nb_gauss_pts, &QUAD_3D_TABLE[rule]->points[3], 4,
136  &gaussPts(2, 0), 1);
137  cblas_dcopy(nb_gauss_pts, QUAD_3D_TABLE[rule]->weights, 1,
138  &gaussPts(3, 0), 1);
139 
140  // CHKERR calc_base_for_tet();
141 
142  auto &base = dataH1.dataOnEntities[MBVERTEX][0].getN(NOBASE);
143  auto &diff_base = dataH1.dataOnEntities[MBVERTEX][0].getDiffN(NOBASE);
144  base.resize(nb_gauss_pts, 4, false);
145  diff_base.resize(nb_gauss_pts, 12, false);
146  double *shape_ptr = &*base.data().begin();
147  cblas_dcopy(4 * nb_gauss_pts, QUAD_3D_TABLE[rule]->points, 1, shape_ptr,
148  1);
149  double *diff_shape_ptr = &*diff_base.data().begin();
150  for (int gg = 0; gg != nb_gauss_pts; ++gg) {
151  for (int nn = 0; nn != 4; ++nn) {
152  for (int dd = 0; dd != 3; ++dd, ++diff_shape_ptr) {
153  *diff_shape_ptr = Tools::diffShapeFunMBTET[3 * nn + dd];
154  }
155  }
156  }
157 
158  } else {
159  SETERRQ2(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
160  "rule > quadrature order %d < %d", rule, QUAD_3D_TABLE_SIZE);
161  }
162  MoFEMFunctionReturn(0);
163  };
164 
165  if (rule >= 0) {
166  switch (type) {
167  case MBTET:
168  CHKERR set_integration_pts_for_tet();
169  break;
170  case MBHEX:
171  CHKERR set_integration_pts_for_hex();
172  CHKERR calc_base_for_hex();
173  break;
174  default:
175  SETERRQ1(PETSC_COMM_SELF, MOFEM_NOT_IMPLEMENTED,
176  "Element type not implemented: %d", type);
177  }
178  } else {
179  // If rule is negative, set user defined integration points
180  CHKERR setGaussPts(order_row, order_col, order_data);
181  const size_t nb_gauss_pts = gaussPts.size2();
182  if (nb_gauss_pts) {
183  switch (type) {
184  case MBTET: {
185  CHKERR calc_base_for_tet();
186  } break;
187  case MBHEX:
188  CHKERR calc_base_for_hex();
189  break;
190  default:
191  SETERRQ1(PETSC_COMM_SELF, MOFEM_NOT_IMPLEMENTED,
192  "Element type not implemented: %d", type);
193  }
194  }
195  }
196 
197  MoFEMFunctionReturn(0);
198 }

◆ transformBaseFunctions()

MoFEMErrorCode VolumeElementForcesAndSourcesCore::transformBaseFunctions ( )
protectedvirtual

Transform base functions based on geometric element Jacobian.

This function apply transformation to base functions and its derivatives. For example when base functions for H-div are present the Piola-Transformation is applied to base functions and their derivatives.

Returns
Error code

Definition at line 324 of file VolumeElementForcesAndSourcesCore.cpp.

324  {
325  MoFEMFunctionBegin;
326 
327  if (numeredEntFiniteElementPtr->getEntType() == MBTET) {
328  // OK that code is not nice.
329  MatrixDouble new_diff_n;
330  for (int b = AINSWORTH_LEGENDRE_BASE; b != LASTBASE; b++) {
331  FTensor::Index<'i', 3> i;
332  FieldApproximationBase base = static_cast<FieldApproximationBase>(b);
333  EntitiesFieldData::EntData &data = dataH1.dataOnEntities[MBVERTEX][0];
334  if ((data.getDiffN(base).size1() == 4) &&
335  (data.getDiffN(base).size2() == 3)) {
336  const size_t nb_gauss_pts = gaussPts.size2();
337  const size_t nb_base_functions = 4;
338  new_diff_n.resize(nb_gauss_pts, 3 * nb_base_functions, false);
339  double *new_diff_n_ptr = &*new_diff_n.data().begin();
340  FTensor::Tensor1<FTensor::PackPtr<double *, 3>, 3> t_new_diff_n(
341  new_diff_n_ptr, &new_diff_n_ptr[1], &new_diff_n_ptr[2]);
342  double *t_diff_n_ptr = &*data.getDiffN(base).data().begin();
343  for (unsigned int gg = 0; gg != nb_gauss_pts; gg++) {
344  FTensor::Tensor1<FTensor::PackPtr<double *, 3>, 3> t_diff_n(
345  t_diff_n_ptr, &t_diff_n_ptr[1], &t_diff_n_ptr[2]);
346  for (unsigned int bb = 0; bb != nb_base_functions; bb++) {
347  t_new_diff_n(i) = t_diff_n(i);
348  ++t_new_diff_n;
349  ++t_diff_n;
350  }
351  }
352  data.getDiffN(base).resize(new_diff_n.size1(), new_diff_n.size2(),
353  false);
354  data.getDiffN(base).swap(new_diff_n);
355  }
356  }
357  }
358 
359  if (dataH1.spacesOnEntities[MBVERTEX].test(H1))
360  CHKERR opSetInvJacH1.opRhs(dataH1);
361 
362  std::array<std::bitset<LASTSPACE>, 4> spaces_by_dim{
363 
364  std::bitset<LASTSPACE>(0), //
365  std::bitset<LASTSPACE>(0), //
366  std::bitset<LASTSPACE>(0), //
367  std::bitset<LASTSPACE>(0)
368 
369  };
370  for (auto type = MBEDGE; type != MBENTITYSET; ++type) {
371  spaces_by_dim[CN::Dimension(type)] |= dataH1.spacesOnEntities[type];
372  }
373 
374  if (
375 
376  spaces_by_dim[1].test(HCURL) || //
377  spaces_by_dim[2].test(HCURL) || //
378  spaces_by_dim[3].test(HCURL)
379 
380  ) {
381  CHKERR opCovariantPiolaTransform.opRhs(dataHcurl);
382  CHKERR opSetInvJacHdivAndHcurl.opRhs(dataHcurl);
383  }
384 
385  if (spaces_by_dim[2].test(HDIV) || spaces_by_dim[3].test(HDIV)) {
386  CHKERR opContravariantPiolaTransform.opRhs(dataHdiv);
387  // Fix for tetrahedrons
388  if (numeredEntFiniteElementPtr->getEntType() == MBTET) {
389  for (int b = AINSWORTH_LEGENDRE_BASE; b != LASTBASE; b++) {
390  FieldApproximationBase base = static_cast<FieldApproximationBase>(b);
391  for (auto t : {MBTRI, MBTET}) {
392  for (auto &d : dataHdiv.dataOnEntities[t]) {
393  d.getN(base) /= 6;
394  d.getDiffN(base) /= 6;
395  }
396  }
397  }
398  }
399  CHKERR opSetInvJacHdivAndHcurl.opRhs(dataHdiv);
400  }
401 
402  if (spaces_by_dim[3].test(L2)) {
403  CHKERR opSetInvJacH1.opRhs(dataL2);
404  }
405 
406  MoFEMFunctionReturn(0);
407 }

Friends And Related Function Documentation

◆ UserDataOperator

friend class UserDataOperator
friend
Examples
build_large_problem.cpp, continuity_check_on_contact_prism_side_ele.cpp, continuity_check_on_skeleton_3d.cpp, elasticity.cpp, field_evaluator.cpp, hcurl_curl_operator.cpp, hdiv_divergence_operator.cpp, lorentz_force.cpp, NavierStokesElement.hpp, PoissonOperators.hpp, Remodeling.hpp, simple_interface.cpp, test_cache_on_entities.cpp, and UnsaturatedFlow.hpp.

Definition at line 106 of file VolumeElementForcesAndSourcesCore.hpp.

Member Data Documentation

◆ conn

const EntityHandle* MoFEM::VolumeElementForcesAndSourcesCore::conn
protected

Definition at line 102 of file VolumeElementForcesAndSourcesCore.hpp.

◆ coords

VectorDouble MoFEM::VolumeElementForcesAndSourcesCore::coords
protected

Definition at line 90 of file VolumeElementForcesAndSourcesCore.hpp.

◆ invJac

MatrixDouble3by3 MoFEM::VolumeElementForcesAndSourcesCore::invJac
protected

Definition at line 92 of file VolumeElementForcesAndSourcesCore.hpp.

◆ jAc

MatrixDouble3by3 MoFEM::VolumeElementForcesAndSourcesCore::jAc
protected

Definition at line 91 of file VolumeElementForcesAndSourcesCore.hpp.

◆ meshPositionsFieldName

std::string MoFEM::VolumeElementForcesAndSourcesCore::meshPositionsFieldName
Deprecated:
DO NOT USE!

Definition at line 33 of file VolumeElementForcesAndSourcesCore.hpp.

◆ num_nodes

int MoFEM::VolumeElementForcesAndSourcesCore::num_nodes
protected

Definition at line 101 of file VolumeElementForcesAndSourcesCore.hpp.

◆ opContravariantPiolaTransform

OpSetContravariantPiolaTransform MoFEM::VolumeElementForcesAndSourcesCore::opContravariantPiolaTransform
protected

Definition at line 95 of file VolumeElementForcesAndSourcesCore.hpp.

◆ opCovariantPiolaTransform

OpSetCovariantPiolaTransform MoFEM::VolumeElementForcesAndSourcesCore::opCovariantPiolaTransform
protected

Definition at line 96 of file VolumeElementForcesAndSourcesCore.hpp.

◆ opSetInvJacH1

OpSetInvJacH1 MoFEM::VolumeElementForcesAndSourcesCore::opSetInvJacH1
protected

Definition at line 94 of file VolumeElementForcesAndSourcesCore.hpp.

◆ opSetInvJacHdivAndHcurl

OpSetInvJacHdivAndHcurl MoFEM::VolumeElementForcesAndSourcesCore::opSetInvJacHdivAndHcurl
protected

Definition at line 97 of file VolumeElementForcesAndSourcesCore.hpp.

◆ tInvJac

FTensor::Tensor2<double *, 3, 3> MoFEM::VolumeElementForcesAndSourcesCore::tInvJac
protected

Definition at line 104 of file VolumeElementForcesAndSourcesCore.hpp.

◆ tJac

FTensor::Tensor2<double *, 3, 3> MoFEM::VolumeElementForcesAndSourcesCore::tJac
protected

Definition at line 103 of file VolumeElementForcesAndSourcesCore.hpp.

◆ vOlume

double& MoFEM::VolumeElementForcesAndSourcesCore::vOlume
protected

Definition at line 99 of file VolumeElementForcesAndSourcesCore.hpp.

The documentation for this struct was generated from the following files:
MoFEMFunctionReturnHot
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:460
MoFEM::VolumeElementForcesAndSourcesCore::setIntegrationPts
virtual MoFEMErrorCode setIntegrationPts()
Set integration points.
Definition: VolumeElementForcesAndSourcesCore.cpp:26
diffN_MBHEX0y
#define diffN_MBHEX0y(x, z)
Definition: fem_tools.h:87
MoFEM::EntitiesFieldData::facesNodesOrder
MatrixInt facesNodesOrder
order of face nodes on element
Definition: EntitiesFieldData.hpp:46
H1
@ H1
continuous field
Definition: definitions.h:85
MoFEM::VolumeElementForcesAndSourcesCore::meshPositionsFieldName
std::string meshPositionsFieldName
Definition: VolumeElementForcesAndSourcesCore.hpp:33
MoFEM::ForcesAndSourcesCore::calBernsteinBezierBaseFunctionsOnElement
MoFEMErrorCode calBernsteinBezierBaseFunctionsOnElement()
Calculate Bernstein-Bezier base.
Definition: ForcesAndSourcesCore.cpp:1132
MoFEM::DataOperator::opRhs
virtual MoFEMErrorCode opRhs(EntitiesFieldData &data, const bool error_if_no_base=false)
Definition: DataOperators.cpp:140
LASTBASE
@ LASTBASE
Definition: definitions.h:69
MoFEM::ForcesAndSourcesCore::getMaxRowOrder
int getMaxRowOrder() const
Get max order of approximation for field in rows.
Definition: ForcesAndSourcesCore.cpp:131
FTensor::Tensor1
Definition: Tensor1_value.hpp:8
diffN_MBHEX1z
#define diffN_MBHEX1z(x, y)
Definition: fem_tools.h:96
N_MBHEX5
#define N_MBHEX5(x, y, z)
Definition: fem_tools.h:76
MoFEM::ForcesAndSourcesCore::getFaceNodes
MoFEMErrorCode getFaceNodes(EntitiesFieldData &data) const
Get nodes on faces.
Definition: ForcesAndSourcesCore.cpp:921
MoFEM::ForcesAndSourcesCore::lastEvaluatedElementEntityType
EntityType lastEvaluatedElementEntityType
Last evaluated type of element entity.
Definition: ForcesAndSourcesCore.hpp:489
MoFEM::CoreInterface::get_comm
virtual MPI_Comm & get_comm() const =0
NOBASE
@ NOBASE
Definition: definitions.h:59
diffN_MBHEX3x
#define diffN_MBHEX3x(y, z)
Definition: fem_tools.h:82
L2
@ L2
field with C-1 continuity
Definition: definitions.h:88
N_MBHEX0
#define N_MBHEX0(x, y, z)
Definition: fem_tools.h:71
MoFEM::VolumeElementForcesAndSourcesCore::opCovariantPiolaTransform
OpSetCovariantPiolaTransform opCovariantPiolaTransform
Definition: VolumeElementForcesAndSourcesCore.hpp:96
MoFEM::Types::MatrixDouble
UBlasMatrix< double > MatrixDouble
Definition: Types.hpp:77
MoFEM::ForcesAndSourcesCore::setGaussPts
virtual MoFEMErrorCode setGaussPts(int order_row, int order_col, int order_data)
set user specific integration rule
Definition: ForcesAndSourcesCore.cpp:1979
MoFEM::ForcesAndSourcesCore::getMaxDataOrder
int getMaxDataOrder() const
Get max order of approximation for data fields.
Definition: ForcesAndSourcesCore.cpp:120
MoFEM::Tools::diffShapeFunMBHEXAtCenter
static constexpr std::array< double, 24 > diffShapeFunMBHEXAtCenter
Definition: Tools.hpp:218
QUAD_::order
int order
Definition: quad.h:28
MoFEM::ForcesAndSourcesCore::dataHdiv
EntitiesFieldData & dataHdiv
Definition: ForcesAndSourcesCore.hpp:473
MoFEM::VolumeElementForcesAndSourcesCore::opSetInvJacHdivAndHcurl
OpSetInvJacHdivAndHcurl opSetInvJacHdivAndHcurl
Definition: VolumeElementForcesAndSourcesCore.hpp:97
MoFEM::Tools::diffShapeFunMBTET
static constexpr std::array< double, 12 > diffShapeFunMBTET
Definition: Tools.hpp:271
MoFEM::VolumeElementForcesAndSourcesCore::calculateCoordinatesAtGaussPts
virtual MoFEMErrorCode calculateCoordinatesAtGaussPts()
Calculate coordinate at integration points.
Definition: VolumeElementForcesAndSourcesCore.cpp:257
MoFEM::ForcesAndSourcesCore::getEntityDataOrder
MoFEMErrorCode getEntityDataOrder(const EntityType type, const FieldSpace space, boost::ptr_vector< EntitiesFieldData::EntData > &data) const
Get the entity data order.
Definition: ForcesAndSourcesCore.cpp:139
N_MBHEX7
#define N_MBHEX7(x, y, z)
Definition: fem_tools.h:78
MoFEM::ForcesAndSourcesCore::getElementPolynomialBase
auto & getElementPolynomialBase()
Get the Entity Polynomial Base object.
Definition: ForcesAndSourcesCore.hpp:90
MoFEM::ForcesAndSourcesCore::getMaxColOrder
int getMaxColOrder() const
Get max order of approximation for field in columns.
Definition: ForcesAndSourcesCore.cpp:135
MoFEM::Tools::outerProductOfEdgeIntegrationPtsForHex
static MoFEMErrorCode outerProductOfEdgeIntegrationPtsForHex(MatrixDouble &pts, const int edge0, const int edge1, const int edge2)
Definition: Tools.cpp:659
MoFEM::ForcesAndSourcesCore::calHierarchicalBaseFunctionsOnElement
MoFEMErrorCode calHierarchicalBaseFunctionsOnElement()
Calculate base functions.
Definition: ForcesAndSourcesCore.cpp:1112
diffN_MBHEX5x
#define diffN_MBHEX5x(y, z)
Definition: fem_tools.h:84
G_TET_W1
static const double G_TET_W1[]
Definition: fem_tools.h:1115
MoFEM::EntitiesFieldData::spacesOnEntities
std::array< std::bitset< LASTSPACE >, MBMAXTYPE > spacesOnEntities
spaces on entity types
Definition: EntitiesFieldData.hpp:49
diffN_MBHEX2y
#define diffN_MBHEX2y(x, z)
Definition: fem_tools.h:89
MoFEM::EntitiesFieldData::facesNodes
MatrixInt facesNodes
nodes on finite element faces
Definition: EntitiesFieldData.hpp:45
zeta
double zeta
Viscous hardening.
Definition: plastic.cpp:130
order
constexpr int order
Definition: dg_projection.cpp:18
MoFEM::VolumeElementForcesAndSourcesCore::coords
VectorDouble coords
Definition: VolumeElementForcesAndSourcesCore.hpp:90
MoFEM::invertTensor3by3
MoFEMErrorCode invertTensor3by3(ublas::matrix< T, L, A > &jac_data, ublas::vector< T, A > &det_data, ublas::matrix< T, L, A > &inv_jac_data)
Calculate inverse of tensor rank 2 at integration points.
Definition: Templates.hpp:1588
diffN_MBHEX5y
#define diffN_MBHEX5y(x, z)
Definition: fem_tools.h:92
N_MBHEX3
#define N_MBHEX3(x, y, z)
Definition: fem_tools.h:74
MoFEM::ForcesAndSourcesCore::dataL2
EntitiesFieldData & dataL2
Definition: ForcesAndSourcesCore.hpp:474
MoFEM::ForcesAndSourcesCore::elementMeasure
double elementMeasure
Definition: ForcesAndSourcesCore.hpp:545
CHKERR
#define CHKERR
Inline error check.
Definition: definitions.h:548
MoFEM::VolumeElementForcesAndSourcesCore::num_nodes
int num_nodes
Definition: VolumeElementForcesAndSourcesCore.hpp:101
MoFEM::VolumeElementForcesAndSourcesCore::calculateVolumeAndJacobian
virtual MoFEMErrorCode calculateVolumeAndJacobian()
Calculate element volume and Jacobian.
Definition: VolumeElementForcesAndSourcesCore.cpp:200
MoFEM::CoreInterface::get_moab
virtual moab::Interface & get_moab()=0
diffN_MBHEX1x
#define diffN_MBHEX1x(y, z)
Definition: fem_tools.h:80
MoFEM::ForcesAndSourcesCore::coordsAtGaussPts
MatrixDouble coordsAtGaussPts
coordinated at gauss points
Definition: ForcesAndSourcesCore.hpp:544
diffN_MBHEX4z
#define diffN_MBHEX4z(x, y)
Definition: fem_tools.h:99
MoFEM::VolumeElementForcesAndSourcesCore::getSpaceBaseAndOrderOnElement
virtual MoFEMErrorCode getSpaceBaseAndOrderOnElement()
Determine approximation space and order of base functions.
Definition: VolumeElementForcesAndSourcesCore.cpp:287
diffN_MBHEX2x
#define diffN_MBHEX2x(y, z)
Definition: fem_tools.h:81
MoFEM::VolumeElementForcesAndSourcesCore::VolumeElementForcesAndSourcesCore
VolumeElementForcesAndSourcesCore(Interface &m_field)
Definition: VolumeElementForcesAndSourcesCore.cpp:9
convert.type
type
Definition: convert.py:64
MoFEM::ForcesAndSourcesCore::dataOnElement
const std::array< boost::shared_ptr< EntitiesFieldData >, LASTSPACE > dataOnElement
Entity data on element entity rows fields.
Definition: ForcesAndSourcesCore.hpp:461
MoFEM::VolumeElementForcesAndSourcesCore::conn
const EntityHandle * conn
Definition: VolumeElementForcesAndSourcesCore.hpp:102
MoFEM::ForcesAndSourcesCore::createDataOnElement
MoFEMErrorCode createDataOnElement(EntityType type)
Create a entity data on element object.
Definition: ForcesAndSourcesCore.cpp:1337
MoFEM::ForcesAndSourcesCore::ForcesAndSourcesCore
ForcesAndSourcesCore(Interface &m_field)
Definition: ForcesAndSourcesCore.cpp:40
diffN_MBHEX3z
#define diffN_MBHEX3z(x, y)
Definition: fem_tools.h:98
eta
double eta
Definition: free_surface.cpp:172
N_MBHEX1
#define N_MBHEX1(x, y, z)
Definition: fem_tools.h:72
diffN_MBHEX2z
#define diffN_MBHEX2z(x, y)
Definition: fem_tools.h:97
QUAD_::npoints
int npoints
Definition: quad.h:29
MoFEM::ForcesAndSourcesCore::getRule
virtual int getRule(int order_row, int order_col, int order_data)
another variant of getRule
Definition: ForcesAndSourcesCore.cpp:1973
diffN_MBHEX7x
#define diffN_MBHEX7x(y, z)
Definition: fem_tools.h:86
MoFEM::VolumeElementForcesAndSourcesCore::opSetInvJacH1
OpSetInvJacH1 opSetInvJacH1
Definition: VolumeElementForcesAndSourcesCore.hpp:94
MoFEM::VolumeElementForcesAndSourcesCore::tJac
FTensor::Tensor2< double *, 3, 3 > tJac
Definition: VolumeElementForcesAndSourcesCore.hpp:103
diffN_MBHEX7y
#define diffN_MBHEX7y(x, z)
Definition: fem_tools.h:94
diffN_MBHEX5z
#define diffN_MBHEX5z(x, y)
Definition: fem_tools.h:100
diffN_MBHEX3y
#define diffN_MBHEX3y(x, z)
Definition: fem_tools.h:90
t
constexpr double t
plate stiffness
Definition: plate.cpp:58
diffN_MBHEX1y
#define diffN_MBHEX1y(x, z)
Definition: fem_tools.h:88
i
FTensor::Index< 'i', SPACE_DIM > i
Definition: hcurl_divergence_operator_2d.cpp:27
QUAD_3D_TABLE
static QUAD *const QUAD_3D_TABLE[]
Definition: quad.h:187
MoFEM::ForcesAndSourcesCore::getSpacesAndBaseOnEntities
MoFEMErrorCode getSpacesAndBaseOnEntities(EntitiesFieldData &data) const
Get field approximation space and base on entities.
Definition: ForcesAndSourcesCore.cpp:990
EntData
EntitiesFieldData::EntData EntData
Definition: child_and_parent.cpp:37
FTensor::Index< 'i', 3 >
convert.n
n
Definition: convert.py:82
diffN_MBHEX4y
#define diffN_MBHEX4y(x, z)
Definition: fem_tools.h:91
diffN_MBHEX6x
#define diffN_MBHEX6x(y, z)
Definition: fem_tools.h:85
MoFEM::VolumeElementForcesAndSourcesCore::vOlume
double & vOlume
Definition: VolumeElementForcesAndSourcesCore.hpp:99
QUAD_3D_TABLE_SIZE
#define QUAD_3D_TABLE_SIZE
Definition: quad.h:186
MoFEM::ForcesAndSourcesCore::dataH1
EntitiesFieldData & dataH1
Definition: ForcesAndSourcesCore.hpp:471
MoFEM::determinantTensor3by3
static auto determinantTensor3by3(T &t)
Calculate the determinant of a 3x3 matrix or a tensor of rank 2.
Definition: Templates.hpp:1540
MoFEM::Tools::shapeFunMBTET
static MoFEMErrorCode shapeFunMBTET(double *shape, const double *ksi, const double *eta, const double *zeta, const double nb)
Calculate shape functions on tetrahedron.
Definition: Tools.hpp:747
diffN_MBHEX4x
#define diffN_MBHEX4x(y, z)
Definition: fem_tools.h:83
FTensor::dd
const Tensor2_symmetric_Expr< const ddTensor0< T, Dim, i, j >, typename promote< T, double >::V, Dim, i, j > dd(const Tensor0< T * > &a, const Index< i, Dim > index1, const Index< j, Dim > index2, const Tensor1< int, Dim > &d_ijk, const Tensor1< double, Dim > &d_xyz)
Definition: ddTensor0.hpp:33
MOFEM_LOG
#define MOFEM_LOG(channel, severity)
Log.
Definition: LogManager.hpp:308
diffN_MBHEX6y
#define diffN_MBHEX6y(x, z)
Definition: fem_tools.h:93
FTensor::Tensor0
Definition: Tensor0.hpp:16
MoFEM::VolumeElementForcesAndSourcesCore::invJac
MatrixDouble3by3 invJac
Definition: VolumeElementForcesAndSourcesCore.hpp:92
N_MBHEX2
#define N_MBHEX2(x, y, z)
Definition: fem_tools.h:73
MoFEM::VolumeElementForcesAndSourcesCore::jAc
MatrixDouble3by3 jAc
Definition: VolumeElementForcesAndSourcesCore.hpp:91
N_MBHEX4
#define N_MBHEX4(x, y, z)
Definition: fem_tools.h:75
j
FTensor::Index< 'j', 3 > j
Definition: matrix_function.cpp:19
MoFEM::ForcesAndSourcesCore::dataHcurl
EntitiesFieldData & dataHcurl
Definition: ForcesAndSourcesCore.hpp:472
AINSWORTH_LEGENDRE_BASE
@ AINSWORTH_LEGENDRE_BASE
Ainsworth Cole (Legendre) approx. base .
Definition: definitions.h:60
HCURL
@ HCURL
field with continuous tangents
Definition: definitions.h:86
MOFEM_DATA_INCONSISTENCY
@ MOFEM_DATA_INCONSISTENCY
Definition: definitions.h:31
MoFEM::ForcesAndSourcesCore::gaussPts
MatrixDouble gaussPts
Matrix of integration points.
Definition: ForcesAndSourcesCore.hpp:109
diffN_MBHEX0z
#define diffN_MBHEX0z(x, y)
Definition: fem_tools.h:95
MoFEM::VolumeElementForcesAndSourcesCore::opContravariantPiolaTransform
OpSetContravariantPiolaTransform opContravariantPiolaTransform
Definition: VolumeElementForcesAndSourcesCore.hpp:95
sdf_hertz_2d_axisymm_plane.d
float d
Definition: sdf_hertz_2d_axisymm_plane.py:4
FieldApproximationBase
FieldApproximationBase
approximation base
Definition: definitions.h:58
TetPolynomialBase
diffN_MBHEX6z
#define diffN_MBHEX6z(x, y)
Definition: fem_tools.h:101
MoFEM::EntitiesFieldData::dataOnEntities
std::array< boost::ptr_vector< EntData >, MBMAXTYPE > dataOnEntities
Definition: EntitiesFieldData.hpp:57
MoFEM::ForcesAndSourcesCore::loopOverOperators
MoFEMErrorCode loopOverOperators()
Iterate user data operators.
Definition: ForcesAndSourcesCore.cpp:1379
MoFEM::FEMethod::numeredEntFiniteElementPtr
boost::shared_ptr< const NumeredEntFiniteElement > numeredEntFiniteElementPtr
Definition: LoopMethods.hpp:387
MoFEMFunctionBeginHot
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:453
N_MBHEX6
#define N_MBHEX6(x, y, z)
Definition: fem_tools.h:77
MoFEM::VolumeElementForcesAndSourcesCore::tInvJac
FTensor::Tensor2< double *, 3, 3 > tInvJac
Definition: VolumeElementForcesAndSourcesCore.hpp:104
MoFEMFunctionReturn
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:429
HDIV
@ HDIV
field with continuous normal traction
Definition: definitions.h:87
MOFEM_NOT_IMPLEMENTED
@ MOFEM_NOT_IMPLEMENTED
Definition: definitions.h:32
diffN_MBHEX7z
#define diffN_MBHEX7z(x, y)
Definition: fem_tools.h:102
MoFEMFunctionBegin
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:359
diffN_MBHEX0x
#define diffN_MBHEX0x(y, z)
Definition: fem_tools.h:79
MoFEM::VolumeElementForcesAndSourcesCore::transformBaseFunctions
virtual MoFEMErrorCode transformBaseFunctions()
Transform base functions based on geometric element Jacobian.
Definition: VolumeElementForcesAndSourcesCore.cpp:324
MoFEM::ForcesAndSourcesCore::mField
Interface & mField
Definition: ForcesAndSourcesCore.hpp:24
MoFEM::ForcesAndSourcesCore::getEntitySense
MoFEMErrorCode getEntitySense(const EntityType type, boost::ptr_vector< EntitiesFieldData::EntData > &data) const
get sense (orientation) of entity
Definition: ForcesAndSourcesCore.cpp:84
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