v0.14.0
Public Member Functions | Protected Member Functions | Protected Attributes | List of all members
PoissonExample::OpKt Struct Reference

#include <tutorials/cor-2to5/src/PoissonOperators.hpp>

Inheritance diagram for PoissonExample::OpKt:
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Collaboration diagram for PoissonExample::OpKt:
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Public Member Functions

 OpKt (boost::function< double(const double)> a, boost::function< double(const double)> diff_a, boost::shared_ptr< VectorDouble > &field_vals, boost::shared_ptr< MatrixDouble > &grad_vals)
 
- Public Member Functions inherited from PoissonExample::OpK
 OpK (bool symm=true)
 
MoFEMErrorCode doWork (int row_side, int col_side, EntityType row_type, EntityType col_type, EntitiesFieldData::EntData &row_data, EntitiesFieldData::EntData &col_data)
 Do calculations for give operator. More...
 
- Public Member Functions inherited from MoFEM::VolumeElementForcesAndSourcesCore::UserDataOperator
int getNumNodes ()
 get element number of nodes More...
 
const EntityHandlegetConn ()
 get element connectivity More...
 
double getVolume () const
 element volume (linear geometry) More...
 
doublegetVolume ()
 element volume (linear geometry) More...
 
FTensor::Tensor2< double *, 3, 3 > & getJac ()
 get element Jacobian More...
 
FTensor::Tensor2< double *, 3, 3 > & getInvJac ()
 get element inverse Jacobian More...
 
VectorDoublegetCoords ()
 nodal coordinates More...
 
VolumeElementForcesAndSourcesCoregetVolumeFE () const
 return pointer to Generic Volume Finite Element object More...
 
- Public Member Functions inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
 UserDataOperator (const FieldSpace space, const char type=OPSPACE, const bool symm=true)
 
 UserDataOperator (const std::string field_name, const char type, const bool symm=true)
 
 UserDataOperator (const std::string row_field_name, const std::string col_field_name, const char type, const bool symm=true)
 
boost::shared_ptr< const NumeredEntFiniteElementgetNumeredEntFiniteElementPtr () const
 Return raw pointer to NumeredEntFiniteElement. More...
 
EntityHandle getFEEntityHandle () const
 Return finite element entity handle. More...
 
int getFEDim () const
 Get dimension of finite element. More...
 
EntityType getFEType () const
 Get dimension of finite element. More...
 
boost::weak_ptr< SideNumbergetSideNumberPtr (const int side_number, const EntityType type)
 Get the side number pointer. More...
 
EntityHandle getSideEntity (const int side_number, const EntityType type)
 Get the side entity. More...
 
int getNumberOfNodesOnElement () const
 Get the number of nodes on finite element. More...
 
MoFEMErrorCode getProblemRowIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 Get row indices. More...
 
MoFEMErrorCode getProblemColIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 Get col indices. More...
 
const FEMethodgetFEMethod () const
 Return raw pointer to Finite Element Method object. More...
 
int getOpType () const
 Get operator types. More...
 
void setOpType (const OpType type)
 Set operator type. More...
 
void addOpType (const OpType type)
 Add operator type. More...
 
int getNinTheLoop () const
 get number of finite element in the loop More...
 
int getLoopSize () const
 get size of elements in the loop More...
 
std::string getFEName () const
 Get name of the element. More...
 
ForcesAndSourcesCoregetPtrFE () const
 
ForcesAndSourcesCoregetSidePtrFE () const
 
ForcesAndSourcesCoregetRefinePtrFE () const
 
const PetscData::SwitchesgetDataCtx () const
 
const KspMethod::KSPContext getKSPCtx () const
 
const SnesMethod::SNESContext getSNESCtx () const
 
const TSMethod::TSContext getTSCtx () const
 
Vec getKSPf () const
 
Mat getKSPA () const
 
Mat getKSPB () const
 
Vec getSNESf () const
 
Vec getSNESx () const
 
Mat getSNESA () const
 
Mat getSNESB () const
 
Vec getTSu () const
 
Vec getTSu_t () const
 
Vec getTSu_tt () const
 
Vec getTSf () const
 
Mat getTSA () const
 
Mat getTSB () const
 
int getTSstep () const
 
double getTStime () const
 
double getTStimeStep () const
 
double getTSa () const
 
double getTSaa () const
 
MatrixDoublegetGaussPts ()
 matrix of integration (Gauss) points for Volume Element More...
 
auto getFTensor0IntegrationWeight ()
 Get integration weights. More...
 
MatrixDoublegetCoordsAtGaussPts ()
 Gauss points and weight, matrix (nb. of points x 3) More...
 
auto getFTensor1CoordsAtGaussPts ()
 Get coordinates at integration points assuming linear geometry. More...
 
double getMeasure () const
 get measure of element More...
 
doublegetMeasure ()
 get measure of element More...
 
MoFEMErrorCode loopSide (const string &fe_name, ForcesAndSourcesCore *side_fe, const size_t dim, const EntityHandle ent_for_side=0, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy, AdjCache *adj_cache=nullptr)
 User calls this function to loop over elements on the side of face. This function calls finite element with its operator to do calculations. More...
 
MoFEMErrorCode loopThis (const string &fe_name, ForcesAndSourcesCore *this_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User calls this function to loop over the same element using a different set of integration points. This function calls finite element with its operator to do calculations. More...
 
MoFEMErrorCode loopParent (const string &fe_name, ForcesAndSourcesCore *parent_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User calls this function to loop over parent elements. This function calls finite element with its operator to do calculations. More...
 
MoFEMErrorCode loopChildren (const string &fe_name, ForcesAndSourcesCore *child_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User calls this function to loop over parent elements. This function calls finite element with its operator to do calculations. More...
 
- Public Member Functions inherited from MoFEM::DataOperator
 DataOperator (const bool symm=true)
 
virtual ~DataOperator ()=default
 
virtual MoFEMErrorCode opLhs (EntitiesFieldData &row_data, EntitiesFieldData &col_data)
 
virtual MoFEMErrorCode doWork (int side, EntityType type, EntitiesFieldData::EntData &data)
 Operator for linear form, usually to calculate values on right hand side. More...
 
virtual MoFEMErrorCode opRhs (EntitiesFieldData &data, const bool error_if_no_base=false)
 
bool getSymm () const
 Get if operator uses symmetry of DOFs or not. More...
 
void setSymm ()
 set if operator is executed taking in account symmetry More...
 
void unSetSymm ()
 unset if operator is executed for non symmetric problem More...
 

Protected Member Functions

MoFEMErrorCode iNtegrate (EntitiesFieldData::EntData &row_data, EntitiesFieldData::EntData &col_data)
 Integrate grad-grad operator. More...
 
- Protected Member Functions inherited from PoissonExample::OpK
virtual MoFEMErrorCode aSsemble (EntitiesFieldData::EntData &row_data, EntitiesFieldData::EntData &col_data)
 Assemble local entity block matrix. More...
 
- Protected Member Functions inherited from MoFEM::VolumeElementForcesAndSourcesCore::UserDataOperator
MoFEMErrorCode setPtrFE (ForcesAndSourcesCore *ptr)
 

Protected Attributes

boost::function< double(const double)> A
 
boost::function< double(const double)> diffA
 
boost::shared_ptr< VectorDouble > fieldVals
 
boost::shared_ptr< MatrixDouble > gradVals
 
- Protected Attributes inherited from PoissonExample::OpK
int nbRows
 < error code More...
 
int nbCols
 number if dof on column More...
 
int nbIntegrationPts
 number of integration points More...
 
bool isDiag
 true if this block is on diagonal More...
 
FTensor::Index< 'i', 3 > i
 summit Index More...
 
MatrixDouble locMat
 local entity block matrix More...
 
- Protected Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
ForcesAndSourcesCoreptrFE
 

Additional Inherited Members

- Public Types inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
enum  OpType {
  OPROW = 1 << 0, OPCOL = 1 << 1, OPROWCOL = 1 << 2, OPSPACE = 1 << 3,
  OPLAST = 1 << 3
}
 Controls loop over entities on element. More...
 
using AdjCache = std::map< EntityHandle, std::vector< boost::weak_ptr< NumeredEntFiniteElement > >>
 
- Public Types inherited from MoFEM::DataOperator
using DoWorkLhsHookFunType = boost::function< MoFEMErrorCode(DataOperator *op_ptr, int row_side, int col_side, EntityType row_type, EntityType col_type, EntitiesFieldData::EntData &row_data, EntitiesFieldData::EntData &col_data)>
 
using DoWorkRhsHookFunType = boost::function< MoFEMErrorCode(DataOperator *op_ptr, int side, EntityType type, EntitiesFieldData::EntData &data)>
 
- Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
char opType
 
std::string rowFieldName
 
std::string colFieldName
 
FieldSpace sPace
 
- Public Attributes inherited from MoFEM::DataOperator
DoWorkLhsHookFunType doWorkLhsHook
 
DoWorkRhsHookFunType doWorkRhsHook
 
bool sYmm
 If true assume that matrix is symmetric structure. More...
 
std::array< bool, MBMAXTYPE > doEntities
 If true operator is executed for entity. More...
 
booldoVertices
 \deprectaed If false skip vertices More...
 
booldoEdges
 \deprectaed If false skip edges More...
 
booldoQuads
 \deprectaed More...
 
booldoTris
 \deprectaed More...
 
booldoTets
 \deprectaed More...
 
booldoPrisms
 \deprectaed More...
 
- Static Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
static const char *const OpTypeNames []
 

Detailed Description

Definition at line 588 of file PoissonOperators.hpp.

Constructor & Destructor Documentation

◆ OpKt()

PoissonExample::OpKt::OpKt ( boost::function< double(const double)>  a,
boost::function< double(const double)>  diff_a,
boost::shared_ptr< VectorDouble > &  field_vals,
boost::shared_ptr< MatrixDouble > &  grad_vals 
)
inline

Definition at line 590 of file PoissonOperators.hpp.

594  : OpK(false), A(a), diffA(diff_a), fieldVals(field_vals),
595  gradVals(grad_vals) {}

Member Function Documentation

◆ iNtegrate()

MoFEMErrorCode PoissonExample::OpKt::iNtegrate ( EntitiesFieldData::EntData row_data,
EntitiesFieldData::EntData col_data 
)
inlineprotectedvirtual

Integrate grad-grad operator.

Parameters
row_datarow data (consist base functions on row entity)
col_datacolumn data (consist base functions on column entity)
Returns
error code

Reimplemented from PoissonExample::OpK.

Definition at line 604 of file PoissonOperators.hpp.

605  {
607  // set size of local entity bock
608  locMat.resize(nbRows, nbCols, false);
609  // clear matrix
610  locMat.clear();
611  // get element volume
612  double vol = getVolume();
613  // get integration weights
614  auto t_w = getFTensor0IntegrationWeight();
615  // get solution at integration point
616  auto t_u = getFTensor0FromVec(*fieldVals);
617  // get solution at integration point
618  auto t_grad = getFTensor1FromMat<3>(*gradVals);
619  // get base function gradient on rows
620  auto t_row_grad = row_data.getFTensor1DiffN<3>();
621  // loop over integration points
622  for (int gg = 0; gg != nbIntegrationPts; gg++) {
623  // take into account Jacobian
624  const double alpha = t_w * vol;
625  const double beta = alpha * A(t_u);
627  t_gamma(i) = (alpha * diffA(t_u)) * t_grad(i);
628  // take fist element to local matrix
630  &*locMat.data().begin());
631  // loop over rows base functions
632  for (int rr = 0; rr != nbRows; rr++) {
633  // get column base function
634  auto t_col = col_data.getFTensor0N(gg, 0);
635  // get column base functions gradient at gauss point gg
636  auto t_col_grad = col_data.getFTensor1DiffN<3>(gg, 0);
637  // loop over columns
638  for (int cc = 0; cc != nbCols; cc++) {
639  // calculate element of local matrix
640  a += (t_row_grad(i) * beta) * t_col_grad(i) +
641  t_row_grad(i) * (t_gamma(i) * t_col);
642  ++t_col; // move to next base function
643  ++t_col_grad; // move to another gradient of base function on column
644  ++a; // move to another element of local matrix in column
645  }
646  ++t_row_grad; // move to another element of gradient of base function on
647  // row
648  }
649  ++t_w; // move to another integration weight
650  ++t_u; // move to next value at integration point
651  ++t_grad; // move to next gradient value
652  }
654  }

Member Data Documentation

◆ A

boost::function<double(const double)> PoissonExample::OpKt::A
protected

Definition at line 656 of file PoissonOperators.hpp.

◆ diffA

boost::function<double(const double)> PoissonExample::OpKt::diffA
protected

Definition at line 657 of file PoissonOperators.hpp.

◆ fieldVals

boost::shared_ptr<VectorDouble> PoissonExample::OpKt::fieldVals
protected

Definition at line 658 of file PoissonOperators.hpp.

◆ gradVals

boost::shared_ptr<MatrixDouble> PoissonExample::OpKt::gradVals
protected

Definition at line 659 of file PoissonOperators.hpp.


The documentation for this struct was generated from the following file:
FTensor::Tensor1< double, 3 >
PoissonExample::OpKt::fieldVals
boost::shared_ptr< VectorDouble > fieldVals
Definition: PoissonOperators.hpp:658
MoFEM::VolumeElementForcesAndSourcesCore::UserDataOperator::getVolume
double getVolume() const
element volume (linear geometry)
Definition: VolumeElementForcesAndSourcesCore.hpp:161
MoFEM::ForcesAndSourcesCore::UserDataOperator::getFTensor0IntegrationWeight
auto getFTensor0IntegrationWeight()
Get integration weights.
Definition: ForcesAndSourcesCore.hpp:1240
MoFEM::EntitiesFieldData::EntData::getFTensor0N
FTensor::Tensor0< FTensor::PackPtr< double *, 1 > > getFTensor0N(const FieldApproximationBase base)
Get base function as Tensor0.
Definition: EntitiesFieldData.hpp:1502
PoissonExample::OpK::nbIntegrationPts
int nbIntegrationPts
number of integration points
Definition: PoissonOperators.hpp:79
a
constexpr double a
Definition: approx_sphere.cpp:30
PoissonExample::OpK::locMat
MatrixDouble locMat
local entity block matrix
Definition: PoissonOperators.hpp:83
PoissonExample::OpK::nbCols
int nbCols
number if dof on column
Definition: PoissonOperators.hpp:78
PoissonExample::OpKt::A
boost::function< double(const double)> A
Definition: PoissonOperators.hpp:656
MoFEM::getFTensor0FromVec
static auto getFTensor0FromVec(ublas::vector< T, A > &data)
Get tensor rank 0 (scalar) form data vector.
Definition: Templates.hpp:135
PoissonExample::OpK::i
FTensor::Index< 'i', 3 > i
summit Index
Definition: PoissonOperators.hpp:82
PoissonExample::OpK::OpK
OpK(bool symm=true)
Definition: PoissonOperators.hpp:30
PoissonExample::OpKt::gradVals
boost::shared_ptr< MatrixDouble > gradVals
Definition: PoissonOperators.hpp:659
PoissonExample::OpKt::diffA
boost::function< double(const double)> diffA
Definition: PoissonOperators.hpp:657
PoissonExample::OpK::nbRows
int nbRows
< error code
Definition: PoissonOperators.hpp:77
MoFEM::EntitiesFieldData::EntData::getFTensor1DiffN
FTensor::Tensor1< FTensor::PackPtr< double *, Tensor_Dim >, Tensor_Dim > getFTensor1DiffN(const FieldApproximationBase base)
Get derivatives of base functions.
Definition: EntitiesFieldData.cpp:526
FTensor::Tensor0
Definition: Tensor0.hpp:16
MoFEMFunctionReturn
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:429
MoFEMFunctionBegin
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:359