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EshelbianPlasticity::HMHNeohookean::OpSpatialPhysical_du_du Struct Reference
Inheritance diagram for EshelbianPlasticity::HMHNeohookean::OpSpatialPhysical_du_du:
[legend]
Collaboration diagram for EshelbianPlasticity::HMHNeohookean::OpSpatialPhysical_du_du:
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Public Member Functions

 OpSpatialPhysical_du_du (std::string row_field, std::string col_field, boost::shared_ptr< DataAtIntegrationPts > data_ptr, const double alpha)
 
MoFEMErrorCode integrate (EntData &row_data, EntData &col_data)
 
- Public Member Functions inherited from EshelbianPlasticity::OpAssembleVolumePositiveDefine
MoFEMErrorCode doWork (int side, EntityType type, EntData &data)
 Operator for linear form, usually to calculate values on right hand side.
 
MoFEMErrorCode doWork (int row_side, int col_side, EntityType row_type, EntityType col_type, EntData &row_data, EntData &col_data)
 Operator for bi-linear form, usually to calculate values on left hand side.
 
- Public Member Functions inherited from EshelbianPlasticity::OpAssembleVolume
MoFEMErrorCode assemble (int row_side, int col_side, EntityType row_type, EntityType col_type, EntData &row_data, EntData &col_data)
 
- Public Member Functions inherited from EshelbianPlasticity::OpAssembleBasic< VolUserDataOperator >
 OpAssembleBasic (const std::string &field_name, boost::shared_ptr< DataAtIntegrationPts > data_ptr, const char type)
 
 OpAssembleBasic (std::string row_field, std::string col_field, boost::shared_ptr< DataAtIntegrationPts > data_ptr, const char type, const bool assemble_symmetry, ScaleOff scale_off=[]() { return 1;})
 
 OpAssembleBasic (const FieldSpace space)
 
virtual MoFEMErrorCode integrate (EntData &data)
 
virtual MoFEMErrorCode integrate (int row_side, EntityType row_type, EntData &data)
 
virtual MoFEMErrorCode assemble (EntData &data)
 
virtual MoFEMErrorCode assemble (int row_side, EntityType row_type, EntData &data)
 
- Public Member Functions inherited from MoFEM::VolumeElementForcesAndSourcesCore::UserDataOperator
int getNumNodes ()
 get element number of nodes
 
const EntityHandlegetConn ()
 get element connectivity
 
double getVolume () const
 element volume (linear geometry)
 
doublegetVolume ()
 element volume (linear geometry)
 
FTensor::Tensor2< double *, 3, 3 > & getJac ()
 get element Jacobian
 
FTensor::Tensor2< double *, 3, 3 > & getInvJac ()
 get element inverse Jacobian
 
VectorDoublegetCoords ()
 nodal coordinates
 
VolumeElementForcesAndSourcesCoregetVolumeFE () const
 return pointer to Generic Volume Finite Element object
 
- Public Member Functions inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
 UserDataOperator (const FieldSpace space, const char type=OPSPACE, const bool symm=true)
 
 UserDataOperator (const std::string field_name, const char type, const bool symm=true)
 
 UserDataOperator (const std::string row_field_name, const std::string col_field_name, const char type, const bool symm=true)
 
boost::shared_ptr< const NumeredEntFiniteElementgetNumeredEntFiniteElementPtr () const
 Return raw pointer to NumeredEntFiniteElement.
 
EntityHandle getFEEntityHandle () const
 Return finite element entity handle.
 
int getFEDim () const
 Get dimension of finite element.
 
EntityType getFEType () const
 Get dimension of finite element.
 
boost::weak_ptr< SideNumbergetSideNumberPtr (const int side_number, const EntityType type)
 Get the side number pointer.
 
EntityHandle getSideEntity (const int side_number, const EntityType type)
 Get the side entity.
 
int getNumberOfNodesOnElement () const
 Get the number of nodes on finite element.
 
MoFEMErrorCode getProblemRowIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 Get row indices.
 
MoFEMErrorCode getProblemColIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 Get col indices.
 
const FEMethodgetFEMethod () const
 Return raw pointer to Finite Element Method object.
 
int getOpType () const
 Get operator types.
 
void setOpType (const OpType type)
 Set operator type.
 
void addOpType (const OpType type)
 Add operator type.
 
int getNinTheLoop () const
 get number of finite element in the loop
 
int getLoopSize () const
 get size of elements in the loop
 
std::string getFEName () const
 Get name of the element.
 
ForcesAndSourcesCoregetPtrFE () const
 
ForcesAndSourcesCoregetSidePtrFE () const
 
ForcesAndSourcesCoregetRefinePtrFE () const
 
const PetscData::SwitchesgetDataCtx () const
 
const KspMethod::KSPContext getKSPCtx () const
 
const SnesMethod::SNESContext getSNESCtx () const
 
const TSMethod::TSContext getTSCtx () const
 
Vec getKSPf () const
 
Mat getKSPA () const
 
Mat getKSPB () const
 
Vec getSNESf () const
 
Vec getSNESx () const
 
Mat getSNESA () const
 
Mat getSNESB () const
 
Vec getTSu () const
 
Vec getTSu_t () const
 
Vec getTSu_tt () const
 
Vec getTSf () const
 
Mat getTSA () const
 
Mat getTSB () const
 
int getTSstep () const
 
double getTStime () const
 
double getTStimeStep () const
 
double getTSa () const
 
double getTSaa () const
 
MatrixDoublegetGaussPts ()
 matrix of integration (Gauss) points for Volume Element
 
auto getFTensor0IntegrationWeight ()
 Get integration weights.
 
MatrixDoublegetCoordsAtGaussPts ()
 Gauss points and weight, matrix (nb. of points x 3)
 
auto getFTensor1CoordsAtGaussPts ()
 Get coordinates at integration points assuming linear geometry.
 
double getMeasure () const
 get measure of element
 
doublegetMeasure ()
 get measure of element
 
MoFEMErrorCode loopSide (const string &fe_name, ForcesAndSourcesCore *side_fe, const size_t dim, const EntityHandle ent_for_side=0, boost::shared_ptr< Range > fe_range=nullptr, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy, AdjCache *adj_cache=nullptr)
 User calls this function to loop over elements on the side of face. This function calls finite element with its operator to do calculations.
 
MoFEMErrorCode loopThis (const string &fe_name, ForcesAndSourcesCore *this_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User calls this function to loop over the same element using a different set of integration points. This function calls finite element with its operator to do calculations.
 
MoFEMErrorCode loopParent (const string &fe_name, ForcesAndSourcesCore *parent_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User calls this function to loop over parent elements. This function calls finite element with its operator to do calculations.
 
MoFEMErrorCode loopChildren (const string &fe_name, ForcesAndSourcesCore *child_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User calls this function to loop over parent elements. This function calls finite element with its operator to do calculations.
 
MoFEMErrorCode loopRange (const string &fe_name, ForcesAndSourcesCore *range_fe, boost::shared_ptr< Range > fe_range, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 Iterate over range of elements.
 
- Public Member Functions inherited from MoFEM::DataOperator
 DataOperator (const bool symm=true)
 
virtual ~DataOperator ()=default
 
virtual MoFEMErrorCode opLhs (EntitiesFieldData &row_data, EntitiesFieldData &col_data)
 
virtual MoFEMErrorCode opRhs (EntitiesFieldData &data, const bool error_if_no_base=false)
 
bool getSymm () const
 Get if operator uses symmetry of DOFs or not.
 
void setSymm ()
 set if operator is executed taking in account symmetry
 
void unSetSymm ()
 unset if operator is executed for non symmetric problem
 

Private Attributes

const double alphaU
 

Additional Inherited Members

- Public Types inherited from EshelbianPlasticity::OpAssembleVolume
using OP = OpAssembleBasic<VolUserDataOperator>
 
- Public Types inherited from EshelbianPlasticity::OpAssembleBasic< VolUserDataOperator >
using ScaleOff
 
- Public Types inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
enum  OpType {
  OPROW = 1 << 0 , OPCOL = 1 << 1 , OPROWCOL = 1 << 2 , OPSPACE = 1 << 3 ,
  OPLAST = 1 << 3
}
 Controls loop over entities on element. More...
 
using AdjCache
 
- Public Types inherited from MoFEM::DataOperator
using DoWorkLhsHookFunType
 
using DoWorkRhsHookFunType
 
- Public Attributes inherited from EshelbianPlasticity::OpAssembleBasic< VolUserDataOperator >
const bool assembleSymmetry
 
boost::shared_ptr< DataAtIntegrationPtsdataAtPts
 data at integration pts
 
VectorDouble nF
 local right hand side vector
 
MatrixDouble K
 local tangent matrix
 
MatrixDouble transposeK
 
ScaleOff scaleOff
 
- Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
char opType
 
std::string rowFieldName
 
std::string colFieldName
 
FieldSpace sPace
 
- Public Attributes inherited from MoFEM::DataOperator
DoWorkLhsHookFunType doWorkLhsHook
 
DoWorkRhsHookFunType doWorkRhsHook
 
bool sYmm
 If true assume that matrix is symmetric structure.
 
std::array< bool, MBMAXTYPE > doEntities
 If true operator is executed for entity.
 
booldoVertices
 \deprectaed If false skip vertices
 
booldoEdges
 \deprectaed If false skip edges
 
booldoQuads
 \deprectaed
 
booldoTris
 \deprectaed
 
booldoTets
 \deprectaed
 
booldoPrisms
 \deprectaed
 
- Static Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
static const char *const OpTypeNames []
 
- Protected Member Functions inherited from MoFEM::VolumeElementForcesAndSourcesCore::UserDataOperator
MoFEMErrorCode setPtrFE (ForcesAndSourcesCore *ptr)
 
- Protected Member Functions inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
- Protected Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
ForcesAndSourcesCoreptrFE
 
- Static Protected Attributes inherited from EshelbianPlasticity::OpAssembleVolume
static std::map< std::pair< std::string, std::string >, MatrixDouble > mapMatrix
 

Detailed Description

Definition at line 337 of file HMHNeohookean.cpp.

Constructor & Destructor Documentation

◆ OpSpatialPhysical_du_du()

EshelbianPlasticity::HMHNeohookean::OpSpatialPhysical_du_du::OpSpatialPhysical_du_du ( std::string row_field,
std::string col_field,
boost::shared_ptr< DataAtIntegrationPts > data_ptr,
const double alpha )

Definition at line 634 of file HMHNeohookean.cpp.

637 : OpAssembleVolumePositiveDefine(row_field, col_field, data_ptr, OPROWCOL,
638 false),
639 alphaU(alpha) {
640 sYmm = false;
641}
bool sYmm
If true assume that matrix is symmetric structure.
@ OPROWCOL
operator doWork is executed on FE rows &columns

Member Function Documentation

◆ integrate()

MoFEMErrorCode EshelbianPlasticity::HMHNeohookean::OpSpatialPhysical_du_du::integrate ( EntData & row_data,
EntData & col_data )
virtual

Reimplemented from EshelbianPlasticity::OpAssembleBasic< VolUserDataOperator >.

Definition at line 644 of file HMHNeohookean.cpp.

645 {
647
648 auto neohookean_ptr =
649 boost::dynamic_pointer_cast<HMHNeohookean>(dataAtPts->physicsPtr);
650 if (!neohookean_ptr) {
651 SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
652 "Pointer to HMHNeohookean is null");
653 }
654 auto [def_c10, def_K] =
655 neohookean_ptr->getMaterialParameters(getFEEntityHandle());
656
657 double c10 = def_c10 / neohookean_ptr->eqScaling;
658 double alpha_u = alphaU / neohookean_ptr->eqScaling;
659 double lambda = def_K / neohookean_ptr->eqScaling;
660
661 auto time_step = getTStimeStep();
662 double alpha_grad_u =
663 neohookean_ptr->alphaGradU / neohookean_ptr->eqScaling;// / time_step;
664
667
668 constexpr auto t_kd_sym = FTensor::Kronecker_Delta_symmetric<int>();
669 constexpr auto t_kd = FTensor::Kronecker_Delta<int>();
670
671 auto t_L = symm_L_tensor();
672 auto t_diff = diff_tensor();
673
674 int nb_integration_pts = row_data.getN().size1();
675 int row_nb_dofs = row_data.getIndices().size();
676 int col_nb_dofs = col_data.getIndices().size();
677
678 auto get_ftensor2 = [](MatrixDouble &m, const int r, const int c) {
680 size_symm>(
681
682 &m(r + 0, c + 0), &m(r + 0, c + 1), &m(r + 0, c + 2), &m(r + 0, c + 3),
683 &m(r + 0, c + 4), &m(r + 0, c + 5),
684
685 &m(r + 1, c + 0), &m(r + 1, c + 1), &m(r + 1, c + 2), &m(r + 1, c + 3),
686 &m(r + 1, c + 4), &m(r + 1, c + 5),
687
688 &m(r + 2, c + 0), &m(r + 2, c + 1), &m(r + 2, c + 2), &m(r + 2, c + 3),
689 &m(r + 2, c + 4), &m(r + 2, c + 5),
690
691 &m(r + 3, c + 0), &m(r + 3, c + 1), &m(r + 3, c + 2), &m(r + 3, c + 3),
692 &m(r + 3, c + 4), &m(r + 3, c + 5),
693
694 &m(r + 4, c + 0), &m(r + 4, c + 1), &m(r + 4, c + 2), &m(r + 4, c + 3),
695 &m(r + 4, c + 4), &m(r + 4, c + 5),
696
697 &m(r + 5, c + 0), &m(r + 5, c + 1), &m(r + 5, c + 2), &m(r + 5, c + 3),
698 &m(r + 5, c + 4), &m(r + 5, c + 5)
699
700 );
701 };
702
709
710 auto v = getVolume();
711 auto ts_a = getTSa();
712 auto t_w = getFTensor0IntegrationWeight();
713
714 int row_nb_base_functions = row_data.getN().size2();
715 auto t_row_base_fun = row_data.getFTensor0N();
716 auto t_row_grad_fun = row_data.getFTensor1DiffN<3>();
717
718 auto t_grad_h1 = getFTensor2FromMat<3, 3>(dataAtPts->wGradH1AtPts);
719 auto t_diff_u =
720 getFTensor4DdgFromMat<3, 3, 1>(dataAtPts->diffStretchTensorAtPts);
721 auto t_log_u =
722 getFTensor2SymmetricFromMat<3>(dataAtPts->logStretchTensorAtPts);
723 auto t_log_u2_h1 =
724 getFTensor2SymmetricFromMat<3>(dataAtPts->logStretch2H1AtPts);
725 auto t_u = getFTensor2SymmetricFromMat<3>(dataAtPts->stretchTensorAtPts);
726 auto t_approx_P_adjoint__dstretch =
727 getFTensor2FromMat<3, 3>(dataAtPts->adjointPdstretchAtPts);
728 auto t_eigen_vals = getFTensor1FromMat<3>(dataAtPts->eigenVals);
729 auto t_eigen_vecs = getFTensor2FromMat<3, 3>(dataAtPts->eigenVecs);
730 auto &nbUniq = dataAtPts->nbUniq;
731 auto t_nb_uniq =
732 FTensor::Tensor0<FTensor::PackPtr<int *, 1>>(nbUniq.data().data());
733
734 auto no_h1 = [&]() {
736
737 for (int gg = 0; gg != nb_integration_pts; ++gg) {
738 double a = v * t_w;
739 ++t_w;
740
741 auto neohookean = [c10](auto v) { return fun_neohookean(c10, v); };
742 auto d_neohookean = [c10, lambda](auto v) {
743 return fun_d_neohookean(c10, v);
744 };
745
746 auto t_diff_neohookean = EigenMatrix::getDiffMat(
747 t_eigen_vals, t_eigen_vecs, neohookean, d_neohookean, t_nb_uniq);
748
749 const auto tr = t_log_u(i, i);
751 t_dP(L, J) = -t_L(i, j, L) * ((t_diff_neohookean(i, j, k, l) +
753 t_kd_sym(i, j) * t_kd_sym(k, l)) *
754 t_L(k, l, J));
755 t_dP(L, J) -= (alpha_u * ts_a) *
756 (t_L(i, j, L) * (t_diff(i, j, k, l) * t_L(k, l, J)));
757
758 if constexpr (1) {
760 t_deltaP(i, j) = (t_approx_P_adjoint__dstretch(i, j) ||
761 t_approx_P_adjoint__dstretch(j, i)) /
762 2.;
763 auto t_diff2_uP = EigenMatrix::getDiffDiffMat(
764 t_eigen_vals, t_eigen_vecs, EshelbianCore::f, EshelbianCore::d_f,
765 EshelbianCore::dd_f, t_deltaP, t_nb_uniq);
766 t_dP(L, J) += t_L(i, j, L) * (t_diff2_uP(i, j, k, l) * t_L(k, l, J));
767 }
768 ++t_approx_P_adjoint__dstretch;
769 ++t_log_u;
770 ++t_eigen_vals;
771 ++t_eigen_vecs;
772 ++t_nb_uniq;
773
774 int rr = 0;
775 for (; rr != row_nb_dofs / size_symm; ++rr) {
776 auto t_col_base_fun = col_data.getFTensor0N(gg, 0);
777 auto t_col_grad_fun = col_data.getFTensor1DiffN<3>(gg, 0);
778
779 auto t_m = get_ftensor2(K, 6 * rr, 0);
780 for (int cc = 0; cc != col_nb_dofs / size_symm; ++cc) {
781 double b = a * t_row_base_fun * t_col_base_fun;
782 double c = (a * alpha_grad_u * ts_a) *
783 (t_row_grad_fun(i) * t_col_grad_fun(i));
784 t_m(L, J) -= b * t_dP(L, J);
785 t_m(L, J) += c * t_kd_sym(L, J);
786
787 ++t_m;
788 ++t_col_base_fun;
789 ++t_col_grad_fun;
790 }
791 ++t_row_base_fun;
792 ++t_row_grad_fun;
793 }
794
795 for (; rr != row_nb_base_functions; ++rr) {
796 ++t_row_base_fun;
797 ++t_row_grad_fun;
798 }
799
800 }
802 };
803
804 auto large = [&]() {
806 SETERRQ(PETSC_COMM_SELF, MOFEM_NOT_IMPLEMENTED,
807 "Not implemented for Neo-Hookean (used ADOL-C)");
809 };
810
813 CHKERR no_h1();
814 break;
815 case LARGE_ROT:
816 case MODERATE_ROT:
817 CHKERR large();
818 break;
819 default:
820 SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
821 "gradApproximator not handled");
822 };
823
825}
#define FTENSOR_INDEX(DIM, I)
constexpr double a
constexpr int SPACE_DIM
Kronecker Delta class symmetric.
Kronecker Delta class.
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
@ MOFEM_DATA_INCONSISTENCY
Definition definitions.h:31
@ MOFEM_NOT_IMPLEMENTED
Definition definitions.h:32
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
#define CHKERR
Inline error check.
constexpr auto t_kd
FTensor::Index< 'i', SPACE_DIM > i
static double lambda
const double c
speed of light (cm/ns)
const double v
phase velocity of light in medium (cm/ns)
const double n
refractive index of diffusive medium
FTensor::Index< 'J', DIM1 > J
Definition level_set.cpp:30
FTensor::Index< 'l', 3 > l
FTensor::Index< 'j', 3 > j
FTensor::Index< 'k', 3 > k
auto getDiffMat(A &&t_val, B &&t_vec, Fun< double > f, Fun< double > d_f, const int nb)
Get the Diff Mat object.
auto getDiffDiffMat(A &&t_val, B &&t_vec, Fun< double > f, Fun< double > d_f, Fun< double > dd_f, C &&t_S, const int nb)
Get the Diff Diff Mat object.
static constexpr auto size_symm
int r
Definition sdf.py:8
FTensor::Index< 'm', 3 > m
static boost::function< double(const double)> f
static boost::function< double(const double)> dd_f
static boost::function< double(const double)> d_f
static double fun_diff_neohookean_bulk(double K, double tr)
Definition of derivative of axiator of Neo-hookean function.
static double fun_d_neohookean(double c10, double v)
Definition of derivative of Neo-hookean function.
static double fun_neohookean(double c10, double v)
Definition of Neo-hookean function.
FTensor::Tensor1< FTensor::PackPtr< double *, Tensor_Dim >, Tensor_Dim > getFTensor1DiffN(const FieldApproximationBase base)
Get derivatives of base functions.
FTensor::Tensor0< FTensor::PackPtr< double *, 1 > > getFTensor0N(const FieldApproximationBase base)
Get base function as Tensor0.
MatrixDouble & getN(const FieldApproximationBase base)
get base functions this return matrix (nb. of rows is equal to nb. of Gauss pts, nb....
const VectorInt & getIndices() const
Get global indices of dofs on entity.
EntityHandle getFEEntityHandle() const
Return finite element entity handle.
auto getFTensor0IntegrationWeight()
Get integration weights.

Member Data Documentation

◆ alphaU

const double EshelbianPlasticity::HMHNeohookean::OpSpatialPhysical_du_du::alphaU
private

Definition at line 344 of file HMHNeohookean.cpp.


The documentation for this struct was generated from the following file: