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Public Types | Public Member Functions | Protected Attributes | List of all members
EshelbianPlasticity::OpTreeSearch Struct Reference
Inheritance diagram for EshelbianPlasticity::OpTreeSearch:
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Collaboration diagram for EshelbianPlasticity::OpTreeSearch:
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Public Types

using UOP = FaceElementForcesAndSourcesCore::UserDataOperator
 

Public Member Functions

 OpTreeSearch (boost::shared_ptr< ContactTree > contact_tree_ptr, boost::shared_ptr< MatrixDouble > u_h1_ptr, boost::shared_ptr< MatrixDouble > traction_ptr, Range r, moab::Interface *post_proc_mesh_ptr, std::vector< EntityHandle > *map_gauss_pts_ptr)
 
MoFEMErrorCode doWork (int side, EntityType type, EntitiesFieldData::EntData &data)
 

Protected Attributes

boost::shared_ptr< ContactTreecontactTreePtr
 
boost::shared_ptr< MatrixDouble > uH1Ptr
 
boost::shared_ptr< MatrixDouble > tractionPtr
 
moab::Interface * postProcMeshPtr = nullptr
 
std::vector< EntityHandle > * mapGaussPtsPtr = nullptr
 
Range contactRange
 

Detailed Description

Definition at line 1458 of file EshelbianContact.cpp.

Member Typedef Documentation

◆ UOP

using EshelbianPlasticity::OpTreeSearch::UOP = FaceElementForcesAndSourcesCore::UserDataOperator

Definition at line 1460 of file EshelbianContact.cpp.

Constructor & Destructor Documentation

◆ OpTreeSearch()

EshelbianPlasticity::OpTreeSearch::OpTreeSearch ( boost::shared_ptr< ContactTree contact_tree_ptr,
boost::shared_ptr< MatrixDouble >  u_h1_ptr,
boost::shared_ptr< MatrixDouble >  traction_ptr,
Range  r,
moab::Interface *  post_proc_mesh_ptr,
std::vector< EntityHandle > *  map_gauss_pts_ptr 
)

Definition at line 1483 of file EshelbianContact.cpp.

1492 : UOP(NOSPACE, UOP::OPSPACE), contactTreePtr(contact_tree_ptr),
1493 uH1Ptr(u_h1_ptr), tractionPtr(traction_ptr),
1494 postProcMeshPtr(post_proc_mesh_ptr), mapGaussPtsPtr(map_gauss_pts_ptr),
1495 contactRange(r) {}
@ NOSPACE
Definition definitions.h:83
boost::shared_ptr< ContactTree > contactTreePtr
std::vector< EntityHandle > * mapGaussPtsPtr
boost::shared_ptr< MatrixDouble > uH1Ptr
boost::shared_ptr< MatrixDouble > tractionPtr
FaceElementForcesAndSourcesCore::UserDataOperator UOP

Member Function Documentation

◆ doWork()

MoFEMErrorCode EshelbianPlasticity::OpTreeSearch::doWork ( int  side,
EntityType  type,
EntitiesFieldData::EntData data 
)

Definition at line 1497 of file EshelbianContact.cpp.

1498 {
1500
1501 auto &m_field = getPtrFE()->mField;
1502 auto fe_ent = getNumeredEntFiniteElementPtr()->getEnt();
1503 auto fe_id = id_from_handle(fe_ent);
1504
1505 if (contactRange.find(fe_ent) == contactRange.end())
1507
1508 FTensor::Index<'i', 3> i;
1509 FTensor::Index<'j', 3> j;
1510
1511 const auto nb_gauss_pts = getGaussPts().size2();
1512
1513 auto t_disp_h1 = getFTensor1FromMat<3>(*uH1Ptr);
1514 auto t_coords = getFTensor1CoordsAtGaussPts();
1515 auto t_traction = getFTensor1FromMat<3>(*tractionPtr);
1516
1517 auto next = [&]() {
1518 ++t_disp_h1;
1519 ++t_traction;
1520 ++t_coords;
1521 };
1522
1523 auto get_ele_centre = [i](auto t_ele_coords) {
1524 FTensor::Tensor1<double, 3> t_ele_center;
1525 t_ele_center(i) = 0;
1526 for (int nn = 0; nn != 3; nn++) {
1527 t_ele_center(i) += t_ele_coords(i);
1528 ++t_ele_coords;
1529 }
1530 t_ele_center(i) /= 3;
1531 return t_ele_center;
1532 };
1533
1534 auto get_ele_radius = [i](auto t_ele_center, auto t_ele_coords) {
1536 t_n0(i) = t_ele_center(i) - t_ele_coords(i);
1537 return t_n0.l2();
1538 };
1539
1540 auto get_face_conn = [this](auto face) {
1541 const EntityHandle *conn;
1542 int num_nodes;
1543 CHK_MOAB_THROW(contactTreePtr->getPostProcMesh().get_connectivity(
1544 face, conn, num_nodes, true),
1545 "get conn");
1546 if (num_nodes != 3) {
1547 CHK_THROW_MESSAGE(MOFEM_DATA_INCONSISTENCY, "face is not a triangle");
1548 }
1549 return conn;
1550 };
1551
1552 auto get_face_coords = [this](auto conn) {
1553 std::array<double, 9> coords;
1554 CHKERR contactTreePtr->getPostProcMesh().get_coords(conn, 3, coords.data());
1555 return coords;
1556 };
1557
1558 auto get_closet_face = [this](auto *point_ptr, auto r) {
1559 FTensor::Tensor1<double, 3> t_point_out;
1560 std::vector<EntityHandle> faces_out;
1562 contactTreePtr->getTreeSurfPtr()->sphere_intersect_triangles(
1563 point_ptr, r / 8, contactTreePtr->getRootSetSurf(), faces_out),
1564 "get closest faces");
1565 return faces_out;
1566 };
1567
1568 auto get_faces_out = [this](auto *point_ptr, auto *unit_ray_ptr, auto radius,
1569 auto eps) {
1570 std::vector<double> distances_out;
1571 std::vector<EntityHandle> faces_out;
1573
1574 contactTreePtr->getTreeSurfPtr()->ray_intersect_triangles(
1575 distances_out, faces_out, contactTreePtr->getRootSetSurf(), eps,
1576 point_ptr, unit_ray_ptr, &radius),
1577
1578 "get closest faces");
1579 return std::make_pair(faces_out, distances_out);
1580 };
1581
1582 auto get_normal = [](auto &ele_coords) {
1584 Tools::getTriNormal(ele_coords.data(), &t_normal(0));
1585 return t_normal;
1586 };
1587
1588 auto make_map = [&](auto &face_out, auto &face_dist, auto &t_ray_point,
1589 auto &t_unit_ray, auto &t_master_coord) {
1590 FTensor::Index<'i', 3> i;
1591 FTensor::Index<'j', 3> j;
1592 std::map<double, EntityHandle> m;
1593 for (auto ii = 0; ii != face_out.size(); ++ii) {
1594 auto face_conn = get_face_conn(face_out[ii]);
1595 auto face_coords = get_face_coords(face_conn);
1596 auto t_face_normal = get_normal(face_coords);
1597 t_face_normal.normalize();
1599 t_x(i) = t_ray_point(i) + t_unit_ray(i) * face_dist[ii];
1601 t_chi(i, j) =
1602 t_x(i) * t_face_normal(j) - t_master_coord(i) * t_unit_ray(j);
1603 if (t_unit_ray(i) * t_face_normal(i) > std::cos(M_PI / 3)) {
1604 auto dot = std::sqrt(t_chi(i, j) * t_chi(i, j));
1605 m[dot] = face_out[ii];
1606 }
1607 }
1608 return m;
1609 };
1610
1611 auto get_tag_data = [this](auto tag, auto face, auto &vec) {
1613 int tag_length;
1614 CHKERR contactTreePtr->getPostProcMesh().tag_get_length(tag, tag_length);
1615 vec.resize(tag_length);
1616 CHKERR contactTreePtr->getPostProcMesh().tag_get_data(tag, &face, 1,
1617 &*vec.begin());
1619 };
1620
1621 auto create_tag = [this](const std::string tag_name, const int size) {
1622 double def_VAL[] = {0, 0, 0, 0, 0, 0, 0, 0, 0};
1623 Tag th;
1624 if (postProcMeshPtr) {
1625 CHKERR postProcMeshPtr->tag_get_handle(
1626 tag_name.c_str(), size, MB_TYPE_DOUBLE, th,
1627 MB_TAG_CREAT | MB_TAG_SPARSE, def_VAL);
1628 CHKERR postProcMeshPtr->tag_clear_data(th, &*mapGaussPtsPtr->begin(),
1629 mapGaussPtsPtr->size(), def_VAL);
1630 }
1631 return th;
1632 };
1633
1634 auto set_float_precision = [](const double x) {
1635 if (std::abs(x) < std::numeric_limits<float>::epsilon())
1636 return 0.;
1637 else
1638 return x;
1639 };
1640
1641 // scalars
1642 auto save_scal_tag = [&](auto &th, auto v, const int gg) {
1644 if (postProcMeshPtr) {
1645 v = set_float_precision(v);
1646 CHKERR postProcMeshPtr->tag_set_data(th, &(*mapGaussPtsPtr)[gg], 1, &v);
1647 }
1649 };
1650
1651 // adjacencies
1652 auto get_fe_adjacencies = [this](auto fe_ent) {
1653 Range adj_faces;
1654 CHK_MOAB_THROW(getFaceFE()->mField.get_moab().get_adjacencies(
1655 &fe_ent, 1, 2, false, adj_faces, moab::Interface::UNION),
1656 "get adj");
1657 std::set<int> adj_ids;
1658 for (auto f : adj_faces) {
1659 adj_ids.insert(id_from_handle(f));
1660 }
1661 return adj_ids;
1662 };
1663
1664 auto get_face_id = [this](auto face) {
1665 int id;
1666 if (contactTreePtr->getPostProcMesh().tag_get_data(
1667 contactTreePtr->thEleId, &face, 1, &id) == MB_SUCCESS) {
1668 return id;
1669 }
1670 return -1;
1671 };
1672
1673 auto get_body_id = [this](auto face) {
1674 int id;
1675 if (contactTreePtr->getPostProcMesh().tag_get_data(
1676 contactTreePtr->thBodyId, &face, 1, &id) == MB_SUCCESS) {
1677 return id;
1678 }
1679 return -1;
1680 };
1681
1682 auto get_face_part = [this](auto face) {
1683 const moab::Core *core_mesh_ptr =
1684 dynamic_cast<const moab::Core *>(&contactTreePtr->getPostProcMesh());
1685 auto pcomm_post_proc_mesh =
1686 MeshPCommRegistry::getOrCreate(const_cast<moab::Core *>(core_mesh_ptr));
1687 int part;
1688 if (contactTreePtr->getPostProcMesh().tag_get_data(
1689 pcomm_post_proc_mesh->part_tag(), &face, 1, &part) == MB_SUCCESS) {
1690 return part;
1691 }
1692 return -1;
1693 };
1694
1695 auto check_face = [&](auto face, auto fe_id, auto part) {
1696 auto face_id = get_face_id(face);
1697 auto face_part = get_face_part(face);
1698 if (face_id == fe_id && face_part == part)
1699 return true;
1700 return false;
1701 };
1702
1703 // vectors
1704 VectorDouble3 v(3);
1705 FTensor::Tensor1<FTensor::PackPtr<double *, 0>, 3> t_v(&v[0], &v[1], &v[2]);
1706 auto save_vec_tag = [&](auto &th, auto &t_d, const int gg) {
1708 if (postProcMeshPtr) {
1709 t_v(i) = t_d(i);
1710 for (auto &a : v.data())
1711 a = set_float_precision(a);
1712 CHKERR postProcMeshPtr->tag_set_data(th, &(*mapGaussPtsPtr)[gg], 1,
1713 &*v.data().begin());
1714 }
1716 };
1717
1718 Tag th_mark = create_tag("contact_mark", 1);
1719 Tag th_mark_slave = create_tag("contact_mark_slave", 1);
1720 Tag th_body_id = create_tag("contact_body_id", 1);
1721 Tag th_gap = create_tag("contact_gap", 1);
1722 Tag th_tn_master = create_tag("contact_tn_master", 1);
1723 Tag th_tn_slave = create_tag("contact_tn_slave", 1);
1724 Tag th_contact_traction = create_tag("contact_traction", 3);
1725 Tag th_contact_traction_master = create_tag("contact_traction_master", 3);
1726 Tag th_contact_traction_slave = create_tag("contact_traction_slave", 3);
1727 Tag th_c = create_tag("contact_c", 1);
1728 Tag th_normal = create_tag("contact_normal", 3);
1729 Tag th_dist = create_tag("contact_dip", 3);
1730
1731 auto t_ele_centre = get_ele_centre(getFTensor1Coords());
1732 auto ele_radius = get_ele_radius(t_ele_centre, getFTensor1Coords());
1733
1734 contactTreePtr->shadowDataMap.clear();
1735 auto &shadow_vec = contactTreePtr->shadowDataMap[fe_ent];
1736 shadow_vec.clear();
1737
1738 auto adj_fe_ids = get_fe_adjacencies(fe_ent);
1739
1740 for (auto gg = 0; gg != nb_gauss_pts; ++gg) {
1741
1742 FTensor::Tensor1<double, 3> t_spatial_coords;
1743 t_spatial_coords(i) = t_coords(i) + t_disp_h1(i);
1744
1745 if (postProcMeshPtr) {
1746 CHKERR save_vec_tag(th_contact_traction, t_traction, gg);
1747 }
1748
1749 auto faces_close = get_closet_face(&t_spatial_coords(0), ele_radius);
1750 for (auto face_close : faces_close) {
1751 if (check_face(face_close, fe_id, m_field.get_comm_rank())) {
1752
1753 auto body_id = get_body_id(face_close);
1754
1755 auto master_face_conn = get_face_conn(face_close);
1756 std::array<double, 9> master_coords;
1757 CHKERR contactTreePtr->getPostProcMesh().tag_get_data(
1758 contactTreePtr->thSmallX, master_face_conn, 3,
1759 master_coords.data());
1760 std::array<double, 9> master_traction;
1761 CHKERR contactTreePtr->getPostProcMesh().tag_get_data(
1762 contactTreePtr->thTraction, master_face_conn, 3,
1763 master_traction.data());
1764 auto t_normal_face_close = get_normal(master_coords);
1765 t_normal_face_close.normalize();
1766
1767 if (postProcMeshPtr) {
1768 double m = 1;
1769 CHKERR save_scal_tag(th_mark, m, gg);
1770 CHKERR save_scal_tag(th_body_id, static_cast<double>(body_id), gg);
1771 CHKERR save_vec_tag(th_normal, t_normal_face_close, gg);
1772 CHKERR save_vec_tag(th_contact_traction, t_traction, gg);
1773 }
1774
1775 FTensor::Tensor1<double, 3> t_unit_ray;
1776 t_unit_ray(i) = -t_normal_face_close(i);
1777 FTensor::Tensor1<double, 3> t_ray_point;
1778 t_ray_point(i) =
1779 t_spatial_coords(i) -
1780 t_unit_ray(i) * ContactOps::airplane_ray_distance * ele_radius;
1781
1782 constexpr double eps = 1e-3;
1783 auto [faces_out, faces_dist] =
1784 get_faces_out(&t_ray_point(0), &t_unit_ray(0),
1785 2 * ContactOps::airplane_ray_distance * ele_radius,
1786 eps * ele_radius);
1787
1788 auto m = make_map(faces_out, faces_dist, t_ray_point, t_unit_ray,
1789 t_spatial_coords);
1790 for (auto m_it = m.begin(); m_it != m.end(); ++m_it) {
1791 auto face = m_it->second;
1792 if (face != face_close) {
1793
1794 if (
1795
1796 (adj_fe_ids.find(get_face_id(face)) == adj_fe_ids.end() ||
1797 get_face_part(face) != m_field.get_comm_rank())
1798
1799 ) {
1800
1801 shadow_vec.push_back(ContactTree::FaceData());
1802 shadow_vec.back().gaussPtNb = gg;
1803
1804 auto slave_face_conn = get_face_conn(face);
1805 std::array<double, 9> slave_coords;
1806 CHKERR contactTreePtr->getPostProcMesh().tag_get_data(
1807 contactTreePtr->thSmallX, slave_face_conn, 3,
1808 slave_coords.data());
1809 auto t_normal_face = get_normal(slave_coords);
1810 std::array<double, 9> slave_tractions;
1811 CHKERR contactTreePtr->getPostProcMesh().tag_get_data(
1812 contactTreePtr->thTraction, slave_face_conn, 3,
1813 slave_tractions.data());
1814
1815 auto t_master_point =
1816 getFTensor1FromPtr<3>(shadow_vec.back().masterPoint.data());
1817 auto t_slave_point =
1818 getFTensor1FromPtr<3>(shadow_vec.back().slavePoint.data());
1819 auto t_ray_point_data =
1820 getFTensor1FromPtr<3>(shadow_vec.back().rayPoint.data());
1821 auto t_unit_ray_data =
1822 getFTensor1FromPtr<3>(shadow_vec.back().unitRay.data());
1823
1824 t_slave_point(i) = t_ray_point(i) + m_it->first * t_unit_ray(i);
1825
1826 auto eval_position = [&](auto &&t_elem_coords, auto &&t_point) {
1827 std::array<double, 2> loc_coords;
1830 &t_elem_coords(0, 0), &t_point(0), 1,
1831 loc_coords.data()),
1832 "get local coords");
1833 FTensor::Tensor1<double, 3> t_shape_fun;
1834 CHK_THROW_MESSAGE(Tools::shapeFunMBTRI<0>(&t_shape_fun(0),
1835 &loc_coords[0],
1836 &loc_coords[1], 1),
1837 "calc shape fun");
1838 FTensor::Index<'i', 3> i;
1839 FTensor::Index<'j', 3> j;
1840 FTensor::Tensor1<double, 3> t_point_out;
1841 t_point_out(i) = t_shape_fun(j) * t_elem_coords(j, i);
1842 return t_point_out;
1843 };
1844
1845 auto t_master_point_updated = eval_position(
1846 getFTensor2FromPtr<3, 3>(master_coords.data()),
1847 getFTensor1FromPtr<3>(shadow_vec.back().masterPoint.data()));
1848 t_master_point(i) = t_master_point_updated(i);
1849
1850 auto t_slave_point_updated = eval_position(
1851 getFTensor2FromPtr<3, 3>(slave_coords.data()),
1852 getFTensor1FromPtr<3>(shadow_vec.back().slavePoint.data()));
1853 t_slave_point(i) = t_slave_point_updated(i);
1854
1855 t_ray_point_data(i) = t_ray_point(i);
1856 t_unit_ray_data(i) = t_unit_ray(i);
1857
1858 std::copy(master_coords.begin(), master_coords.end(),
1859 shadow_vec.back().masterPointNodes.begin());
1860 std::copy(master_traction.begin(), master_traction.end(),
1861 shadow_vec.back().masterTractionNodes.begin());
1862 std::copy(slave_coords.begin(), slave_coords.end(),
1863 shadow_vec.back().slavePointNodes.begin());
1864 std::copy(slave_tractions.begin(), slave_tractions.end(),
1865 shadow_vec.back().slaveTractionNodes.begin());
1866
1867 shadow_vec.back().eleRadius = ele_radius;
1868
1869 // CHKERR get_tag_data(contactTreePtr->thIds, face,
1870 // shadow_vec.back().dofsSlaveIds);
1871 // CHKERR get_tag_data(contactTreePtr->thCoeff, face,
1872 // shadow_vec.back().dofsSlaveCoeff);
1873 // CHKERR get_tag_data(contactTreePtr->thBases, face,
1874 // shadow_vec.back().baseSlaveFuncs);
1875
1876 if (postProcMeshPtr) {
1877 auto [gap, tn_master, tn_slave, c, t_master_traction,
1878 t_slave_traction] =
1879 multiGetGap(&(shadow_vec.back()), t_spatial_coords);
1881 t_gap_vec(i) = t_slave_point(i) - t_spatial_coords(i);
1882 CHKERR save_scal_tag(th_gap, gap, gg);
1883 CHKERR save_scal_tag(th_tn_master, tn_master, gg);
1884 CHKERR save_scal_tag(th_tn_slave, tn_slave, gg);
1885 CHKERR save_scal_tag(th_c, c, gg);
1886 double m = 1;
1887 CHKERR save_scal_tag(th_mark_slave, m, gg);
1888 CHKERR save_vec_tag(th_dist, t_gap_vec, gg);
1889 CHKERR save_vec_tag(th_contact_traction_master,
1890 t_master_traction, gg);
1891 CHKERR save_vec_tag(th_contact_traction_slave, t_slave_traction,
1892 gg);
1893 }
1894
1895 break;
1896 }
1897 }
1898 }
1899 break;
1900 }
1901 }
1902 next();
1903 }
1904
1906}
constexpr double a
static const double eps
#define CHK_THROW_MESSAGE(err, msg)
Check and throw MoFEM exception.
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
#define CHK_MOAB_THROW(err, msg)
Check error code of MoAB function and throw MoFEM exception.
@ MOFEM_DATA_INCONSISTENCY
Definition definitions.h:31
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
#define CHKERR
Inline error check.
static const double face_coords[4][9]
FTensor::Index< 'i', SPACE_DIM > i
const double c
speed of light (cm/ns)
const double v
phase velocity of light in medium (cm/ns)
FTensor::Index< 'j', 3 > j
double airplane_ray_distance
auto multiGetGap(ContactTree::FaceData *face_data_ptr, FTensor::Tensor1< T1, 3 > &t_spatial_coords)
VectorBoundedArray< double, 3 > VectorDouble3
Definition Types.hpp:92
auto id_from_handle(const EntityHandle h)
int r
Definition sdf.py:205
FTensor::Index< 'm', 3 > m
static auto getOrCreate(moab::Core *core_mesh_ptr)
static MoFEMErrorCode getLocalCoordinatesOnReferenceThreeNodeTri(const double *elem_coords, const double *glob_coords, const int nb_nodes, double *local_coords)
Get the local coordinates on reference three node tri object.
Definition Tools.cpp:188
static MoFEMErrorCode getTriNormal(const double *coords, double *normal, double *d_normal=nullptr)
Get the Tri Normal objectGet triangle normal.
Definition Tools.cpp:353

Member Data Documentation

◆ contactRange

Range EshelbianPlasticity::OpTreeSearch::contactRange
protected

Definition at line 1480 of file EshelbianContact.cpp.

◆ contactTreePtr

boost::shared_ptr<ContactTree> EshelbianPlasticity::OpTreeSearch::contactTreePtr
protected

Definition at line 1474 of file EshelbianContact.cpp.

◆ mapGaussPtsPtr

std::vector<EntityHandle>* EshelbianPlasticity::OpTreeSearch::mapGaussPtsPtr = nullptr
protected

Definition at line 1478 of file EshelbianContact.cpp.

◆ postProcMeshPtr

moab::Interface* EshelbianPlasticity::OpTreeSearch::postProcMeshPtr = nullptr
protected

Definition at line 1477 of file EshelbianContact.cpp.

◆ tractionPtr

boost::shared_ptr<MatrixDouble> EshelbianPlasticity::OpTreeSearch::tractionPtr
protected

Definition at line 1476 of file EshelbianContact.cpp.

◆ uH1Ptr

boost::shared_ptr<MatrixDouble> EshelbianPlasticity::OpTreeSearch::uH1Ptr
protected

Definition at line 1475 of file EshelbianContact.cpp.


The documentation for this struct was generated from the following file: