Post post-proc data at points from hash maps. More...

#include "src/post_proc/PostProcBrokenMeshInMoabBase.hpp"

Inheritance diagram for MoFEM::OpPostProcMapInMoab< DIM1, DIM2, O >:

Collaboration diagram for MoFEM::OpPostProcMapInMoab< DIM1, DIM2, O >:

Public Types
using	ScalarDataPtr = std::variant< boost::shared_ptr< VectorDouble >, boost::shared_ptr< MatrixDouble > >

using	DataMapVec = std::map< std::string, ScalarDataPtr >

using	DataMapMat = std::map< std::string, boost::shared_ptr< MatrixDouble > >

Public Types inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
enum	OpType { OPROW = 1 << 0 , OPCOL = 1 << 1 , OPROWCOL = 1 << 2 , OPSPACE = 1 << 3 , OPLAST = 1 << 3 }
	Controls loop over entities on element. More...

using	AdjCache = std::map< EntityHandle, std::vector< boost::weak_ptr< NumeredEntFiniteElement > > >

Public Types inherited from MoFEM::DataOperator
using	DoWorkLhsHookFunType = boost::function< MoFEMErrorCode(DataOperator *op_ptr, int row_side, int col_side, EntityType row_type, EntityType col_type, EntitiesFieldData::EntData &row_data, EntitiesFieldData::EntData &col_data)>

using	DoWorkRhsHookFunType = boost::function< MoFEMErrorCode(DataOperator *op_ptr, int side, EntityType type, EntitiesFieldData::EntData &data)>

Public Member Functions
	OpPostProcMapInMoab (moab::Interface &post_proc_mesh, std::vector< EntityHandle > &map_gauss_pts, DataMapVec data_map_scalar, DataMapMat data_map_vec, DataMapMat data_map_mat, DataMapMat data_symm_map_mat)
	Construct a new OpPostProcMapInMoab object.

MoFEMErrorCode	doWork (int side, EntityType type, EntitiesFieldData::EntData &data)
	Operator for linear form, usually to calculate values on right hand side.

Public Member Functions inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
	UserDataOperator (const FieldSpace space, const char type=OPSPACE, const bool symm=true)
	Constructor for operators working on finite element spaces.

	UserDataOperator (const std::string field_name, const char type, const bool symm=true)
	Constructor for operators working on a single field.

	UserDataOperator (const std::string row_field_name, const std::string col_field_name, const char type, const bool symm=true)
	Constructor for operators working on two fields (bilinear forms)

boost::shared_ptr< const NumeredEntFiniteElement >	getNumeredEntFiniteElementPtr () const
	Return raw pointer to NumeredEntFiniteElement.

EntityHandle	getFEEntityHandle () const
	Return finite element entity handle.

int	getFEDim () const
	Get dimension of finite element.

EntityType	getFEType () const
	Get dimension of finite element.

boost::weak_ptr< SideNumber >	getSideNumberPtr (const int side_number, const EntityType type)
	Get the side number pointer.

EntityHandle	getSideEntity (const int side_number, const EntityType type)
	Get the side entity.

int	getNumberOfNodesOnElement () const
	Get the number of nodes on finite element.

MoFEMErrorCode	getProblemRowIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
	Get row indices.

MoFEMErrorCode	getProblemColIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
	Get col indices.

const FEMethod *	getFEMethod () const
	Return raw pointer to Finite Element Method object.

int	getOpType () const
	Get operator types.

void	setOpType (const OpType type)
	Set operator type.

void	addOpType (const OpType type)
	Add operator type.

int	getNinTheLoop () const
	get number of finite element in the loop

int	getLoopSize () const
	get size of elements in the loop

std::string	getFEName () const
	Get name of the element.

ForcesAndSourcesCore *	getPtrFE () const

ForcesAndSourcesCore *	getSidePtrFE () const

ForcesAndSourcesCore *	getRefinePtrFE () const

const PetscData::Switches &	getDataCtx () const

const KspMethod::KSPContext	getKSPCtx () const

const SnesMethod::SNESContext	getSNESCtx () const

const TSMethod::TSContext	getTSCtx () const

Vec	getKSPf () const

Mat	getKSPA () const

Mat	getKSPB () const

Vec	getSNESf () const

Vec	getSNESx () const

Mat	getSNESA () const

Mat	getSNESB () const

Vec	getTSu () const

Vec	getTSu_t () const

Vec	getTSu_tt () const

Vec	getTSf () const

Mat	getTSA () const

Mat	getTSB () const

int	getTSstep () const

double	getTStime () const

double	getTStimeStep () const

double	getTSa () const

double	getTSaa () const

MatrixDouble &	getGaussPts ()
	matrix of integration (Gauss) points for Volume Element

auto	getFTensor0IntegrationWeight ()
	Get integration weights.

MatrixDouble &	getCoordsAtGaussPts ()
	Gauss points and weight, matrix (nb. of points x 3)

auto	getFTensor1CoordsAtGaussPts ()
	Get coordinates at integration points assuming linear geometry.

double	getMeasure () const
	get measure of element

double &	getMeasure ()
	get measure of element

MoFEM::Interface &	getMField ()

moab::Interface &	getMoab ()

virtual boost::weak_ptr< ForcesAndSourcesCore >	getSubPipelinePtr () const

MoFEMErrorCode	loopSide (const string &fe_name, ForcesAndSourcesCore side_fe, const size_t dim, const EntityHandle ent_for_side=0, boost::shared_ptr< Range > fe_range=nullptr, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy, AdjCache adj_cache=nullptr)
	User calls this function to loop over elements on the side of face. This function calls finite element with its operator to do calculations.

MoFEMErrorCode	loopThis (const string &fe_name, ForcesAndSourcesCore *this_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
	User calls this function to loop over the same element using a different set of integration points. This function calls finite element with its operator to do calculations.

MoFEMErrorCode	loopParent (const string &fe_name, ForcesAndSourcesCore *parent_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
	User calls this function to loop over parent elements. This function calls finite element with its operator to do calculations.

MoFEMErrorCode	loopChildren (const string &fe_name, ForcesAndSourcesCore *child_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
	User calls this function to loop over parent elements. This function calls finite element with its operator to do calculations.

MoFEMErrorCode	loopRange (const string &fe_name, ForcesAndSourcesCore *range_fe, boost::shared_ptr< Range > fe_range, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
	Iterate over range of elements.

Public Member Functions inherited from MoFEM::DataOperator
	DataOperator (const bool symm=true)

virtual	~DataOperator ()=default

virtual MoFEMErrorCode	doWork (int row_side, int col_side, EntityType row_type, EntityType col_type, EntitiesFieldData::EntData &row_data, EntitiesFieldData::EntData &col_data)
	Operator for bi-linear form, usually to calculate values on left hand side.

virtual MoFEMErrorCode	opLhs (EntitiesFieldData &row_data, EntitiesFieldData &col_data)

virtual MoFEMErrorCode	opRhs (EntitiesFieldData &data, const bool error_if_no_base=false)

bool	getSymm () const
	Get if operator uses symmetry of DOFs or not.

void	setSymm ()
	set if operator is executed taking in account symmetry

void	unSetSymm ()
	unset if operator is executed for non symmetric problem

Private Attributes
moab::Interface &	postProcMesh

std::vector< EntityHandle > &	mapGaussPts

DataMapVec	dataMapScalar

DataMapMat	dataMapVec

DataMapMat	dataMapMat

DataMapMat	dataMapSymmMat

Additional Inherited Members
Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
char	opType

std::string	rowFieldName

std::string	colFieldName

FieldSpace	sPace

Public Attributes inherited from MoFEM::DataOperator
DoWorkLhsHookFunType	doWorkLhsHook

DoWorkRhsHookFunType	doWorkRhsHook

bool	sYmm
	If true assume that matrix is symmetric structure.

std::array< bool, MBMAXTYPE >	doEntities
	If true operator is executed for entity.

bool &	doVertices
	\deprectaed If false skip vertices

bool &	doEdges
	\deprectaed If false skip edges

bool &	doQuads
	\deprectaed

bool &	doTris
	\deprectaed

bool &	doTets
	\deprectaed

bool &	doPrisms
	\deprectaed

Static Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
static const char *const	OpTypeNames []

Protected Member Functions inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
virtual MoFEMErrorCode	setPtrFE (ForcesAndSourcesCore *ptr)

Protected Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
ForcesAndSourcesCore *	ptrFE

Detailed Description

template<int DIM1, int DIM2, typename O = ForcesAndSourcesCore::UserDataOperator>
struct MoFEM::OpPostProcMapInMoab< DIM1, DIM2, O >

Post post-proc data at points from hash maps.

Template Parameters

DIM1	dimension of vector in data_map_vec and first column of data_map_may
DIM2	dimension of second column in data_map_mat

Examples: /home/lk58p/mofem_install/vanilla_dev_release/mofem-cephas/mofem/users_modules/eshelbian_plasticity/src/impl/EshelbianPlasticity.cpp, cell_forces.cpp, mofem/atom_tests/operators_tests.cpp, mofem/atom_tests/scalar_check_approximation.cpp, mofem/atom_tests/tensor_divergence_operator.cpp, mofem/atom_tests/test_broken_space.cpp, mofem/tools/mesh_smoothing.cpp, mofem/tutorials/adv-0_plasticity/plastic.cpp, mofem/tutorials/adv-3_level_set/level_set.cpp, mofem/tutorials/adv-4_dynamic_first_order_con_law/dynamic_first_order_con_law.cpp, mofem/tutorials/adv-5_poroelasticity/seepage.cpp, mofem/tutorials/adv-6_dg_projection/between_meshes_dg_projection.cpp, mofem/tutorials/clx-0_acoustics/helmholtz.cpp, mofem/tutorials/cor-10_navier_stokes/navier_stokes.cpp, mofem/tutorials/cor-2to5_analytical_poisson/src/PoissonOperators.hpp, mofem/tutorials/cor-6_simple_elasticity/simple_elasticity.cpp, mofem/tutorials/cor-7_elasticity_mixed_formulation/elasticity_mixed_formulation.cpp, mofem/tutorials/cor-9_reaction_diffusion/reaction_diffusion.cpp, mofem/tutorials/fun-2_plot_base/plot_base.cpp, mofem/tutorials/mix-0_mixed_poisson/mixed_poisson.cpp, mofem/tutorials/mix-1_light_intensity_equation/phase.cpp, mofem/tutorials/scl-0_least_squares/approximation.cpp, mofem/tutorials/scl-1_poisson_2d_homogeneous/poisson_2d_homogeneous.cpp, mofem/tutorials/scl-6_heat_equation/heat_equation.cpp, mofem/tutorials/scl-7_wave_equation/wave_equation.cpp, mofem/tutorials/scl-8_heat_radiation/radiation.cpp, mofem/tutorials/scl-9_heat_method/heat_method.cpp, mofem/tutorials/vec-1_eigen_elasticity/eigen_elastic.cpp, mofem/tutorials/vec-3_nonlinear_dynamics/nonlinear_dynamic_elastic.cpp, mofem/tutorials/vec-4_shallow_wave/approx_sphere.cpp, mofem/tutorials/vec-4_shallow_wave/shallow_wave.cpp, mofem/tutorials/vec-5_free_surface/free_surface.cpp, mofem/tutorials/vec-6_dg_kirchhoff_plate/plate.cpp, mofem/tutorials/vec-7_shape_optimisation/adjoint.cpp, mofem/users_modules/adolc-plasticity/adolc_plasticity.cpp, mofem/users_modules/basic_finite_elements/elasticity/elasticity.cpp, mofem/users_modules/basic_finite_elements/nonlinear_elasticity/nonlinear_dynamics.cpp, nonlinear_elastic.cpp, plastic.cpp, thermo_elastic.cpp, and thermoplastic.cpp.

Definition at line 711 of file PostProcBrokenMeshInMoabBase.hpp.

Member Typedef Documentation

◆ DataMapMat

template<int DIM1, int DIM2, typename O = ForcesAndSourcesCore::UserDataOperator>

using MoFEM::OpPostProcMapInMoab< DIM1, DIM2, O >::DataMapMat = std::map<std::string, boost::shared_ptr<MatrixDouble> >

Definition at line 717 of file PostProcBrokenMeshInMoabBase.hpp.

◆ DataMapVec

template<int DIM1, int DIM2, typename O = ForcesAndSourcesCore::UserDataOperator>

using MoFEM::OpPostProcMapInMoab< DIM1, DIM2, O >::DataMapVec = std::map<std::string, ScalarDataPtr>

Definition at line 716 of file PostProcBrokenMeshInMoabBase.hpp.

◆ ScalarDataPtr

template<int DIM1, int DIM2, typename O = ForcesAndSourcesCore::UserDataOperator>

using MoFEM::OpPostProcMapInMoab< DIM1, DIM2, O >::ScalarDataPtr = std::variant<boost::shared_ptr<VectorDouble>, boost::shared_ptr<MatrixDouble> >

Definition at line 713 of file PostProcBrokenMeshInMoabBase.hpp.

Constructor & Destructor Documentation

◆ OpPostProcMapInMoab()

template<int DIM1, int DIM2, typename O = ForcesAndSourcesCore::UserDataOperator>

MoFEM::OpPostProcMapInMoab< DIM1, DIM2, O >::OpPostProcMapInMoab	(	moab::Interface &	post_proc_mesh,
		std::vector< EntityHandle > &	map_gauss_pts,
		DataMapVec	data_map_scalar,
		DataMapMat	data_map_vec,
		DataMapMat	data_map_mat,
		DataMapMat	data_symm_map_mat
	)

inline

Construct a new OpPostProcMapInMoab object.

Parameters

post_proc_mesh	postprocessing mesh
map_gauss_pts	map of gauss points to nodes of postprocessing mesh
data_map_scalar	hash map of scalar values (string is name of the tag)
data_map_vec	hash map of vector values
data_map_mat	hash map of second order tensor values
data_symm_map_mat	hash map of symmetric second order tensor values

Definition at line 730 of file PostProcBrokenMeshInMoabBase.hpp.

      : O(NOSPACE, O::OPSPACE), postProcMesh(post_proc_mesh),
        mapGaussPts(map_gauss_pts), dataMapScalar(data_map_scalar),
        dataMapVec(data_map_vec), dataMapMat(data_map_mat),
        dataMapSymmMat(data_symm_map_mat) {
    // Operator is only executed for vertices
    std::fill(&O::doEntities[MBEDGE], &O::doEntities[MBMAXTYPE], false);
  }

Member Function Documentation

◆ doWork()

template<int DIM1, int DIM2, typename O >

MoFEMErrorCode MoFEM::OpPostProcMapInMoab< DIM1, DIM2, O >::doWork	(	int	side,
		EntityType	type,
		EntitiesFieldData::EntData &	data
	)

virtual

Operator for linear form, usually to calculate values on right hand side.

Reimplemented from MoFEM::DataOperator.

Definition at line 755 of file PostProcBrokenMeshInMoabBase.hpp.

                                                                           {
  MoFEMFunctionBegin;
 
  std::array<double, 9> def;
  std::fill(def.begin(), def.end(), 0);
 
  auto get_tag = [&](const std::string name, size_t size) {
    Tag th;
    CHKERR postProcMesh.tag_get_handle(name.c_str(), size, MB_TYPE_DOUBLE, th,
                                       MB_TAG_CREAT | MB_TAG_SPARSE,
                                       def.data());
    return th;
  };
 
  MatrixDouble3by3 mat(3, 3);
 
  auto set_vector_3d = [&](auto &t) -> MatrixDouble3by3 & {
    mat.clear();
    for (size_t r = 0; r != DIM1; ++r)
      mat(0, r) = t(r);
    return mat;
  };
 
  auto set_matrix_3d = [&](auto &t) -> MatrixDouble3by3 & {
    mat.clear();
    for (size_t r = 0; r != DIM1; ++r)
      for (size_t c = 0; c != DIM2; ++c)
        mat(r, c) = t(r, c);
    return mat;
  };
 
  auto set_matrix_symm_3d = [&](auto &t) -> MatrixDouble3by3 & {
    mat.clear();
    for (size_t r = 0; r != DIM1; ++r)
      for (size_t c = 0; c != DIM1; ++c)
        mat(r, c) = t(r, c);
    return mat;
  };
 
  auto set_scalar = [&](auto t) -> MatrixDouble3by3 & {
    mat.clear();
    mat(0, 0) = t;
    return mat;
  };
 
  auto set_float_precision = [](const double x) {
    if (std::abs(x) < std::numeric_limits<float>::min())
      return static_cast<float>(0.);
    else
      return static_cast<float>(x);
  };
 
  auto set_float_max = [](const double x) {
    if (x > std::numeric_limits<float>::max())
      return std::numeric_limits<float>::max();
    else
      return static_cast<float>(x);
  };
 
  auto set_float_lowest = [](const double x) {
    if (x < std::numeric_limits<float>::lowest())
      return std::numeric_limits<float>::lowest();
    else
      return static_cast<float>(x);
  };
 
  auto set_tag = [&](auto th, auto gg, MatrixDouble3by3 &mat) {
    for (auto &v : mat.data())
      v = set_float_max(set_float_lowest(set_float_precision(v)));
    return postProcMesh.tag_set_data(th, &mapGaussPts[gg], 1,
                                     &*mat.data().begin());
  };
 
  for (auto &m : dataMapScalar) {
    if (const auto *vec_ptr =
            std::get_if<boost::shared_ptr<VectorDouble>>(&m.second);
        vec_ptr && *vec_ptr) {
      auto th = get_tag(m.first, 1);
      auto t_scl = getFTensor0FromVec(**vec_ptr);
      auto nb_integration_pts = O::getGaussPts().size2();
      for (int gg = 0; gg != nb_integration_pts; ++gg) {
        CHKERR set_tag(th, gg, set_scalar(t_scl));
        ++t_scl;
      }
    } else if (const auto *mat_ptr =
                   std::get_if<boost::shared_ptr<MatrixDouble>>(&m.second);
               mat_ptr && *mat_ptr) {
      auto th = get_tag(m.first, 1);
      auto nb_integration_pts = O::getGaussPts().size2();
      for (int gg = 0; gg != nb_integration_pts; ++gg)
        CHKERR set_tag(th, gg, set_scalar((**mat_ptr)(0, gg)));
    }
  }
 
  for (auto &m : dataMapVec) {
    if (m.second) {
      auto th = get_tag(m.first, 3);
      auto nb_integration_pts = O::getGaussPts().size2();
      auto t_vec = getFTensor1FromMat<DIM1>(m.second);
      for (int gg = 0; gg != nb_integration_pts; ++gg) {
        CHKERR set_tag(th, gg, set_vector_3d(t_vec));
        ++t_vec;
      }
    }
  }
 
  for (auto &m : dataMapMat) {
    if (m.second) {
      auto th = get_tag(m.first, 9);
      auto nb_integration_pts = O::getGaussPts().size2();
      auto t_mat = getFTensor2FromMat<DIM1, DIM2>(m.second);
      for (int gg = 0; gg != nb_integration_pts; ++gg) {
        CHKERR set_tag(th, gg, set_matrix_3d(t_mat));
        ++t_mat;
      }
    }
  }
 
  for (auto &m : dataMapSymmMat) {
    if (m.second) {
      auto th = get_tag(m.first, 9);
      auto nb_integration_pts = O::getGaussPts().size2();
      auto t_mat = getFTensor2SymmetricFromMat<DIM1>(m.second);
      for (int gg = 0; gg != nb_integration_pts; ++gg) {
        CHKERR set_tag(th, gg, set_matrix_symm_3d(t_mat));
        ++t_mat;
      }
    }
  }
 
  MoFEMFunctionReturn(0);
}