Inheritance diagram for EshelbianPlasticity::HMHHencky::OpTopoSpatialPhysical:

Collaboration diagram for EshelbianPlasticity::HMHHencky::OpTopoSpatialPhysical:

Public Member Functions
	OpTopoSpatialPhysical (const std::string &field_name, boost::shared_ptr< DataAtIntegrationPts > data_ptr, SmartPetscObj< Vec > assemble_vec, boost::shared_ptr< TopologicalData > topo_ptr, const double alpha_u, boost::shared_ptr< double > J_ptr)

MoFEMErrorCode	integrate (EntData &data)

MoFEMErrorCode	integrateHencky (EntData &data)

MoFEMErrorCode	integratePolyconvexHencky (EntData &data)

MoFEMErrorCode	assemble (int row_side, EntityType row_type, EntData &data) override

Public Member Functions inherited from OpAssembleVolume
MoFEMErrorCode	assemble (int row_side, int col_side, EntityType row_type, EntityType col_type, EntData &row_data, EntData &col_data)

Public Member Functions inherited from OpAssembleBasic< VolUserDataOperator >
	OpAssembleBasic (const std::string &field_name, boost::shared_ptr< DataAtIntegrationPts > data_ptr, const char type)

	OpAssembleBasic (std::string row_field, std::string col_field, boost::shared_ptr< DataAtIntegrationPts > data_ptr, const char type, const bool assemble_symmetry, ScaleOff scale_off=[]() { return 1;})

	OpAssembleBasic (const FieldSpace space)

virtual MoFEMErrorCode	integrate (EntData &data)

virtual MoFEMErrorCode	integrate (int row_side, EntityType row_type, EntData &data)

virtual MoFEMErrorCode	integrate (EntData &row_data, EntData &col_data)

virtual MoFEMErrorCode	assemble (EntData &data)

virtual MoFEMErrorCode	assemble (int row_side, EntityType row_type, EntData &data)

MoFEMErrorCode	doWork (int side, EntityType type, EntData &data)

MoFEMErrorCode	doWork (int row_side, int col_side, EntityType row_type, EntityType col_type, EntData &row_data, EntData &col_data)

Public Member Functions inherited from MoFEM::VolumeElementForcesAndSourcesCore::UserDataOperator
int	getNumNodes ()
	get element number of nodes

const EntityHandle *	getConn ()
	get element connectivity

double	getVolume () const
	element volume (linear geometry)

double &	getVolume ()
	element volume (linear geometry)

FTensor::Tensor2< double *, 3, 3 > &	getJac ()
	get element Jacobian

FTensor::Tensor2< double *, 3, 3 > &	getInvJac ()
	get element inverse Jacobian

VectorDouble &	getCoords ()
	nodal coordinates

VolumeElementForcesAndSourcesCore *	getVolumeFE () const
	return pointer to Generic Volume Finite Element object

Public Member Functions inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
	UserDataOperator (const FieldSpace space, const char type=OPSPACE, const bool symm=true)
	Constructor for operators working on finite element spaces.

	UserDataOperator (const std::string field_name, const char type, const bool symm=true)
	Constructor for operators working on a single field.

	UserDataOperator (const std::string row_field_name, const std::string col_field_name, const char type, const bool symm=true)
	Constructor for operators working on two fields (bilinear forms)

boost::shared_ptr< const NumeredEntFiniteElement >	getNumeredEntFiniteElementPtr () const
	Return raw pointer to NumeredEntFiniteElement.

EntityHandle	getFEEntityHandle () const
	Return finite element entity handle.

int	getFEDim () const
	Get dimension of finite element.

EntityType	getFEType () const
	Get dimension of finite element.

boost::weak_ptr< SideNumber >	getSideNumberPtr (const int side_number, const EntityType type)
	Get the side number pointer.

EntityHandle	getSideEntity (const int side_number, const EntityType type)
	Get the side entity.

int	getNumberOfNodesOnElement () const
	Get the number of nodes on finite element.

MoFEMErrorCode	getProblemRowIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
	Get row indices.

MoFEMErrorCode	getProblemColIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
	Get col indices.

const FEMethod *	getFEMethod () const
	Return raw pointer to Finite Element Method object.

int	getOpType () const
	Get operator types.

void	setOpType (const OpType type)
	Set operator type.

void	addOpType (const OpType type)
	Add operator type.

int	getNinTheLoop () const
	get number of finite element in the loop

int	getLoopSize () const
	get size of elements in the loop

std::string	getFEName () const
	Get name of the element.

ForcesAndSourcesCore *	getPtrFE () const

ForcesAndSourcesCore *	getSidePtrFE () const

ForcesAndSourcesCore *	getRefinePtrFE () const

const PetscData::Switches &	getDataCtx () const

const KspMethod::KSPContext	getKSPCtx () const

const SnesMethod::SNESContext	getSNESCtx () const

const TSMethod::TSContext	getTSCtx () const

Vec	getKSPf () const

Mat	getKSPA () const

Mat	getKSPB () const

Vec	getSNESf () const

Vec	getSNESx () const

Mat	getSNESA () const

Mat	getSNESB () const

Vec	getTSu () const

Vec	getTSu_t () const

Vec	getTSu_tt () const

Vec	getTSf () const

Mat	getTSA () const

Mat	getTSB () const

int	getTSstep () const

double	getTStime () const

double	getTStimeStep () const

double	getTSa () const

double	getTSaa () const

MatrixDouble &	getGaussPts ()
	matrix of integration (Gauss) points for Volume Element

auto	getFTensor0IntegrationWeight ()
	Get integration weights.

MatrixDouble &	getCoordsAtGaussPts ()
	Gauss points and weight, matrix (nb. of points x 3)

auto	getFTensor1CoordsAtGaussPts ()
	Get coordinates at integration points assuming linear geometry.

double	getMeasure () const
	get measure of element

double &	getMeasure ()
	get measure of element

MoFEM::Interface &	getMField ()

moab::Interface &	getMoab ()

virtual boost::weak_ptr< ForcesAndSourcesCore >	getSubPipelinePtr () const

MoFEMErrorCode	loopSide (const string &fe_name, ForcesAndSourcesCore side_fe, const size_t dim, const EntityHandle ent_for_side=0, boost::shared_ptr< Range > fe_range=nullptr, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy, AdjCache adj_cache=nullptr)
	User calls this function to loop over elements on the side of face. This function calls finite element with its operator to do calculations.

MoFEMErrorCode	loopThis (const string &fe_name, ForcesAndSourcesCore *this_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
	User calls this function to loop over the same element using a different set of integration points. This function calls finite element with its operator to do calculations.

MoFEMErrorCode	loopParent (const string &fe_name, ForcesAndSourcesCore *parent_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
	User calls this function to loop over parent elements. This function calls finite element with its operator to do calculations.

MoFEMErrorCode	loopChildren (const string &fe_name, ForcesAndSourcesCore *child_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
	User calls this function to loop over parent elements. This function calls finite element with its operator to do calculations.

MoFEMErrorCode	loopRange (const string &fe_name, ForcesAndSourcesCore *range_fe, boost::shared_ptr< Range > fe_range, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
	Iterate over range of elements.

Public Member Functions inherited from MoFEM::DataOperator
	DataOperator (const bool symm=true)

virtual	~DataOperator ()=default

virtual MoFEMErrorCode	opLhs (EntitiesFieldData &row_data, EntitiesFieldData &col_data)

virtual MoFEMErrorCode	opRhs (EntitiesFieldData &data, const bool error_if_no_base=false)

bool	getSymm () const
	Get if operator uses symmetry of DOFs or not.

void	setSymm ()
	set if operator is executed taking in account symmetry

void	unSetSymm ()
	unset if operator is executed for non symmetric problem

Private Attributes
const double	alphaU

PetscBool	polyConvex = PETSC_FALSE

boost::shared_ptr< TopologicalData >	topoDataPtr

SmartPetscObj< Vec >	assembleVec

boost::shared_ptr< double >	JPtr

double	locJ

Additional Inherited Members
Public Types inherited from OpAssembleVolume
using	OP = OpAssembleBasic< VolUserDataOperator >

using	ScaleOff = typename OP::ScaleOff

Public Types inherited from OpAssembleBasic< VolUserDataOperator >
using	ScaleOff = boost::function< double()>

Public Types inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
enum	OpType { OPROW = 1 << 0 , OPCOL = 1 << 1 , OPROWCOL = 1 << 2 , OPSPACE = 1 << 3 , OPLAST = 1 << 3 }
	Controls loop over entities on element. More...

using	AdjCache = std::map< EntityHandle, std::vector< boost::weak_ptr< NumeredEntFiniteElement > > >

Public Types inherited from MoFEM::DataOperator
using	DoWorkLhsHookFunType = boost::function< MoFEMErrorCode(DataOperator *op_ptr, int row_side, int col_side, EntityType row_type, EntityType col_type, EntitiesFieldData::EntData &row_data, EntitiesFieldData::EntData &col_data)>

using	DoWorkRhsHookFunType = boost::function< MoFEMErrorCode(DataOperator *op_ptr, int side, EntityType type, EntitiesFieldData::EntData &data)>

Public Attributes inherited from OpAssembleBasic< VolUserDataOperator >
const bool	assembleSymmetry

boost::shared_ptr< DataAtIntegrationPts >	dataAtPts
	data at integration pts

VectorDouble	nF
	local right hand side vector

MatrixDouble	K
	local tangent matrix

MatrixDouble	transposeK

ScaleOff	scaleOff

Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
char	opType

std::string	rowFieldName

std::string	colFieldName

FieldSpace	sPace

Public Attributes inherited from MoFEM::DataOperator
DoWorkLhsHookFunType	doWorkLhsHook

DoWorkRhsHookFunType	doWorkRhsHook

bool	sYmm
	If true assume that matrix is symmetric structure.

std::array< bool, MBMAXTYPE >	doEntities
	If true operator is executed for entity.

bool &	doVertices
	\deprectaed If false skip vertices

bool &	doEdges
	\deprectaed If false skip edges

bool &	doQuads
	\deprectaed

bool &	doTris
	\deprectaed

bool &	doTets
	\deprectaed

bool &	doPrisms
	\deprectaed

Static Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
static const char *const	OpTypeNames []

Protected Member Functions inherited from MoFEM::VolumeElementForcesAndSourcesCore::UserDataOperator
MoFEMErrorCode	setPtrFE (ForcesAndSourcesCore *ptr)

Protected Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
ForcesAndSourcesCore *	ptrFE

Static Protected Attributes inherited from OpAssembleVolume
static std::map< std::pair< std::string, std::string >, MatrixDouble >	mapMatrix

Detailed Description

Definition at line 585 of file HMHHencky.cpp.

Constructor & Destructor Documentation

◆ OpTopoSpatialPhysical()

EshelbianPlasticity::HMHHencky::OpTopoSpatialPhysical::OpTopoSpatialPhysical	(	const std::string &	field_name,
		boost::shared_ptr< DataAtIntegrationPts >	data_ptr,
		SmartPetscObj< Vec >	assemble_vec,
		boost::shared_ptr< TopologicalData >	topo_ptr,
		const double	alpha_u,
		boost::shared_ptr< double >	J_ptr
	)

Definition at line 1506 of file HMHHencky.cpp.

    : OpAssembleVolume(field_name, data_ptr, OPROW), alphaU(alpha_u),
      JPtr(J_ptr), topoDataPtr(topo_ptr), assembleVec(assemble_vec) {
 
  CHK_MOAB_THROW(PetscOptionsGetBool(PETSC_NULLPTR, "", "-poly_convex",
                                     &polyConvex, PETSC_NULLPTR),
                 "get polyconvex option failed");
}

Member Function Documentation

◆ assemble()

MoFEMErrorCode EshelbianPlasticity::HMHHencky::OpTopoSpatialPhysical::assemble	(	int	row_side,
		EntityType	row_type,
		EntData &	data
	)

override

Definition at line 1649 of file HMHHencky.cpp.

                                                                         {
  MoFEMFunctionBegin;
  if (assembleVec) {
    double *vec_ptr = nF.data().data();
    const int nb_dofs = data.getIndices().size();
    int *ind_ptr = data.getIndices().data().data();
    CHKERR VecSetValues(assembleVec, nb_dofs, ind_ptr, vec_ptr, ADD_VALUES);
  }
  if (row_type == MBVERTEX) {
    if (JPtr) {
      *JPtr += locJ;
    }
  }
  MoFEMFunctionReturn(0);
}

◆ integrate()

MoFEMErrorCode EshelbianPlasticity::HMHHencky::OpTopoSpatialPhysical::integrate ( EntData & data )

Definition at line 1520 of file HMHHencky.cpp.

                                                                      {
  MoFEMFunctionBegin;
  if (polyConvex) {
    CHKERR integratePolyconvexHencky(data);
  } else {
    CHKERR integrateHencky(data);
  }
  MoFEMFunctionReturn(0);
}

◆ integrateHencky()

MoFEMErrorCode EshelbianPlasticity::HMHHencky::OpTopoSpatialPhysical::integrateHencky ( EntData & data )

Definition at line 1531 of file HMHHencky.cpp.

                                                             {
  MoFEMFunctionBegin;
 
  FTensor::Index<'L', size_symm> L;
  auto t_L = symm_L_tensor();
 
  int nb_dofs = data.getIndices().size();
  int nb_integration_pts = data.getN().size1();
  auto v = getVolume();
 
  FTENSOR_INDEXES(SPACE_DIM, i, j, k, l, I, J);
 
  auto get_ftensor1 = [](auto &v) {
    return FTensor::Tensor1<FTensor::PackPtr<double *, SPACE_DIM>, SPACE_DIM>(
        &v[0], &v[1], &v[2]);
  };
 
  locJ = 0;
  int nb_base_functions = data.getN().size2();
 
  auto integrate = [&](auto t_D) {
    MoFEMFunctionBegin;
 
    auto t_w = getFTensor0IntegrationWeight();
    auto t_det = topoDataPtr->getFTensorDetJacobian(nb_integration_pts);
    auto t_inv_jac = topoDataPtr->getFTensorInvJacobian(nb_integration_pts);
 
    auto t_var_log_u = dataAtPts->getFTensorVarLogStreach(nb_integration_pts);
    auto t_approx_P = dataAtPts->getFTensorApproxP(nb_integration_pts);
    auto t_approx_P_adjoint_log_du =
        dataAtPts->getFTensorAdjointPdU(nb_integration_pts);
    auto t_h_dlog_u =
        dataAtPts->getFTensorSmallHdLogStretch(nb_integration_pts);
    auto t_log_stretch_h1 =
        dataAtPts->getFTensorLogStretchTotal(nb_integration_pts);
 
    // Swithc off rate effects for now, as we don't have the dot_log_u at the
    // pts; we would need to compute it from the solution, which is not
    // straightforward
    // auto t_dot_log_u =
    // dataAtPts->getFTensorLogStretchDot(nb_integration_pts);
 
    auto t_diff_base = data.getFTensor1DiffN<SPACE_DIM>();
    for (int gg = 0; gg != nb_integration_pts; ++gg) {
      const double a = v * t_w;
 
      FTensor::Tensor2_symmetric<double, SPACE_DIM> t_T;
      t_T(i, j) = t_D(i, j, k, l) *
                  (t_log_stretch_h1(k, l) /*+ alphaU * t_dot_log_u(k, l)*/);
 
      FTensor::Tensor1<double, size_symm> t_stress_residual;
      t_stress_residual(L) = t_L(i, j, L) * t_T(i, j);
 
      FTensor::Tensor1<double, size_symm> t_residual;
      t_residual(L) = t_approx_P_adjoint_log_du(L) - t_stress_residual(L);
 
      locJ -= (a * t_det) * t_residual(L) * t_var_log_u(L);
 
      FTensor::Tensor2<double, SPACE_DIM, SPACE_DIM> t_cof;
      t_cof(I, J) = t_det * t_inv_jac(J, I);
 
      const double var_stress_residual = t_var_log_u(L) * t_stress_residual(L);
 
      // detJ cancels the 1 / detJ from the Piola transform; the remaining
      // derivative is from J(k, n) * P(i, n).
      FTensor::Tensor3<double, size_symm, SPACE_DIM, SPACE_DIM>
          t_approx_P_adjoint_log_du_dX;
      t_approx_P_adjoint_log_du_dX(L, I, J) =
          t_h_dlog_u(i, I, L) * t_approx_P(i, J);
 
      FTensor::Tensor2<double, SPACE_DIM, SPACE_DIM> t_residual_dX;
      t_residual_dX(I, J) =
          t_var_log_u(L) * t_approx_P_adjoint_log_du_dX(L, I, J) -
          var_stress_residual * t_cof(I, J);
 
      auto t_nf = get_ftensor1(nF);
      int bb = 0;
      for (; bb != nb_dofs / SPACE_DIM; ++bb) {
        t_nf(i) -= a * t_residual_dX(i, j) * t_diff_base(j);
        ++t_nf;
        ++t_diff_base;
      }
      for (; bb != nb_base_functions; ++bb)
        ++t_diff_base;
 
      ++t_w;
      ++t_det;
      ++t_inv_jac;
      ++t_var_log_u;
      ++t_approx_P;
      ++t_approx_P_adjoint_log_du;
      ++t_h_dlog_u;
      ++t_log_stretch_h1;
      // ++t_dot_log_u;
      ++t_D;
    }
    MoFEMFunctionReturn(0);
  };
 
  if (!EshelbianCore::hasNonHomogeneousMaterialBlock) {
    CHKERR integrate(
        getFTensor4DdgFromMat<SPACE_DIM, SPACE_DIM, 0>(dataAtPts->matD));
  } else {
    CHKERR integrate(
        getFTensor4DdgFromMat<SPACE_DIM, SPACE_DIM>(dataAtPts->matD));
  }
 
  MoFEMFunctionReturn(0);
}

◆ integratePolyconvexHencky()

MoFEMErrorCode EshelbianPlasticity::HMHHencky::OpTopoSpatialPhysical::integratePolyconvexHencky ( EntData & data )

Definition at line 1642 of file HMHHencky.cpp.

                                                                       {
  MoFEMFunctionBegin;
  SETERRQ(PETSC_COMM_SELF, MOFEM_NOT_IMPLEMENTED,
          "Polyconvex Hencky is not implemented yet");
  MoFEMFunctionReturn(0);
}

Member Data Documentation

◆ alphaU

const double EshelbianPlasticity::HMHHencky::OpTopoSpatialPhysical::alphaU

private

Definition at line 604 of file HMHHencky.cpp.

◆ assembleVec

SmartPetscObj<Vec> EshelbianPlasticity::HMHHencky::OpTopoSpatialPhysical::assembleVec

private

Definition at line 607 of file HMHHencky.cpp.

◆ JPtr

boost::shared_ptr<double> EshelbianPlasticity::HMHHencky::OpTopoSpatialPhysical::JPtr

private

Definition at line 608 of file HMHHencky.cpp.

◆ locJ

double EshelbianPlasticity::HMHHencky::OpTopoSpatialPhysical::locJ

private

Definition at line 609 of file HMHHencky.cpp.

◆ polyConvex

PetscBool EshelbianPlasticity::HMHHencky::OpTopoSpatialPhysical::polyConvex = PETSC_FALSE

private

Definition at line 605 of file HMHHencky.cpp.

◆ topoDataPtr

boost::shared_ptr<TopologicalData> EshelbianPlasticity::HMHHencky::OpTopoSpatialPhysical::topoDataPtr

private

Definition at line 606 of file HMHHencky.cpp.

The documentation for this struct was generated from the following file:

users_modules/eshelbian_plasticity/src/impl/HMHHencky.cpp

Public Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ OpTopoSpatialPhysical()

Member Function Documentation

◆ assemble()

◆ integrate()

◆ integrateHencky()

◆ integratePolyconvexHencky()

Member Data Documentation

◆ alphaU

◆ assembleVec

◆ JPtr

◆ locJ

◆ polyConvex

◆ topoDataPtr