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Public Member Functions | Private Attributes | List of all members
EshelbianPlasticity::MatPhysicalEquations::OpSpatialPhysical_du_du Struct Reference
Inheritance diagram for EshelbianPlasticity::MatPhysicalEquations::OpSpatialPhysical_du_du:
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Collaboration diagram for EshelbianPlasticity::MatPhysicalEquations::OpSpatialPhysical_du_du:
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Public Member Functions

 OpSpatialPhysical_du_du (std::string row_field, std::string col_field, boost::shared_ptr< MatOps::PhysicalEquations > physics_ptr, const double alpha, const double alpha_grad_u)
 
MoFEMErrorCode integrate (EntData &row_data, EntData &col_data)
 
- Public Member Functions inherited from OpAssembleVolume
MoFEMErrorCode assemble (int row_side, int col_side, EntityType row_type, EntityType col_type, EntData &row_data, EntData &col_data)
 
- Public Member Functions inherited from OpAssembleBasic< VolUserDataOperator >
 OpAssembleBasic (const std::string &field_name, boost::shared_ptr< DataAtIntegrationPts > data_ptr, const char type)
 
 OpAssembleBasic (std::string row_field, std::string col_field, boost::shared_ptr< DataAtIntegrationPts > data_ptr, const char type, const bool assemble_symmetry, ScaleOff scale_off=[]() { return 1;})
 
 OpAssembleBasic (const FieldSpace space)
 
virtual MoFEMErrorCode integrate (EntData &)
 
virtual MoFEMErrorCode integrate (int, EntityType, EntData &data)
 
virtual MoFEMErrorCode integrate (EntData &, EntData &)
 
virtual MoFEMErrorCode assemble (EntData &data)
 
virtual MoFEMErrorCode assemble (int, EntityType, EntData &data)
 
MoFEMErrorCode doWork (int side, EntityType type, EntData &data)
 
MoFEMErrorCode doWork (int row_side, int col_side, EntityType row_type, EntityType col_type, EntData &row_data, EntData &col_data)
 
- Public Member Functions inherited from MoFEM::VolumeElementForcesAndSourcesCore::UserDataOperator
int getNumNodes ()
 get element number of nodes
 
const EntityHandlegetConn ()
 get element connectivity
 
double getVolume () const
 element volume (linear geometry)
 
doublegetVolume ()
 element volume (linear geometry)
 
FTensor::Tensor2< double *, 3, 3 > & getJac ()
 get element Jacobian
 
FTensor::Tensor2< double *, 3, 3 > & getInvJac ()
 get element inverse Jacobian
 
VectorDoublegetCoords ()
 nodal coordinates
 
VolumeElementForcesAndSourcesCoregetVolumeFE () const
 return pointer to Generic Volume Finite Element object
 
- Public Member Functions inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
 UserDataOperator (const FieldSpace space, const char type=OPSPACE, const bool symm=true)
 Constructor for operators working on finite element spaces.
 
 UserDataOperator (const std::string field_name, const char type, const bool symm=true)
 Constructor for operators working on a single field.
 
 UserDataOperator (const std::string row_field_name, const std::string col_field_name, const char type, const bool symm=true)
 Constructor for operators working on two fields (bilinear forms)
 
boost::shared_ptr< const NumeredEntFiniteElementgetNumeredEntFiniteElementPtr () const
 Return raw pointer to NumeredEntFiniteElement.
 
EntityHandle getFEEntityHandle () const
 Return finite element entity handle.
 
int getFEDim () const
 Get dimension of finite element.
 
EntityType getFEType () const
 Get dimension of finite element.
 
boost::weak_ptr< SideNumbergetSideNumberPtr (const int side_number, const EntityType type)
 Get the side number pointer.
 
EntityHandle getSideEntity (const int side_number, const EntityType type)
 Get the side entity.
 
int getNumberOfNodesOnElement () const
 Get the number of nodes on finite element.
 
MoFEMErrorCode getProblemRowIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 Get row indices.
 
MoFEMErrorCode getProblemColIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 Get col indices.
 
const FEMethodgetFEMethod () const
 Return raw pointer to Finite Element Method object.
 
int getOpType () const
 Get operator types.
 
void setOpType (const OpType type)
 Set operator type.
 
void addOpType (const OpType type)
 Add operator type.
 
int getNinTheLoop () const
 get number of finite element in the loop
 
int getLoopSize () const
 get size of elements in the loop
 
std::string getFEName () const
 Get name of the element.
 
ForcesAndSourcesCoregetPtrFE () const
 
ForcesAndSourcesCoregetSidePtrFE () const
 
ForcesAndSourcesCoregetRefinePtrFE () const
 
const PetscData::SwitchesgetDataCtx () const
 
KspMethod::KSPContext getKSPCtx () const
 
SnesMethod::SNESContext getSNESCtx () const
 
TSMethod::TSContext getTSCtx () const
 
Vec getKSPf () const
 
Mat getKSPA () const
 
Mat getKSPB () const
 
Vec getSNESf () const
 
Vec getSNESx () const
 
Mat getSNESA () const
 
Mat getSNESB () const
 
Vec getTSu () const
 
Vec getTSu_t () const
 
Vec getTSu_tt () const
 
Vec getTSf () const
 
Mat getTSA () const
 
Mat getTSB () const
 
int getTSstep () const
 
double getTStime () const
 
double getTStimeStep () const
 
double getTSa () const
 
double getTSaa () const
 
MatrixDoublegetGaussPts ()
 matrix of integration (Gauss) points for Volume Element
 
auto getFTensor0IntegrationWeight ()
 Get integration weights.
 
MatrixDoublegetCoordsAtGaussPts ()
 Gauss points and weight, matrix (nb. of points x 3)
 
auto getFTensor1CoordsAtGaussPts ()
 Get coordinates at integration points assuming linear geometry.
 
double getMeasure () const
 get measure of element
 
doublegetMeasure ()
 get measure of element
 
MoFEM::InterfacegetMField ()
 
moab::Interface & getMoab ()
 
virtual boost::weak_ptr< ForcesAndSourcesCoregetSubPipelinePtr () const
 
MoFEMErrorCode loopSide (const string &fe_name, ForcesAndSourcesCore *side_fe, const size_t dim, const EntityHandle ent_for_side=0, boost::shared_ptr< Range > fe_range=nullptr, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy, AdjCache *adj_cache=nullptr)
 User calls this function to loop over elements on the side of face. This function calls finite element with its operator to do calculations.
 
MoFEMErrorCode loopThis (const string &fe_name, ForcesAndSourcesCore *this_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User calls this function to loop over the same element using a different set of integration points. This function calls finite element with its operator to do calculations.
 
MoFEMErrorCode loopParent (const string &fe_name, ForcesAndSourcesCore *parent_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User calls this function to loop over parent elements. This function calls finite element with its operator to do calculations.
 
MoFEMErrorCode loopChildren (const string &fe_name, ForcesAndSourcesCore *child_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User calls this function to loop over parent elements. This function calls finite element with its operator to do calculations.
 
MoFEMErrorCode loopRange (const string &fe_name, ForcesAndSourcesCore *range_fe, boost::shared_ptr< Range > fe_range, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 Iterate over range of elements.
 
- Public Member Functions inherited from MoFEM::DataOperator
 DataOperator (const bool symm=true)
 
virtual ~DataOperator ()=default
 
virtual MoFEMErrorCode opLhs (EntitiesFieldData &row_data, EntitiesFieldData &col_data)
 
virtual MoFEMErrorCode opRhs (EntitiesFieldData &data, const bool error_if_no_base=false)
 
bool getSymm () const
 Get if operator uses symmetry of DOFs or not.
 
void setSymm ()
 set if operator is executed taking in account symmetry
 
void unSetSymm ()
 unset if operator is executed for non symmetric problem
 

Private Attributes

const double alphaU
 
const double alphaGradU
 
boost::shared_ptr< MatOps::PhysicalEquationsphysicsPtr
 material physical equations
 

Additional Inherited Members

- Public Types inherited from OpAssembleVolume
using OP = OpAssembleBasic< VolUserDataOperator >
 
using ScaleOff = typename OP::ScaleOff
 
- Public Types inherited from OpAssembleBasic< VolUserDataOperator >
using ScaleOff = boost::function< double()>
 
- Public Types inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
enum  OpType {
  OPROW = 1 << 0 , OPCOL = 1 << 1 , OPROWCOL = 1 << 2 , OPSPACE = 1 << 3 ,
  OPLAST = 1 << 3
}
 Controls loop over entities on element. More...
 
using AdjCache = std::map< EntityHandle, std::vector< boost::weak_ptr< NumeredEntFiniteElement > > >
 
- Public Types inherited from MoFEM::DataOperator
using DoWorkLhsHookFunType = boost::function< MoFEMErrorCode(DataOperator *op_ptr, int row_side, int col_side, EntityType row_type, EntityType col_type, EntitiesFieldData::EntData &row_data, EntitiesFieldData::EntData &col_data)>
 
using DoWorkRhsHookFunType = boost::function< MoFEMErrorCode(DataOperator *op_ptr, int side, EntityType type, EntitiesFieldData::EntData &data)>
 
- Public Attributes inherited from OpAssembleBasic< VolUserDataOperator >
const bool assembleSymmetry
 
boost::shared_ptr< DataAtIntegrationPtsdataAtPts
 data at integration pts
 
VectorDouble nF
 local right hand side vector
 
MatrixDouble K
 local tangent matrix
 
MatrixDouble transposeK
 
ScaleOff scaleOff
 
- Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
char opType
 
std::string rowFieldName
 
std::string colFieldName
 
FieldSpace sPace
 
- Public Attributes inherited from MoFEM::DataOperator
DoWorkLhsHookFunType doWorkLhsHook
 
DoWorkRhsHookFunType doWorkRhsHook
 
bool sYmm
 If true assume that matrix is symmetric structure.
 
std::array< bool, MBMAXTYPE > doEntities
 If true operator is executed for entity.
 
booldoVertices
 \deprectaed If false skip vertices
 
booldoEdges
 \deprectaed If false skip edges
 
booldoQuads
 \deprectaed
 
booldoTris
 \deprectaed
 
booldoTets
 \deprectaed
 
booldoPrisms
 \deprectaed
 
- Static Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
static const char *const OpTypeNames []
 
- Protected Member Functions inherited from MoFEM::VolumeElementForcesAndSourcesCore::UserDataOperator
MoFEMErrorCode setPtrFE (ForcesAndSourcesCore *ptr)
 
- Protected Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
ForcesAndSourcesCoreptrFE
 
- Static Protected Attributes inherited from OpAssembleVolume
static std::map< std::pair< std::string, std::string >, MatrixDouble > mapMatrix
 

Detailed Description

Definition at line 103 of file EshelbianMatCore.cpp.

Constructor & Destructor Documentation

◆ OpSpatialPhysical_du_du()

EshelbianPlasticity::MatPhysicalEquations::OpSpatialPhysical_du_du::OpSpatialPhysical_du_du ( std::string  row_field,
std::string  col_field,
boost::shared_ptr< MatOps::PhysicalEquations physics_ptr,
const double  alpha,
const double  alpha_grad_u 
)
inline

Definition at line 104 of file EshelbianMatCore.cpp.

108 : OpAssembleVolume(row_field, col_field, nullptr, OPROWCOL, false),
109 alphaU(alpha), alphaGradU(alpha_grad_u), physicsPtr(physics_ptr) {
110 sYmm = false;
111 }
boost::shared_ptr< MatOps::PhysicalEquations > physicsPtr
material physical equations
bool sYmm
If true assume that matrix is symmetric structure.
@ OPROWCOL
operator doWork is executed on FE rows &columns

Member Function Documentation

◆ integrate()

MoFEMErrorCode EshelbianPlasticity::MatPhysicalEquations::OpSpatialPhysical_du_du::integrate ( EntData row_data,
EntData col_data 
)

Definition at line 204 of file EshelbianMatCore.cpp.

205 {
207
211 auto t_diff = FTensor::DiffTensor<double>();
212 constexpr auto t_kd_sym = FTensor::Kronecker_Delta_symmetric<int>();
213
214 int nb_integration_pts = row_data.getN().size1();
215 int row_nb_dofs = row_data.getIndices().size();
216 int col_nb_dofs = col_data.getIndices().size();
217
218 auto get_ftensor2 = [](MatrixDouble &m, const int r, const int c) {
220 size_symm>(
221
222 &m(r + 0, c + 0), &m(r + 0, c + 1), &m(r + 0, c + 2), &m(r + 0, c + 3),
223 &m(r + 0, c + 4), &m(r + 0, c + 5),
224
225 &m(r + 1, c + 0), &m(r + 1, c + 1), &m(r + 1, c + 2), &m(r + 1, c + 3),
226 &m(r + 1, c + 4), &m(r + 1, c + 5),
227
228 &m(r + 2, c + 0), &m(r + 2, c + 1), &m(r + 2, c + 2), &m(r + 2, c + 3),
229 &m(r + 2, c + 4), &m(r + 2, c + 5),
230
231 &m(r + 3, c + 0), &m(r + 3, c + 1), &m(r + 3, c + 2), &m(r + 3, c + 3),
232 &m(r + 3, c + 4), &m(r + 3, c + 5),
233
234 &m(r + 4, c + 0), &m(r + 4, c + 1), &m(r + 4, c + 2), &m(r + 4, c + 3),
235 &m(r + 4, c + 4), &m(r + 4, c + 5),
236
237 &m(r + 5, c + 0), &m(r + 5, c + 1), &m(r + 5, c + 2), &m(r + 5, c + 3),
238 &m(r + 5, c + 4), &m(r + 5, c + 5)
239
240 );
241 };
242
243 FTENSOR_INDEX(3, i);
244 FTENSOR_INDEX(3, j);
245 FTENSOR_INDEX(3, k);
246 FTENSOR_INDEX(3, l);
247 FTENSOR_INDEX(3, m);
248 FTENSOR_INDEX(3, n);
249
250 MatrixDouble dP;
251
252 auto get_dP = [&]() {
253 auto get_tensor_for_dP =
254 MatrixSizeHelper<GetFTensor2FromMatType<size_symm, size_symm, -1, DL>,
255 DL>::size(dP, nb_integration_pts);
256
257 auto mat_ops_data = physicsPtr->matOpsDataPtr;
258
259 auto t_P = getFTensor2FromMat<3, 3, -1, DL>(
260 mat_ops_data->getCommonDataPtr("PAtPts"));
261 auto t_P_du = getFTensor4FromMat<3, 3, 3, 3, -1, DL>(
262 mat_ops_data->getCommonDataPtr("PAtPts_du"));
263 auto t_approx_P_adjoint_dstretch = getFTensor2FromMat<3, 3, -1, DL>(
264 mat_ops_data->getCommonDataPtr("adjointPdstretchAtPts"));
265 auto t_u = getFTensor2FromMat<3, 3, -1, DL>(
266 mat_ops_data->getCommonDataPtr("stretchH1AtPts"));
267 auto t_diff_u = getFTensor4FromMat<3, 3, 3, 3, -1, DL>(
268 mat_ops_data->getCommonDataPtr("diffStretchH1AtPts"));
269 auto t_grad_h1 = getFTensor2FromMat<3, 3, -1, DL>(
270 mat_ops_data->getCommonDataPtr("wGradH1AtPts"));
271 auto t_eigen_vals = getFTensor1FromMat<3, -1, DL>(
272 mat_ops_data->getCommonDataPtr("eigenVals"));
273 auto t_eigen_vecs = getFTensor2FromMat<3, 3, -1, DL>(
274 mat_ops_data->getCommonDataPtr("eigenVecs"));
275
276 auto ts_a = getTSa();
278
279 auto t_dP = get_tensor_for_dP();
280 for (auto gg = 0; gg != nb_integration_pts; ++gg) {
281
283
285 case LARGE_ROT:
286 case MODERATE_ROT:
287 t_h1(i, j) = t_grad_h1(i, j) + t_kd(i, j);
288 break;
289 default:
290 t_h1(i, j) = t_kd(i, j);
291 }
292
294 t_Ldiff_u(i, j, L) = t_diff_u(i, j, m, n) * t_L(m, n, L);
295 t_dP(L, J) =
296 -t_Ldiff_u(i, j, L) * (t_P_du(i, j, k, l) * t_Ldiff_u(k, l, J));
297 t_dP(L, J) += (ts_a * alphaU) *
298 (t_L(i, j, L) * (t_diff(i, j, k, l) * t_L(k, l, J)));
299
303 t_deltaP(i, j) =
304 t_approx_P_adjoint_dstretch(i, j) - t_P(i, k) * t_h1(j, k);
306 t_deltaP_sym(i, j) = (t_deltaP(i, j) || t_deltaP(j, i));
307 t_deltaP_sym(i, j) /= 2.0;
308 auto nb_uniq =
309 getUniqNb<3>(getVectorAdaptor(&t_eigen_vals(0), 3),
311 auto t_diff2_uP2 = EigenMatrix::getDiffDiffMat(
312 t_eigen_vals, t_eigen_vecs, EshelbianCore::f, EshelbianCore::d_f,
313 EshelbianCore::dd_f, t_deltaP_sym, nb_uniq);
314 t_dP(L, J) += t_L(i, j, L) * (t_diff2_uP2(i, j, k, l) * t_L(k, l, J));
315 }
316
317 ++t_P;
318 ++t_dP;
319 ++t_P_du;
320 ++t_approx_P_adjoint_dstretch;
321 ++t_u;
322 ++t_diff_u;
323 ++t_grad_h1;
324 ++t_eigen_vals;
325 ++t_eigen_vecs;
326 }
327
328 return get_tensor_for_dP();
329 };
330
331 int row_nb_base_functions = row_data.getN().size2();
332 auto t_row_base_fun = row_data.getFTensor0N();
333 auto t_row_grad_fun = row_data.getFTensor1DiffN<3>();
334
335 auto t_dP = get_dP();
336 auto v = getVolume();
337 auto ts_a = getTSa();
338 auto t_w = getFTensor0IntegrationWeight();
339
340 for (int gg = 0; gg != nb_integration_pts; ++gg) {
341 double a = v * t_w;
342
343 int rr = 0;
344 for (; rr != row_nb_dofs / size_symm; ++rr) {
345 auto t_col_base_fun = col_data.getFTensor0N(gg, 0);
346 auto t_col_grad_fun = col_data.getFTensor1DiffN<3>(gg, 0);
347 auto t_m = get_ftensor2(K, size_symm * rr, 0);
348 for (int cc = 0; cc != col_nb_dofs / size_symm; ++cc) {
349 const double b = a * t_row_base_fun * t_col_base_fun;
350 t_m(L, J) -= b * t_dP(L, J);
351 const double c = (a * alphaGradU * ts_a) *
352 (t_row_grad_fun(i) * t_col_grad_fun(i));
353 t_m(L, J) += c * t_kd_sym(L, J);
354 ++t_m;
355 ++t_col_base_fun;
356 ++t_col_grad_fun;
357 }
358 ++t_row_base_fun;
359 ++t_row_grad_fun;
360 }
361
362 for (; rr != row_nb_base_functions; ++rr) {
363 ++t_row_base_fun;
364 ++t_row_grad_fun;
365 }
366
367 ++t_w;
368 ++t_dP;
369 }
371}
#define FTENSOR_INDEX(DIM, I)
constexpr double a
Fourth-order differential tensor symmetric in both index pairs.
Kronecker Delta class symmetric.
Kronecker Delta class.
Mapping from symmetric tensor indices to packed storage index.
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
constexpr auto t_kd
FTensor::Index< 'i', SPACE_DIM > i
const double c
speed of light (cm/ns)
const double v
phase velocity of light in medium (cm/ns)
const double n
refractive index of diffusive medium
FTensor::Index< 'J', DIM1 > J
Definition level_set.cpp:30
FTensor::Index< 'l', 3 > l
FTensor::Index< 'j', 3 > j
FTensor::Index< 'k', 3 > k
auto getDiffDiffMat(A &&t_val, B &&t_vec, Fun< double > f, Fun< double > d_f, Fun< double > dd_f, C &&t_S, const int nb)
Get the Diff Diff Mat object.
DataLayoutTraits< DataLayout::GaussByCoeffs > DL
static constexpr auto size_symm
UBlasMatrix< double > MatrixDouble
Definition Types.hpp:77
auto getVectorAdaptor(T1 ptr, const size_t n)
Get Vector adaptor.
Definition Templates.hpp:49
auto getFTensor2FromMat(M &data)
Get tensor rank 2 (matrix) form data matrix.
auto getFTensor1FromMat(M &data, int rr=0, int cc=0)
Get tensor rank 1 (vector) form data matrix.
decltype(GetFTensor2FromMatImpl< Tensor_Dim0, Tensor_Dim1, S, DL, M >::get(std::declval< M & >(), 0, 0)) GetFTensor2FromMatType
int r
Definition sdf.py:205
FTensor::Index< 'm', 3 > m
static enum StretchSelector stretchSelector
static enum RotSelector gradApproximator
static boost::function< double(const double)> f
static boost::function< double(const double)> dd_f
static boost::function< double(const double)> d_f
FTensor::Tensor0< FTensor::PackPtr< double *, 1 > > getFTensor0N(const FieldApproximationBase base)
Get base function as Tensor0.
auto getFTensor1DiffN(const FieldApproximationBase base)
Get derivatives of base functions.
MatrixDouble & getN(const FieldApproximationBase base)
get base functions this return matrix (nb. of rows is equal to nb. of Gauss pts, nb....
const VectorInt & getIndices() const
Get global indices of degrees of freedom on entity.
auto getFTensor0IntegrationWeight()
Get integration weights.
MatrixDouble K
local tangent matrix

Member Data Documentation

◆ alphaGradU

const double EshelbianPlasticity::MatPhysicalEquations::OpSpatialPhysical_du_du::alphaGradU
private

Definition at line 117 of file EshelbianMatCore.cpp.

◆ alphaU

const double EshelbianPlasticity::MatPhysicalEquations::OpSpatialPhysical_du_du::alphaU
private

Definition at line 116 of file EshelbianMatCore.cpp.

◆ physicsPtr

boost::shared_ptr<MatOps::PhysicalEquations> EshelbianPlasticity::MatPhysicalEquations::OpSpatialPhysical_du_du::physicsPtr
private

material physical equations

Definition at line 119 of file EshelbianMatCore.cpp.


The documentation for this struct was generated from the following file: