v0.15.0
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EshelbianPlasticity::OpSpatialPhysical_du_du Struct Reference
Inheritance diagram for EshelbianPlasticity::OpSpatialPhysical_du_du:
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Collaboration diagram for EshelbianPlasticity::OpSpatialPhysical_du_du:
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Public Member Functions

 OpSpatialPhysical_du_du (std::string row_field, std::string col_field, boost::shared_ptr< DataAtIntegrationPts > data_ptr, const double alpha)
 
MoFEMErrorCode integrate (EntData &row_data, EntData &col_data)
 
MoFEMErrorCode integratePiola (EntData &row_data, EntData &col_data)
 
- Public Member Functions inherited from EshelbianPlasticity::OpAssembleVolume
MoFEMErrorCode assemble (int row_side, int col_side, EntityType row_type, EntityType col_type, EntData &row_data, EntData &col_data)
 
- Public Member Functions inherited from EshelbianPlasticity::OpAssembleBasic< VolUserDataOperator >
 OpAssembleBasic (const std::string &field_name, boost::shared_ptr< DataAtIntegrationPts > data_ptr, const char type)
 
 OpAssembleBasic (std::string row_field, std::string col_field, boost::shared_ptr< DataAtIntegrationPts > data_ptr, const char type, const bool assemble_symmetry, ScaleOff scale_off=[]() { return 1;})
 
 OpAssembleBasic (const FieldSpace space)
 
virtual MoFEMErrorCode integrate (EntData &data)
 
virtual MoFEMErrorCode integrate (int row_side, EntityType row_type, EntData &data)
 
virtual MoFEMErrorCode assemble (EntData &data)
 
virtual MoFEMErrorCode assemble (int row_side, EntityType row_type, EntData &data)
 
MoFEMErrorCode doWork (int side, EntityType type, EntData &data)
 
MoFEMErrorCode doWork (int row_side, int col_side, EntityType row_type, EntityType col_type, EntData &row_data, EntData &col_data)
 
- Public Member Functions inherited from MoFEM::VolumeElementForcesAndSourcesCore::UserDataOperator
int getNumNodes ()
 get element number of nodes
 
const EntityHandlegetConn ()
 get element connectivity
 
double getVolume () const
 element volume (linear geometry)
 
doublegetVolume ()
 element volume (linear geometry)
 
FTensor::Tensor2< double *, 3, 3 > & getJac ()
 get element Jacobian
 
FTensor::Tensor2< double *, 3, 3 > & getInvJac ()
 get element inverse Jacobian
 
VectorDoublegetCoords ()
 nodal coordinates
 
VolumeElementForcesAndSourcesCoregetVolumeFE () const
 return pointer to Generic Volume Finite Element object
 
- Public Member Functions inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
 UserDataOperator (const FieldSpace space, const char type=OPSPACE, const bool symm=true)
 
 UserDataOperator (const std::string field_name, const char type, const bool symm=true)
 
 UserDataOperator (const std::string row_field_name, const std::string col_field_name, const char type, const bool symm=true)
 
boost::shared_ptr< const NumeredEntFiniteElementgetNumeredEntFiniteElementPtr () const
 Return raw pointer to NumeredEntFiniteElement.
 
EntityHandle getFEEntityHandle () const
 Return finite element entity handle.
 
int getFEDim () const
 Get dimension of finite element.
 
EntityType getFEType () const
 Get dimension of finite element.
 
boost::weak_ptr< SideNumbergetSideNumberPtr (const int side_number, const EntityType type)
 Get the side number pointer.
 
EntityHandle getSideEntity (const int side_number, const EntityType type)
 Get the side entity.
 
int getNumberOfNodesOnElement () const
 Get the number of nodes on finite element.
 
MoFEMErrorCode getProblemRowIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 Get row indices.
 
MoFEMErrorCode getProblemColIndices (const std::string filed_name, const EntityType type, const int side, VectorInt &indices) const
 Get col indices.
 
const FEMethodgetFEMethod () const
 Return raw pointer to Finite Element Method object.
 
int getOpType () const
 Get operator types.
 
void setOpType (const OpType type)
 Set operator type.
 
void addOpType (const OpType type)
 Add operator type.
 
int getNinTheLoop () const
 get number of finite element in the loop
 
int getLoopSize () const
 get size of elements in the loop
 
std::string getFEName () const
 Get name of the element.
 
ForcesAndSourcesCoregetPtrFE () const
 
ForcesAndSourcesCoregetSidePtrFE () const
 
ForcesAndSourcesCoregetRefinePtrFE () const
 
const PetscData::SwitchesgetDataCtx () const
 
const KspMethod::KSPContext getKSPCtx () const
 
const SnesMethod::SNESContext getSNESCtx () const
 
const TSMethod::TSContext getTSCtx () const
 
Vec getKSPf () const
 
Mat getKSPA () const
 
Mat getKSPB () const
 
Vec getSNESf () const
 
Vec getSNESx () const
 
Mat getSNESA () const
 
Mat getSNESB () const
 
Vec getTSu () const
 
Vec getTSu_t () const
 
Vec getTSu_tt () const
 
Vec getTSf () const
 
Mat getTSA () const
 
Mat getTSB () const
 
int getTSstep () const
 
double getTStime () const
 
double getTStimeStep () const
 
double getTSa () const
 
double getTSaa () const
 
MatrixDoublegetGaussPts ()
 matrix of integration (Gauss) points for Volume Element
 
auto getFTensor0IntegrationWeight ()
 Get integration weights.
 
MatrixDoublegetCoordsAtGaussPts ()
 Gauss points and weight, matrix (nb. of points x 3)
 
auto getFTensor1CoordsAtGaussPts ()
 Get coordinates at integration points assuming linear geometry.
 
double getMeasure () const
 get measure of element
 
doublegetMeasure ()
 get measure of element
 
MoFEMErrorCode loopSide (const string &fe_name, ForcesAndSourcesCore *side_fe, const size_t dim, const EntityHandle ent_for_side=0, boost::shared_ptr< Range > fe_range=nullptr, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy, AdjCache *adj_cache=nullptr)
 User calls this function to loop over elements on the side of face. This function calls finite element with its operator to do calculations.
 
MoFEMErrorCode loopThis (const string &fe_name, ForcesAndSourcesCore *this_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User calls this function to loop over the same element using a different set of integration points. This function calls finite element with its operator to do calculations.
 
MoFEMErrorCode loopParent (const string &fe_name, ForcesAndSourcesCore *parent_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User calls this function to loop over parent elements. This function calls finite element with its operator to do calculations.
 
MoFEMErrorCode loopChildren (const string &fe_name, ForcesAndSourcesCore *child_fe, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 User calls this function to loop over parent elements. This function calls finite element with its operator to do calculations.
 
MoFEMErrorCode loopRange (const string &fe_name, ForcesAndSourcesCore *range_fe, boost::shared_ptr< Range > fe_range, const int verb=QUIET, const LogManager::SeverityLevel sev=Sev::noisy)
 Iterate over range of elements.
 
- Public Member Functions inherited from MoFEM::DataOperator
 DataOperator (const bool symm=true)
 
virtual ~DataOperator ()=default
 
virtual MoFEMErrorCode opLhs (EntitiesFieldData &row_data, EntitiesFieldData &col_data)
 
virtual MoFEMErrorCode opRhs (EntitiesFieldData &data, const bool error_if_no_base=false)
 
bool getSymm () const
 Get if operator uses symmetry of DOFs or not.
 
void setSymm ()
 set if operator is executed taking in account symmetry
 
void unSetSymm ()
 unset if operator is executed for non symmetric problem
 

Private Attributes

const double alphaU
 
MatrixDouble dP
 

Additional Inherited Members

- Public Types inherited from EshelbianPlasticity::OpAssembleVolume
using OP = OpAssembleBasic<VolUserDataOperator>
 
- Public Types inherited from EshelbianPlasticity::OpAssembleBasic< VolUserDataOperator >
using ScaleOff
 
- Public Types inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
enum  OpType {
  OPROW = 1 << 0 , OPCOL = 1 << 1 , OPROWCOL = 1 << 2 , OPSPACE = 1 << 3 ,
  OPLAST = 1 << 3
}
 Controls loop over entities on element. More...
 
using AdjCache
 
- Public Types inherited from MoFEM::DataOperator
using DoWorkLhsHookFunType
 
using DoWorkRhsHookFunType
 
- Public Attributes inherited from EshelbianPlasticity::OpAssembleBasic< VolUserDataOperator >
const bool assembleSymmetry
 
boost::shared_ptr< DataAtIntegrationPtsdataAtPts
 data at integration pts
 
VectorDouble nF
 local right hand side vector
 
MatrixDouble K
 local tangent matrix
 
MatrixDouble transposeK
 
ScaleOff scaleOff
 
- Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
char opType
 
std::string rowFieldName
 
std::string colFieldName
 
FieldSpace sPace
 
- Public Attributes inherited from MoFEM::DataOperator
DoWorkLhsHookFunType doWorkLhsHook
 
DoWorkRhsHookFunType doWorkRhsHook
 
bool sYmm
 If true assume that matrix is symmetric structure.
 
std::array< bool, MBMAXTYPE > doEntities
 If true operator is executed for entity.
 
booldoVertices
 \deprectaed If false skip vertices
 
booldoEdges
 \deprectaed If false skip edges
 
booldoQuads
 \deprectaed
 
booldoTris
 \deprectaed
 
booldoTets
 \deprectaed
 
booldoPrisms
 \deprectaed
 
- Static Public Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
static const char *const OpTypeNames []
 
- Protected Member Functions inherited from MoFEM::VolumeElementForcesAndSourcesCore::UserDataOperator
MoFEMErrorCode setPtrFE (ForcesAndSourcesCore *ptr)
 
- Protected Member Functions inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
- Protected Attributes inherited from MoFEM::ForcesAndSourcesCore::UserDataOperator
ForcesAndSourcesCoreptrFE
 
- Static Protected Attributes inherited from EshelbianPlasticity::OpAssembleVolume
static std::map< std::pair< std::string, std::string >, MatrixDouble > mapMatrix
 

Detailed Description

Definition at line 113 of file EshelbianADOL-C.cpp.

Constructor & Destructor Documentation

◆ OpSpatialPhysical_du_du()

EshelbianPlasticity::OpSpatialPhysical_du_du::OpSpatialPhysical_du_du ( std::string row_field,
std::string col_field,
boost::shared_ptr< DataAtIntegrationPts > data_ptr,
const double alpha )
inline

Definition at line 114 of file EshelbianADOL-C.cpp.

117 : OpAssembleVolume(row_field, col_field, data_ptr, OPROWCOL, false),
118 alphaU(alpha) {
119 sYmm = false;
120 }
bool sYmm
If true assume that matrix is symmetric structure.
@ OPROWCOL
operator doWork is executed on FE rows &columns

Member Function Documentation

◆ integrate()

MoFEMErrorCode EshelbianPlasticity::OpSpatialPhysical_du_du::integrate ( EntData & row_data,
EntData & col_data )
virtual

Reimplemented from EshelbianPlasticity::OpAssembleBasic< VolUserDataOperator >.

Definition at line 130 of file EshelbianADOL-C.cpp.

131 {
132 return integratePiola(row_data, col_data);
133}
MoFEMErrorCode integratePiola(EntData &row_data, EntData &col_data)

◆ integratePiola()

MoFEMErrorCode EshelbianPlasticity::OpSpatialPhysical_du_du::integratePiola ( EntData & row_data,
EntData & col_data )

Definition at line 135 of file EshelbianADOL-C.cpp.

136 {
138
141 auto t_L = symm_L_tensor();
142 auto t_diff = diff_tensor();
143
144 int nb_integration_pts = row_data.getN().size1();
145 int row_nb_dofs = row_data.getIndices().size();
146 int col_nb_dofs = col_data.getIndices().size();
147
148 auto get_ftensor2 = [](MatrixDouble &m, const int r, const int c) {
150 size_symm>(
151
152 &m(r + 0, c + 0), &m(r + 0, c + 1), &m(r + 0, c + 2), &m(r + 0, c + 3),
153 &m(r + 0, c + 4), &m(r + 0, c + 5),
154
155 &m(r + 1, c + 0), &m(r + 1, c + 1), &m(r + 1, c + 2), &m(r + 1, c + 3),
156 &m(r + 1, c + 4), &m(r + 1, c + 5),
157
158 &m(r + 2, c + 0), &m(r + 2, c + 1), &m(r + 2, c + 2), &m(r + 2, c + 3),
159 &m(r + 2, c + 4), &m(r + 2, c + 5),
160
161 &m(r + 3, c + 0), &m(r + 3, c + 1), &m(r + 3, c + 2), &m(r + 3, c + 3),
162 &m(r + 3, c + 4), &m(r + 3, c + 5),
163
164 &m(r + 4, c + 0), &m(r + 4, c + 1), &m(r + 4, c + 2), &m(r + 4, c + 3),
165 &m(r + 4, c + 4), &m(r + 4, c + 5),
166
167 &m(r + 5, c + 0), &m(r + 5, c + 1), &m(r + 5, c + 2), &m(r + 5, c + 3),
168 &m(r + 5, c + 4), &m(r + 5, c + 5)
169
170 );
171 };
172 FTensor::Index<'i', 3> i;
173 FTensor::Index<'j', 3> j;
174 FTensor::Index<'k', 3> k;
175 FTensor::Index<'l', 3> l;
176 FTensor::Index<'m', 3> m;
177 FTensor::Index<'n', 3> n;
178
179 auto v = getVolume();
180 auto t_w = getFTensor0IntegrationWeight();
181
182 auto get_dP = [&]() {
183 dP.resize(size_symm * size_symm, nb_integration_pts, false);
184 auto ts_a = getTSa();
185
186 auto t_P = getFTensor2FromMat<3, 3>(dataAtPts->PAtPts);
187 auto r_P_du = getFTensor4FromMat<3, 3, 3, 3>(dataAtPts->P_du);
188 auto t_approx_P_adjoint__dstretch =
189 getFTensor2FromMat<3, 3>(dataAtPts->adjointPdstretchAtPts);
190 auto t_dot_log_u =
191 getFTensor2SymmetricFromMat<3>(dataAtPts->logStretchDotTensorAtPts);
192 auto t_u = getFTensor2SymmetricFromMat<3>(dataAtPts->stretchTensorAtPts);
193 auto t_diff_u =
194 getFTensor4DdgFromMat<3, 3, 1>(dataAtPts->diffStretchTensorAtPts);
195 auto t_eigen_vals = getFTensor1FromMat<3>(dataAtPts->eigenVals);
196 auto t_eigen_vecs = getFTensor2FromMat<3, 3>(dataAtPts->eigenVecs);
197 auto &nbUniq = dataAtPts->nbUniq;
198
200 for (auto gg = 0; gg != nb_integration_pts; ++gg) {
201
203 t_deltaP(i, j) = t_approx_P_adjoint__dstretch(i, j) - t_P(i, j);
204
206 t_Ldiff_u(i, j, L) = t_diff_u(i, j, m, n) * t_L(m, n, L);
207 t_dP(L, J) =
208 -t_Ldiff_u(i, j, L) * (r_P_du(i, j, k, l) * t_Ldiff_u(k, l, J));
209 // viscous stress derivative
210 t_dP(L, J) -= (alphaU * ts_a) *
211 (t_L(i, j, L) * (t_diff(i, j, k, l) * t_L(k, l, J)));
212
216 t_deltaP_sym(i, j) = (t_deltaP(i, j) || t_deltaP(j, i));
217 t_deltaP_sym(i, j) /= 2.0;
218 auto t_diff2_uP2 = EigenMatrix::getDiffDiffMat(
219 t_eigen_vals, t_eigen_vecs, EshelbianCore::f, EshelbianCore::d_f,
220 EshelbianCore::dd_f, t_deltaP_sym, nbUniq[gg]);
221 t_dP(L, J) += t_L(i, j, L) * (t_diff2_uP2(i, j, k, l) * t_L(k, l, J));
222 }
223
224 ++t_P;
225 ++t_dP;
226 ++r_P_du;
227 ++t_approx_P_adjoint__dstretch;
228 ++t_dot_log_u;
229 ++t_u;
230 ++t_diff_u;
231 ++t_eigen_vals;
232 ++t_eigen_vecs;
233 }
234
236 };
237
238 int row_nb_base_functions = row_data.getN().size2();
239 auto t_row_base_fun = row_data.getFTensor0N();
240
241 auto t_dP = get_dP();
242 for (int gg = 0; gg != nb_integration_pts; ++gg) {
243 double a = v * t_w;
244
245 int rr = 0;
246 for (; rr != row_nb_dofs / 6; ++rr) {
247 auto t_col_base_fun = col_data.getFTensor0N(gg, 0);
248 auto t_m = get_ftensor2(K, 6 * rr, 0);
249 for (int cc = 0; cc != col_nb_dofs / 6; ++cc) {
250 const double b = a * t_row_base_fun * t_col_base_fun;
251 t_m(L, J) -= b * t_dP(L, J);
252 ++t_m;
253 ++t_col_base_fun;
254 }
255 ++t_row_base_fun;
256 }
257
258 for (; rr != row_nb_base_functions; ++rr) {
259 ++t_row_base_fun;
260 }
261
262 ++t_w;
263 ++t_dP;
264 }
266}
constexpr double a
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
FTensor::Index< 'i', SPACE_DIM > i
const double c
speed of light (cm/ns)
const double v
phase velocity of light in medium (cm/ns)
const double n
refractive index of diffusive medium
FTensor::Index< 'J', DIM1 > J
Definition level_set.cpp:30
FTensor::Index< 'l', 3 > l
FTensor::Index< 'j', 3 > j
FTensor::Index< 'k', 3 > k
auto getDiffDiffMat(A &&t_val, B &&t_vec, Fun< double > f, Fun< double > d_f, Fun< double > dd_f, C &&t_S, const int nb)
Get the Diff Diff Mat object.
static constexpr auto size_symm
static FTensor::Ddg< FTensor::PackPtr< T *, 1 >, Tensor_Dim01, Tensor_Dim23 > getFTensor4DdgFromMat(ublas::matrix< T, L, A > &data)
Get symmetric tensor rank 4 on first two and last indices from form data matrix.
FTensor::Tensor1< FTensor::PackPtr< T *, S >, Tensor_Dim > getFTensor1FromMat(ublas::matrix< T, L, A > &data)
Get tensor rank 1 (vector) form data matrix.
FTensor::Tensor2< FTensor::PackPtr< double *, 1 >, Tensor_Dim1, Tensor_Dim2 > getFTensor2FromMat(MatrixDouble &data)
Get tensor rank 2 (matrix) form data matrix.
static auto getFTensor2SymmetricFromMat(ublas::matrix< T, L, A > &data)
Get symmetric tensor rank 2 (matrix) form data matrix.
static FTensor::Tensor4< FTensor::PackPtr< T *, 1 >, Tensor_Dim0, Tensor_Dim1, Tensor_Dim2, Tensor_Dim3 > getFTensor4FromMat(ublas::matrix< T, L, A > &data)
Get tensor rank 4 (non symmetric) form data matrix.
int r
Definition sdf.py:8
FTensor::Index< 'm', 3 > m
static enum StretchSelector stretchSelector
static boost::function< double(const double)> f
static boost::function< double(const double)> dd_f
static boost::function< double(const double)> d_f
FTensor::Tensor0< FTensor::PackPtr< double *, 1 > > getFTensor0N(const FieldApproximationBase base)
Get base function as Tensor0.
MatrixDouble & getN(const FieldApproximationBase base)
get base functions this return matrix (nb. of rows is equal to nb. of Gauss pts, nb....
const VectorInt & getIndices() const
Get global indices of dofs on entity.
auto getFTensor0IntegrationWeight()
Get integration weights.

Member Data Documentation

◆ alphaU

const double EshelbianPlasticity::OpSpatialPhysical_du_du::alphaU
private

Definition at line 125 of file EshelbianADOL-C.cpp.

◆ dP

MatrixDouble EshelbianPlasticity::OpSpatialPhysical_du_du::dP
private

Definition at line 126 of file EshelbianADOL-C.cpp.


The documentation for this struct was generated from the following file: