v0.14.0
Public Member Functions | Private Attributes | List of all members
MonitorIncompressible Struct Reference
Inheritance diagram for MonitorIncompressible:
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Collaboration diagram for MonitorIncompressible:
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Public Member Functions

 MonitorIncompressible (SmartPetscObj< DM > dm, std::pair< boost::shared_ptr< PostProcEle >, boost::shared_ptr< SkinPostProcEle >> pair_post_proc_fe, std::tuple< SmartPetscObj< Vec >, SmartPetscObj< VecScatter >> ux_scatter, std::tuple< SmartPetscObj< Vec >, SmartPetscObj< VecScatter >> uy_scatter, std::tuple< SmartPetscObj< Vec >, SmartPetscObj< VecScatter >> uz_scatter, std::array< double, SPACE_DIM > pass_field_eval_coords, boost::shared_ptr< SetPtsData > pass_field_eval_data, boost::shared_ptr< MatrixDouble > vec_field_ptr)
 
MoFEMErrorCode preProcess ()
 function is run at the beginning of loop More...
 
MoFEMErrorCode operator() ()
 function is run for every finite element More...
 
MoFEMErrorCode postProcess ()
 function is run at the end of loop More...
 
- Public Member Functions inherited from MoFEM::FEMethod
MoFEMErrorCode query_interface (boost::typeindex::type_index type_index, UnknownInterface **iface) const
 
 FEMethod ()=default
 
auto getFEName () const
 get finite element name More...
 
auto getDataDofsPtr () const
 
auto getDataVectorDofsPtr () const
 
const FieldEntity_vector_viewgetDataFieldEnts () const
 
boost::shared_ptr< FieldEntity_vector_view > & getDataFieldEntsPtr () const
 
auto & getRowFieldEnts () const
 
auto & getRowFieldEntsPtr () const
 
auto & getColFieldEnts () const
 
auto & getColFieldEntsPtr () const
 
auto getRowDofsPtr () const
 
auto getColDofsPtr () const
 
auto getNumberOfNodes () const
 
EntityHandle getFEEntityHandle () const
 
MoFEMErrorCode getNodeData (const std::string field_name, VectorDouble &data, const bool reset_dofs=true)
 
- Public Member Functions inherited from MoFEM::BasicMethod
 BasicMethod ()
 
virtual ~BasicMethod ()=default
 
int getNinTheLoop () const
 get number of evaluated element in the loop More...
 
int getLoopSize () const
 get loop size More...
 
auto getLoHiFERank () const
 Get lo and hi processor rank of iterated entities. More...
 
auto getLoFERank () const
 Get upper rank in loop for iterating elements. More...
 
auto getHiFERank () const
 Get upper rank in loop for iterating elements. More...
 
unsigned int getFieldBitNumber (std::string field_name) const
 
MoFEMErrorCode copyBasicMethod (const BasicMethod &basic)
 Copy data from other base method to this base method. More...
 
boost::weak_ptr< CacheTuplegetCacheWeakPtr () const
 Get the cache weak ptr object. More...
 
- Public Member Functions inherited from MoFEM::KspMethod
 KspMethod ()
 
virtual ~KspMethod ()=default
 
MoFEMErrorCode copyKsp (const KspMethod &ksp)
 copy data form another method More...
 
- Public Member Functions inherited from MoFEM::PetscData
 PetscData ()
 
virtual ~PetscData ()=default
 
MoFEMErrorCode copyPetscData (const PetscData &petsc_data)
 
- Public Member Functions inherited from MoFEM::UnknownInterface
template<class IFACE >
MoFEMErrorCode registerInterface (bool error_if_registration_failed=true)
 Register interface. More...
 
template<class IFACE >
MoFEMErrorCode getInterface (IFACE *&iface) const
 Get interface reference to pointer of interface. More...
 
template<class IFACE >
MoFEMErrorCode getInterface (IFACE **const iface) const
 Get interface pointer to pointer of interface. More...
 
template<class IFACE , typename boost::enable_if< boost::is_pointer< IFACE >, int >::type = 0>
IFACE getInterface () const
 Get interface pointer to pointer of interface. More...
 
template<class IFACE , typename boost::enable_if< boost::is_reference< IFACE >, int >::type = 0>
IFACE getInterface () const
 Get reference to interface. More...
 
template<class IFACE >
IFACE * getInterface () const
 Function returning pointer to interface. More...
 
virtual ~UnknownInterface ()=default
 
- Public Member Functions inherited from MoFEM::SnesMethod
 SnesMethod ()
 
virtual ~SnesMethod ()=default
 
MoFEMErrorCode copySnes (const SnesMethod &snes)
 Copy snes data. More...
 
- Public Member Functions inherited from MoFEM::TSMethod
 TSMethod ()
 
virtual ~TSMethod ()=default
 
MoFEMErrorCode copyTs (const TSMethod &ts)
 Copy TS solver data. More...
 

Private Attributes

SmartPetscObj< DM > dM
 
boost::shared_ptr< PostProcElepostProcFe
 
boost::shared_ptr< SkinPostProcEleskinPostProcFe
 
std::tuple< SmartPetscObj< Vec >, SmartPetscObj< VecScatter > > uXScatter
 
std::tuple< SmartPetscObj< Vec >, SmartPetscObj< VecScatter > > uYScatter
 
std::tuple< SmartPetscObj< Vec >, SmartPetscObj< VecScatter > > uZScatter
 
std::array< double, SPACE_DIMfieldEvalCoords
 
boost::shared_ptr< SetPtsDatafieldEvalData
 
boost::shared_ptr< MatrixDouble > vecFieldPtr
 

Additional Inherited Members

- Public Types inherited from MoFEM::KspMethod
enum  KSPContext { CTX_SETFUNCTION, CTX_OPERATORS, CTX_KSPNONE }
 pass information about context of KSP/DM for with finite element is computed More...
 
- Public Types inherited from MoFEM::PetscData
enum  DataContext {
  CTX_SET_NONE = 0, CTX_SET_F = 1 << 0, CTX_SET_A = 1 << 1, CTX_SET_B = 1 << 2,
  CTX_SET_X = 1 << 3, CTX_SET_X_T = 1 << 4, CTX_SET_X_TT = 1 << 6, CTX_SET_TIME = 1 << 7
}
 
using Switches = std::bitset< 8 >
 
- Public Types inherited from MoFEM::SnesMethod
enum  SNESContext { CTX_SNESSETFUNCTION, CTX_SNESSETJACOBIAN, CTX_SNESNONE }
 
- Public Types inherited from MoFEM::TSMethod
enum  TSContext {
  CTX_TSSETRHSFUNCTION, CTX_TSSETRHSJACOBIAN, CTX_TSSETIFUNCTION, CTX_TSSETIJACOBIAN,
  CTX_TSTSMONITORSET, CTX_TSNONE
}
 
- Static Public Member Functions inherited from MoFEM::UnknownInterface
static MoFEMErrorCode getLibVersion (Version &version)
 Get library version. More...
 
static MoFEMErrorCode getFileVersion (moab::Interface &moab, Version &version)
 Get database major version. More...
 
static MoFEMErrorCode setFileVersion (moab::Interface &moab, Version version=Version(MoFEM_VERSION_MAJOR, MoFEM_VERSION_MINOR, MoFEM_VERSION_BUILD))
 Get database major version. More...
 
static MoFEMErrorCode getInterfaceVersion (Version &version)
 Get database major version. More...
 
- Public Attributes inherited from MoFEM::FEMethod
std::string feName
 Name of finite element. More...
 
boost::shared_ptr< const NumeredEntFiniteElementnumeredEntFiniteElementPtr
 
boost::function< bool(FEMethod *fe_method_ptr)> exeTestHook
 Tet if element to skip element. More...
 
- Public Attributes inherited from MoFEM::BasicMethod
int nInTheLoop
 number currently of processed method More...
 
int loopSize
 local number oe methods to process More...
 
std::pair< int, int > loHiFERank
 Llo and hi processor rank of iterated entities. More...
 
int rAnk
 processor rank More...
 
int sIze
 number of processors in communicator More...
 
const RefEntity_multiIndexrefinedEntitiesPtr
 container of mofem dof entities More...
 
const RefElement_multiIndexrefinedFiniteElementsPtr
 container of mofem finite element entities More...
 
const ProblemproblemPtr
 raw pointer to problem More...
 
const Field_multiIndexfieldsPtr
 raw pointer to fields container More...
 
const FieldEntity_multiIndexentitiesPtr
 raw pointer to container of field entities More...
 
const DofEntity_multiIndexdofsPtr
 raw pointer container of dofs More...
 
const FiniteElement_multiIndexfiniteElementsPtr
 raw pointer to container finite elements More...
 
const EntFiniteElement_multiIndexfiniteElementsEntitiesPtr
 
const FieldEntityEntFiniteElementAdjacencyMap_multiIndexadjacenciesPtr
 
boost::function< MoFEMErrorCode()> preProcessHook
 Hook function for pre-processing. More...
 
boost::function< MoFEMErrorCode()> postProcessHook
 Hook function for post-processing. More...
 
boost::function< MoFEMErrorCode()> operatorHook
 Hook function for operator. More...
 
boost::movelib::unique_ptr< boolvecAssembleSwitch
 
boost::movelib::unique_ptr< boolmatAssembleSwitch
 
boost::weak_ptr< CacheTuplecacheWeakPtr
 
- Public Attributes inherited from MoFEM::KspMethod
KSPContext ksp_ctx
 Context. More...
 
KSP ksp
 KSP solver. More...
 
Vec & ksp_f
 
Mat & ksp_A
 
Mat & ksp_B
 
- Public Attributes inherited from MoFEM::PetscData
Switches data_ctx
 
Vec f
 
Mat A
 
Mat B
 
Vec x
 
Vec x_t
 
Vec x_tt
 
- Public Attributes inherited from MoFEM::SnesMethod
SNESContext snes_ctx
 
SNES snes
 snes solver More...
 
Vec & snes_x
 state vector More...
 
Vec & snes_f
 residual More...
 
Mat & snes_A
 jacobian matrix More...
 
Mat & snes_B
 preconditioner of jacobian matrix More...
 
- Public Attributes inherited from MoFEM::TSMethod
TS ts
 time solver More...
 
TSContext ts_ctx
 
PetscInt ts_step
 time step number More...
 
PetscReal ts_a
 shift for U_t (see PETSc Time Solver) More...
 
PetscReal ts_aa
 shift for U_tt shift for U_tt More...
 
PetscReal ts_t
 time More...
 
PetscReal ts_dt
 time step size More...
 
Vec & ts_u
 state vector More...
 
Vec & ts_u_t
 time derivative of state vector More...
 
Vec & ts_u_tt
 second time derivative of state vector More...
 
Vec & ts_F
 residual vector More...
 
Mat & ts_A
 
Mat & ts_B
 Preconditioner for ts_A. More...
 
- Static Public Attributes inherited from MoFEM::PetscData
static constexpr Switches CtxSetNone = PetscData::Switches(CTX_SET_NONE)
 
static constexpr Switches CtxSetF = PetscData::Switches(CTX_SET_F)
 
static constexpr Switches CtxSetA = PetscData::Switches(CTX_SET_A)
 
static constexpr Switches CtxSetB = PetscData::Switches(CTX_SET_B)
 
static constexpr Switches CtxSetX = PetscData::Switches(CTX_SET_X)
 
static constexpr Switches CtxSetX_T = PetscData::Switches(CTX_SET_X_T)
 
static constexpr Switches CtxSetX_TT = PetscData::Switches(CTX_SET_X_TT)
 
static constexpr Switches CtxSetTime = PetscData::Switches(CTX_SET_TIME)
 

Detailed Description

Definition at line 42 of file incompressible_elasticity.cpp.

Constructor & Destructor Documentation

◆ MonitorIncompressible()

MonitorIncompressible::MonitorIncompressible ( SmartPetscObj< DM >  dm,
std::pair< boost::shared_ptr< PostProcEle >, boost::shared_ptr< SkinPostProcEle >>  pair_post_proc_fe,
std::tuple< SmartPetscObj< Vec >, SmartPetscObj< VecScatter >>  ux_scatter,
std::tuple< SmartPetscObj< Vec >, SmartPetscObj< VecScatter >>  uy_scatter,
std::tuple< SmartPetscObj< Vec >, SmartPetscObj< VecScatter >>  uz_scatter,
std::array< double, SPACE_DIM pass_field_eval_coords,
boost::shared_ptr< SetPtsData pass_field_eval_data,
boost::shared_ptr< MatrixDouble >  vec_field_ptr 
)
inline

Definition at line 44 of file incompressible_elasticity.cpp.

55  : dM(dm), uXScatter(ux_scatter), uYScatter(uy_scatter),
56  uZScatter(uz_scatter), fieldEvalCoords(pass_field_eval_coords),
57  fieldEvalData(pass_field_eval_data), vecFieldPtr(vec_field_ptr) {
58  postProcFe = pair_post_proc_fe.first;
59  skinPostProcFe = pair_post_proc_fe.second;
60  };

Member Function Documentation

◆ operator()()

MoFEMErrorCode MonitorIncompressible::operator() ( )
inlinevirtual

function is run for every finite element

It is used to calculate element local matrices and assembly. It can be used for post-processing.

Reimplemented from MoFEM::BasicMethod.

Definition at line 63 of file incompressible_elasticity.cpp.

63 { return 0; }

◆ postProcess()

MoFEMErrorCode MonitorIncompressible::postProcess ( )
inlinevirtual

function is run at the end of loop

It is used to assembly matrices and vectors, calculating global variables, f.e. total internal energy, ect.

Iterating over dofs: Example1 iterating over dofs in row by name of the field for(IT_GET_FEROW_BY_NAME_DOFS_FOR_LOOP(this,"DISPLACEMENT",it)) { ... }

Reimplemented from MoFEM::BasicMethod.

Definition at line 65 of file incompressible_elasticity.cpp.

65  {
67 
68  MoFEM::Interface *m_field_ptr;
69  CHKERR DMoFEMGetInterfacePtr(dM, &m_field_ptr);
70  auto *simple = m_field_ptr->getInterface<Simple>();
71 
72  if (doEvalField) {
73  if (SPACE_DIM == 3) {
75  ->evalFEAtThePoint3D(
76  fieldEvalCoords.data(), 1e-12, simple->getProblemName(),
77  simple->getDomainFEName(), fieldEvalData,
78  m_field_ptr->get_comm_rank(), m_field_ptr->get_comm_rank(),
79  getCacheWeakPtr().lock(), MF_EXIST, QUIET);
80  } else {
82  ->evalFEAtThePoint2D(
83  fieldEvalCoords.data(), 1e-12, simple->getProblemName(),
84  simple->getDomainFEName(), fieldEvalData,
85  m_field_ptr->get_comm_rank(), m_field_ptr->get_comm_rank(),
86  getCacheWeakPtr().lock(), MF_EXIST, QUIET);
87  }
88 
89  if (vecFieldPtr->size1()) {
90  auto t_disp = getFTensor1FromMat<SPACE_DIM>(*vecFieldPtr);
91  if constexpr (SPACE_DIM == 2)
92  MOFEM_LOG("SYNC", Sev::inform)
93  << "U_X: " << t_disp(0) << " U_Y: " << t_disp(1);
94  else
95  MOFEM_LOG("SYNC", Sev::inform)
96  << "U_X: " << t_disp(0) << " U_Y: " << t_disp(1)
97  << " U_Z: " << t_disp(2);
98  }
99  }
100  MOFEM_LOG_SEVERITY_SYNC(m_field_ptr->get_comm(), Sev::inform);
101 
102  auto make_vtk = [&]() {
104  if (postProcFe) {
106  getCacheWeakPtr());
107  CHKERR postProcFe->writeFile("out_incomp_elasticity" +
108  boost::lexical_cast<std::string>(ts_step) +
109  ".h5m");
110  }
111  if (skinPostProcFe) {
113  getCacheWeakPtr());
114  CHKERR skinPostProcFe->writeFile(
115  "out_skin_incomp_elasticity_" +
116  boost::lexical_cast<std::string>(ts_step) + ".h5m");
117  }
119  };
120 
121  auto print_max_min = [&](auto &tuple, const std::string msg) {
123  CHKERR VecScatterBegin(std::get<1>(tuple), ts_u, std::get<0>(tuple),
124  INSERT_VALUES, SCATTER_FORWARD);
125  CHKERR VecScatterEnd(std::get<1>(tuple), ts_u, std::get<0>(tuple),
126  INSERT_VALUES, SCATTER_FORWARD);
127  double max, min;
128  CHKERR VecMax(std::get<0>(tuple), PETSC_NULL, &max);
129  CHKERR VecMin(std::get<0>(tuple), PETSC_NULL, &min);
130  MOFEM_LOG_C("INCOMP_ELASTICITY", Sev::inform,
131  "%s time %3.4e min %3.4e max %3.4e", msg.c_str(), ts_t, min,
132  max);
134  };
135 
136  CHKERR make_vtk();
137  CHKERR print_max_min(uXScatter, "Ux");
138  CHKERR print_max_min(uYScatter, "Uy");
139  if constexpr (SPACE_DIM == 3)
140  CHKERR print_max_min(uZScatter, "Uz");
141 
143  }

◆ preProcess()

MoFEMErrorCode MonitorIncompressible::preProcess ( )
inlinevirtual

function is run at the beginning of loop

It is used to zeroing matrices and vectors, calculation of shape functions on reference element, preprocessing boundary conditions, etc.

Reimplemented from MoFEM::BasicMethod.

Definition at line 62 of file incompressible_elasticity.cpp.

62 { return 0; }

Member Data Documentation

◆ dM

SmartPetscObj<DM> MonitorIncompressible::dM
private

Definition at line 146 of file incompressible_elasticity.cpp.

◆ fieldEvalCoords

std::array<double, SPACE_DIM> MonitorIncompressible::fieldEvalCoords
private

Definition at line 152 of file incompressible_elasticity.cpp.

◆ fieldEvalData

boost::shared_ptr<SetPtsData> MonitorIncompressible::fieldEvalData
private

Definition at line 153 of file incompressible_elasticity.cpp.

◆ postProcFe

boost::shared_ptr<PostProcEle> MonitorIncompressible::postProcFe
private

Definition at line 147 of file incompressible_elasticity.cpp.

◆ skinPostProcFe

boost::shared_ptr<SkinPostProcEle> MonitorIncompressible::skinPostProcFe
private

Definition at line 148 of file incompressible_elasticity.cpp.

◆ uXScatter

std::tuple<SmartPetscObj<Vec>, SmartPetscObj<VecScatter> > MonitorIncompressible::uXScatter
private

Definition at line 149 of file incompressible_elasticity.cpp.

◆ uYScatter

std::tuple<SmartPetscObj<Vec>, SmartPetscObj<VecScatter> > MonitorIncompressible::uYScatter
private

Definition at line 150 of file incompressible_elasticity.cpp.

◆ uZScatter

std::tuple<SmartPetscObj<Vec>, SmartPetscObj<VecScatter> > MonitorIncompressible::uZScatter
private

Definition at line 151 of file incompressible_elasticity.cpp.

◆ vecFieldPtr

boost::shared_ptr<MatrixDouble> MonitorIncompressible::vecFieldPtr
private

Definition at line 154 of file incompressible_elasticity.cpp.


The documentation for this struct was generated from the following file:
MoFEM::UnknownInterface::getInterface
MoFEMErrorCode getInterface(IFACE *&iface) const
Get interface reference to pointer of interface.
Definition: UnknownInterface.hpp:93
MonitorIncompressible::dM
SmartPetscObj< DM > dM
Definition: incompressible_elasticity.cpp:146
MonitorIncompressible::postProcFe
boost::shared_ptr< PostProcEle > postProcFe
Definition: incompressible_elasticity.cpp:147
MOFEM_LOG_SEVERITY_SYNC
#define MOFEM_LOG_SEVERITY_SYNC(comm, severity)
Synchronise "SYNC" on curtain severity level.
Definition: LogManager.hpp:352
MoFEM::CoreInterface::get_comm_rank
virtual int get_comm_rank() const =0
MonitorIncompressible::uYScatter
std::tuple< SmartPetscObj< Vec >, SmartPetscObj< VecScatter > > uYScatter
Definition: incompressible_elasticity.cpp:150
MonitorIncompressible::fieldEvalCoords
std::array< double, SPACE_DIM > fieldEvalCoords
Definition: incompressible_elasticity.cpp:152
MoFEM::Simple
Simple interface for fast problem set-up.
Definition: Simple.hpp:27
MoFEM::DeprecatedCoreInterface
Deprecated interface functions.
Definition: DeprecatedCoreInterface.hpp:16
CHKERR
#define CHKERR
Inline error check.
Definition: definitions.h:535
MOFEM_LOG_C
#define MOFEM_LOG_C(channel, severity, format,...)
Definition: LogManager.hpp:311
MonitorIncompressible::fieldEvalData
boost::shared_ptr< SetPtsData > fieldEvalData
Definition: incompressible_elasticity.cpp:153
MoFEM::FieldEvaluatorInterface
Field evaluator interface.
Definition: FieldEvaluator.hpp:21
simple
void simple(double P1[], double P2[], double P3[], double c[], const int N)
Definition: acoustic.cpp:69
SPACE_DIM
constexpr int SPACE_DIM
Definition: incompressible_elasticity.cpp:10
doEvalField
PetscBool doEvalField
Definition: incompressible_elasticity.cpp:41
MoFEM::LogManager::SeverityLevel
SeverityLevel
Severity levels.
Definition: LogManager.hpp:33
MonitorIncompressible::vecFieldPtr
boost::shared_ptr< MatrixDouble > vecFieldPtr
Definition: incompressible_elasticity.cpp:154
MoFEM::TSMethod::ts_step
PetscInt ts_step
time step number
Definition: LoopMethods.hpp:159
MOFEM_LOG
#define MOFEM_LOG(channel, severity)
Log.
Definition: LogManager.hpp:308
MoFEM::TSMethod::ts_t
PetscReal ts_t
time
Definition: LoopMethods.hpp:162
MoFEM::DMoFEMGetInterfacePtr
PetscErrorCode DMoFEMGetInterfacePtr(DM dm, MoFEM::Interface **m_field_ptr)
Get pointer to MoFEM::Interface.
Definition: DMMoFEM.cpp:414
MoFEM::TSMethod::ts_u
Vec & ts_u
state vector
Definition: LoopMethods.hpp:165
MonitorIncompressible::skinPostProcFe
boost::shared_ptr< SkinPostProcEle > skinPostProcFe
Definition: incompressible_elasticity.cpp:148
QUIET
@ QUIET
Definition: definitions.h:208
MonitorIncompressible::uXScatter
std::tuple< SmartPetscObj< Vec >, SmartPetscObj< VecScatter > > uXScatter
Definition: incompressible_elasticity.cpp:149
MoFEM::BasicMethod::getCacheWeakPtr
boost::weak_ptr< CacheTuple > getCacheWeakPtr() const
Get the cache weak ptr object.
Definition: LoopMethods.hpp:344
MoFEM::DMoFEMLoopFiniteElements
PetscErrorCode DMoFEMLoopFiniteElements(DM dm, const char fe_name[], MoFEM::FEMethod *method, CacheTupleWeakPtr cache_ptr=CacheTupleSharedPtr())
Executes FEMethod for finite elements in DM.
Definition: DMMoFEM.cpp:586
MF_EXIST
@ MF_EXIST
Definition: definitions.h:100
MoFEMFunctionReturn
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:416
MoFEMFunctionBegin
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:346
MonitorIncompressible::uZScatter
std::tuple< SmartPetscObj< Vec >, SmartPetscObj< VecScatter > > uZScatter
Definition: incompressible_elasticity.cpp:151