Simple interface for fast problem set-up. More...

#include <src/interfaces/Simple.hpp>

Inheritance diagram for MoFEM::Simple:

Collaboration diagram for MoFEM::Simple:

Public Types
typedef boost::function< MoFEMErrorCode(Interface &, const char , const char )>	LoadFileFunc

Public Member Functions
MoFEMErrorCode	query_interface (boost::typeindex::type_index type_index, UnknownInterface **iface) const

	Simple (const MoFEM::Core &core)

virtual	~Simple ()=default

MoFEMErrorCode	getOptions ()
	get options More...

MoFEMErrorCode	loadFile (const std::string options, const std::string mesh_file_name, LoadFileFunc loadFunc=defaultLoadFileFunc)
	Load mesh file. More...

MoFEMErrorCode	loadFile (const std::string mesh_file_name="")
	Load mesh file with parallel options if number of cores > 1. More...

MoFEMErrorCode	addDomainField (const std::string name, const FieldSpace space, const FieldApproximationBase base, const FieldCoefficientsNumber nb_of_coefficients, const TagType tag_type=MB_TAG_SPARSE, const enum MoFEMTypes bh=MF_ZERO, int verb=-1)
	Add field on domain. More...

MoFEMErrorCode	addDomainBrokenField (const std::string name, const FieldSpace space, const FieldApproximationBase base, const FieldCoefficientsNumber nb_of_coefficients, const TagType tag_type=MB_TAG_SPARSE, const enum MoFEMTypes bh=MF_ZERO, int verb=-1)
	Add broken field on domain. More...

MoFEMErrorCode	addBoundaryField (const std::string name, const FieldSpace space, const FieldApproximationBase base, const FieldCoefficientsNumber nb_of_coefficients, const TagType tag_type=MB_TAG_SPARSE, const enum MoFEMTypes bh=MF_ZERO, int verb=-1)
	Add field on boundary. More...

MoFEMErrorCode	addSkeletonField (const std::string name, const FieldSpace space, const FieldApproximationBase base, const FieldCoefficientsNumber nb_of_coefficients, const TagType tag_type=MB_TAG_SPARSE, const enum MoFEMTypes bh=MF_ZERO, int verb=-1)
	Add field on skeleton. More...

MoFEMErrorCode	addDataField (const std::string name, const FieldSpace space, const FieldApproximationBase base, const FieldCoefficientsNumber nb_of_coefficients, const TagType tag_type=MB_TAG_SPARSE, const enum MoFEMTypes bh=MF_ZERO, int verb=-1)
	Add field on domain. More...

MoFEMErrorCode	addMeshsetField (const std::string name, const FieldSpace space, const FieldApproximationBase base, const FieldCoefficientsNumber nb_of_coefficients, const TagType tag_type=MB_TAG_SPARSE, const enum MoFEMTypes bh=MF_ZERO, int verb=-1)
	Add meshset field. More...

MoFEMErrorCode	removeDomainField (const std::string name)
	Remove field form domain. More...

MoFEMErrorCode	removeBoundaryField (const std::string name)
	Remove field form boundary. More...

MoFEMErrorCode	removeSkeletonField (const std::string name)
	Remove field form skeleton. More...

MoFEMErrorCode	defineFiniteElements ()
	Define finite elements. More...

MoFEMErrorCode	defineProblem (const PetscBool is_partitioned=PETSC_TRUE)
	define problem More...

MoFEMErrorCode	setFieldOrder (const std::string field_name, const int order, const Range *ents=NULL)
	Set field order. More...

MoFEMErrorCode	buildFields ()
	Build fields. More...

MoFEMErrorCode	buildFiniteElements ()
	Build finite elements. More...

MoFEMErrorCode	setSkeletonAdjacency (int dim=-1, std::string fe_name="")
	Set the skeleton adjacency object. More...

MoFEMErrorCode	buildProblem ()
	Build problem. More...

MoFEMErrorCode	setUp (const PetscBool is_partitioned=PETSC_TRUE)
	Setup problem. More...

MoFEMErrorCode	reSetUp (bool only_dm=false)
	Rebuild internal MoFEM data structures. More...

MoFEMErrorCode	getDM (DM *dm)
	Get DM. More...

SmartPetscObj< DM >	getDM ()
	Return smart DM object. More...

int	getDim () const
	Get the problem dimension. More...

void	setDim (int dim)
	Set the problem dimension. More...

DEPRECATED EntityHandle &	getMeshSet ()

EntityHandle &	getMeshset ()
	Get the MeshSet object. More...

EntityHandle &	getBoundaryMeshSet ()
	Get the BoundaryMeshSet object. More...

EntityHandle &	getSkeletonMeshSet ()
	Get the SkeletonMeshSet object. More...

BitRefLevel &	getBitRefLevel ()
	Get the BitRefLevel. More...

BitRefLevel &	getBitRefLevelMask ()
	Get the BitRefLevel. More...

const std::string	getDomainFEName () const
	Get the Domain FE Name. More...

const std::string	getBoundaryFEName () const
	Get the Boundary FE Name. More...

const std::string	getSkeletonFEName () const
	Get the Skeleton FE Name. More...

const std::string	getProblemName () const
	Get the Problem Name. More...

std::string &	getDomainFEName ()
	Get the Domain FE Name. More...

std::string &	getBoundaryFEName ()
	Get the Boundary FE Name. More...

std::string &	getSkeletonFEName ()
	Get the Skeleton FE Name. More...

std::string &	getMeshsetFEName ()
	Get the Skeleton FE Name. More...

auto &	getMeshsetFiniteElementEntities ()
	Get the Domain Fields. More...

std::string &	getProblemName ()
	Get the Problem Name. More...

std::vector< std::string > &	getOtherFiniteElements ()
	Get the Other Finite Elements. More...

MoFEMErrorCode	deleteDM ()
	Delete dm. More...

MoFEMErrorCode	deleteFiniteElements ()
	Delete finite elements. More...

bool &	getAddSkeletonFE ()
	Get the addSkeletonFE. More...

bool &	getAddBoundaryFE ()
	Get the addSkeletonFE. More...

bool &	getParentAdjacencies ()
	Get the addParentAdjacencies. More...

auto &	getBitAdjParent ()
	bit ref level for parent More...

auto &	getBitAdjParentMask ()
	bit ref level for parent parent More...

auto &	getBitAdjEnt ()
	bit ref level for parent More...

auto &	getBitAdjEntMask ()
	bit ref level for parent parent More...

MoFEMErrorCode	addFieldToEmptyFieldBlocks (const std::string row_field, const std::string col_field) const
	add empty block to problem More...

Public Member Functions inherited from MoFEM::UnknownInterface
template<class IFACE >
MoFEMErrorCode	registerInterface (bool error_if_registration_failed=true)
	Register interface. More...

template<class IFACE >
MoFEMErrorCode	getInterface (IFACE *&iface) const
	Get interface reference to pointer of interface. More...

template<class IFACE >
MoFEMErrorCode	getInterface (IFACE **const iface) const
	Get interface pointer to pointer of interface. More...

template<class IFACE , typename boost::enable_if< boost::is_pointer< IFACE >, int >::type = 0>
IFACE	getInterface () const
	Get interface pointer to pointer of interface. More...

template<class IFACE , typename boost::enable_if< boost::is_reference< IFACE >, int >::type = 0>
IFACE	getInterface () const
	Get reference to interface. More...

template<class IFACE >
IFACE *	getInterface () const
	Function returning pointer to interface. More...

virtual	~UnknownInterface ()=default

Static Public Member Functions
static MoFEMErrorCode	defaultLoadFileFunc (Interface &m_field, const char file_name, const char options)
	Set function for loading mesh file. More...

Static Public Member Functions inherited from MoFEM::UnknownInterface
static MoFEMErrorCode	getLibVersion (Version &version)
	Get library version. More...

static MoFEMErrorCode	getFileVersion (moab::Interface &moab, Version &version)
	Get database major version. More...

static MoFEMErrorCode	setFileVersion (moab::Interface &moab, Version version=Version(MoFEM_VERSION_MAJOR, MoFEM_VERSION_MINOR, MoFEM_VERSION_BUILD))
	Get database major version. More...

static MoFEMErrorCode	getInterfaceVersion (Version &version)
	Get database major version. More...

Private Member Functions
MoFEMErrorCode	createBoundaryMeshset ()

MoFEMErrorCode	createSkeletonMeshset ()

MoFEMErrorCode	exchangeGhostCells ()

template<int DIM = -1>
MoFEMErrorCode	setSkeletonAdjacency (std::string fe_name)

template<int DIM = -1>
MoFEMErrorCode	setParentAdjacency ()

template<>
MoFEMErrorCode	setSkeletonAdjacency (std::string fe_name)

template<>
MoFEMErrorCode	setSkeletonAdjacency (std::string fe_name)

template<>
MoFEMErrorCode	setSkeletonAdjacency (std::string fe_name)

template<>
MoFEMErrorCode	setParentAdjacency ()

template<>
MoFEMErrorCode	setParentAdjacency ()

template<>
MoFEMErrorCode	setParentAdjacency ()

Private Attributes
MoFEM::Core &	cOre

BitRefLevel	bitLevel
	BitRefLevel of the problem. More...

BitRefLevel	bitLevelMask
	BitRefLevel of the problem. More...

PetscLogEvent	MOFEM_EVENT_SimpleSetUP

PetscLogEvent	MOFEM_EVENT_SimpleLoadMesh

PetscLogEvent	MOFEM_EVENT_SimpleBuildFields

PetscLogEvent	MOFEM_EVENT_SimpleBuildFiniteElements

PetscLogEvent	MOFEM_EVENT_SimpleBuildProblem

PetscLogEvent	MOFEM_EVENT_SimpleKSPSolve

EntityHandle	meshSet
	domain meshset More...

EntityHandle	boundaryMeshset
	meshset with boundary More...

EntityHandle	skeletonMeshset
	skeleton meshset with boundary More...

bool	addSkeletonFE
	Add skeleton FE. More...

bool	addBoundaryFE
	Add boundary FE. More...

bool	addParentAdjacencies
	If set to true parent adjacencies are build. More...

BitRefLevel	bitAdjParent
	bit ref level for parent More...

BitRefLevel	bitAdjParentMask
	bit ref level for parent parent More...

BitRefLevel	bitAdjEnt
	bit ref level for parent More...

BitRefLevel	bitAdjEntMask
	bit ref level for parent parent More...

std::vector< std::string >	domainFields
	domain fields More...

std::vector< std::string >	boundaryFields
	boundary fields More...

std::vector< std::string >	skeletonFields
	fields on the skeleton More...

std::vector< std::string >	dataFields
	Data fields. More...

std::vector< std::string >	meshsetFields
	meshset fields More...

std::vector< std::string >	noFieldFields
	NOFIELD field name. More...

std::vector< std::string >	noFieldDataFields
	NOFIELD field name. More...

std::list< std::tuple< std::string, int, Range, bool > >	fieldsOrder

std::string	nameOfProblem = "SimpleProblem"
	problem name More...

std::string	domainFE = "dFE"
	domain finite element More...

std::string	boundaryFE = "bFE"
	boundary finite element More...

std::string	skeletonFE = "sFE"
	skeleton finite element More...

std::string	meshsetFE = "mFE"
	meshset finite element More...

std::vector< std::string >	otherFEs
	Other finite elements. More...

std::vector< Range >	meshsetFiniteElementEntities
	Meshset element entities. More...

char	meshFileName [255]
	mesh file name More...

int	dIm
	dimension of problem More...

SmartPetscObj< DM >	dM
	Discrete manager (interface to PETSc/MoFEM functions) More...

boost::shared_ptr< ParentFiniteElementAdjacencyFunction< 3 > >	parentAdjFunctionDim3

boost::shared_ptr< ParentFiniteElementAdjacencyFunction< 2 > >	parentAdjFunctionDim2

boost::shared_ptr< ParentFiniteElementAdjacencyFunction< 1 > >	parentAdjFunctionDim1

boost::shared_ptr< ParentFiniteElementAdjacencyFunctionSkeleton< 2 > >	parentAdjSkeletonFunctionDim2

boost::shared_ptr< ParentFiniteElementAdjacencyFunctionSkeleton< 1 > >	parentAdjSkeletonFunctionDim1

Detailed Description

Simple interface for fast problem set-up.

Examples: adolc_plasticity.cpp, approx_sphere.cpp, boundary_marker.cpp, child_and_parent.cpp, continuity_check_on_skeleton_with_simple_2d_for_h1.cpp, continuity_check_on_skeleton_with_simple_2d_for_hcurl.cpp, continuity_check_on_skeleton_with_simple_2d_for_hdiv.cpp, dg_projection.cpp, dynamic_first_order_con_law.cpp, eigen_elastic.cpp, field_evaluator.cpp, free_surface.cpp, hanging_node_approx.cpp, hcurl_check_approx_in_2d.cpp, hcurl_curl_operator.cpp, hdiv_check_approx_in_3d.cpp, hdiv_divergence_operator.cpp, heat_equation.cpp, heat_method.cpp, hello_world.cpp, helmholtz.cpp, higher_derivatives.cpp, level_set.cpp, loop_entities.cpp, mesh_smoothing.cpp, mixed_poisson.cpp, operators_tests.cpp, partition_mesh.cpp, phase.cpp, photon_diffusion.cpp, plastic.cpp, plate.cpp, plot_base.cpp, poisson_2d_dis_galerkin.cpp, poisson_2d_homogeneous.cpp, reaction_diffusion.cpp, scalar_check_approximation.cpp, schur_test_diag_mat.cpp, seepage.cpp, shallow_wave.cpp, simple_elasticity.cpp, simple_interface.cpp, simple_l2_only.cpp, tensor_divergence_operator.cpp, test_broken_space.cpp, test_cache_on_entities.cpp, testing_jacobian_of_hook_element.cpp, testing_jacobian_of_hook_scaled_with_density_element.cpp, thermo_elastic.cpp, and wave_equation.cpp.

Definition at line 27 of file Simple.hpp.

Member Typedef Documentation

◆ LoadFileFunc

typedef boost::function<MoFEMErrorCode(Interface &, const char *, const char *)> MoFEM::Simple::LoadFileFunc

Definition at line 43 of file Simple.hpp.

Constructor & Destructor Documentation

◆ Simple()

MoFEM::Simple::Simple ( const MoFEM::Core & core )

Definition at line 162 of file Simple.cpp.

     : cOre(const_cast<Core &>(core)), bitLevel(BitRefLevel().set(0)),
       bitLevelMask(BitRefLevel().set()), meshSet(0), boundaryMeshset(0),
       skeletonMeshset(0), nameOfProblem("SimpleProblem"), domainFE("dFE"),
       boundaryFE("bFE"), skeletonFE("sFE"), dIm(-1), addSkeletonFE(false),
       addBoundaryFE(false), addParentAdjacencies(false),
       bitAdjParent(BitRefLevel().set()), bitAdjParentMask(BitRefLevel().set()),
       bitAdjEnt(BitRefLevel().set()), bitAdjEntMask(BitRefLevel().set()) {
   PetscLogEventRegister("SimpSetUp", 0, &MOFEM_EVENT_SimpleSetUP);
   PetscLogEventRegister("SimpLoadMesh", 0, &MOFEM_EVENT_SimpleLoadMesh);
   PetscLogEventRegister("SimpBuildFields", 0, &MOFEM_EVENT_SimpleBuildFields);
   PetscLogEventRegister("SimpBuildFEs", 0,
                         &MOFEM_EVENT_SimpleBuildFiniteElements);
   PetscLogEventRegister("SimpSetUp", 0, &MOFEM_EVENT_SimpleBuildProblem);
   PetscLogEventRegister("SimpKSPSolve", 0, &MOFEM_EVENT_SimpleKSPSolve);
   strcpy(meshFileName, "mesh.h5m");
 }

◆ ~Simple()

virtual MoFEM::Simple::~Simple ( )

virtualdefault

Member Function Documentation

◆ addBoundaryField()

MoFEMErrorCode MoFEM::Simple::addBoundaryField	(	const std::string	name,
		const FieldSpace	space,
		const FieldApproximationBase	base,
		const FieldCoefficientsNumber	nb_of_coefficients,
		const TagType	tag_type = `MB_TAG_SPARSE`,
		const enum MoFEMTypes	bh = `MF_ZERO`,
		int	verb = `-1`
	)

Add field on boundary.

Parameters

name	name of the field
space	space (L2,H1,Hdiv,Hcurl)
base	approximation base, see FieldApproximationBase
nb_of_coefficients	number of field coefficients
tag_type	type of the tag MB_TAG_DENSE or MB_TAG_SPARSE (DENSE is faster and uses less memory, SPARSE is more flexible if you define field on subdomains)
bh	if MF_EXCL throws error if field exits, MF_ZERO no error if field exist
verb	verbosity level

Returns: error code

Examples: child_and_parent.cpp, hcurl_curl_operator.cpp, hdiv_divergence_operator.cpp, mesh_smoothing.cpp, and simple_interface.cpp.

Definition at line 358 of file Simple.cpp.

                                    {
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
   CHKERR m_field.add_field(name, space, base, nb_of_coefficients, tag_type, bh,
                            verb);
   boundaryFields.push_back(name);
   if (space == NOFIELD)
     SETERRQ(
         PETSC_COMM_SELF, MOFEM_NOT_IMPLEMENTED,
         "NOFIELD space for boundary filed not implemented in Simple interface");
   MoFEMFunctionReturn(0);
 }

◆ addDataField()

MoFEMErrorCode MoFEM::Simple::addDataField	(	const std::string	name,
		const FieldSpace	space,
		const FieldApproximationBase	base,
		const FieldCoefficientsNumber	nb_of_coefficients,
		const TagType	tag_type = `MB_TAG_SPARSE`,
		const enum MoFEMTypes	bh = `MF_ZERO`,
		int	verb = `-1`
	)

Add field on domain.

Parameters

name	name of the field
space	space (L2,H1,Hdiv,Hcurl)
base	approximation base, see FieldApproximationBase
nb_of_coefficients	number of field coefficients
tag_type	type of the tag MB_TAG_DENSE or MB_TAG_SPARSE (DENSE is faster and uses less memory, SPARSE is more flexible if you define field on subdomains)
bh	if MF_EXCL throws error if field exits, MF_ZERO no error if field exist
verb	verbosity level

Returns: error code

Examples: hcurl_curl_operator.cpp, and hdiv_divergence_operator.cpp.

Definition at line 396 of file Simple.cpp.

                                {
  
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
   CHKERR m_field.add_field(name, space, base, nb_of_coefficients, tag_type, bh,
                            verb);
   if (space == NOFIELD)
     noFieldDataFields.push_back(name);
   else
     dataFields.push_back(name);
   MoFEMFunctionReturn(0);
 }

◆ addDomainBrokenField()

MoFEMErrorCode MoFEM::Simple::addDomainBrokenField	(	const std::string	name,
		const FieldSpace	space,
		const FieldApproximationBase	base,
		const FieldCoefficientsNumber	nb_of_coefficients,
		const TagType	tag_type = `MB_TAG_SPARSE`,
		const enum MoFEMTypes	bh = `MF_ZERO`,
		int	verb = `-1`
	)

Add broken field on domain.

Parameters

name	name of the field
space	space (L2,H1,Hdiv,Hcurl)
base	approximation base, see FieldApproximationBase
nb_of_coefficients	number of field coefficients
tag_type	type of the tag MB_TAG_DENSE or MB_TAG_SPARSE (DENSE is faster and uses less memory, SPARSE is more flexible if you define field on subdomains)
bh	if MF_EXCL throws error if field exits, MF_ZERO no error if field exist
verb	verbosity level

Returns: error code

Definition at line 285 of file Simple.cpp.

                                        {
  
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
  
   auto get_side_map_hcurl = [&]() {
     return std::vector<
  
         std::pair<EntityType,
                   std::function<MoFEMErrorCode(BaseFunction::DofsSideMap &)>
  
                   >>{
  
         {MBTRI,
          [&](BaseFunction::DofsSideMap &dofs_side_map) -> MoFEMErrorCode {
            return TriPolynomialBase::setDofsSideMap(space, DISCONTINUOUS, base,
                                                     dofs_side_map);
          }}
  
     };
   };
  
   auto get_side_map_hdiv = [&]() {
     return std::vector<
  
         std::pair<EntityType,
                   std::function<MoFEMErrorCode(BaseFunction::DofsSideMap &)>
  
                   >>{
  
         {MBTET,
          [&](BaseFunction::DofsSideMap &dofs_side_map) -> MoFEMErrorCode {
            return TetPolynomialBase::setDofsSideMap(space, DISCONTINUOUS, base,
                                                     dofs_side_map);
          }}
  
     };
   };
  
   auto get_side_map = [&](auto space) {
     switch (space) {
     case HCURL:
       return get_side_map_hcurl();
     case HDIV:
       return get_side_map_hdiv();
     default:
       MOFEM_LOG_CHANNEL("WORLD");
       MOFEM_LOG("WORLD", Sev::warning)
           << "Side dof map for broken space <" << space << "> not implemented";
     }
     return std::vector<
  
         std::pair<EntityType,
                   std::function<MoFEMErrorCode(BaseFunction::DofsSideMap &)>
  
                   >>{};
   };
  
   CHKERR m_field.add_broken_field(name, space, base, nb_of_coefficients,
                                   get_side_map(space), tag_type, bh, verb);
   domainFields.push_back(name);
   if (space == NOFIELD)
     SETERRQ(
         PETSC_COMM_SELF, MOFEM_NOT_IMPLEMENTED,
         "NOFIELD space for boundary filed not implemented in Simple interface");
   MoFEMFunctionReturn(0);
 }

◆ addDomainField()

MoFEMErrorCode MoFEM::Simple::addDomainField	(	const std::string	name,
		const FieldSpace	space,
		const FieldApproximationBase	base,
		const FieldCoefficientsNumber	nb_of_coefficients,
		const TagType	tag_type = `MB_TAG_SPARSE`,
		const enum MoFEMTypes	bh = `MF_ZERO`,
		int	verb = `-1`
	)

Add field on domain.

Parameters

name	name of the field
space	space (L2,H1,Hdiv,Hcurl)
base	approximation base, see FieldApproximationBase
nb_of_coefficients	number of field coefficients
tag_type	type of the tag MB_TAG_DENSE or MB_TAG_SPARSE (DENSE is faster and uses less memory, SPARSE is more flexible if you define field on subdomains)
bh	if MF_EXCL throws error if field exits, MF_ZERO no error if field exist
verb	verbosity level

Returns: error code

Definition at line 264 of file Simple.cpp.

                                  {
  
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
   CHKERR m_field.add_field(name, space, base, nb_of_coefficients, tag_type, bh,
                            verb);
   domainFields.push_back(name);
   if (space == NOFIELD)
     SETERRQ(
         PETSC_COMM_SELF, MOFEM_NOT_IMPLEMENTED,
         "NOFIELD space for boundary filed not implemented in Simple interface");
  
  
   MoFEMFunctionReturn(0);
 }

◆ addFieldToEmptyFieldBlocks()

MoFEMErrorCode MoFEM::Simple::addFieldToEmptyFieldBlocks	(	const std::string	row_field,
		const std::string	col_field
	)		const

add empty block to problem

MatrixManager assumes that all blocks, i.e. all fields combinations are non zero. This is not always the case, to optimise code and reduce memory usage user can specifi which blocks are empty.

Parameters

row_field	row field name
col_field	col field name

Returns: MoFEMErrorCode

Definition at line 864 of file Simple.cpp.

                                                                     {
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
   CHKERR m_field.getInterface<ProblemsManager>()->addFieldToEmptyFieldBlocks(
       getProblemName(), row_field, col_field);
   MoFEMFunctionReturn(0);
 }

◆ addMeshsetField()

MoFEMErrorCode MoFEM::Simple::addMeshsetField	(	const std::string	name,
		const FieldSpace	space,
		const FieldApproximationBase	base,
		const FieldCoefficientsNumber	nb_of_coefficients,
		const TagType	tag_type = `MB_TAG_SPARSE`,
		const enum MoFEMTypes	bh = `MF_ZERO`,
		int	verb = `-1`
	)

Add meshset field.

Parameters

name
space
base
nb_of_coefficients
tag_type
bh
verb

Returns: MoFEMErrorCode

Examples: simple_interface.cpp, and simple_l2_only.cpp.

Definition at line 414 of file Simple.cpp.

                                   {
  
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
   CHKERR m_field.add_field(name, space, base, nb_of_coefficients, tag_type, bh,
                            verb);
   if (space != NOFIELD) {
     meshsetFields.push_back(name);
   } else {
     noFieldFields.push_back(name);
   }
   MoFEMFunctionReturn(0);
 }

◆ addSkeletonField()

MoFEMErrorCode MoFEM::Simple::addSkeletonField	(	const std::string	name,
		const FieldSpace	space,
		const FieldApproximationBase	base,
		const FieldCoefficientsNumber	nb_of_coefficients,
		const TagType	tag_type = `MB_TAG_SPARSE`,
		const enum MoFEMTypes	bh = `MF_ZERO`,
		int	verb = `-1`
	)

Add field on skeleton.

Parameters

name	name of the field
space	space (L2,H1,Hdiv,Hcurl)
base	approximation base, see FieldApproximationBase
nb_of_coefficients	number of field coefficients
tag_type	type of the tag MB_TAG_DENSE or MB_TAG_SPARSE (DENSE is faster and uses less memory, SPARSE is more flexible if you define field on subdomains)
bh	if MF_EXCL throws error if field exits, MF_ZERO no error if field exist
verb	verbosity level

Returns: error code

Examples: continuity_check_on_skeleton_with_simple_2d_for_h1.cpp, continuity_check_on_skeleton_with_simple_2d_for_hcurl.cpp, continuity_check_on_skeleton_with_simple_2d_for_hdiv.cpp, and simple_interface.cpp.

Definition at line 376 of file Simple.cpp.

                                    {
  
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
   CHKERR m_field.add_field(name, space, base, nb_of_coefficients, tag_type, bh,
                            verb);
   skeletonFields.push_back(name);
   if (space == NOFIELD)
     SETERRQ(
         PETSC_COMM_SELF, MOFEM_NOT_IMPLEMENTED,
         "NOFIELD space for boundary filed not implemented in Simple interface");
  
   MoFEMFunctionReturn(0);
 }

◆ buildFields()

MoFEMErrorCode MoFEM::Simple::buildFields ( )

Build fields.

Returns: error code

Examples: mesh_smoothing.cpp, and simple_elasticity.cpp.

Definition at line 608 of file Simple.cpp.

                                    {
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
   PetscLogEventBegin(MOFEM_EVENT_SimpleBuildFields, 0, 0, 0, 0);
  
   auto comm_interface_ptr = m_field.getInterface<CommInterface>();
   auto bit_ref_ptr = m_field.getInterface<BitRefManager>();
  
   // Add entities to the fields
   auto add_ents_to_field = [&](auto meshset, auto dim, auto &fields) {
     MoFEMFunctionBeginHot;
     for (auto &field : fields) {
       CHKERR m_field.add_ents_to_field_by_dim(meshset, dim, field);
       CHKERR comm_interface_ptr->synchroniseFieldEntities(field, 0);
     }
     MoFEMFunctionReturnHot(0);
   };
  
   auto make_no_field_ents = [&](auto &fields) {
     MoFEMFunctionBeginHot;
     for (auto &field : fields) {
       std::array<double, 6> coords = {0, 0, 0, 0, 0, 0};
       CHKERR m_field.create_vertices_and_add_to_field(field, coords.data(), 1);
       CHKERR comm_interface_ptr->makeFieldEntitiesMultishared(field, 0);
       CHKERR bit_ref_ptr->setFieldEntitiesBitRefLevel(field, bitLevel);
     }
     MoFEMFunctionReturnHot(0);
   };
  
   CHKERR add_ents_to_field(meshSet, dIm, domainFields);
   CHKERR add_ents_to_field(meshSet, dIm, dataFields);
   CHKERR add_ents_to_field(boundaryMeshset, dIm - 1, boundaryFields);
   CHKERR add_ents_to_field(skeletonMeshset, dIm - 1, skeletonFields);
  
   std::set<std::string> nofield_fields;
   for (auto &f : noFieldFields)
     nofield_fields.insert(f);
   for (auto &f : noFieldDataFields)
     nofield_fields.insert(f);
  
   CHKERR make_no_field_ents(nofield_fields);
  
   // Set order
  
   auto get_field_ptr = [&](auto &f) { return m_field.get_field_structure(f); };
   for (auto &t : fieldsOrder) {
     const auto f = std::get<0>(t);
     const auto order = std::get<1>(t);
  
     MOFEM_TAG_AND_LOG("WORLD", Sev::inform, "Simple")
         << "Set order to field " << f << " order " << order;
     MOFEM_LOG_CHANNEL("SYNC");
     if (std::get<3>(t)) {
       MOFEM_TAG_AND_LOG("SYNC", Sev::verbose, "Simple")
           << "To ents: " << std::endl
           << std::get<2>(t) << std::endl;
     }
     MOFEM_LOG_SEVERITY_SYNC(m_field.get_comm(), Sev::verbose);
  
     if (std::get<3>(t)) {
  
       CHKERR m_field.set_field_order(std::get<2>(t), f, order);
  
     } else {
       auto f_ptr = get_field_ptr(f);
  
       if (f_ptr->getSpace() == H1) {
         if (f_ptr->getApproxBase() == AINSWORTH_BERNSTEIN_BEZIER_BASE) {
           CHKERR m_field.set_field_order(meshSet, MBVERTEX, f, order);
         } else {
           CHKERR m_field.set_field_order(meshSet, MBVERTEX, f, 1);
         }
       }
  
       for (auto d = 1; d <= dIm; ++d) {
         for (EntityType t = CN::TypeDimensionMap[d].first;
              t <= CN::TypeDimensionMap[d].second; ++t) {
           CHKERR m_field.set_field_order(meshSet, t, f, order);
         }
       }
     }
   }
   MOFEM_LOG_CHANNEL("WORLD");
   // Build fields
   CHKERR m_field.build_fields();
   PetscLogEventEnd(MOFEM_EVENT_SimpleBuildFields, 0, 0, 0, 0);
   MoFEMFunctionReturn(0);
 }

◆ buildFiniteElements()

MoFEMErrorCode MoFEM::Simple::buildFiniteElements ( )

Build finite elements.

Returns: error code

Examples: mesh_smoothing.cpp, and simple_elasticity.cpp.

Definition at line 697 of file Simple.cpp.

                                            {
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
   PetscLogEventBegin(MOFEM_EVENT_SimpleBuildFiniteElements, 0, 0, 0, 0);
   // Add finite elements
   CHKERR m_field.add_ents_to_finite_element_by_dim(meshSet, dIm, domainFE,
                                                    true);
   CHKERR m_field.build_finite_elements(domainFE);
   if (addBoundaryFE || boundaryFields.size()) {
     CHKERR m_field.add_ents_to_finite_element_by_dim(boundaryMeshset, dIm - 1,
                                                      boundaryFE, true);
     CHKERR m_field.build_finite_elements(boundaryFE);
   }
   if (addSkeletonFE || skeletonFields.size()) {
     CHKERR m_field.add_ents_to_finite_element_by_dim(skeletonMeshset, dIm - 1,
                                                      skeletonFE, true);
     CHKERR m_field.build_finite_elements(skeletonFE);
   }
  
   if (noFieldFields.size() || meshsetFields.size()) {
     auto add_fields_ents = [&](auto list) {
       MoFEMFunctionBegin;
       auto fe_meshset = m_field.get_finite_element_meshset(meshsetFE);
       for (auto &fe_ents : meshsetFiniteElementEntities) {
         EntityHandle meshset_entity_fe;
         CHKERR m_field.get_moab().create_meshset(MESHSET_SET,
                                                  meshset_entity_fe);
         CHKERR m_field.getInterface<BitRefManager>()->setBitLevelToMeshset(
             meshset_entity_fe, BitRefLevel().set());
         for (auto f : list) {
           auto field_meshset = m_field.get_field_meshset(f);
           Range ents;
           CHKERR m_field.get_moab().get_entities_by_handle(field_meshset, ents,
                                                            true);
           CHKERR m_field.get_moab().add_entities(meshset_entity_fe, ents);
         }
         CHKERR m_field.get_moab().add_entities(meshset_entity_fe, fe_ents);
         CHKERR m_field.get_moab().add_entities(fe_meshset, &meshset_entity_fe,
                                                1);
       }
       MoFEMFunctionReturn(0);
     };
     CHKERR add_fields_ents(noFieldFields);
     CHKERR m_field.build_finite_elements(meshsetFE);
   }
  
   for (std::vector<std::string>::iterator fit = otherFEs.begin();
        fit != otherFEs.end(); ++fit) {
     CHKERR m_field.build_finite_elements(*fit);
   }
   PetscLogEventEnd(MOFEM_EVENT_SimpleBuildFiniteElements, 0, 0, 0, 0);
   MoFEMFunctionReturn(0);
 }

◆ buildProblem()

MoFEMErrorCode MoFEM::Simple::buildProblem ( )

Build problem.

Returns: error code

Examples: mesh_smoothing.cpp, and simple_elasticity.cpp.

Definition at line 751 of file Simple.cpp.

                                     {
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
   PetscLogEventBegin(MOFEM_EVENT_SimpleBuildProblem, 0, 0, 0, 0);
   CHKERR m_field.build_adjacencies(bitLevel, bitLevelMask);
   // Set problem by the DOFs on the fields rather that by adding DOFs on the
   // elements
   m_field.getInterface<ProblemsManager>()->buildProblemFromFields = PETSC_TRUE;
   CHKERR DMSetUp_MoFEM(dM);
   m_field.getInterface<ProblemsManager>()->buildProblemFromFields = PETSC_FALSE;
   PetscLogEventEnd(MOFEM_EVENT_SimpleBuildProblem, 0, 0, 0, 0);
   MoFEMFunctionReturn(0);
 }

◆ createBoundaryMeshset()

MoFEMErrorCode MoFEM::Simple::createBoundaryMeshset ( )

private

Definition at line 873 of file Simple.cpp.

                                              {
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
   ParallelComm *pcomm =
       ParallelComm::get_pcomm(&m_field.get_moab(), MYPCOMM_INDEX);
  
   auto get_skin = [&](auto meshset) {
     // filter not owned entities, those are not on boundary
  
     Range domain_ents;
     CHKERR m_field.get_moab().get_entities_by_dimension(meshset, dIm,
                                                         domain_ents, true);
     CHKERR pcomm->filter_pstatus(domain_ents,
                                  PSTATUS_SHARED | PSTATUS_MULTISHARED,
                                  PSTATUS_NOT, -1, nullptr);
  
     Skinner skin(&m_field.get_moab());
     Range domain_skin;
     CHKERR skin.find_skin(0, domain_ents, false, domain_skin);
     CHKERR pcomm->filter_pstatus(domain_skin,
                                  PSTATUS_SHARED | PSTATUS_MULTISHARED,
                                  PSTATUS_NOT, -1, nullptr);
     return domain_skin;
   };
  
   auto create_boundary_meshset = [&](auto &&domain_skin) {
     MoFEMFunctionBeginHot;
     // create boundary meshset
     if (boundaryMeshset != 0) {
       MoFEMFunctionReturnHot(0);
     }
     CHKERR m_field.get_moab().create_meshset(MESHSET_SET, boundaryMeshset);
     CHKERR m_field.get_moab().add_entities(boundaryMeshset, domain_skin);
     for (int dd = 0; dd != dIm - 1; dd++) {
       Range adj;
       CHKERR m_field.get_moab().get_adjacencies(domain_skin, dd, false, adj,
                                                 moab::Interface::UNION);
       CHKERR m_field.get_moab().add_entities(boundaryMeshset, adj);
     }
     MoFEMFunctionReturnHot(0);
   };
  
   CHKERR create_boundary_meshset(get_skin(meshSet));
  
   MoFEMFunctionReturn(0);
 }

◆ createSkeletonMeshset()

MoFEMErrorCode MoFEM::Simple::createSkeletonMeshset ( )

private

Definition at line 920 of file Simple.cpp.

                                              {
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
  
   ParallelComm *pcomm =
       ParallelComm::get_pcomm(&m_field.get_moab(), MYPCOMM_INDEX);
  
   auto create_skeleton_meshset = [&](auto meshset) {
     MoFEMFunctionBeginHot;
     // create boundary meshset
     if (skeletonMeshset != 0) {
       MoFEMFunctionReturnHot(0);
     }
     Range boundary_ents, skeleton_ents;
     CHKERR m_field.get_moab().get_entities_by_dimension(boundaryMeshset,
                                                         dIm - 1, boundary_ents);
     Range domain_ents;
     CHKERR m_field.get_moab().get_entities_by_dimension(meshset, dIm,
                                                         domain_ents, true);
     CHKERR m_field.get_moab().get_adjacencies(
         domain_ents, dIm - 1, true, skeleton_ents, moab::Interface::UNION);
     skeleton_ents = subtract(skeleton_ents, boundary_ents);
     CHKERR pcomm->filter_pstatus(skeleton_ents, PSTATUS_NOT_OWNED, PSTATUS_NOT,
                                  -1, nullptr);
     CHKERR m_field.get_moab().create_meshset(MESHSET_SET, skeletonMeshset);
     CHKERR m_field.get_moab().add_entities(skeletonMeshset, skeleton_ents);
     MoFEMFunctionReturnHot(0);
   };
  
   CHKERR create_skeleton_meshset(meshSet);
  
   MoFEMFunctionReturn(0);
 }

◆ defaultLoadFileFunc()

static MoFEMErrorCode MoFEM::Simple::defaultLoadFileFunc	(	Interface &	m_field,
		const char *	file_name,
		const char *	options
	)

inlinestatic

Set function for loading mesh file.

Parameters

m_field	interface
file_name	file name
options	loader options

Returns: error code

Definition at line 51 of file Simple.hpp.

                                                                  {
     // Default behavior using the member moab.load_file
     return m_field.get_moab().load_file(file_name, 0, options);
   }

◆ defineFiniteElements()

MoFEMErrorCode MoFEM::Simple::defineFiniteElements ( )

Define finite elements.

Returns: Error code

Examples: mesh_smoothing.cpp, and simple_elasticity.cpp.

Definition at line 474 of file Simple.cpp.

                                             {
   Interface &m_field = cOre;
   MoFEMFunctionBeginHot;
  
   auto clear_rows_and_cols = [&](auto &fe_name) {
     MoFEMFunctionBeginHot;
     auto fe_ptr = m_field.get_finite_elements();
     auto &fe_by_name = const_cast<FiniteElement_multiIndex *>(fe_ptr)
                            ->get<FiniteElement_name_mi_tag>();
     auto it_fe = fe_by_name.find(fe_name);
     if (it_fe != fe_by_name.end()) {
  
       if (!fe_by_name.modify(it_fe, FiniteElement_row_change_bit_reset()))
         SETERRQ(m_field.get_comm(), MOFEM_OPERATION_UNSUCCESSFUL,
                 "modification unsuccessful");
  
       if (!fe_by_name.modify(it_fe, FiniteElement_col_change_bit_reset()))
         SETERRQ(m_field.get_comm(), MOFEM_OPERATION_UNSUCCESSFUL,
                 "modification unsuccessful");
     }
     MoFEMFunctionReturnHot(0);
   };
   CHKERR clear_rows_and_cols(domainFE);
   CHKERR clear_rows_and_cols(boundaryFE);
   CHKERR clear_rows_and_cols(skeletonFE);
  
   // Define finite elements
   CHKERR m_field.add_finite_element(domainFE, MF_ZERO);
  
   auto add_fields = [&](auto &fe_name, auto &fields) {
     MoFEMFunctionBeginHot;
     for (auto &field : fields) {
       CHKERR m_field.modify_finite_element_add_field_row(fe_name, field);
       CHKERR m_field.modify_finite_element_add_field_col(fe_name, field);
       CHKERR m_field.modify_finite_element_add_field_data(fe_name, field);
     }
     MoFEMFunctionReturnHot(0);
   };
  
   auto add_data_fields = [&](auto &fe_name, auto &fields) {
     MoFEMFunctionBeginHot;
     for (auto &field : fields)
       CHKERR m_field.modify_finite_element_add_field_data(fe_name, field);
     MoFEMFunctionReturnHot(0);
   };
  
   CHKERR add_fields(domainFE, domainFields);
   CHKERR add_data_fields(domainFE, dataFields);
   CHKERR add_fields(domainFE, noFieldFields);
   CHKERR add_data_fields(domainFE, noFieldDataFields);
  
   if (addBoundaryFE || !boundaryFields.empty()) {
     CHKERR m_field.add_finite_element(boundaryFE, MF_ZERO);
     CHKERR add_fields(boundaryFE, domainFields);
     if (!boundaryFields.empty())
       CHKERR add_fields(boundaryFE, boundaryFields);
     CHKERR add_data_fields(boundaryFE, dataFields);
     CHKERR add_data_fields(boundaryFE, noFieldDataFields);
     CHKERR add_fields(boundaryFE, noFieldFields);
   }
   if (addSkeletonFE || !skeletonFields.empty()) {
     CHKERR m_field.add_finite_element(skeletonFE, MF_ZERO);
     CHKERR add_fields(skeletonFE, domainFields);
     if (!skeletonFields.empty())
       CHKERR add_fields(skeletonFE, skeletonFields);
     CHKERR add_data_fields(skeletonFE, dataFields);
     CHKERR add_data_fields(skeletonFE, noFieldDataFields);
     CHKERR add_fields(skeletonFE, noFieldFields);
   }
  
   if (noFieldFields.size() || meshsetFields.size()) {
     CHKERR m_field.add_finite_element(meshsetFE, MF_ZERO);
  
     auto create_meshset = [&]() {
       EntityHandle fe_meshset;
       auto create = [&]() {
         MoFEMFunctionBegin;
         CHKERR m_field.get_moab().create_meshset(MESHSET_SET, fe_meshset);
         {
           EntityHandle meshset;
           CHKERR m_field.get_moab().create_meshset(MESHSET_SET, meshset);
           CHKERR m_field.getInterface<BitRefManager>()->setBitLevelToMeshset(
               meshset, BitRefLevel().set());
         }
         MoFEMFunctionReturn(0);
       };
       CHK_THROW_MESSAGE(create(), "Failed to create meshset");
       return fe_meshset;
     };
  
     CHKERR m_field.add_ents_to_finite_element_by_MESHSET(create_meshset(),
                                                          meshsetFE, false);
  
     CHKERR add_fields(meshsetFE, meshsetFields);
     CHKERR add_fields(meshsetFE, noFieldFields);
     CHKERR add_data_fields(meshsetFE, noFieldDataFields);
   }
  
   MoFEMFunctionReturnHot(0);
 }

◆ defineProblem()

MoFEMErrorCode MoFEM::Simple::defineProblem ( const PetscBool is_partitioned = PETSC_TRUE )

define problem

Returns: error code

Examples: mesh_smoothing.cpp, and simple_elasticity.cpp.

Definition at line 575 of file Simple.cpp.

                                                                    {
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
   // Create dm instance
   dM = createDM(m_field.get_comm(), "DMMOFEM");
   // set dm data structure which created mofem data structures
   CHKERR DMMoFEMCreateMoFEM(dM, &m_field, nameOfProblem.c_str(), bitLevel,
                             bitLevelMask);
   CHKERR DMSetFromOptions(dM);
   CHKERR DMMoFEMAddElement(dM, domainFE);
   if (addBoundaryFE || !boundaryFields.empty()) {
     CHKERR DMMoFEMAddElement(dM, boundaryFE);
   }
   if (addSkeletonFE || !skeletonFields.empty()) {
     CHKERR DMMoFEMAddElement(dM, skeletonFE);
   }
   if (noFieldFields.size() || meshsetFields.size()) {
     CHKERR DMMoFEMAddElement(dM, meshsetFE);
   }
   CHKERR DMMoFEMAddElement(dM, otherFEs);
   CHKERR DMMoFEMSetIsPartitioned(dM, is_partitioned);
   MoFEMFunctionReturn(0);
 }

◆ deleteDM()

MoFEMErrorCode MoFEM::Simple::deleteDM ( )

Delete dm.

Returns: MoFEMErrorCode

Definition at line 841 of file Simple.cpp.

                                 {
   MoFEMFunctionBegin;
   dM.reset();
   MoFEMFunctionReturn(0);
 }

◆ deleteFiniteElements()

MoFEMErrorCode MoFEM::Simple::deleteFiniteElements ( )

Delete finite elements.

Returns: MoFEMErrorCode

Definition at line 852 of file Simple.cpp.

                                             {
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
   for (auto fe : {domainFE, boundaryFE, skeletonFE}) {
     if (m_field.check_finite_element(fe)) {
       CHKERR m_field.delete_finite_element(fe);
     }
   }
   MoFEMFunctionReturn(0);
 }

◆ exchangeGhostCells()

MoFEMErrorCode MoFEM::Simple::exchangeGhostCells ( )

private

get all adjacent ghosted entities

Definition at line 954 of file Simple.cpp.

                                           {
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
   MOFEM_LOG("WORLD", Sev::verbose) << "Exchange ghost cells";
  
   ParallelComm *pcomm =
       ParallelComm::get_pcomm(&m_field.get_moab(), MYPCOMM_INDEX);
   if (pcomm == NULL)
     pcomm = new ParallelComm(&m_field.get_moab(), m_field.get_comm());
  
   CHKERR pcomm->exchange_ghost_cells(getDim(), getDim() - 1, 1,
                                      3 /**get all adjacent ghosted entities */,
                                      true, true, meshSet ? &meshSet : nullptr);
  
   Range shared;
   CHKERR m_field.get_moab().get_entities_by_dimension(0, dIm, shared);
   for (auto d = dIm - 1; d >= 0; --d) {
     CHKERR m_field.get_moab().get_adjacencies(shared, d, false, shared,
                                               moab::Interface::UNION);
   }
   CHKERR pcomm->filter_pstatus(shared, PSTATUS_SHARED | PSTATUS_MULTISHARED,
                                PSTATUS_OR, -1, &shared);
   Tag part_tag = pcomm->part_tag();
   CHKERR pcomm->exchange_tags(part_tag, shared);
   CHKERR m_field.getInterface<CommInterface>()->resolveParentEntities(shared,
                                                                       VERBOSE);
  
   MoFEMFunctionReturn(0);
 }

◆ getAddBoundaryFE()

bool& MoFEM::Simple::getAddBoundaryFE ( )

inline

Get the addSkeletonFE.

If variable set to true, boundary element is created regardless field on skelton is added or not.

Returns: true; false

Examples: poisson_2d_dis_galerkin.cpp, and simple_l2_only.cpp.

Definition at line 498 of file Simple.hpp.

498 { return addBoundaryFE; }

◆ getAddSkeletonFE()

bool& MoFEM::Simple::getAddSkeletonFE ( )

inline

Get the addSkeletonFE.

If variable set to true, skeleton element is created regardless field on skelton is added or not.

Returns: true; false

Examples: continuity_check_on_skeleton_with_simple_2d_for_h1.cpp, poisson_2d_dis_galerkin.cpp, and simple_l2_only.cpp.

Definition at line 487 of file Simple.hpp.

487 { return addSkeletonFE; }

◆ getBitAdjEnt()

auto& MoFEM::Simple::getBitAdjEnt ( )

inline

bit ref level for parent

Returns: auto&

Definition at line 529 of file Simple.hpp.

529 { return bitAdjEnt; }

◆ getBitAdjEntMask()

auto& MoFEM::Simple::getBitAdjEntMask ( )

inline

bit ref level for parent parent

Returns: auto&

Definition at line 536 of file Simple.hpp.

536 { return bitAdjEntMask; }

◆ getBitAdjParent()

auto& MoFEM::Simple::getBitAdjParent ( )

inline

bit ref level for parent

Returns: auto&

Definition at line 515 of file Simple.hpp.

515 { return bitAdjParent; }

◆ getBitAdjParentMask()

auto& MoFEM::Simple::getBitAdjParentMask ( )

inline

bit ref level for parent parent

Returns: auto&

Definition at line 522 of file Simple.hpp.

522 { return bitAdjParentMask; }

◆ getBitRefLevel()

BitRefLevel& MoFEM::Simple::getBitRefLevel ( )

inline

Get the BitRefLevel.

Returns: BitRefLevel

Examples: child_and_parent.cpp, level_set.cpp, and mixed_poisson.cpp.

Definition at line 373 of file Simple.hpp.

373 { return bitLevel; }

◆ getBitRefLevelMask()

BitRefLevel& MoFEM::Simple::getBitRefLevelMask ( )

inline

Get the BitRefLevel.

Returns: BitRefLevel

Examples: child_and_parent.cpp.

Definition at line 380 of file Simple.hpp.

380 { return bitLevelMask; }

◆ getBoundaryFEName() [1/2]

std::string& MoFEM::Simple::getBoundaryFEName ( )

inline

Get the Boundary FE Name.

Returns: std::string&

Definition at line 422 of file Simple.hpp.

422 { return boundaryFE; }

◆ getBoundaryFEName() [2/2]

const std::string MoFEM::Simple::getBoundaryFEName ( ) const

inline

Get the Boundary FE Name.

Returns: const std::string

Examples: mesh_smoothing.cpp, and simple_interface.cpp.

Definition at line 394 of file Simple.hpp.

394 { return boundaryFE; }

◆ getBoundaryMeshSet()

EntityHandle& MoFEM::Simple::getBoundaryMeshSet ( )

inline

Get the BoundaryMeshSet object.

Returns: EntityHandle&

Definition at line 359 of file Simple.hpp.

359 { return boundaryMeshset; }

◆ getDim()

int MoFEM::Simple::getDim ( ) const

inline

Get the problem dimension.

Problem dimension is determined by highest dimension of entities on the mesh.

Returns: int

Examples: child_and_parent.cpp, and field_evaluator.cpp.

Definition at line 331 of file Simple.hpp.

331 { return dIm; }

◆ getDM() [1/2]

SmartPetscObj<DM> MoFEM::Simple::getDM ( )

inline

Return smart DM object.

{
   auto dm  = simple_interface->getDM();
 
   // ...
 
   // dm is automatically destroyed when out of the scope
}

Returns: SmartPetscObj<DM>

Definition at line 321 of file Simple.hpp.

321 { return dM; }

◆ getDM() [2/2]

MoFEMErrorCode MoFEM::Simple::getDM ( DM * dm )

Get DM.

Parameters

dm	discrete manager

Returns: error code

Examples: child_and_parent.cpp, continuity_check_on_skeleton_with_simple_2d_for_h1.cpp, continuity_check_on_skeleton_with_simple_2d_for_hcurl.cpp, continuity_check_on_skeleton_with_simple_2d_for_hdiv.cpp, field_evaluator.cpp, hcurl_check_approx_in_2d.cpp, helmholtz.cpp, loop_entities.cpp, mesh_smoothing.cpp, mixed_poisson.cpp, poisson_2d_dis_galerkin.cpp, poisson_2d_homogeneous.cpp, reaction_diffusion.cpp, simple_elasticity.cpp, simple_interface.cpp, test_cache_on_entities.cpp, testing_jacobian_of_hook_element.cpp, and testing_jacobian_of_hook_scaled_with_density_element.cpp.

Definition at line 829 of file Simple.cpp.

                                    {
   MoFEMFunctionBegin;
   CHKERR PetscObjectReference(getPetscObject(dM.get()));
   *dm = dM.get();
   MoFEMFunctionReturn(0);
 }

◆ getDomainFEName() [1/2]

std::string& MoFEM::Simple::getDomainFEName ( )

inline

Get the Domain FE Name.

Returns: std::string&

Definition at line 415 of file Simple.hpp.

415 { return domainFE; }

◆ getDomainFEName() [2/2]

const std::string MoFEM::Simple::getDomainFEName ( ) const

inline

Get the Domain FE Name.

Returns: const std::string

Examples: field_evaluator.cpp, mesh_smoothing.cpp, poisson_2d_homogeneous.cpp, reaction_diffusion.cpp, simple_elasticity.cpp, simple_interface.cpp, simple_l2_only.cpp, test_cache_on_entities.cpp, testing_jacobian_of_hook_element.cpp, and testing_jacobian_of_hook_scaled_with_density_element.cpp.

Definition at line 387 of file Simple.hpp.

387 { return domainFE; }

◆ getMeshSet()

DEPRECATED EntityHandle& MoFEM::Simple::getMeshSet ( )

inline

Deprecated:: Use getMeshset

Returns: EntityHandle&

Definition at line 345 of file Simple.hpp.

345 { return meshSet; }

◆ getMeshset()

EntityHandle& MoFEM::Simple::getMeshset ( )

inline

Get the MeshSet object.

Returns: EntityHandle&

Definition at line 352 of file Simple.hpp.

352 { return meshSet; }

◆ getMeshsetFEName()

std::string& MoFEM::Simple::getMeshsetFEName ( )

inline

Get the Skeleton FE Name.

Returns: std::string&

Examples: simple_interface.cpp.

Definition at line 436 of file Simple.hpp.

436 { return meshsetFE; }

◆ getMeshsetFiniteElementEntities()

auto& MoFEM::Simple::getMeshsetFiniteElementEntities ( )

inline

Get the Domain Fields.

Returns: std::vector<std::string>&

Examples: simple_interface.cpp, and simple_l2_only.cpp.

Definition at line 443 of file Simple.hpp.

                                                  {
     return meshsetFiniteElementEntities;
   }

◆ getOptions()

MoFEMErrorCode MoFEM::Simple::getOptions ( )

get options

Returns: error code

Definition at line 180 of file Simple.cpp.

                                   {
   PetscBool flg = PETSC_TRUE;
   MoFEMFunctionBeginHot;
   ierr = PetscOptionsBegin(PETSC_COMM_WORLD, "", "Simple interface options",
                            "none");
   CHKERRG(ierr);
   ierr = PetscOptionsString("-file_name", "file name", "", "mesh.h5m",
                             meshFileName, 255, &flg);
   CHKERRG(ierr);
   ierr = PetscOptionsEnd();
   CHKERRG(ierr);
   MoFEMFunctionReturnHot(0);
 }

◆ getOtherFiniteElements()

std::vector<std::string>& MoFEM::Simple::getOtherFiniteElements ( )

inline

Get the Other Finite Elements.

User can create finite elements using directly core interface and and them to simple problem by this function

Returns: std::vector<std::string>&

Examples: mesh_smoothing.cpp.

Definition at line 462 of file Simple.hpp.

462 { return otherFEs; }

◆ getParentAdjacencies()

bool& MoFEM::Simple::getParentAdjacencies ( )

inline

Get the addParentAdjacencies.

If set true add parent adjacencies

Returns: true; false

Definition at line 508 of file Simple.hpp.

508 { return addParentAdjacencies; }

◆ getProblemName() [1/2]

std::string& MoFEM::Simple::getProblemName ( )

inline

Get the Problem Name.

Returns: std::string&

Definition at line 452 of file Simple.hpp.

452 { return nameOfProblem; }

◆ getProblemName() [2/2]

const std::string MoFEM::Simple::getProblemName ( ) const

inline

Get the Problem Name.

Returns: const std::string

Examples: child_and_parent.cpp, poisson_2d_homogeneous.cpp, reaction_diffusion.cpp, and test_cache_on_entities.cpp.

Definition at line 408 of file Simple.hpp.

408 { return nameOfProblem; }

◆ getSkeletonFEName() [1/2]

std::string& MoFEM::Simple::getSkeletonFEName ( )

inline

Get the Skeleton FE Name.

Returns: std::string&

Definition at line 429 of file Simple.hpp.

429 { return skeletonFE; }

◆ getSkeletonFEName() [2/2]

const std::string MoFEM::Simple::getSkeletonFEName ( ) const

inline

Get the Skeleton FE Name.

Returns: const std::string

Examples: continuity_check_on_skeleton_with_simple_2d_for_h1.cpp, continuity_check_on_skeleton_with_simple_2d_for_hcurl.cpp, continuity_check_on_skeleton_with_simple_2d_for_hdiv.cpp, and simple_interface.cpp.

Definition at line 401 of file Simple.hpp.

401 { return skeletonFE; }

◆ getSkeletonMeshSet()

EntityHandle& MoFEM::Simple::getSkeletonMeshSet ( )

inline

Get the SkeletonMeshSet object.

Returns: EntityHandle&

Definition at line 366 of file Simple.hpp.

366 { return skeletonMeshset; }

◆ loadFile() [1/2]

MoFEMErrorCode MoFEM::Simple::loadFile ( const std::string mesh_file_name = "" )

Load mesh file with parallel options if number of cores > 1.

Parameters

mesh_file_name file name if not set default or set by command line is used.

Returns: error code

Definition at line 250 of file Simple.cpp.

                                                               {
   MoFEMFunctionBegin;
   Interface &m_field = cOre;
   if (m_field.get_comm_size() == 1)
     CHKERR loadFile("", meshFileName);
   else
     CHKERR loadFile("PARALLEL=READ_PART;"
                     "PARALLEL_RESOLVE_SHARED_ENTS;"
                     "PARTITION=PARALLEL_PARTITION;",
                     meshFileName);
   MoFEMFunctionReturn(0);
 }

◆ loadFile() [2/2]

MoFEMErrorCode MoFEM::Simple::loadFile	(	const std::string	options,
		const std::string	mesh_file_name,
		LoadFileFunc	loadFunc = `defaultLoadFileFunc`
	)

Load mesh file.

Parameters

options	file load options
mesh_file_name	file name if not set default or set by command line
loadFunc	function for loading mesh file is used.

Note: If bitRefLevel is set to any, bit ref level of loaded entities is not changed. After mesh is load, bit ref level should be set to create problem. Default setting of bit ref level is on first bit, and if is set all mesh entities on load are set to set level.

Returns: error code

Definition at line 194 of file Simple.cpp.

                                                        {
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
   PetscLogEventBegin(MOFEM_EVENT_SimpleLoadMesh, 0, 0, 0, 0);
  
   if (!mesh_file_name.empty())
     strcpy(meshFileName, mesh_file_name.c_str());
  
   // Invoke the boost function, passing in required arguments
   CHKERR loadFunc(m_field, meshFileName, options.c_str());
   CHKERR m_field.rebuild_database();
  
   // determine problem dimension
   if (dIm == -1) {
     int nb_ents_3d;
     CHKERR m_field.get_moab().get_number_entities_by_dimension(
         meshSet, 3, nb_ents_3d, true);
     if (nb_ents_3d > 0) {
       dIm = 3;
     } else {
       int nb_ents_2d;
       CHKERR m_field.get_moab().get_number_entities_by_dimension(
           meshSet, 2, nb_ents_2d, true);
       if (nb_ents_2d > 0) {
         dIm = 2;
       } else {
         dIm = 1;
       }
     }
   }
  
   if (!boundaryMeshset)
     CHKERR createBoundaryMeshset();
   if (!skeletonMeshset)
     CHKERR createSkeletonMeshset();
   if (addSkeletonFE)
     CHKERR exchangeGhostCells();
  
   if (bitLevel.any()) {
     Range ents;
     CHKERR m_field.get_moab().get_entities_by_dimension(meshSet, dIm, ents,
                                                         true);
     CHKERR m_field.getInterface<BitRefManager>()->setBitRefLevel(ents, bitLevel,
                                                                  false);
   } else {
     MOFEM_LOG("WORLD", Sev::warning) << "BitRefLevel is none and not set";
     CHKERR m_field.getInterface<BitRefManager>()->addToDatabaseBitRefLevelByDim(
         dIm, BitRefLevel().set(), BitRefLevel().set());
   }
  
   PetscLogEventEnd(MOFEM_EVENT_SimpleLoadMesh, 0, 0, 0, 0);
   MoFEMFunctionReturn(0);
 }

◆ query_interface()

MoFEMErrorCode MoFEM::Simple::query_interface	(	boost::typeindex::type_index	type_index,
		UnknownInterface **	iface
	)		const

virtual

Implements MoFEM::UnknownInterface.

Definition at line 8 of file Simple.cpp.

                                                                        {
   *iface = const_cast<Simple *>(this);
   return 0;
 }

◆ removeBoundaryField()

MoFEMErrorCode MoFEM::Simple::removeBoundaryField ( const std::string name )

Remove field form boundary.

Parameters

name

Returns: MoFEMErrorCode

Definition at line 446 of file Simple.cpp.

                                                                {
   MoFEMFunctionBegin;
  
   auto remove_field_from_list = [&](auto &vec) {
     auto it = std::find(vec.begin(), vec.end(), name);
     if (it != vec.end())
       vec.erase(it);
   };
  
   remove_field_from_list(boundaryFields);
  
   MoFEMFunctionReturn(0);
 }

◆ removeDomainField()

MoFEMErrorCode MoFEM::Simple::removeDomainField ( const std::string name )

Remove field form domain.

Parameters

name

Returns: MoFEMErrorCode

Definition at line 432 of file Simple.cpp.

                                                              {
   MoFEMFunctionBegin;
  
   auto remove_field_from_list = [&](auto &vec) {
     auto it = std::find(vec.begin(), vec.end(), name);
     if (it != vec.end())
       vec.erase(it);
   };
  
   remove_field_from_list(domainFields);
  
   MoFEMFunctionReturn(0);
 }

◆ removeSkeletonField()

MoFEMErrorCode MoFEM::Simple::removeSkeletonField ( const std::string name )

Remove field form skeleton.

Parameters

name

Returns: MoFEMErrorCode

Definition at line 460 of file Simple.cpp.

                                                                {
   MoFEMFunctionBegin;
  
   auto remove_field_from_list = [&](auto &vec) {
     auto it = std::find(vec.begin(), vec.end(), name);
     if (it != vec.end())
       vec.erase(it);
   };
  
   remove_field_from_list(skeletonFields);
  
   MoFEMFunctionReturn(0);
 }

◆ reSetUp()

MoFEMErrorCode MoFEM::Simple::reSetUp ( bool only_dm = false )

Rebuild internal MoFEM data structures.

Call this function after you add field or remove it.

Note: If you add field, or remove it, finite element and problem needs to be rebuild. However DM can remain the same.

Returns: MoFEMErrorCode

Examples: child_and_parent.cpp.

Definition at line 791 of file Simple.cpp.

                                            {
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
   PetscLogEventBegin(MOFEM_EVENT_SimpleBuildProblem, 0, 0, 0, 0);
  
   if (!only_dm) {
     CHKERR defineFiniteElements();
     CHKERR buildFields();
     if (addSkeletonFE || !skeletonFields.empty()) {
       CHKERR setSkeletonAdjacency(-1, skeletonFE);
       if (addBoundaryFE || !boundaryFields.empty()) {
         CHKERR setSkeletonAdjacency(-1, boundaryFE);
       }
     }
     if (addParentAdjacencies)
       CHKERR setParentAdjacency();
     CHKERR buildFiniteElements();
   }
  
   CHKERR m_field.build_adjacencies(bitLevel, bitLevelMask);
  
   const Problem *problem_ptr;
   CHKERR DMMoFEMGetProblemPtr(dM, &problem_ptr);
   const auto problem_name = problem_ptr->getName();
   CHKERR m_field.modify_problem_ref_level_set_bit(problem_name, bitLevel);
   CHKERR m_field.modify_problem_mask_ref_level_set_bit(problem_name,
                                                        bitLevelMask);
  
   // Set problem by the DOFs on the fields rather that by adding DOFs on the
   // elements
   m_field.getInterface<ProblemsManager>()->buildProblemFromFields = PETSC_TRUE;
   CHKERR DMSetUp_MoFEM(dM);
   m_field.getInterface<ProblemsManager>()->buildProblemFromFields = PETSC_FALSE;
  
   PetscLogEventEnd(MOFEM_EVENT_SimpleBuildProblem, 0, 0, 0, 0);
   MoFEMFunctionReturn(0);
 }

◆ setDim()

void MoFEM::Simple::setDim ( int dim )

inline

Set the problem dimension.

Returns: int

Definition at line 338 of file Simple.hpp.

338 { dIm = dim; };

◆ setFieldOrder()

MoFEMErrorCode MoFEM::Simple::setFieldOrder	(	const std::string	field_name,
		const int	order,
		const Range *	ents = `NULL`
	)

Set field order.

Parameters

std::field_name	field name
order	order
range	of entities to which order is set (If null it sat to all entities)

Returns: error code

Definition at line 599 of file Simple.cpp.

                                                                          {
   MoFEMFunctionBeginHot;
   fieldsOrder.emplace_back(field_name, order,
                            ents == NULL ? Range() : Range(*ents),
                            ents == NULL ? false : true);
   MoFEMFunctionReturnHot(0);
 }

◆ setParentAdjacency() [1/4]

template<>

MoFEMErrorCode MoFEM::Simple::setParentAdjacency ( )

private

Definition at line 72 of file Simple.cpp.

                                                          {
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
  
   parentAdjFunctionDim3 =
       boost::make_shared<ParentFiniteElementAdjacencyFunction<3>>(
           bitAdjParent, bitAdjParentMask, bitAdjEnt, bitAdjEntMask);
   parentAdjFunctionDim2 =
       boost::make_shared<ParentFiniteElementAdjacencyFunction<2>>(
           bitAdjParent, bitAdjParentMask, bitAdjEnt, bitAdjEntMask);
  
   CHKERR m_field.modify_finite_element_adjacency_table(domainFE, MBTET,
                                                        *parentAdjFunctionDim3);
   CHKERR m_field.modify_finite_element_adjacency_table(domainFE, MBHEX,
                                                        *parentAdjFunctionDim3);
   if (addBoundaryFE || !boundaryFields.empty()) {
     CHKERR m_field.modify_finite_element_adjacency_table(
         boundaryFE, MBTRI, *parentAdjFunctionDim2);
     CHKERR m_field.modify_finite_element_adjacency_table(
         boundaryFE, MBQUAD, *parentAdjFunctionDim2);
   }
   if (addSkeletonFE || !skeletonFields.empty()) {
     CHKERR m_field.modify_finite_element_adjacency_table(
         skeletonFE, MBTRI, *parentAdjFunctionDim2);
     CHKERR m_field.modify_finite_element_adjacency_table(
         skeletonFE, MBQUAD, *parentAdjFunctionDim2);
   }
  
   MoFEMFunctionReturn(0);
 }

◆ setParentAdjacency() [2/4]

template<>

MoFEMErrorCode MoFEM::Simple::setParentAdjacency ( )

private

Definition at line 103 of file Simple.cpp.

                                                          {
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
  
   parentAdjFunctionDim2 =
       boost::make_shared<ParentFiniteElementAdjacencyFunction<2>>(
           bitAdjParent, bitAdjParentMask, bitAdjEnt, bitAdjEntMask);
   parentAdjFunctionDim1 =
       boost::make_shared<ParentFiniteElementAdjacencyFunction<1>>(
           bitAdjParent, bitAdjParentMask, bitAdjEnt, bitAdjEntMask);
  
   CHKERR m_field.modify_finite_element_adjacency_table(domainFE, MBTRI,
                                                        *parentAdjFunctionDim2);
   CHKERR m_field.modify_finite_element_adjacency_table(domainFE, MBQUAD,
                                                        *parentAdjFunctionDim2);
   if (addBoundaryFE || !boundaryFields.empty())
     CHKERR m_field.modify_finite_element_adjacency_table(
         boundaryFE, MBEDGE, *parentAdjFunctionDim1);
   if (addSkeletonFE || !skeletonFields.empty())
     CHKERR m_field.modify_finite_element_adjacency_table(
         skeletonFE, MBEDGE, *parentAdjFunctionDim1);
  
   MoFEMFunctionReturn(0);
 }

◆ setParentAdjacency() [3/4]

template<>

MoFEMErrorCode MoFEM::Simple::setParentAdjacency ( )

private

Definition at line 128 of file Simple.cpp.

                                                           {
   MoFEMFunctionBegin;
   switch (getDim()) {
   case 1:
     THROW_MESSAGE("Not implemented");
   case 2:
     return setParentAdjacency<2>();
   case 3:
     return setParentAdjacency<3>();
   default:
     THROW_MESSAGE("Not implemented");
   }
   MoFEMFunctionReturn(0);
 }

◆ setParentAdjacency() [4/4]

template<int DIM>

MoFEMErrorCode MoFEM::Simple::setParentAdjacency

private

Definition at line 67 of file Simple.cpp.

                                                              {
   static_assert(DIM == 2 || DIM == 3, "not implemented");
   return MOFEM_NOT_IMPLEMENTED;
 }

◆ setSkeletonAdjacency() [1/5]

MoFEMErrorCode MoFEM::Simple::setSkeletonAdjacency	(	int	dim = `-1`,
		std::string	fe_name = `""`
	)

Set the skeleton adjacency object.

Parameters

dim
fe_name

Returns: MoFEMErrorCode

Definition at line 143 of file Simple.cpp.

                                                                       {
   MoFEMFunctionBegin;
   if (dim == -1)
     dim = getDim();
  
   if (fe_name.empty())
     fe_name = skeletonFE;
  
   switch (dim) {
   case 2:
     return setSkeletonAdjacency<2>(fe_name);
   case 3:
     return setSkeletonAdjacency<3>(fe_name);
   default:
     SETERRQ(PETSC_COMM_WORLD, MOFEM_NOT_IMPLEMENTED, "Not implemented");
   }
   MoFEMFunctionReturn(0);
 }

◆ setSkeletonAdjacency() [2/5]

template<>

MoFEMErrorCode MoFEM::Simple::setSkeletonAdjacency ( std::string fe_name )

private

Definition at line 21 of file Simple.cpp.

                                                                 {
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
  
   parentAdjSkeletonFunctionDim1 =
       boost::make_shared<ParentFiniteElementAdjacencyFunctionSkeleton<1>>(
           bitAdjParent, bitAdjParentMask, bitAdjEnt, bitAdjEntMask);
   CHKERR m_field.modify_finite_element_adjacency_table(
       fe_name, MBEDGE, *parentAdjSkeletonFunctionDim1);
  
   MoFEMFunctionReturn(0);
 }

◆ setSkeletonAdjacency() [3/5]

template<>

MoFEMErrorCode MoFEM::Simple::setSkeletonAdjacency ( std::string fe_name )

private

Definition at line 35 of file Simple.cpp.

                                                                 {
   Interface &m_field = cOre;
   MoFEMFunctionBegin;
  
   parentAdjSkeletonFunctionDim2 =
       boost::make_shared<ParentFiniteElementAdjacencyFunctionSkeleton<2>>(
           bitAdjParent, bitAdjParentMask, bitAdjEnt, bitAdjEntMask);
  
   CHKERR m_field.modify_finite_element_adjacency_table(
       fe_name, MBTRI, *parentAdjSkeletonFunctionDim2);
   CHKERR m_field.modify_finite_element_adjacency_table(
       fe_name, MBQUAD, *parentAdjSkeletonFunctionDim2);
  
   MoFEMFunctionReturn(0);
 }

◆ setSkeletonAdjacency() [4/5]

template<>

MoFEMErrorCode MoFEM::Simple::setSkeletonAdjacency ( std::string fe_name )

private

Definition at line 52 of file Simple.cpp.

                                                                  {
   MoFEMFunctionBegin;
  
   switch (getDim()) {
   case 1:
     THROW_MESSAGE("Not implemented");
   case 2:
     return setSkeletonAdjacency<2>(fe_name);
   case 3:
     return setSkeletonAdjacency<3>(fe_name);
   default:
     THROW_MESSAGE("Not implemented");
   }
   MoFEMFunctionReturn(0);
 }

◆ setSkeletonAdjacency() [5/5]

template<int DIM>

MoFEMErrorCode MoFEM::Simple::setSkeletonAdjacency ( std::string fe_name )

private

Definition at line 15 of file Simple.cpp.

                                                              {
   static_assert(DIM == 2 || DIM == 3, "not implemented");
   return MOFEM_NOT_IMPLEMENTED;
 }

◆ setUp()

MoFEMErrorCode MoFEM::Simple::setUp ( const PetscBool is_partitioned = PETSC_TRUE )

Setup problem.

Returns: error code

Examples: child_and_parent.cpp, continuity_check_on_skeleton_with_simple_2d_for_h1.cpp, continuity_check_on_skeleton_with_simple_2d_for_hcurl.cpp, continuity_check_on_skeleton_with_simple_2d_for_hdiv.cpp, field_evaluator.cpp, hcurl_check_approx_in_2d.cpp, hcurl_curl_operator.cpp, hdiv_divergence_operator.cpp, loop_entities.cpp, mixed_poisson.cpp, poisson_2d_dis_galerkin.cpp, poisson_2d_homogeneous.cpp, reaction_diffusion.cpp, simple_interface.cpp, simple_l2_only.cpp, test_cache_on_entities.cpp, testing_jacobian_of_hook_element.cpp, and testing_jacobian_of_hook_scaled_with_density_element.cpp.

Definition at line 765 of file Simple.cpp.

                                                            {
   MoFEMFunctionBegin;
  
   PetscLogEventBegin(MOFEM_EVENT_SimpleSetUP, 0, 0, 0, 0);
  
   CHKERR defineFiniteElements();
  
   if (addSkeletonFE || !skeletonFields.empty()) {
     CHKERR setSkeletonAdjacency(-1, skeletonFE);
     if (addBoundaryFE || !boundaryFields.empty()) {
       CHKERR setSkeletonAdjacency(-1, boundaryFE);
     }
   }
  
   if (addParentAdjacencies)
     CHKERR setParentAdjacency();
  
   CHKERR defineProblem(is_partitioned);
   CHKERR buildFields();
   CHKERR buildFiniteElements();
   CHKERR buildProblem();
  
   PetscLogEventEnd(MOFEM_EVENT_SimpleSetUP, 0, 0, 0, 0);
   MoFEMFunctionReturn(0);
 }

Member Data Documentation

◆ addBoundaryFE

bool MoFEM::Simple::addBoundaryFE

private

Add boundary FE.

Definition at line 570 of file Simple.hpp.

◆ addParentAdjacencies

bool MoFEM::Simple::addParentAdjacencies

private

If set to true parent adjacencies are build.

Definition at line 571 of file Simple.hpp.

◆ addSkeletonFE

bool MoFEM::Simple::addSkeletonFE

private

Add skeleton FE.

Definition at line 569 of file Simple.hpp.

◆ bitAdjEnt

BitRefLevel MoFEM::Simple::bitAdjEnt

private

bit ref level for parent

Definition at line 575 of file Simple.hpp.

◆ bitAdjEntMask

BitRefLevel MoFEM::Simple::bitAdjEntMask

private

bit ref level for parent parent

Definition at line 576 of file Simple.hpp.

◆ bitAdjParent

BitRefLevel MoFEM::Simple::bitAdjParent

private

bit ref level for parent

Definition at line 573 of file Simple.hpp.

◆ bitAdjParentMask

BitRefLevel MoFEM::Simple::bitAdjParentMask

private

bit ref level for parent parent

Definition at line 574 of file Simple.hpp.

◆ bitLevel

BitRefLevel MoFEM::Simple::bitLevel

private

BitRefLevel of the problem.

Definition at line 555 of file Simple.hpp.

◆ bitLevelMask

BitRefLevel MoFEM::Simple::bitLevelMask

private

BitRefLevel of the problem.

Definition at line 556 of file Simple.hpp.

◆ boundaryFE

std::string MoFEM::Simple::boundaryFE = "bFE"

private

boundary finite element

Definition at line 592 of file Simple.hpp.

◆ boundaryFields

std::vector<std::string> MoFEM::Simple::boundaryFields

private

boundary fields

Definition at line 579 of file Simple.hpp.

◆ boundaryMeshset

EntityHandle MoFEM::Simple::boundaryMeshset

private

meshset with boundary

Definition at line 566 of file Simple.hpp.

◆ cOre

MoFEM::Core& MoFEM::Simple::cOre

private

Definition at line 553 of file Simple.hpp.

◆ dataFields

std::vector<std::string> MoFEM::Simple::dataFields

private

Data fields.

Definition at line 581 of file Simple.hpp.

◆ dIm

int MoFEM::Simple::dIm

private

dimension of problem

Definition at line 601 of file Simple.hpp.

◆ dM

SmartPetscObj<DM> MoFEM::Simple::dM

private

Discrete manager (interface to PETSc/MoFEM functions)

Definition at line 604 of file Simple.hpp.

◆ domainFE

std::string MoFEM::Simple::domainFE = "dFE"

private

domain finite element

Definition at line 591 of file Simple.hpp.

◆ domainFields

std::vector<std::string> MoFEM::Simple::domainFields

private

domain fields

Definition at line 578 of file Simple.hpp.

◆ fieldsOrder

std::list<std::tuple<std::string, int, Range, bool> > MoFEM::Simple::fieldsOrder

private

fields order. 1: field name, order, range, set by range if true

Definition at line 587 of file Simple.hpp.

◆ meshFileName

char MoFEM::Simple::meshFileName[255]

private

mesh file name

Definition at line 600 of file Simple.hpp.

◆ meshSet

EntityHandle MoFEM::Simple::meshSet

private

domain meshset

Definition at line 565 of file Simple.hpp.

◆ meshsetFE

std::string MoFEM::Simple::meshsetFE = "mFE"

private

meshset finite element

Definition at line 594 of file Simple.hpp.

◆ meshsetFields

std::vector<std::string> MoFEM::Simple::meshsetFields

private

meshset fields

Definition at line 582 of file Simple.hpp.

◆ meshsetFiniteElementEntities

std::vector<Range> MoFEM::Simple::meshsetFiniteElementEntities

private

Meshset element entities.

Definition at line 598 of file Simple.hpp.

◆ MOFEM_EVENT_SimpleBuildFields

PetscLogEvent MoFEM::Simple::MOFEM_EVENT_SimpleBuildFields

private

Definition at line 560 of file Simple.hpp.

◆ MOFEM_EVENT_SimpleBuildFiniteElements

PetscLogEvent MoFEM::Simple::MOFEM_EVENT_SimpleBuildFiniteElements

private

Definition at line 561 of file Simple.hpp.

◆ MOFEM_EVENT_SimpleBuildProblem

PetscLogEvent MoFEM::Simple::MOFEM_EVENT_SimpleBuildProblem

private

Definition at line 562 of file Simple.hpp.

◆ MOFEM_EVENT_SimpleKSPSolve

PetscLogEvent MoFEM::Simple::MOFEM_EVENT_SimpleKSPSolve

private

Definition at line 563 of file Simple.hpp.

◆ MOFEM_EVENT_SimpleLoadMesh

PetscLogEvent MoFEM::Simple::MOFEM_EVENT_SimpleLoadMesh

private

Definition at line 559 of file Simple.hpp.

◆ MOFEM_EVENT_SimpleSetUP

PetscLogEvent MoFEM::Simple::MOFEM_EVENT_SimpleSetUP

private

Definition at line 558 of file Simple.hpp.

◆ nameOfProblem

std::string MoFEM::Simple::nameOfProblem = "SimpleProblem"

private

problem name

Definition at line 590 of file Simple.hpp.

◆ noFieldDataFields

std::vector<std::string> MoFEM::Simple::noFieldDataFields

private

NOFIELD field name.

Definition at line 584 of file Simple.hpp.

◆ noFieldFields

std::vector<std::string> MoFEM::Simple::noFieldFields

private

NOFIELD field name.

Definition at line 583 of file Simple.hpp.

◆ otherFEs

std::vector<std::string> MoFEM::Simple::otherFEs

private

Other finite elements.

Definition at line 596 of file Simple.hpp.

◆ parentAdjFunctionDim1

boost::shared_ptr<ParentFiniteElementAdjacencyFunction<1> > MoFEM::Simple::parentAdjFunctionDim1

private

Definition at line 620 of file Simple.hpp.

◆ parentAdjFunctionDim2

boost::shared_ptr<ParentFiniteElementAdjacencyFunction<2> > MoFEM::Simple::parentAdjFunctionDim2

private

Definition at line 618 of file Simple.hpp.

◆ parentAdjFunctionDim3

boost::shared_ptr<ParentFiniteElementAdjacencyFunction<3> > MoFEM::Simple::parentAdjFunctionDim3

private

Definition at line 616 of file Simple.hpp.

◆ parentAdjSkeletonFunctionDim1

boost::shared_ptr<ParentFiniteElementAdjacencyFunctionSkeleton<1> > MoFEM::Simple::parentAdjSkeletonFunctionDim1

private

Definition at line 625 of file Simple.hpp.

◆ parentAdjSkeletonFunctionDim2

boost::shared_ptr<ParentFiniteElementAdjacencyFunctionSkeleton<2> > MoFEM::Simple::parentAdjSkeletonFunctionDim2

private

Definition at line 623 of file Simple.hpp.

◆ skeletonFE

std::string MoFEM::Simple::skeletonFE = "sFE"

private

skeleton finite element

Definition at line 593 of file Simple.hpp.

◆ skeletonFields

std::vector<std::string> MoFEM::Simple::skeletonFields

private

fields on the skeleton

Definition at line 580 of file Simple.hpp.

◆ skeletonMeshset

EntityHandle MoFEM::Simple::skeletonMeshset

private

skeleton meshset with boundary

Definition at line 567 of file Simple.hpp.

The documentation for this struct was generated from the following files:

src/interfaces/Simple.hpp
src/interfaces/impl/Simple.cpp

Public Types

Public Member Functions

Static Public Member Functions

Private Member Functions

Private Attributes

Detailed Description

Member Typedef Documentation

◆ LoadFileFunc

Constructor & Destructor Documentation

◆ Simple()

◆ ~Simple()

Member Function Documentation

◆ addBoundaryField()

◆ addDataField()

◆ addDomainBrokenField()

◆ addDomainField()

◆ addFieldToEmptyFieldBlocks()

◆ addMeshsetField()

◆ addSkeletonField()

◆ buildFields()

◆ buildFiniteElements()

◆ buildProblem()

◆ createBoundaryMeshset()

◆ createSkeletonMeshset()

◆ defaultLoadFileFunc()

◆ defineFiniteElements()

◆ defineProblem()

◆ deleteDM()

◆ deleteFiniteElements()

◆ exchangeGhostCells()

◆ getAddBoundaryFE()

◆ getAddSkeletonFE()

◆ getBitAdjEnt()

◆ getBitAdjEntMask()

◆ getBitAdjParent()

◆ getBitAdjParentMask()

◆ getBitRefLevel()

◆ getBitRefLevelMask()

◆ getBoundaryFEName() [1/2]

◆ getBoundaryFEName() [2/2]

◆ getBoundaryMeshSet()

◆ getDim()

◆ getDM() [1/2]

◆ getDM() [2/2]

◆ getDomainFEName() [1/2]

◆ getDomainFEName() [2/2]

◆ getMeshSet()

◆ getMeshset()

◆ getMeshsetFEName()

◆ getMeshsetFiniteElementEntities()

◆ getOptions()

◆ getOtherFiniteElements()

◆ getParentAdjacencies()

◆ getProblemName() [1/2]

◆ getProblemName() [2/2]

◆ getSkeletonFEName() [1/2]

◆ getSkeletonFEName() [2/2]

◆ getSkeletonMeshSet()

◆ loadFile() [1/2]

◆ loadFile() [2/2]

◆ query_interface()

◆ removeBoundaryField()

◆ removeDomainField()

◆ removeSkeletonField()

◆ reSetUp()

◆ setDim()

◆ setFieldOrder()

◆ setParentAdjacency() [1/4]

◆ setParentAdjacency() [2/4]

◆ setParentAdjacency() [3/4]

◆ setParentAdjacency() [4/4]

◆ setSkeletonAdjacency() [1/5]

◆ setSkeletonAdjacency() [2/5]

◆ setSkeletonAdjacency() [3/5]

◆ setSkeletonAdjacency() [4/5]

◆ setSkeletonAdjacency() [5/5]

◆ setUp()

Member Data Documentation

◆ addBoundaryFE

◆ addParentAdjacencies