v0.14.0
Public Types | Public Member Functions | Static Public Member Functions | Private Member Functions | Private Attributes | List of all members
MoFEM::Simple Struct Reference

Simple interface for fast problem set-up. More...

#include <src/interfaces/Simple.hpp>

Inheritance diagram for MoFEM::Simple:
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Collaboration diagram for MoFEM::Simple:
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Public Types

typedef boost::function< MoFEMErrorCode(Interface &, const char *, const char *)> LoadFileFunc
 

Public Member Functions

MoFEMErrorCode query_interface (boost::typeindex::type_index type_index, UnknownInterface **iface) const
 
 Simple (const MoFEM::Core &core)
 
virtual ~Simple ()=default
 
MoFEMErrorCode getOptions ()
 get options More...
 
MoFEMErrorCode loadFile (const std::string options, const std::string mesh_file_name, LoadFileFunc loadFunc=defaultLoadFileFunc)
 Load mesh file. More...
 
MoFEMErrorCode loadFile (const std::string mesh_file_name="")
 Load mesh file with parallel options if number of cores > 1. More...
 
MoFEMErrorCode addDomainField (const std::string &name, const FieldSpace space, const FieldApproximationBase base, const FieldCoefficientsNumber nb_of_coefficients, const TagType tag_type=MB_TAG_SPARSE, const enum MoFEMTypes bh=MF_ZERO, int verb=-1)
 Add field on domain. More...
 
MoFEMErrorCode addDomainBrokenField (const std::string &name, const FieldSpace space, const FieldApproximationBase base, const FieldCoefficientsNumber nb_of_coefficients, const TagType tag_type=MB_TAG_SPARSE, const enum MoFEMTypes bh=MF_ZERO, int verb=-1)
 Add broken field on domain. More...
 
MoFEMErrorCode addBoundaryField (const std::string &name, const FieldSpace space, const FieldApproximationBase base, const FieldCoefficientsNumber nb_of_coefficients, const TagType tag_type=MB_TAG_SPARSE, const enum MoFEMTypes bh=MF_ZERO, int verb=-1)
 Add field on boundary. More...
 
MoFEMErrorCode addSkeletonField (const std::string &name, const FieldSpace space, const FieldApproximationBase base, const FieldCoefficientsNumber nb_of_coefficients, const TagType tag_type=MB_TAG_SPARSE, const enum MoFEMTypes bh=MF_ZERO, int verb=-1)
 Add field on skeleton. More...
 
MoFEMErrorCode addDataField (const std::string &name, const FieldSpace space, const FieldApproximationBase base, const FieldCoefficientsNumber nb_of_coefficients, const TagType tag_type=MB_TAG_SPARSE, const enum MoFEMTypes bh=MF_ZERO, int verb=-1)
 Add field on domain. More...
 
MoFEMErrorCode removeDomainField (const std::string &name)
 Remove field form domain. More...
 
MoFEMErrorCode removeBoundaryField (const std::string &name)
 Remove field form boundary. More...
 
MoFEMErrorCode removeSkeletonField (const std::string &name)
 Remove field form skeleton. More...
 
MoFEMErrorCode defineFiniteElements ()
 Define finite elements. More...
 
MoFEMErrorCode defineProblem (const PetscBool is_partitioned=PETSC_TRUE)
 define problem More...
 
MoFEMErrorCode setFieldOrder (const std::string field_name, const int order, const Range *ents=NULL)
 Set field order. More...
 
MoFEMErrorCode buildFields ()
 Build fields. More...
 
MoFEMErrorCode buildFiniteElements ()
 Build finite elements. More...
 
MoFEMErrorCode setSkeletonAdjacency (int dim=-1, std::string fe_name="")
 Set the skeleton adjacency object. More...
 
MoFEMErrorCode buildProblem ()
 Build problem. More...
 
MoFEMErrorCode setUp (const PetscBool is_partitioned=PETSC_TRUE)
 Setup problem. More...
 
MoFEMErrorCode reSetUp (bool only_dm=false)
 Rebuild internal MoFEM data structures. More...
 
MoFEMErrorCode getDM (DM *dm)
 Get DM. More...
 
SmartPetscObj< DM > getDM ()
 Return smart DM object. More...
 
int getDim () const
 Get the problem dimension. More...
 
void setDim (int dim)
 Set the problem dimension. More...
 
DEPRECATED EntityHandlegetMeshSet ()
 
EntityHandlegetMeshset ()
 Get the MeshSet object. More...
 
EntityHandlegetBoundaryMeshSet ()
 Get the BoundaryMeshSet object. More...
 
EntityHandlegetSkeletonMeshSet ()
 Get the SkeletonMeshSet object. More...
 
BitRefLevelgetBitRefLevel ()
 Get the BitRefLevel. More...
 
BitRefLevelgetBitRefLevelMask ()
 Get the BitRefLevel. More...
 
const std::string getDomainFEName () const
 Get the Domain FE Name. More...
 
const std::string getBoundaryFEName () const
 Get the Boundary FE Name. More...
 
const std::string getSkeletonFEName () const
 Get the Skeleton FE Name. More...
 
const std::string getProblemName () const
 Get the Problem Name. More...
 
std::string & getDomainFEName ()
 Get the Domain FE Name. More...
 
std::string & getBoundaryFEName ()
 Get the Boundary FE Name. More...
 
std::string & getSkeletonFEName ()
 Get the Skeleton FE Name. More...
 
std::string & getProblemName ()
 Get the Problem Name. More...
 
std::vector< std::string > & getOtherFiniteElements ()
 Get the Other Finite Elements. More...
 
MoFEMErrorCode deleteDM ()
 Delete dm. More...
 
MoFEMErrorCode deleteFiniteElements ()
 Delete finite elements. More...
 
boolgetAddSkeletonFE ()
 Get the addSkeletonFE. More...
 
boolgetAddBoundaryFE ()
 Get the addSkeletonFE. More...
 
boolgetParentAdjacencies ()
 Get the addParentAdjacencies. More...
 
auto & getBitAdjParent ()
 bit ref level for parent More...
 
auto & getBitAdjParentMask ()
 bit ref level for parent parent More...
 
auto & getBitAdjEnt ()
 bit ref level for parent More...
 
auto & getBitAdjEntMask ()
 bit ref level for parent parent More...
 
MoFEMErrorCode addFieldToEmptyFieldBlocks (const std::string row_field, const std::string col_field) const
 add empty block to problem More...
 
- Public Member Functions inherited from MoFEM::UnknownInterface
template<class IFACE >
MoFEMErrorCode registerInterface (bool error_if_registration_failed=true)
 Register interface. More...
 
template<class IFACE >
MoFEMErrorCode getInterface (IFACE *&iface) const
 Get interface reference to pointer of interface. More...
 
template<class IFACE >
MoFEMErrorCode getInterface (IFACE **const iface) const
 Get interface pointer to pointer of interface. More...
 
template<class IFACE , typename boost::enable_if< boost::is_pointer< IFACE >, int >::type = 0>
IFACE getInterface () const
 Get interface pointer to pointer of interface. More...
 
template<class IFACE , typename boost::enable_if< boost::is_reference< IFACE >, int >::type = 0>
IFACE getInterface () const
 Get reference to interface. More...
 
template<class IFACE >
IFACE * getInterface () const
 Function returning pointer to interface. More...
 
virtual ~UnknownInterface ()=default
 

Static Public Member Functions

static MoFEMErrorCode defaultLoadFileFunc (Interface &m_field, const char *file_name, const char *options)
 Set function for loading mesh file. More...
 
- Static Public Member Functions inherited from MoFEM::UnknownInterface
static MoFEMErrorCode getLibVersion (Version &version)
 Get library version. More...
 
static MoFEMErrorCode getFileVersion (moab::Interface &moab, Version &version)
 Get database major version. More...
 
static MoFEMErrorCode setFileVersion (moab::Interface &moab, Version version=Version(MoFEM_VERSION_MAJOR, MoFEM_VERSION_MINOR, MoFEM_VERSION_BUILD))
 Get database major version. More...
 
static MoFEMErrorCode getInterfaceVersion (Version &version)
 Get database major version. More...
 

Private Member Functions

MoFEMErrorCode createBoundaryMeshset ()
 
MoFEMErrorCode createSkeletonMeshset ()
 
MoFEMErrorCode exchangeGhostCells ()
 
template<int DIM = -1>
MoFEMErrorCode setSkeletonAdjacency (std::string fe_name)
 
template<int DIM = -1>
MoFEMErrorCode setParentAdjacency ()
 
template<>
MoFEMErrorCode setSkeletonAdjacency (std::string fe_name)
 
template<>
MoFEMErrorCode setSkeletonAdjacency (std::string fe_name)
 
template<>
MoFEMErrorCode setSkeletonAdjacency (std::string fe_name)
 
template<>
MoFEMErrorCode setParentAdjacency ()
 
template<>
MoFEMErrorCode setParentAdjacency ()
 
template<>
MoFEMErrorCode setParentAdjacency ()
 

Private Attributes

MoFEM::CorecOre
 
BitRefLevel bitLevel
 BitRefLevel of the problem. More...
 
BitRefLevel bitLevelMask
 BitRefLevel of the problem. More...
 
PetscLogEvent MOFEM_EVENT_SimpleSetUP
 
PetscLogEvent MOFEM_EVENT_SimpleLoadMesh
 
PetscLogEvent MOFEM_EVENT_SimpleBuildFields
 
PetscLogEvent MOFEM_EVENT_SimpleBuildFiniteElements
 
PetscLogEvent MOFEM_EVENT_SimpleBuildProblem
 
PetscLogEvent MOFEM_EVENT_SimpleKSPSolve
 
EntityHandle meshSet
 domain meshset More...
 
EntityHandle boundaryMeshset
 meshset with boundary More...
 
EntityHandle skeletonMeshset
 skeleton meshset with boundary More...
 
bool addSkeletonFE
 Add skeleton FE. More...
 
bool addBoundaryFE
 Add boundary FE. More...
 
bool addParentAdjacencies
 If set to true parent adjacencies are build. More...
 
BitRefLevel bitAdjParent
 bit ref level for parent More...
 
BitRefLevel bitAdjParentMask
 bit ref level for parent parent More...
 
BitRefLevel bitAdjEnt
 bit ref level for parent More...
 
BitRefLevel bitAdjEntMask
 bit ref level for parent parent More...
 
std::vector< std::string > domainFields
 domain fields More...
 
std::vector< std::string > boundaryFields
 boundary fields More...
 
std::vector< std::string > skeletonFields
 fields on the skeleton More...
 
std::vector< std::string > dataFields
 Data fields. More...
 
std::vector< std::string > noFieldFields
 NOFIELD field name. More...
 
std::vector< std::string > noFieldDataFields
 NOFIELD field name. More...
 
std::list< std::tuple< std::string, int, Range, bool > > fieldsOrder
 
std::string nameOfProblem
 problem name More...
 
std::string domainFE
 domain finite element More...
 
std::string boundaryFE
 boundary finite element More...
 
std::string skeletonFE
 skeleton finite element More...
 
std::vector< std::string > otherFEs
 Other finite elements. More...
 
char meshFileName [255]
 mesh file name More...
 
int dIm
 dimension of problem More...
 
SmartPetscObj< DM > dM
 Discrete manager (interface to PETSc/MoFEM functions) More...
 
boost::shared_ptr< ParentFiniteElementAdjacencyFunction< 3 > > parentAdjFunctionDim3
 
boost::shared_ptr< ParentFiniteElementAdjacencyFunction< 2 > > parentAdjFunctionDim2
 
boost::shared_ptr< ParentFiniteElementAdjacencyFunction< 1 > > parentAdjFunctionDim1
 
boost::shared_ptr< ParentFiniteElementAdjacencyFunctionSkeleton< 2 > > parentAdjSkeletonFunctionDim2
 
boost::shared_ptr< ParentFiniteElementAdjacencyFunctionSkeleton< 1 > > parentAdjSkeletonFunctionDim1
 

Detailed Description

Simple interface for fast problem set-up.

Examples
adolc_plasticity.cpp, approx_sphere.cpp, boundary_marker.cpp, child_and_parent.cpp, continuity_check_on_skeleton_with_simple_2d_for_h1.cpp, continuity_check_on_skeleton_with_simple_2d_for_hcurl.cpp, continuity_check_on_skeleton_with_simple_2d_for_hdiv.cpp, dg_projection.cpp, dynamic_first_order_con_law.cpp, eigen_elastic.cpp, field_evaluator.cpp, free_surface.cpp, hanging_node_approx.cpp, hcurl_check_approx_in_2d.cpp, hcurl_curl_operator.cpp, hdiv_check_approx_in_3d.cpp, hdiv_divergence_operator.cpp, heat_equation.cpp, heat_method.cpp, hello_world.cpp, helmholtz.cpp, higher_derivatives.cpp, level_set.cpp, loop_entities.cpp, mesh_smoothing.cpp, mixed_poisson.cpp, operators_tests.cpp, partition_mesh.cpp, phase.cpp, photon_diffusion.cpp, plastic.cpp, plate.cpp, plot_base.cpp, poisson_2d_dis_galerkin.cpp, poisson_2d_homogeneous.cpp, reaction_diffusion.cpp, scalar_check_approximation.cpp, schur_test_diag_mat.cpp, seepage.cpp, shallow_wave.cpp, simple_elasticity.cpp, simple_interface.cpp, simple_l2_only.cpp, tensor_divergence_operator.cpp, test_broken_space.cpp, test_cache_on_entities.cpp, testing_jacobian_of_hook_element.cpp, testing_jacobian_of_hook_scaled_with_density_element.cpp, thermo_elastic.cpp, and wave_equation.cpp.

Definition at line 27 of file Simple.hpp.

Member Typedef Documentation

◆ LoadFileFunc

typedef boost::function<MoFEMErrorCode(Interface &, const char *, const char *)> MoFEM::Simple::LoadFileFunc

Definition at line 43 of file Simple.hpp.

Constructor & Destructor Documentation

◆ Simple()

MoFEM::Simple::Simple ( const MoFEM::Core core)

Definition at line 162 of file Simple.cpp.

163  : cOre(const_cast<Core &>(core)), bitLevel(BitRefLevel().set(0)),
165  skeletonMeshset(0), nameOfProblem("SimpleProblem"), domainFE("dFE"),
166  boundaryFE("bFE"), skeletonFE("sFE"), dIm(-1), addSkeletonFE(false),
167  addBoundaryFE(false), addParentAdjacencies(false),
169  bitAdjEnt(BitRefLevel().set()), bitAdjEntMask(BitRefLevel().set()) {
170  PetscLogEventRegister("SimpSetUp", 0, &MOFEM_EVENT_SimpleSetUP);
171  PetscLogEventRegister("SimpLoadMesh", 0, &MOFEM_EVENT_SimpleLoadMesh);
172  PetscLogEventRegister("SimpBuildFields", 0, &MOFEM_EVENT_SimpleBuildFields);
173  PetscLogEventRegister("SimpBuildFEs", 0,
175  PetscLogEventRegister("SimpSetUp", 0, &MOFEM_EVENT_SimpleBuildProblem);
176  PetscLogEventRegister("SimpKSPSolve", 0, &MOFEM_EVENT_SimpleKSPSolve);
177  strcpy(meshFileName, "mesh.h5m");
178 }

◆ ~Simple()

virtual MoFEM::Simple::~Simple ( )
virtualdefault

Member Function Documentation

◆ addBoundaryField()

MoFEMErrorCode MoFEM::Simple::addBoundaryField ( const std::string &  name,
const FieldSpace  space,
const FieldApproximationBase  base,
const FieldCoefficientsNumber  nb_of_coefficients,
const TagType  tag_type = MB_TAG_SPARSE,
const enum MoFEMTypes  bh = MF_ZERO,
int  verb = -1 
)

Add field on boundary.

Parameters
namename of the field
spacespace (L2,H1,Hdiv,Hcurl)
baseapproximation base, see FieldApproximationBase
nb_of_coefficientsnumber of field coefficients
tag_typetype of the tag MB_TAG_DENSE or MB_TAG_SPARSE (DENSE is faster and uses less memory, SPARSE is more flexible if you define field on subdomains)
bhif MF_EXCL throws error if field exits, MF_ZERO no error if field exist
verbverbosity level
Returns
error code
Examples
child_and_parent.cpp, hcurl_curl_operator.cpp, hdiv_divergence_operator.cpp, mesh_smoothing.cpp, and simple_interface.cpp.

Definition at line 354 of file Simple.cpp.

358  {
359  Interface &m_field = cOre;
361  CHKERR m_field.add_field(name, space, base, nb_of_coefficients, tag_type, bh,
362  verb);
363  boundaryFields.push_back(name);
364  if (space == NOFIELD)
365  SETERRQ(
366  PETSC_COMM_SELF, MOFEM_NOT_IMPLEMENTED,
367  "NOFIELD space for boundary filed not implemented in Simple interface");
369 }

◆ addDataField()

MoFEMErrorCode MoFEM::Simple::addDataField ( const std::string &  name,
const FieldSpace  space,
const FieldApproximationBase  base,
const FieldCoefficientsNumber  nb_of_coefficients,
const TagType  tag_type = MB_TAG_SPARSE,
const enum MoFEMTypes  bh = MF_ZERO,
int  verb = -1 
)

Add field on domain.

Parameters
namename of the field
spacespace (L2,H1,Hdiv,Hcurl)
baseapproximation base, see FieldApproximationBase
nb_of_coefficientsnumber of field coefficients
tag_typetype of the tag MB_TAG_DENSE or MB_TAG_SPARSE (DENSE is faster and uses less memory, SPARSE is more flexible if you define field on subdomains)
bhif MF_EXCL throws error if field exits, MF_ZERO no error if field exist
verbverbosity level
Returns
error code
Examples
hcurl_curl_operator.cpp, and hdiv_divergence_operator.cpp.

Definition at line 392 of file Simple.cpp.

396  {
397 
398  Interface &m_field = cOre;
400  CHKERR m_field.add_field(name, space, base, nb_of_coefficients, tag_type, bh,
401  verb);
402  if (space == NOFIELD)
403  noFieldDataFields.push_back(name);
404  else
405  dataFields.push_back(name);
407 }

◆ addDomainBrokenField()

MoFEMErrorCode MoFEM::Simple::addDomainBrokenField ( const std::string &  name,
const FieldSpace  space,
const FieldApproximationBase  base,
const FieldCoefficientsNumber  nb_of_coefficients,
const TagType  tag_type = MB_TAG_SPARSE,
const enum MoFEMTypes  bh = MF_ZERO,
int  verb = -1 
)

Add broken field on domain.

Parameters
namename of the field
spacespace (L2,H1,Hdiv,Hcurl)
baseapproximation base, see FieldApproximationBase
nb_of_coefficientsnumber of field coefficients
tag_typetype of the tag MB_TAG_DENSE or MB_TAG_SPARSE (DENSE is faster and uses less memory, SPARSE is more flexible if you define field on subdomains)
bhif MF_EXCL throws error if field exits, MF_ZERO no error if field exist
verbverbosity level
Returns
error code

Definition at line 282 of file Simple.cpp.

286  {
287 
288  Interface &m_field = cOre;
290 
291  auto get_side_map_hcurl = [&]() {
292  return std::vector<
293 
294  std::pair<EntityType,
295  std::function<MoFEMErrorCode(BaseFunction::DofsSideMap &)>
296 
297  >>{
298 
299  {MBTRI,
300  [&](BaseFunction::DofsSideMap &dofs_side_map) -> MoFEMErrorCode {
302  dofs_side_map);
303  }}
304 
305  };
306  };
307 
308  auto get_side_map_hdiv = [&]() {
309  return std::vector<
310 
311  std::pair<EntityType,
312  std::function<MoFEMErrorCode(BaseFunction::DofsSideMap &)>
313 
314  >>{
315 
316  {MBTET,
317  [&](BaseFunction::DofsSideMap &dofs_side_map) -> MoFEMErrorCode {
319  dofs_side_map);
320  }}
321 
322  };
323  };
324 
325  auto get_side_map = [&](auto space) {
326  switch (space) {
327  case HCURL:
328  return get_side_map_hcurl();
329  case HDIV:
330  return get_side_map_hdiv();
331  default:
332  MOFEM_LOG_CHANNEL("WORLD");
333  MOFEM_LOG("WORLD", Sev::warning)
334  << "Side dof map for broken space <" << space << "> not implemented";
335  }
336  return std::vector<
337 
338  std::pair<EntityType,
339  std::function<MoFEMErrorCode(BaseFunction::DofsSideMap &)>
340 
341  >>{};
342  };
343 
344  CHKERR m_field.add_broken_field(name, space, base, nb_of_coefficients,
345  get_side_map(space), tag_type, bh, verb);
346  if (space == NOFIELD)
347  noFieldFields.push_back(name);
348  else
349  domainFields.push_back(name);
351 }

◆ addDomainField()

MoFEMErrorCode MoFEM::Simple::addDomainField ( const std::string &  name,
const FieldSpace  space,
const FieldApproximationBase  base,
const FieldCoefficientsNumber  nb_of_coefficients,
const TagType  tag_type = MB_TAG_SPARSE,
const enum MoFEMTypes  bh = MF_ZERO,
int  verb = -1 
)

Add field on domain.

Parameters
namename of the field
spacespace (L2,H1,Hdiv,Hcurl)
baseapproximation base, see FieldApproximationBase
nb_of_coefficientsnumber of field coefficients
tag_typetype of the tag MB_TAG_DENSE or MB_TAG_SPARSE (DENSE is faster and uses less memory, SPARSE is more flexible if you define field on subdomains)
bhif MF_EXCL throws error if field exits, MF_ZERO no error if field exist
verbverbosity level
Returns
error code
Examples
child_and_parent.cpp, continuity_check_on_skeleton_with_simple_2d_for_h1.cpp, continuity_check_on_skeleton_with_simple_2d_for_hcurl.cpp, continuity_check_on_skeleton_with_simple_2d_for_hdiv.cpp, field_evaluator.cpp, hcurl_check_approx_in_2d.cpp, hcurl_curl_operator.cpp, hdiv_divergence_operator.cpp, loop_entities.cpp, mesh_smoothing.cpp, mixed_poisson.cpp, poisson_2d_dis_galerkin.cpp, poisson_2d_homogeneous.cpp, reaction_diffusion.cpp, simple_elasticity.cpp, simple_interface.cpp, simple_l2_only.cpp, test_cache_on_entities.cpp, testing_jacobian_of_hook_element.cpp, and testing_jacobian_of_hook_scaled_with_density_element.cpp.

Definition at line 264 of file Simple.cpp.

268  {
269 
270  Interface &m_field = cOre;
272  CHKERR m_field.add_field(name, space, base, nb_of_coefficients, tag_type, bh,
273  verb);
274  if (space == NOFIELD)
275  noFieldFields.push_back(name);
276  else
277  domainFields.push_back(name);
279 }

◆ addFieldToEmptyFieldBlocks()

MoFEMErrorCode MoFEM::Simple::addFieldToEmptyFieldBlocks ( const std::string  row_field,
const std::string  col_field 
) const

add empty block to problem

MatrixManager assumes that all blocks, i.e. all fields combinations are non zero. This is not always the case, to optimise code and reduce memory usage user can specifi which blocks are empty.

Parameters
row_fieldrow field name
col_fieldcol field name
Returns
MoFEMErrorCode

Definition at line 782 of file Simple.cpp.

783  {
784  Interface &m_field = cOre;
786  CHKERR m_field.getInterface<ProblemsManager>()->addFieldToEmptyFieldBlocks(
787  getProblemName(), row_field, col_field);
789 }

◆ addSkeletonField()

MoFEMErrorCode MoFEM::Simple::addSkeletonField ( const std::string &  name,
const FieldSpace  space,
const FieldApproximationBase  base,
const FieldCoefficientsNumber  nb_of_coefficients,
const TagType  tag_type = MB_TAG_SPARSE,
const enum MoFEMTypes  bh = MF_ZERO,
int  verb = -1 
)

Add field on skeleton.

Parameters
namename of the field
spacespace (L2,H1,Hdiv,Hcurl)
baseapproximation base, see FieldApproximationBase
nb_of_coefficientsnumber of field coefficients
tag_typetype of the tag MB_TAG_DENSE or MB_TAG_SPARSE (DENSE is faster and uses less memory, SPARSE is more flexible if you define field on subdomains)
bhif MF_EXCL throws error if field exits, MF_ZERO no error if field exist
verbverbosity level
Returns
error code
Examples
continuity_check_on_skeleton_with_simple_2d_for_h1.cpp, continuity_check_on_skeleton_with_simple_2d_for_hcurl.cpp, continuity_check_on_skeleton_with_simple_2d_for_hdiv.cpp, and simple_interface.cpp.

Definition at line 372 of file Simple.cpp.

376  {
377 
378  Interface &m_field = cOre;
380  CHKERR m_field.add_field(name, space, base, nb_of_coefficients, tag_type, bh,
381  verb);
382  skeletonFields.push_back(name);
383  if (space == NOFIELD)
384  SETERRQ(
385  PETSC_COMM_SELF, MOFEM_NOT_IMPLEMENTED,
386  "NOFIELD space for boundary filed not implemented in Simple interface");
387 
389 }

◆ buildFields()

MoFEMErrorCode MoFEM::Simple::buildFields ( )

Build fields.

Returns
error code
Examples
mesh_smoothing.cpp, and simple_elasticity.cpp.

Definition at line 554 of file Simple.cpp.

554  {
555  Interface &m_field = cOre;
557  PetscLogEventBegin(MOFEM_EVENT_SimpleBuildFields, 0, 0, 0, 0);
558 
559  auto comm_interface_ptr = m_field.getInterface<CommInterface>();
560  auto bit_ref_ptr = m_field.getInterface<BitRefManager>();
561 
562  // Add entities to the fields
563  auto add_ents_to_field = [&](auto meshset, auto dim, auto &fields) {
565  for (auto &field : fields) {
566  CHKERR m_field.add_ents_to_field_by_dim(meshset, dim, field);
567  CHKERR comm_interface_ptr->synchroniseFieldEntities(field, 0);
568  }
570  };
571 
572  auto make_no_field_ents = [&](auto &fields) {
574  for (auto &field : fields) {
575  std::array<double, 6> coords = {0, 0, 0, 0, 0, 0};
576  CHKERR m_field.create_vertices_and_add_to_field(field, coords.data(), 1);
577  CHKERR comm_interface_ptr->makeFieldEntitiesMultishared(field, 0);
578  CHKERR bit_ref_ptr->setFieldEntitiesBitRefLevel(field, bitLevel);
579  }
581  };
582 
583  CHKERR add_ents_to_field(meshSet, dIm, domainFields);
584  CHKERR add_ents_to_field(meshSet, dIm, dataFields);
585  CHKERR add_ents_to_field(boundaryMeshset, dIm - 1, boundaryFields);
586  CHKERR add_ents_to_field(skeletonMeshset, dIm - 1, skeletonFields);
587 
588  std::set<std::string> nofield_fields;
589  for (auto &f : noFieldFields)
590  nofield_fields.insert(f);
591  for (auto &f : noFieldDataFields)
592  nofield_fields.insert(f);
593 
594  CHKERR make_no_field_ents(nofield_fields);
595 
596  // Set order
597 
598  auto get_field_ptr = [&](auto &f) { return m_field.get_field_structure(f); };
599  for (auto &t : fieldsOrder) {
600  const auto f = std::get<0>(t);
601  const auto order = std::get<1>(t);
602 
603  MOFEM_TAG_AND_LOG("WORLD", Sev::inform, "Simple")
604  << "Set order to field " << f << " order " << order;
605  MOFEM_LOG_CHANNEL("SYNC");
606  if (std::get<3>(t)) {
607  MOFEM_TAG_AND_LOG("SYNC", Sev::verbose, "Simple")
608  << "To ents: " << std::endl
609  << std::get<2>(t) << std::endl;
610  }
611  MOFEM_LOG_SEVERITY_SYNC(m_field.get_comm(), Sev::verbose);
612 
613  if (std::get<3>(t)) {
614 
615  CHKERR m_field.set_field_order(std::get<2>(t), f, order);
616 
617  } else {
618  auto f_ptr = get_field_ptr(f);
619 
620  if (f_ptr->getSpace() == H1) {
621  if (f_ptr->getApproxBase() == AINSWORTH_BERNSTEIN_BEZIER_BASE) {
622  CHKERR m_field.set_field_order(meshSet, MBVERTEX, f, order);
623  } else {
624  CHKERR m_field.set_field_order(meshSet, MBVERTEX, f, 1);
625  }
626  }
627 
628  for (auto d = 1; d <= dIm; ++d) {
629  for (EntityType t = CN::TypeDimensionMap[d].first;
630  t <= CN::TypeDimensionMap[d].second; ++t) {
631  CHKERR m_field.set_field_order(meshSet, t, f, order);
632  }
633  }
634  }
635  }
636  MOFEM_LOG_CHANNEL("WORLD");
637  // Build fields
638  CHKERR m_field.build_fields();
639  PetscLogEventEnd(MOFEM_EVENT_SimpleBuildFields, 0, 0, 0, 0);
641 }

◆ buildFiniteElements()

MoFEMErrorCode MoFEM::Simple::buildFiniteElements ( )

Build finite elements.

Returns
error code
Examples
mesh_smoothing.cpp, and simple_elasticity.cpp.

Definition at line 643 of file Simple.cpp.

643  {
644  Interface &m_field = cOre;
646  PetscLogEventBegin(MOFEM_EVENT_SimpleBuildFiniteElements, 0, 0, 0, 0);
647  // Add finite elements
648  CHKERR m_field.add_ents_to_finite_element_by_dim(meshSet, dIm, domainFE,
649  true);
650  CHKERR m_field.build_finite_elements(domainFE);
651  if (addBoundaryFE || boundaryFields.size()) {
652  CHKERR m_field.add_ents_to_finite_element_by_dim(boundaryMeshset, dIm - 1,
653  boundaryFE, true);
654  CHKERR m_field.build_finite_elements(boundaryFE);
655  }
656  if (addSkeletonFE || skeletonFields.size()) {
657  CHKERR m_field.add_ents_to_finite_element_by_dim(skeletonMeshset, dIm - 1,
658  skeletonFE, true);
659  CHKERR m_field.build_finite_elements(skeletonFE);
660  }
661  for (std::vector<std::string>::iterator fit = otherFEs.begin();
662  fit != otherFEs.end(); ++fit) {
663  CHKERR m_field.build_finite_elements(*fit);
664  }
665  PetscLogEventEnd(MOFEM_EVENT_SimpleBuildFiniteElements, 0, 0, 0, 0);
667 }

◆ buildProblem()

MoFEMErrorCode MoFEM::Simple::buildProblem ( )

Build problem.

Returns
error code
Examples
mesh_smoothing.cpp, and simple_elasticity.cpp.

Definition at line 669 of file Simple.cpp.

669  {
670  Interface &m_field = cOre;
672  PetscLogEventBegin(MOFEM_EVENT_SimpleBuildProblem, 0, 0, 0, 0);
673  CHKERR m_field.build_adjacencies(bitLevel, bitLevelMask);
674  // Set problem by the DOFs on the fields rather that by adding DOFs on the
675  // elements
676  m_field.getInterface<ProblemsManager>()->buildProblemFromFields = PETSC_TRUE;
678  m_field.getInterface<ProblemsManager>()->buildProblemFromFields = PETSC_FALSE;
679  PetscLogEventEnd(MOFEM_EVENT_SimpleBuildProblem, 0, 0, 0, 0);
681 }

◆ createBoundaryMeshset()

MoFEMErrorCode MoFEM::Simple::createBoundaryMeshset ( )
private

Definition at line 791 of file Simple.cpp.

791  {
792  Interface &m_field = cOre;
794  ParallelComm *pcomm =
795  ParallelComm::get_pcomm(&m_field.get_moab(), MYPCOMM_INDEX);
796 
797  auto get_skin = [&](auto meshset) {
798  // filter not owned entities, those are not on boundary
799 
800  Range domain_ents;
801  CHKERR m_field.get_moab().get_entities_by_dimension(meshset, dIm,
802  domain_ents, true);
803  CHKERR pcomm->filter_pstatus(domain_ents,
804  PSTATUS_SHARED | PSTATUS_MULTISHARED,
805  PSTATUS_NOT, -1, nullptr);
806 
807  Skinner skin(&m_field.get_moab());
808  Range domain_skin;
809  CHKERR skin.find_skin(0, domain_ents, false, domain_skin);
810  CHKERR pcomm->filter_pstatus(domain_skin,
811  PSTATUS_SHARED | PSTATUS_MULTISHARED,
812  PSTATUS_NOT, -1, nullptr);
813  return domain_skin;
814  };
815 
816  auto create_boundary_meshset = [&](auto &&domain_skin) {
818  // create boundary meshset
819  if (boundaryMeshset != 0) {
821  }
822  CHKERR m_field.get_moab().create_meshset(MESHSET_SET, boundaryMeshset);
823  CHKERR m_field.get_moab().add_entities(boundaryMeshset, domain_skin);
824  for (int dd = 0; dd != dIm - 1; dd++) {
825  Range adj;
826  CHKERR m_field.get_moab().get_adjacencies(domain_skin, dd, false, adj,
827  moab::Interface::UNION);
828  CHKERR m_field.get_moab().add_entities(boundaryMeshset, adj);
829  }
831  };
832 
833  CHKERR create_boundary_meshset(get_skin(meshSet));
834 
836 }

◆ createSkeletonMeshset()

MoFEMErrorCode MoFEM::Simple::createSkeletonMeshset ( )
private

Definition at line 838 of file Simple.cpp.

838  {
839  Interface &m_field = cOre;
841 
842  ParallelComm *pcomm =
843  ParallelComm::get_pcomm(&m_field.get_moab(), MYPCOMM_INDEX);
844 
845  auto create_skeleton_meshset = [&](auto meshset) {
847  // create boundary meshset
848  if (skeletonMeshset != 0) {
850  }
851  Range boundary_ents, skeleton_ents;
852  CHKERR m_field.get_moab().get_entities_by_dimension(boundaryMeshset,
853  dIm - 1, boundary_ents);
854  Range domain_ents;
855  CHKERR m_field.get_moab().get_entities_by_dimension(meshset, dIm,
856  domain_ents, true);
857  CHKERR m_field.get_moab().get_adjacencies(
858  domain_ents, dIm - 1, false, skeleton_ents, moab::Interface::UNION);
859  skeleton_ents = subtract(skeleton_ents, boundary_ents);
860  CHKERR pcomm->filter_pstatus(skeleton_ents, PSTATUS_NOT_OWNED, PSTATUS_NOT,
861  -1, nullptr);
862  CHKERR m_field.get_moab().create_meshset(MESHSET_SET, skeletonMeshset);
863  CHKERR m_field.get_moab().add_entities(skeletonMeshset, skeleton_ents);
865  };
866 
867  CHKERR create_skeleton_meshset(meshSet);
868 
870 }

◆ defaultLoadFileFunc()

static MoFEMErrorCode MoFEM::Simple::defaultLoadFileFunc ( Interface m_field,
const char *  file_name,
const char *  options 
)
inlinestatic

Set function for loading mesh file.

Parameters
m_fieldinterface
file_namefile name
optionsloader options
Returns
error code

Definition at line 51 of file Simple.hpp.

53  {
54  // Default behavior using the member moab.load_file
55  return m_field.get_moab().load_file(file_name, 0, options);
56  }

◆ defineFiniteElements()

MoFEMErrorCode MoFEM::Simple::defineFiniteElements ( )

Define finite elements.

Returns
Error code
Examples
mesh_smoothing.cpp, and simple_elasticity.cpp.

Definition at line 452 of file Simple.cpp.

452  {
453  Interface &m_field = cOre;
455 
456  auto clear_rows_and_cols = [&](auto &fe_name) {
458  auto fe_ptr = m_field.get_finite_elements();
459  auto &fe_by_name = const_cast<FiniteElement_multiIndex *>(fe_ptr)
460  ->get<FiniteElement_name_mi_tag>();
461  auto it_fe = fe_by_name.find(fe_name);
462  if (it_fe != fe_by_name.end()) {
463 
464  if (!fe_by_name.modify(it_fe, FiniteElement_row_change_bit_reset()))
465  SETERRQ(m_field.get_comm(), MOFEM_OPERATION_UNSUCCESSFUL,
466  "modification unsuccessful");
467 
468  if (!fe_by_name.modify(it_fe, FiniteElement_col_change_bit_reset()))
469  SETERRQ(m_field.get_comm(), MOFEM_OPERATION_UNSUCCESSFUL,
470  "modification unsuccessful");
471  }
473  };
474  CHKERR clear_rows_and_cols(domainFE);
475  CHKERR clear_rows_and_cols(boundaryFE);
476  CHKERR clear_rows_and_cols(skeletonFE);
477 
478  // Define finite elements
479  CHKERR m_field.add_finite_element(domainFE, MF_ZERO);
480 
481  auto add_fields = [&](auto &fe_name, auto &fields) {
483  for (auto &field : fields) {
484  CHKERR m_field.modify_finite_element_add_field_row(fe_name, field);
485  CHKERR m_field.modify_finite_element_add_field_col(fe_name, field);
486  CHKERR m_field.modify_finite_element_add_field_data(fe_name, field);
487  }
489  };
490 
491  auto add_data_fields = [&](auto &fe_name, auto &fields) {
493  for (auto &field : fields)
494  CHKERR m_field.modify_finite_element_add_field_data(fe_name, field);
496  };
497 
498  CHKERR add_fields(domainFE, domainFields);
499  CHKERR add_data_fields(domainFE, dataFields);
500  CHKERR add_fields(domainFE, noFieldFields);
501  CHKERR add_data_fields(domainFE, noFieldDataFields);
502 
503  if (addBoundaryFE || !boundaryFields.empty()) {
504  CHKERR m_field.add_finite_element(boundaryFE, MF_ZERO);
505  CHKERR add_fields(boundaryFE, domainFields);
506  if (!boundaryFields.empty())
507  CHKERR add_fields(boundaryFE, boundaryFields);
508  CHKERR add_data_fields(boundaryFE, dataFields);
509  CHKERR add_data_fields(boundaryFE, noFieldDataFields);
510  CHKERR add_fields(boundaryFE, noFieldFields);
511  }
512  if (addSkeletonFE || !skeletonFields.empty()) {
513  CHKERR m_field.add_finite_element(skeletonFE, MF_ZERO);
514  CHKERR add_fields(skeletonFE, domainFields);
515  if (!skeletonFields.empty())
516  CHKERR add_fields(skeletonFE, skeletonFields);
517  CHKERR add_data_fields(skeletonFE, dataFields);
518  CHKERR add_data_fields(skeletonFE, noFieldDataFields);
519  CHKERR add_fields(skeletonFE, noFieldFields);
520  }
522 }

◆ defineProblem()

MoFEMErrorCode MoFEM::Simple::defineProblem ( const PetscBool  is_partitioned = PETSC_TRUE)

define problem

Returns
error code
Examples
mesh_smoothing.cpp, and simple_elasticity.cpp.

Definition at line 524 of file Simple.cpp.

524  {
525  Interface &m_field = cOre;
527  // Create dm instance
528  dM = createDM(m_field.get_comm(), "DMMOFEM");
529  // set dm data structure which created mofem data structures
530  CHKERR DMMoFEMCreateMoFEM(dM, &m_field, nameOfProblem.c_str(), bitLevel,
531  bitLevelMask);
532  CHKERR DMSetFromOptions(dM);
534  if (addBoundaryFE || !boundaryFields.empty()) {
536  }
537  if (addSkeletonFE || !skeletonFields.empty()) {
539  }
541  CHKERR DMMoFEMSetIsPartitioned(dM, is_partitioned);
543 }

◆ deleteDM()

MoFEMErrorCode MoFEM::Simple::deleteDM ( )

Delete dm.

Returns
MoFEMErrorCode

Definition at line 759 of file Simple.cpp.

759  {
761  dM.reset();
763 }

◆ deleteFiniteElements()

MoFEMErrorCode MoFEM::Simple::deleteFiniteElements ( )

Delete finite elements.

Returns
MoFEMErrorCode

Definition at line 770 of file Simple.cpp.

770  {
771  Interface &m_field = cOre;
773  for (auto fe : {domainFE, boundaryFE, skeletonFE}) {
774  if (m_field.check_finite_element(fe)) {
775  CHKERR m_field.delete_finite_element(fe);
776  }
777  }
779 }

◆ exchangeGhostCells()

MoFEMErrorCode MoFEM::Simple::exchangeGhostCells ( )
private

get all adjacent ghosted entities

Definition at line 872 of file Simple.cpp.

872  {
873  Interface &m_field = cOre;
875  MOFEM_LOG("WORLD", Sev::verbose) << "Exchange ghost cells";
876 
877  ParallelComm *pcomm =
878  ParallelComm::get_pcomm(&m_field.get_moab(), MYPCOMM_INDEX);
879  if (pcomm == NULL)
880  pcomm = new ParallelComm(&m_field.get_moab(), m_field.get_comm());
881 
882  CHKERR pcomm->exchange_ghost_cells(getDim(), getDim() - 1, 1,
883  3 /**get all adjacent ghosted entities */,
884  true, true, meshSet ? &meshSet : nullptr);
885 
886  Range shared;
887  CHKERR m_field.get_moab().get_entities_by_dimension(0, dIm, shared);
888  for (auto d = dIm - 1; d >= 0; --d) {
889  CHKERR m_field.get_moab().get_adjacencies(shared, d, false, shared,
890  moab::Interface::UNION);
891  }
892  CHKERR pcomm->filter_pstatus(shared, PSTATUS_SHARED | PSTATUS_MULTISHARED,
893  PSTATUS_OR, -1, &shared);
894  Tag part_tag = pcomm->part_tag();
895  CHKERR pcomm->exchange_tags(part_tag, shared);
896  CHKERR m_field.getInterface<CommInterface>()->resolveParentEntities(shared,
897  VERBOSE);
898 
900 }

◆ getAddBoundaryFE()

bool& MoFEM::Simple::getAddBoundaryFE ( )
inline

Get the addSkeletonFE.

If variable set to true, boundary element is created regardless field on skelton is added or not.

Returns
true
false
Examples
poisson_2d_dis_galerkin.cpp, and simple_l2_only.cpp.

Definition at line 463 of file Simple.hpp.

463 { return addBoundaryFE; }

◆ getAddSkeletonFE()

bool& MoFEM::Simple::getAddSkeletonFE ( )
inline

Get the addSkeletonFE.

If variable set to true, skeleton element is created regardless field on skelton is added or not.

Returns
true
false
Examples
continuity_check_on_skeleton_with_simple_2d_for_h1.cpp, poisson_2d_dis_galerkin.cpp, and simple_l2_only.cpp.

Definition at line 452 of file Simple.hpp.

452 { return addSkeletonFE; }

◆ getBitAdjEnt()

auto& MoFEM::Simple::getBitAdjEnt ( )
inline

bit ref level for parent

Returns
auto&

Definition at line 494 of file Simple.hpp.

494 { return bitAdjEnt; }

◆ getBitAdjEntMask()

auto& MoFEM::Simple::getBitAdjEntMask ( )
inline

bit ref level for parent parent

Returns
auto&

Definition at line 501 of file Simple.hpp.

501 { return bitAdjEntMask; }

◆ getBitAdjParent()

auto& MoFEM::Simple::getBitAdjParent ( )
inline

bit ref level for parent

Returns
auto&

Definition at line 480 of file Simple.hpp.

480 { return bitAdjParent; }

◆ getBitAdjParentMask()

auto& MoFEM::Simple::getBitAdjParentMask ( )
inline

bit ref level for parent parent

Returns
auto&

Definition at line 487 of file Simple.hpp.

487 { return bitAdjParentMask; }

◆ getBitRefLevel()

BitRefLevel& MoFEM::Simple::getBitRefLevel ( )
inline

Get the BitRefLevel.

Returns
BitRefLevel
Examples
child_and_parent.cpp, level_set.cpp, and mixed_poisson.cpp.

Definition at line 354 of file Simple.hpp.

354 { return bitLevel; }

◆ getBitRefLevelMask()

BitRefLevel& MoFEM::Simple::getBitRefLevelMask ( )
inline

Get the BitRefLevel.

Returns
BitRefLevel
Examples
child_and_parent.cpp.

Definition at line 361 of file Simple.hpp.

361 { return bitLevelMask; }

◆ getBoundaryFEName() [1/2]

std::string& MoFEM::Simple::getBoundaryFEName ( )
inline

Get the Boundary FE Name.

Returns
std::string&

Definition at line 403 of file Simple.hpp.

403 { return boundaryFE; }

◆ getBoundaryFEName() [2/2]

const std::string MoFEM::Simple::getBoundaryFEName ( ) const
inline

Get the Boundary FE Name.

Returns
const std::string
Examples
mesh_smoothing.cpp, and simple_interface.cpp.

Definition at line 375 of file Simple.hpp.

375 { return boundaryFE; }

◆ getBoundaryMeshSet()

EntityHandle& MoFEM::Simple::getBoundaryMeshSet ( )
inline

Get the BoundaryMeshSet object.

Returns
EntityHandle&

Definition at line 340 of file Simple.hpp.

340 { return boundaryMeshset; }

◆ getDim()

int MoFEM::Simple::getDim ( ) const
inline

Get the problem dimension.

Problem dimension is determined by highest dimension of entities on the mesh.

Returns
int
Examples
child_and_parent.cpp, and field_evaluator.cpp.

Definition at line 312 of file Simple.hpp.

312 { return dIm; }

◆ getDM() [1/2]

SmartPetscObj<DM> MoFEM::Simple::getDM ( )
inline

Return smart DM object.

{
auto dm = simple_interface->getDM();
// ...
// dm is automatically destroyed when out of the scope
}
Returns
SmartPetscObj<DM>

Definition at line 302 of file Simple.hpp.

302 { return dM; }

◆ getDM() [2/2]

MoFEMErrorCode MoFEM::Simple::getDM ( DM *  dm)

◆ getDomainFEName() [1/2]

std::string& MoFEM::Simple::getDomainFEName ( )
inline

Get the Domain FE Name.

Returns
std::string&

Definition at line 396 of file Simple.hpp.

396 { return domainFE; }

◆ getDomainFEName() [2/2]

const std::string MoFEM::Simple::getDomainFEName ( ) const
inline

◆ getMeshSet()

DEPRECATED EntityHandle& MoFEM::Simple::getMeshSet ( )
inline
Deprecated:
Use getMeshset
Returns
EntityHandle&

Definition at line 326 of file Simple.hpp.

326 { return meshSet; }

◆ getMeshset()

EntityHandle& MoFEM::Simple::getMeshset ( )
inline

Get the MeshSet object.

Returns
EntityHandle&

Definition at line 333 of file Simple.hpp.

333 { return meshSet; }

◆ getOptions()

MoFEMErrorCode MoFEM::Simple::getOptions ( )

◆ getOtherFiniteElements()

std::vector<std::string>& MoFEM::Simple::getOtherFiniteElements ( )
inline

Get the Other Finite Elements.

User can create finite elements using directly core interface and and them to simple problem by this function

Returns
std::vector<std::string>&
Examples
mesh_smoothing.cpp.

Definition at line 427 of file Simple.hpp.

427 { return otherFEs; }

◆ getParentAdjacencies()

bool& MoFEM::Simple::getParentAdjacencies ( )
inline

Get the addParentAdjacencies.

If set true add parent adjacencies

Returns
true
false

Definition at line 473 of file Simple.hpp.

473 { return addParentAdjacencies; }

◆ getProblemName() [1/2]

std::string& MoFEM::Simple::getProblemName ( )
inline

Get the Problem Name.

Returns
std::string&

Definition at line 417 of file Simple.hpp.

417 { return nameOfProblem; }

◆ getProblemName() [2/2]

const std::string MoFEM::Simple::getProblemName ( ) const
inline

Get the Problem Name.

Returns
const std::string
Examples
child_and_parent.cpp, poisson_2d_homogeneous.cpp, reaction_diffusion.cpp, and test_cache_on_entities.cpp.

Definition at line 389 of file Simple.hpp.

389 { return nameOfProblem; }

◆ getSkeletonFEName() [1/2]

std::string& MoFEM::Simple::getSkeletonFEName ( )
inline

Get the Skeleton FE Name.

Returns
std::string&

Definition at line 410 of file Simple.hpp.

410 { return skeletonFE; }

◆ getSkeletonFEName() [2/2]

const std::string MoFEM::Simple::getSkeletonFEName ( ) const
inline

◆ getSkeletonMeshSet()

EntityHandle& MoFEM::Simple::getSkeletonMeshSet ( )
inline

Get the SkeletonMeshSet object.

Returns
EntityHandle&

Definition at line 347 of file Simple.hpp.

347 { return skeletonMeshset; }

◆ loadFile() [1/2]

MoFEMErrorCode MoFEM::Simple::loadFile ( const std::string  mesh_file_name = "")

Load mesh file with parallel options if number of cores > 1.

Parameters
mesh_file_namefile name if not set default or set by command line is used.
Returns
error code

Definition at line 250 of file Simple.cpp.

250  {
252  Interface &m_field = cOre;
253  if (m_field.get_comm_size() == 1)
255  else
256  CHKERR loadFile("PARALLEL=READ_PART;"
257  "PARALLEL_RESOLVE_SHARED_ENTS;"
258  "PARTITION=PARALLEL_PARTITION;",
259  meshFileName);
261 }

◆ loadFile() [2/2]

MoFEMErrorCode MoFEM::Simple::loadFile ( const std::string  options,
const std::string  mesh_file_name,
LoadFileFunc  loadFunc = defaultLoadFileFunc 
)

Load mesh file.

Parameters
optionsfile load options
mesh_file_namefile name if not set default or set by command line
loadFuncfunction for loading mesh file is used.
Note
If bitRefLevel is set to any, bit ref level of loaded entities is not changed. After mesh is load, bit ref level should be set to create problem. Default setting of bit ref level is on first bit, and if is set all mesh entities on load are set to set level.
Returns
error code
Examples
child_and_parent.cpp, continuity_check_on_skeleton_with_simple_2d_for_h1.cpp, continuity_check_on_skeleton_with_simple_2d_for_hcurl.cpp, continuity_check_on_skeleton_with_simple_2d_for_hdiv.cpp, field_evaluator.cpp, hcurl_check_approx_in_2d.cpp, hcurl_curl_operator.cpp, hdiv_divergence_operator.cpp, loop_entities.cpp, mesh_smoothing.cpp, mixed_poisson.cpp, poisson_2d_dis_galerkin.cpp, poisson_2d_homogeneous.cpp, reaction_diffusion.cpp, simple_elasticity.cpp, simple_interface.cpp, simple_l2_only.cpp, test_cache_on_entities.cpp, testing_jacobian_of_hook_element.cpp, and testing_jacobian_of_hook_scaled_with_density_element.cpp.

Definition at line 194 of file Simple.cpp.

196  {
197  Interface &m_field = cOre;
199  PetscLogEventBegin(MOFEM_EVENT_SimpleLoadMesh, 0, 0, 0, 0);
200 
201  if (!mesh_file_name.empty())
202  strcpy(meshFileName, mesh_file_name.c_str());
203 
204  // Invoke the boost function, passing in required arguments
205  CHKERR loadFunc(m_field, meshFileName, options.c_str());
206  CHKERR m_field.rebuild_database();
207 
208  // determine problem dimension
209  if (dIm == -1) {
210  int nb_ents_3d;
211  CHKERR m_field.get_moab().get_number_entities_by_dimension(
212  meshSet, 3, nb_ents_3d, true);
213  if (nb_ents_3d > 0) {
214  dIm = 3;
215  } else {
216  int nb_ents_2d;
217  CHKERR m_field.get_moab().get_number_entities_by_dimension(
218  meshSet, 2, nb_ents_2d, true);
219  if (nb_ents_2d > 0) {
220  dIm = 2;
221  } else {
222  dIm = 1;
223  }
224  }
225  }
226 
227  if (!boundaryMeshset)
229  if (!skeletonMeshset)
231  if (addSkeletonFE)
233 
234  if (bitLevel.any()) {
235  Range ents;
236  CHKERR m_field.get_moab().get_entities_by_dimension(meshSet, dIm, ents,
237  true);
238  CHKERR m_field.getInterface<BitRefManager>()->setBitRefLevel(ents, bitLevel,
239  false);
240  } else {
241  MOFEM_LOG("WORLD", Sev::warning) << "BitRefLevel is none and not set";
242  CHKERR m_field.getInterface<BitRefManager>()->addToDatabaseBitRefLevelByDim(
243  dIm, BitRefLevel().set(), BitRefLevel().set());
244  }
245 
246  PetscLogEventEnd(MOFEM_EVENT_SimpleLoadMesh, 0, 0, 0, 0);
248 }

◆ query_interface()

MoFEMErrorCode MoFEM::Simple::query_interface ( boost::typeindex::type_index  type_index,
UnknownInterface **  iface 
) const
virtual

Implements MoFEM::UnknownInterface.

Definition at line 8 of file Simple.cpp.

9  {
10  *iface = const_cast<Simple *>(this);
11  return 0;
12 }

◆ removeBoundaryField()

MoFEMErrorCode MoFEM::Simple::removeBoundaryField ( const std::string &  name)

Remove field form boundary.

Parameters
name
Returns
MoFEMErrorCode

Definition at line 424 of file Simple.cpp.

424  {
426 
427  auto remove_field_from_list = [&](auto &vec) {
428  auto it = std::find(vec.begin(), vec.end(), name);
429  if (it != vec.end())
430  vec.erase(it);
431  };
432 
433  remove_field_from_list(boundaryFields);
434 
436 }

◆ removeDomainField()

MoFEMErrorCode MoFEM::Simple::removeDomainField ( const std::string &  name)

Remove field form domain.

Parameters
name
Returns
MoFEMErrorCode

Definition at line 409 of file Simple.cpp.

409  {
411 
412  auto remove_field_from_list = [&](auto &vec) {
413  auto it = std::find(vec.begin(), vec.end(), name);
414  if (it != vec.end())
415  vec.erase(it);
416  };
417 
418  remove_field_from_list(noFieldFields);
419  remove_field_from_list(domainFields);
420 
422 }

◆ removeSkeletonField()

MoFEMErrorCode MoFEM::Simple::removeSkeletonField ( const std::string &  name)

Remove field form skeleton.

Parameters
name
Returns
MoFEMErrorCode

Definition at line 438 of file Simple.cpp.

438  {
440 
441  auto remove_field_from_list = [&](auto &vec) {
442  auto it = std::find(vec.begin(), vec.end(), name);
443  if (it != vec.end())
444  vec.erase(it);
445  };
446 
447  remove_field_from_list(skeletonFields);
448 
450 }

◆ reSetUp()

MoFEMErrorCode MoFEM::Simple::reSetUp ( bool  only_dm = false)

Rebuild internal MoFEM data structures.

Call this function after you add field or remove it.

Note
If you add field, or remove it, finite element and problem needs to be rebuild. However DM can remain the same.
Returns
MoFEMErrorCode
Examples
child_and_parent.cpp.

Definition at line 709 of file Simple.cpp.

709  {
710  Interface &m_field = cOre;
712  PetscLogEventBegin(MOFEM_EVENT_SimpleBuildProblem, 0, 0, 0, 0);
713 
714  if (!only_dm) {
717  if (addSkeletonFE || !skeletonFields.empty()) {
719  if (addBoundaryFE || !boundaryFields.empty()) {
721  }
722  }
726  }
727 
728  CHKERR m_field.build_adjacencies(bitLevel, bitLevelMask);
729 
730  const Problem *problem_ptr;
731  CHKERR DMMoFEMGetProblemPtr(dM, &problem_ptr);
732  const auto problem_name = problem_ptr->getName();
733  CHKERR m_field.modify_problem_ref_level_set_bit(problem_name, bitLevel);
734  CHKERR m_field.modify_problem_mask_ref_level_set_bit(problem_name,
735  bitLevelMask);
736 
737  // Set problem by the DOFs on the fields rather that by adding DOFs on the
738  // elements
739  m_field.getInterface<ProblemsManager>()->buildProblemFromFields = PETSC_TRUE;
741  m_field.getInterface<ProblemsManager>()->buildProblemFromFields = PETSC_FALSE;
742 
743  PetscLogEventEnd(MOFEM_EVENT_SimpleBuildProblem, 0, 0, 0, 0);
745 }

◆ setDim()

void MoFEM::Simple::setDim ( int  dim)
inline

Set the problem dimension.

Returns
int

Definition at line 319 of file Simple.hpp.

319 { dIm = dim; };

◆ setFieldOrder()

MoFEMErrorCode MoFEM::Simple::setFieldOrder ( const std::string  field_name,
const int  order,
const Range ents = NULL 
)

◆ setParentAdjacency() [1/4]

template<>
MoFEMErrorCode MoFEM::Simple::setParentAdjacency ( )
private

Definition at line 72 of file Simple.cpp.

72  {
73  Interface &m_field = cOre;
75 
77  boost::make_shared<ParentFiniteElementAdjacencyFunction<3>>(
80  boost::make_shared<ParentFiniteElementAdjacencyFunction<2>>(
82 
83  CHKERR m_field.modify_finite_element_adjacency_table(domainFE, MBTET,
85  CHKERR m_field.modify_finite_element_adjacency_table(domainFE, MBHEX,
87  if (addBoundaryFE || !boundaryFields.empty()) {
88  CHKERR m_field.modify_finite_element_adjacency_table(
90  CHKERR m_field.modify_finite_element_adjacency_table(
92  }
93  if (addSkeletonFE || !skeletonFields.empty()) {
94  CHKERR m_field.modify_finite_element_adjacency_table(
96  CHKERR m_field.modify_finite_element_adjacency_table(
98  }
99 
101 }

◆ setParentAdjacency() [2/4]

template<>
MoFEMErrorCode MoFEM::Simple::setParentAdjacency ( )
private

Definition at line 103 of file Simple.cpp.

103  {
104  Interface &m_field = cOre;
106 
108  boost::make_shared<ParentFiniteElementAdjacencyFunction<2>>(
111  boost::make_shared<ParentFiniteElementAdjacencyFunction<1>>(
113 
114  CHKERR m_field.modify_finite_element_adjacency_table(domainFE, MBTRI,
116  CHKERR m_field.modify_finite_element_adjacency_table(domainFE, MBQUAD,
118  if (addBoundaryFE || !boundaryFields.empty())
119  CHKERR m_field.modify_finite_element_adjacency_table(
121  if (addSkeletonFE || !skeletonFields.empty())
122  CHKERR m_field.modify_finite_element_adjacency_table(
124 
126 }

◆ setParentAdjacency() [3/4]

template<>
MoFEMErrorCode MoFEM::Simple::setParentAdjacency ( )
private

Definition at line 128 of file Simple.cpp.

128  {
130  switch (getDim()) {
131  case 1:
132  THROW_MESSAGE("Not implemented");
133  case 2:
134  return setParentAdjacency<2>();
135  case 3:
136  return setParentAdjacency<3>();
137  default:
138  THROW_MESSAGE("Not implemented");
139  }
141 }

◆ setParentAdjacency() [4/4]

template<int DIM>
MoFEMErrorCode MoFEM::Simple::setParentAdjacency
private

Definition at line 67 of file Simple.cpp.

67  {
68  static_assert(DIM == 2 || DIM == 3, "not implemented");
69  return MOFEM_NOT_IMPLEMENTED;
70 }

◆ setSkeletonAdjacency() [1/5]

MoFEMErrorCode MoFEM::Simple::setSkeletonAdjacency ( int  dim = -1,
std::string  fe_name = "" 
)

Set the skeleton adjacency object.

Parameters
dim
fe_name
Returns
MoFEMErrorCode

Definition at line 143 of file Simple.cpp.

143  {
145  if (dim == -1)
146  dim = getDim();
147 
148  if (fe_name.empty())
149  fe_name = skeletonFE;
150 
151  switch (dim) {
152  case 2:
153  return setSkeletonAdjacency<2>(fe_name);
154  case 3:
155  return setSkeletonAdjacency<3>(fe_name);
156  default:
157  SETERRQ(PETSC_COMM_WORLD, MOFEM_NOT_IMPLEMENTED, "Not implemented");
158  }
160 }

◆ setSkeletonAdjacency() [2/5]

template<>
MoFEMErrorCode MoFEM::Simple::setSkeletonAdjacency ( std::string  fe_name)
private

Definition at line 21 of file Simple.cpp.

21  {
22  Interface &m_field = cOre;
24 
26  boost::make_shared<ParentFiniteElementAdjacencyFunctionSkeleton<1>>(
28  CHKERR m_field.modify_finite_element_adjacency_table(
29  fe_name, MBEDGE, *parentAdjSkeletonFunctionDim1);
30 
32 }

◆ setSkeletonAdjacency() [3/5]

template<>
MoFEMErrorCode MoFEM::Simple::setSkeletonAdjacency ( std::string  fe_name)
private

Definition at line 35 of file Simple.cpp.

35  {
36  Interface &m_field = cOre;
38 
40  boost::make_shared<ParentFiniteElementAdjacencyFunctionSkeleton<2>>(
42 
43  CHKERR m_field.modify_finite_element_adjacency_table(
44  fe_name, MBTRI, *parentAdjSkeletonFunctionDim2);
45  CHKERR m_field.modify_finite_element_adjacency_table(
46  fe_name, MBQUAD, *parentAdjSkeletonFunctionDim2);
47 
49 }

◆ setSkeletonAdjacency() [4/5]

template<>
MoFEMErrorCode MoFEM::Simple::setSkeletonAdjacency ( std::string  fe_name)
private

Definition at line 52 of file Simple.cpp.

52  {
54 
55  switch (getDim()) {
56  case 1:
57  THROW_MESSAGE("Not implemented");
58  case 2:
59  return setSkeletonAdjacency<2>(fe_name);
60  case 3:
61  return setSkeletonAdjacency<3>(fe_name);
62  default:
63  THROW_MESSAGE("Not implemented");
64  }
66 }

◆ setSkeletonAdjacency() [5/5]

template<int DIM>
MoFEMErrorCode MoFEM::Simple::setSkeletonAdjacency ( std::string  fe_name)
private

Definition at line 15 of file Simple.cpp.

15  {
16  static_assert(DIM == 2 || DIM == 3, "not implemented");
17  return MOFEM_NOT_IMPLEMENTED;
18 }

◆ setUp()

MoFEMErrorCode MoFEM::Simple::setUp ( const PetscBool  is_partitioned = PETSC_TRUE)

Member Data Documentation

◆ addBoundaryFE

bool MoFEM::Simple::addBoundaryFE
private

Add boundary FE.

Definition at line 535 of file Simple.hpp.

◆ addParentAdjacencies

bool MoFEM::Simple::addParentAdjacencies
private

If set to true parent adjacencies are build.

Definition at line 536 of file Simple.hpp.

◆ addSkeletonFE

bool MoFEM::Simple::addSkeletonFE
private

Add skeleton FE.

Definition at line 534 of file Simple.hpp.

◆ bitAdjEnt

BitRefLevel MoFEM::Simple::bitAdjEnt
private

bit ref level for parent

Definition at line 540 of file Simple.hpp.

◆ bitAdjEntMask

BitRefLevel MoFEM::Simple::bitAdjEntMask
private

bit ref level for parent parent

Definition at line 541 of file Simple.hpp.

◆ bitAdjParent

BitRefLevel MoFEM::Simple::bitAdjParent
private

bit ref level for parent

Definition at line 538 of file Simple.hpp.

◆ bitAdjParentMask

BitRefLevel MoFEM::Simple::bitAdjParentMask
private

bit ref level for parent parent

Definition at line 539 of file Simple.hpp.

◆ bitLevel

BitRefLevel MoFEM::Simple::bitLevel
private

BitRefLevel of the problem.

Definition at line 520 of file Simple.hpp.

◆ bitLevelMask

BitRefLevel MoFEM::Simple::bitLevelMask
private

BitRefLevel of the problem.

Definition at line 521 of file Simple.hpp.

◆ boundaryFE

std::string MoFEM::Simple::boundaryFE
private

boundary finite element

Definition at line 556 of file Simple.hpp.

◆ boundaryFields

std::vector<std::string> MoFEM::Simple::boundaryFields
private

boundary fields

Definition at line 544 of file Simple.hpp.

◆ boundaryMeshset

EntityHandle MoFEM::Simple::boundaryMeshset
private

meshset with boundary

Definition at line 531 of file Simple.hpp.

◆ cOre

MoFEM::Core& MoFEM::Simple::cOre
private

Definition at line 518 of file Simple.hpp.

◆ dataFields

std::vector<std::string> MoFEM::Simple::dataFields
private

Data fields.

Definition at line 546 of file Simple.hpp.

◆ dIm

int MoFEM::Simple::dIm
private

dimension of problem

Definition at line 562 of file Simple.hpp.

◆ dM

SmartPetscObj<DM> MoFEM::Simple::dM
private

Discrete manager (interface to PETSc/MoFEM functions)

Definition at line 565 of file Simple.hpp.

◆ domainFE

std::string MoFEM::Simple::domainFE
private

domain finite element

Definition at line 555 of file Simple.hpp.

◆ domainFields

std::vector<std::string> MoFEM::Simple::domainFields
private

domain fields

Definition at line 543 of file Simple.hpp.

◆ fieldsOrder

std::list<std::tuple<std::string, int, Range, bool> > MoFEM::Simple::fieldsOrder
private

fields order. 1: field name, order, range, set by range if true

Definition at line 551 of file Simple.hpp.

◆ meshFileName

char MoFEM::Simple::meshFileName[255]
private

mesh file name

Definition at line 561 of file Simple.hpp.

◆ meshSet

EntityHandle MoFEM::Simple::meshSet
private

domain meshset

Definition at line 530 of file Simple.hpp.

◆ MOFEM_EVENT_SimpleBuildFields

PetscLogEvent MoFEM::Simple::MOFEM_EVENT_SimpleBuildFields
private

Definition at line 525 of file Simple.hpp.

◆ MOFEM_EVENT_SimpleBuildFiniteElements

PetscLogEvent MoFEM::Simple::MOFEM_EVENT_SimpleBuildFiniteElements
private

Definition at line 526 of file Simple.hpp.

◆ MOFEM_EVENT_SimpleBuildProblem

PetscLogEvent MoFEM::Simple::MOFEM_EVENT_SimpleBuildProblem
private

Definition at line 527 of file Simple.hpp.

◆ MOFEM_EVENT_SimpleKSPSolve

PetscLogEvent MoFEM::Simple::MOFEM_EVENT_SimpleKSPSolve
private

Definition at line 528 of file Simple.hpp.

◆ MOFEM_EVENT_SimpleLoadMesh

PetscLogEvent MoFEM::Simple::MOFEM_EVENT_SimpleLoadMesh
private

Definition at line 524 of file Simple.hpp.

◆ MOFEM_EVENT_SimpleSetUP

PetscLogEvent MoFEM::Simple::MOFEM_EVENT_SimpleSetUP
private

Definition at line 523 of file Simple.hpp.

◆ nameOfProblem

std::string MoFEM::Simple::nameOfProblem
private

problem name

Definition at line 554 of file Simple.hpp.

◆ noFieldDataFields

std::vector<std::string> MoFEM::Simple::noFieldDataFields
private

NOFIELD field name.

Definition at line 548 of file Simple.hpp.

◆ noFieldFields

std::vector<std::string> MoFEM::Simple::noFieldFields
private

NOFIELD field name.

Definition at line 547 of file Simple.hpp.

◆ otherFEs

std::vector<std::string> MoFEM::Simple::otherFEs
private

Other finite elements.

Definition at line 559 of file Simple.hpp.

◆ parentAdjFunctionDim1

boost::shared_ptr<ParentFiniteElementAdjacencyFunction<1> > MoFEM::Simple::parentAdjFunctionDim1
private

Definition at line 581 of file Simple.hpp.

◆ parentAdjFunctionDim2

boost::shared_ptr<ParentFiniteElementAdjacencyFunction<2> > MoFEM::Simple::parentAdjFunctionDim2
private

Definition at line 579 of file Simple.hpp.

◆ parentAdjFunctionDim3

boost::shared_ptr<ParentFiniteElementAdjacencyFunction<3> > MoFEM::Simple::parentAdjFunctionDim3
private

Definition at line 577 of file Simple.hpp.

◆ parentAdjSkeletonFunctionDim1

boost::shared_ptr<ParentFiniteElementAdjacencyFunctionSkeleton<1> > MoFEM::Simple::parentAdjSkeletonFunctionDim1
private

Definition at line 586 of file Simple.hpp.

◆ parentAdjSkeletonFunctionDim2

boost::shared_ptr<ParentFiniteElementAdjacencyFunctionSkeleton<2> > MoFEM::Simple::parentAdjSkeletonFunctionDim2
private

Definition at line 584 of file Simple.hpp.

◆ skeletonFE

std::string MoFEM::Simple::skeletonFE
private

skeleton finite element

Definition at line 557 of file Simple.hpp.

◆ skeletonFields

std::vector<std::string> MoFEM::Simple::skeletonFields
private

fields on the skeleton

Definition at line 545 of file Simple.hpp.

◆ skeletonMeshset

EntityHandle MoFEM::Simple::skeletonMeshset
private

skeleton meshset with boundary

Definition at line 532 of file Simple.hpp.


The documentation for this struct was generated from the following files:
MoFEMFunctionReturnHot
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:460
MoFEM::Simple::boundaryFields
std::vector< std::string > boundaryFields
boundary fields
Definition: Simple.hpp:544
MoFEM::Simple::parentAdjFunctionDim1
boost::shared_ptr< ParentFiniteElementAdjacencyFunction< 1 > > parentAdjFunctionDim1
Definition: Simple.hpp:581
MoFEM::Simple::setSkeletonAdjacency
MoFEMErrorCode setSkeletonAdjacency(int dim=-1, std::string fe_name="")
Set the skeleton adjacency object.
Definition: Simple.cpp:143
MYPCOMM_INDEX
#define MYPCOMM_INDEX
default communicator number PCOMM
Definition: definitions.h:228
MoFEM::Simple::otherFEs
std::vector< std::string > otherFEs
Other finite elements.
Definition: Simple.hpp:559
H1
@ H1
continuous field
Definition: definitions.h:85
MoFEM::Simple::addParentAdjacencies
bool addParentAdjacencies
If set to true parent adjacencies are build.
Definition: Simple.hpp:536
MoFEM::Simple::addBoundaryFE
bool addBoundaryFE
Add boundary FE.
Definition: Simple.hpp:535
MOFEM_LOG_SEVERITY_SYNC
#define MOFEM_LOG_SEVERITY_SYNC(comm, severity)
Synchronise "SYNC" on curtain severity level.
Definition: LogManager.hpp:352
MoFEM::Simple::exchangeGhostCells
MoFEMErrorCode exchangeGhostCells()
Definition: Simple.cpp:872
MoFEM::Simple::fieldsOrder
std::list< std::tuple< std::string, int, Range, bool > > fieldsOrder
Definition: Simple.hpp:551
MOFEM_LOG_CHANNEL
#define MOFEM_LOG_CHANNEL(channel)
Set and reset channel.
Definition: LogManager.hpp:284
MoFEM::Simple::Simple
Simple(const MoFEM::Core &core)
Definition: Simple.cpp:162
MoFEM::Simple::parentAdjFunctionDim2
boost::shared_ptr< ParentFiniteElementAdjacencyFunction< 2 > > parentAdjFunctionDim2
Definition: Simple.hpp:579
MoFEM::Simple::noFieldFields
std::vector< std::string > noFieldFields
NOFIELD field name.
Definition: Simple.hpp:547
MoFEM::BaseFunction::DofsSideMap
multi_index_container< DofsSideMapData, indexed_by< ordered_non_unique< tag< TypeSide_mi_tag >, composite_key< DofsSideMapData, member< DofsSideMapData, EntityType, &DofsSideMapData::type >, member< DofsSideMapData, int, &DofsSideMapData::side > >>, ordered_unique< tag< EntDofIdx_mi_tag >, member< DofsSideMapData, int, &DofsSideMapData::dof > > > > DofsSideMap
Map entity stype and side to element/entity dof index.
Definition: BaseFunction.hpp:73
MoFEM::Simple::meshSet
EntityHandle meshSet
domain meshset
Definition: Simple.hpp:530
MoFEM::Simple::createBoundaryMeshset
MoFEMErrorCode createBoundaryMeshset()
Definition: Simple.cpp:791
MoFEM::Simple::meshFileName
char meshFileName[255]
mesh file name
Definition: Simple.hpp:561
MoFEM::Simple::MOFEM_EVENT_SimpleKSPSolve
PetscLogEvent MOFEM_EVENT_SimpleKSPSolve
Definition: Simple.hpp:528
MoFEM::Simple::buildProblem
MoFEMErrorCode buildProblem()
Build problem.
Definition: Simple.cpp:669
MoFEM::Exceptions::MoFEMErrorCode
PetscErrorCode MoFEMErrorCode
MoFEM/PETSc error code.
Definition: Exceptions.hpp:56
MoFEM::Simple::MOFEM_EVENT_SimpleBuildFields
PetscLogEvent MOFEM_EVENT_SimpleBuildFields
Definition: Simple.hpp:525
MoFEM::getPetscObject
PetscObject getPetscObject(T obj)
Definition: PetscSmartObj.hpp:9
MoFEM::Simple::loadFile
MoFEMErrorCode loadFile(const std::string options, const std::string mesh_file_name, LoadFileFunc loadFunc=defaultLoadFileFunc)
Load mesh file.
Definition: Simple.cpp:194
MoFEM::DMSetUp_MoFEM
PetscErrorCode DMSetUp_MoFEM(DM dm)
Definition: DMMoFEM.cpp:1303
MoFEM::Simple::dIm
int dIm
dimension of problem
Definition: Simple.hpp:562
MoFEM::Simple::addSkeletonFE
bool addSkeletonFE
Add skeleton FE.
Definition: Simple.hpp:534
MoFEM::Simple::nameOfProblem
std::string nameOfProblem
problem name
Definition: Simple.hpp:554
MoFEM::Simple::parentAdjSkeletonFunctionDim2
boost::shared_ptr< ParentFiniteElementAdjacencyFunctionSkeleton< 2 > > parentAdjSkeletonFunctionDim2
Definition: Simple.hpp:584
THROW_MESSAGE
#define THROW_MESSAGE(msg)
Throw MoFEM exception.
Definition: definitions.h:574
MoFEM::DMMoFEMAddElement
PetscErrorCode DMMoFEMAddElement(DM dm, std::string fe_name)
add element to dm
Definition: DMMoFEM.cpp:497
order
constexpr int order
Definition: dg_projection.cpp:18
MoFEM::Interface
DeprecatedCoreInterface Interface
Definition: Interface.hpp:2010
MoFEM::Simple::MOFEM_EVENT_SimpleLoadMesh
PetscLogEvent MOFEM_EVENT_SimpleLoadMesh
Definition: Simple.hpp:524
MoFEM::Simple::bitLevelMask
BitRefLevel bitLevelMask
BitRefLevel of the problem.
Definition: Simple.hpp:521
MoFEM::Simple::dataFields
std::vector< std::string > dataFields
Data fields.
Definition: Simple.hpp:546
VERBOSE
@ VERBOSE
Definition: definitions.h:222
CHKERR
#define CHKERR
Inline error check.
Definition: definitions.h:548
MoFEM::Simple::bitAdjEntMask
BitRefLevel bitAdjEntMask
bit ref level for parent parent
Definition: Simple.hpp:541
MoFEM::createDM
auto createDM(MPI_Comm comm, const std::string dm_type_name)
Creates smart DM object.
Definition: PetscSmartObj.hpp:141
MoFEM::Simple::domainFE
std::string domainFE
domain finite element
Definition: Simple.hpp:555
MoFEM::Simple::MOFEM_EVENT_SimpleBuildFiniteElements
PetscLogEvent MOFEM_EVENT_SimpleBuildFiniteElements
Definition: Simple.hpp:526
MoFEM::Simple::createSkeletonMeshset
MoFEMErrorCode createSkeletonMeshset()
Definition: Simple.cpp:838
MoFEM::TriPolynomialBase::setDofsSideMap
static MoFEMErrorCode setDofsSideMap(const FieldSpace space, const FieldContinuity continuity, const FieldApproximationBase base, DofsSideMap &)
Set map of dof to side number.
Definition: TriPolynomialBase.cpp:1228
MoFEM::Simple::boundaryFE
std::string boundaryFE
boundary finite element
Definition: Simple.hpp:556
MoFEM::Simple::parentAdjFunctionDim3
boost::shared_ptr< ParentFiniteElementAdjacencyFunction< 3 > > parentAdjFunctionDim3
Definition: Simple.hpp:577
MoFEM::Simple::bitAdjParentMask
BitRefLevel bitAdjParentMask
bit ref level for parent parent
Definition: Simple.hpp:539
MoFEM::Simple::skeletonFE
std::string skeletonFE
skeleton finite element
Definition: Simple.hpp:557
MOFEM_OPERATION_UNSUCCESSFUL
@ MOFEM_OPERATION_UNSUCCESSFUL
Definition: definitions.h:34
MoFEM::Simple::bitAdjEnt
BitRefLevel bitAdjEnt
bit ref level for parent
Definition: Simple.hpp:540
t
constexpr double t
plate stiffness
Definition: plate.cpp:58
MoFEM::DMMoFEMCreateMoFEM
PetscErrorCode DMMoFEMCreateMoFEM(DM dm, MoFEM::Interface *m_field_ptr, const char problem_name[], const MoFEM::BitRefLevel bit_level, const MoFEM::BitRefLevel bit_mask=MoFEM::BitRefLevel().set())
Must be called by user to set MoFEM data structures.
Definition: DMMoFEM.cpp:114
field_name
constexpr auto field_name
Definition: poisson_2d_homogeneous.cpp:13
AINSWORTH_BERNSTEIN_BEZIER_BASE
@ AINSWORTH_BERNSTEIN_BEZIER_BASE
Definition: definitions.h:64
mesh_file_name
char mesh_file_name[255]
Definition: mesh_smoothing.cpp:22
MoFEM::Simple::buildFiniteElements
MoFEMErrorCode buildFiniteElements()
Build finite elements.
Definition: Simple.cpp:643
Range
MoFEM::TetPolynomialBase::setDofsSideMap
static MoFEMErrorCode setDofsSideMap(const FieldSpace space, const FieldContinuity continuity, const FieldApproximationBase base, DofsSideMap &)
Set map of dof to side number.
Definition: TetPolynomialBase.cpp:2102
FTensor::dd
const Tensor2_symmetric_Expr< const ddTensor0< T, Dim, i, j >, typename promote< T, double >::V, Dim, i, j > dd(const Tensor0< T * > &a, const Index< i, Dim > index1, const Index< j, Dim > index2, const Tensor1< int, Dim > &d_ijk, const Tensor1< double, Dim > &d_xyz)
Definition: ddTensor0.hpp:33
MF_ZERO
@ MF_ZERO
Definition: definitions.h:111
MOFEM_TAG_AND_LOG
#define MOFEM_TAG_AND_LOG(channel, severity, tag)
Tag and log in channel.
Definition: LogManager.hpp:362
MOFEM_LOG
#define MOFEM_LOG(channel, severity)
Log.
Definition: LogManager.hpp:308
MoFEM::Simple::domainFields
std::vector< std::string > domainFields
domain fields
Definition: Simple.hpp:543
MoFEM::Core
CoreTmp< 0 > Core
Definition: Core.hpp:1148
HenckyOps::f
auto f
Definition: HenckyOps.hpp:15
DISCONTINUOUS
@ DISCONTINUOUS
Broken continuity (No effect on L2 space)
Definition: definitions.h:101
MoFEM::Simple::skeletonFields
std::vector< std::string > skeletonFields
fields on the skeleton
Definition: Simple.hpp:545
MoFEM::Exceptions::ierr
static MoFEMErrorCodeGeneric< PetscErrorCode > ierr
Definition: Exceptions.hpp:76
HCURL
@ HCURL
field with continuous tangents
Definition: definitions.h:86
MoFEM::DMMoFEMGetProblemPtr
PetscErrorCode DMMoFEMGetProblemPtr(DM dm, const MoFEM::Problem **problem_ptr)
Get pointer to problem data structure.
Definition: DMMoFEM.cpp:426
MoFEM::Simple::bitLevel
BitRefLevel bitLevel
BitRefLevel of the problem.
Definition: Simple.hpp:520
MoFEM::Simple::defineFiniteElements
MoFEMErrorCode defineFiniteElements()
Define finite elements.
Definition: Simple.cpp:452
MoFEM::Simple::getDim
int getDim() const
Get the problem dimension.
Definition: Simple.hpp:312
MoFEM::Simple::buildFields
MoFEMErrorCode buildFields()
Build fields.
Definition: Simple.cpp:554
MoFEM::Simple::bitAdjParent
BitRefLevel bitAdjParent
bit ref level for parent
Definition: Simple.hpp:538
MoFEM::Simple::noFieldDataFields
std::vector< std::string > noFieldDataFields
NOFIELD field name.
Definition: Simple.hpp:548
sdf_hertz_2d_axisymm_plane.d
float d
Definition: sdf_hertz_2d_axisymm_plane.py:4
FiniteElement_multiIndex
multi_index_container< boost::shared_ptr< FiniteElement >, indexed_by< hashed_unique< tag< FiniteElement_Meshset_mi_tag >, member< FiniteElement, EntityHandle, &FiniteElement::meshset > >, hashed_unique< tag< BitFEId_mi_tag >, const_mem_fun< FiniteElement, BitFEId, &FiniteElement::getId >, HashBit< BitFEId >, EqBit< BitFEId > >, ordered_unique< tag< FiniteElement_name_mi_tag >, const_mem_fun< FiniteElement, boost::string_ref, &FiniteElement::getNameRef > > > > FiniteElement_multiIndex
MultiIndex for entities for FiniteElement.
Definition: FEMultiIndices.hpp:849
MoFEM::Simple::boundaryMeshset
EntityHandle boundaryMeshset
meshset with boundary
Definition: Simple.hpp:531
MoFEM::Simple::parentAdjSkeletonFunctionDim1
boost::shared_ptr< ParentFiniteElementAdjacencyFunctionSkeleton< 1 > > parentAdjSkeletonFunctionDim1
Definition: Simple.hpp:586
MoFEM::Types::BitRefLevel
std::bitset< BITREFLEVEL_SIZE > BitRefLevel
Bit structure attached to each entity identifying to what mesh entity is attached.
Definition: Types.hpp:40
MoFEMFunctionBeginHot
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:453
MoFEM::Simple::defineProblem
MoFEMErrorCode defineProblem(const PetscBool is_partitioned=PETSC_TRUE)
define problem
Definition: Simple.cpp:524
MoFEM::Simple::dM
SmartPetscObj< DM > dM
Discrete manager (interface to PETSc/MoFEM functions)
Definition: Simple.hpp:565
MoFEM::Simple::setParentAdjacency
MoFEMErrorCode setParentAdjacency()
Definition: Simple.cpp:67
MoFEM::Simple::getProblemName
const std::string getProblemName() const
Get the Problem Name.
Definition: Simple.hpp:389
MoFEM::Simple::addFieldToEmptyFieldBlocks
MoFEMErrorCode addFieldToEmptyFieldBlocks(const std::string row_field, const std::string col_field) const
add empty block to problem
Definition: Simple.cpp:782
MoFEM::Simple::cOre
MoFEM::Core & cOre
Definition: Simple.hpp:518
MoFEMFunctionReturn
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:429
MoFEM::Simple::skeletonMeshset
EntityHandle skeletonMeshset
skeleton meshset with boundary
Definition: Simple.hpp:532
MoFEM::Simple::MOFEM_EVENT_SimpleSetUP
PetscLogEvent MOFEM_EVENT_SimpleSetUP
Definition: Simple.hpp:523
HDIV
@ HDIV
field with continuous normal traction
Definition: definitions.h:87
MOFEM_NOT_IMPLEMENTED
@ MOFEM_NOT_IMPLEMENTED
Definition: definitions.h:32
CHKERRG
#define CHKERRG(n)
Check error code of MoFEM/MOAB/PETSc function.
Definition: definitions.h:496
MoFEMFunctionBegin
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:359
NOFIELD
@ NOFIELD
scalar or vector of scalars describe (no true field)
Definition: definitions.h:84
MoFEM::DMMoFEMSetIsPartitioned
PetscErrorCode DMMoFEMSetIsPartitioned(DM dm, PetscBool is_partitioned)
Definition: DMMoFEM.cpp:1123
MoFEM::Simple::MOFEM_EVENT_SimpleBuildProblem
PetscLogEvent MOFEM_EVENT_SimpleBuildProblem
Definition: Simple.hpp:527