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EshelbianPlasticity::SetIntegrationAtFrontFace Struct Reference
Collaboration diagram for EshelbianPlasticity::SetIntegrationAtFrontFace:
[legend]

Classes

struct  Fe
 

Public Types

using FunRule = boost::function< int(int)>
 

Public Member Functions

 SetIntegrationAtFrontFace (boost::shared_ptr< Range > front_nodes, boost::shared_ptr< Range > front_edges)
 
 SetIntegrationAtFrontFace (boost::shared_ptr< Range > front_nodes, boost::shared_ptr< Range > front_edges, FunRule fun_rule)
 
MoFEMErrorCode operator() (ForcesAndSourcesCore *fe_raw_ptr, int order_row, int order_col, int order_data)
 

Public Attributes

FunRule funRule = [](int p) { return 2 * (p + 1) + 1; }
 

Private Attributes

boost::shared_ptr< RangefrontNodes
 
boost::shared_ptr< RangefrontEdges
 

Static Private Attributes

static std::map< long int, MatrixDouble > mapRefCoords
 

Detailed Description

Definition at line 640 of file EshelbianPlasticity.cpp.

Member Typedef Documentation

◆ FunRule

Constructor & Destructor Documentation

◆ SetIntegrationAtFrontFace() [1/2]

EshelbianPlasticity::SetIntegrationAtFrontFace::SetIntegrationAtFrontFace ( boost::shared_ptr< Range front_nodes,
boost::shared_ptr< Range front_edges 
)
inline

Definition at line 645 of file EshelbianPlasticity.cpp.

647 : frontNodes(front_nodes), frontEdges(front_edges){};

◆ SetIntegrationAtFrontFace() [2/2]

EshelbianPlasticity::SetIntegrationAtFrontFace::SetIntegrationAtFrontFace ( boost::shared_ptr< Range front_nodes,
boost::shared_ptr< Range front_edges,
FunRule  fun_rule 
)
inline

Definition at line 649 of file EshelbianPlasticity.cpp.

652 : frontNodes(front_nodes), frontEdges(front_edges), funRule(fun_rule){};

Member Function Documentation

◆ operator()()

MoFEMErrorCode EshelbianPlasticity::SetIntegrationAtFrontFace::operator() ( ForcesAndSourcesCore fe_raw_ptr,
int  order_row,
int  order_col,
int  order_data 
)
inline
Examples
/home/lk58p/mofem_install/vanilla_dev_release/mofem-cephas/mofem/users_modules/eshelbian_plasticity/src/impl/EshelbianPlasticity.cpp.

Definition at line 654 of file EshelbianPlasticity.cpp.

655 {
657
658 constexpr bool debug = false;
659
660 constexpr int numNodes = 3;
661 constexpr int numEdges = 3;
662 constexpr int refinementLevels = 6;
663
664 auto &m_field = fe_raw_ptr->mField;
665 auto fe_ptr = static_cast<Fe *>(fe_raw_ptr);
666 auto fe_handle = fe_ptr->getFEEntityHandle();
667
668 auto set_base_quadrature = [&]() {
670 int rule = funRule(order_data);
671 if (rule < QUAD_2D_TABLE_SIZE) {
672 if (QUAD_2D_TABLE[rule]->dim != 2) {
673 SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY, "wrong dimension");
674 }
675 if (QUAD_2D_TABLE[rule]->order < rule) {
676 SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
677 "wrong order %d != %d", QUAD_2D_TABLE[rule]->order, rule);
678 }
679 const size_t nb_gauss_pts = QUAD_2D_TABLE[rule]->npoints;
680 fe_ptr->gaussPts.resize(3, nb_gauss_pts, false);
681 cblas_dcopy(nb_gauss_pts, &QUAD_2D_TABLE[rule]->points[1], 3,
682 &fe_ptr->gaussPts(0, 0), 1);
683 cblas_dcopy(nb_gauss_pts, &QUAD_2D_TABLE[rule]->points[2], 3,
684 &fe_ptr->gaussPts(1, 0), 1);
685 cblas_dcopy(nb_gauss_pts, QUAD_2D_TABLE[rule]->weights, 1,
686 &fe_ptr->gaussPts(2, 0), 1);
687 auto &data = fe_ptr->dataOnElement[H1];
688 data->dataOnEntities[MBVERTEX][0].getN(NOBASE).resize(nb_gauss_pts, 3,
689 false);
690 double *shape_ptr =
691 &*data->dataOnEntities[MBVERTEX][0].getN(NOBASE).data().begin();
692 cblas_dcopy(3 * nb_gauss_pts, QUAD_2D_TABLE[rule]->points, 1, shape_ptr,
693 1);
694 data->dataOnEntities[MBVERTEX][0].getDiffN(NOBASE).resize(3, 2, false);
695 std::copy(
697 data->dataOnEntities[MBVERTEX][0].getDiffN(NOBASE).data().begin());
698
699 } else {
700 SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
701 "rule > quadrature order %d < %d", rule, QUAD_3D_TABLE_SIZE);
702 }
704 };
705
706 CHKERR set_base_quadrature();
707
709
710 auto get_singular_nodes = [&]() {
711 int num_nodes;
712 const EntityHandle *conn;
713 CHKERR m_field.get_moab().get_connectivity(fe_handle, conn, num_nodes,
714 true);
715 std::bitset<numNodes> singular_nodes;
716 for (auto nn = 0; nn != numNodes; ++nn) {
717 if (frontNodes->find(conn[nn]) != frontNodes->end()) {
718 singular_nodes.set(nn);
719 } else {
720 singular_nodes.reset(nn);
721 }
722 }
723 return singular_nodes;
724 };
725
726 auto get_singular_edges = [&]() {
727 std::bitset<numEdges> singular_edges;
728 for (int ee = 0; ee != numEdges; ee++) {
729 EntityHandle edge;
730 CHKERR m_field.get_moab().side_element(fe_handle, 1, ee, edge);
731 if (frontEdges->find(edge) != frontEdges->end()) {
732 singular_edges.set(ee);
733 } else {
734 singular_edges.reset(ee);
735 }
736 }
737 return singular_edges;
738 };
739
740 auto set_gauss_pts = [&](auto &ref_gauss_pts) {
742 fe_ptr->gaussPts.swap(ref_gauss_pts);
743 const size_t nb_gauss_pts = fe_ptr->gaussPts.size2();
744 auto &data = fe_ptr->dataOnElement[H1];
745 data->dataOnEntities[MBVERTEX][0].getN(NOBASE).resize(nb_gauss_pts, 4);
746 double *shape_ptr =
747 &*data->dataOnEntities[MBVERTEX][0].getN(NOBASE).data().begin();
748 CHKERR ShapeMBTRI(shape_ptr, &fe_ptr->gaussPts(0, 0),
749 &fe_ptr->gaussPts(1, 0), nb_gauss_pts);
751 };
752
753 auto singular_nodes = get_singular_nodes();
754 if (singular_nodes.count()) {
755 auto it_map_ref_coords = mapRefCoords.find(singular_nodes.to_ulong());
756 if (it_map_ref_coords != mapRefCoords.end()) {
757 CHKERR set_gauss_pts(it_map_ref_coords->second);
759 } else {
760
761 auto refine_quadrature = [&]() {
763
764 const int max_level = refinementLevels;
765
766 moab::Core moab_ref;
767 double base_coords[] = {0, 0, 0, 1, 0, 0, 0, 1, 0};
768 EntityHandle nodes[numNodes];
769 for (int nn = 0; nn != numNodes; nn++)
770 CHKERR moab_ref.create_vertex(&base_coords[3 * nn], nodes[nn]);
771 EntityHandle tri;
772 CHKERR moab_ref.create_element(MBTRI, nodes, numNodes, tri);
773 MoFEM::CoreTmp<-1> mofem_ref_core(moab_ref, PETSC_COMM_SELF, -2);
774 MoFEM::Interface &m_field_ref = mofem_ref_core;
775 {
776 Range tris(tri, tri);
777 Range edges;
778 CHKERR m_field_ref.get_moab().get_adjacencies(
779 tris, 1, true, edges, moab::Interface::UNION);
780 CHKERR m_field_ref.getInterface<BitRefManager>()->setBitRefLevel(
781 tris, BitRefLevel().set(0), false, VERBOSE);
782 }
783
784 Range nodes_at_front;
785 for (int nn = 0; nn != numNodes; nn++) {
786 if (singular_nodes[nn]) {
787 EntityHandle ent;
788 CHKERR moab_ref.side_element(tri, 0, nn, ent);
789 nodes_at_front.insert(ent);
790 }
791 }
792
793 auto singular_edges = get_singular_edges();
794
795 EntityHandle meshset;
796 CHKERR moab_ref.create_meshset(MESHSET_SET, meshset);
797 for (int ee = 0; ee != numEdges; ee++) {
798 if (singular_edges[ee]) {
799 EntityHandle ent;
800 CHKERR moab_ref.side_element(tri, 1, ee, ent);
801 CHKERR moab_ref.add_entities(meshset, &ent, 1);
802 }
803 }
804
805 // refine mesh
806 auto *m_ref = m_field_ref.getInterface<MeshRefinement>();
807 for (int ll = 0; ll != max_level; ll++) {
808 Range edges;
809 CHKERR m_field_ref.getInterface<BitRefManager>()
810 ->getEntitiesByTypeAndRefLevel(BitRefLevel().set(ll),
811 BitRefLevel().set(), MBEDGE,
812 edges);
813 Range ref_edges;
814 CHKERR moab_ref.get_adjacencies(
815 nodes_at_front, 1, true, ref_edges, moab::Interface::UNION);
816 ref_edges = intersect(ref_edges, edges);
817 Range ents;
818 CHKERR moab_ref.get_entities_by_type(meshset, MBEDGE, ents, true);
819 ref_edges = intersect(ref_edges, ents);
820 Range tris;
821 CHKERR m_field_ref.getInterface<BitRefManager>()
822 ->getEntitiesByTypeAndRefLevel(
823 BitRefLevel().set(ll), BitRefLevel().set(), MBTRI, tris);
824 CHKERR m_ref->addVerticesInTheMiddleOfEdges(
825 ref_edges, BitRefLevel().set(ll + 1));
826 CHKERR m_ref->refineTris(tris, BitRefLevel().set(ll + 1));
827 CHKERR m_field_ref.getInterface<BitRefManager>()
828 ->updateMeshsetByEntitiesChildren(meshset,
829 BitRefLevel().set(ll + 1),
830 meshset, MBEDGE, true);
831 }
832
833 // get ref coords
834 Range tris;
835 CHKERR m_field_ref.getInterface<BitRefManager>()
836 ->getEntitiesByTypeAndRefLevel(BitRefLevel().set(max_level),
837 BitRefLevel().set(), MBTRI,
838 tris);
839
840 if (debug) {
841 CHKERR save_range(moab_ref, "ref_tris.vtk", tris);
842 SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY, "debug");
843 }
844
845 MatrixDouble ref_coords(tris.size(), 9, false);
846 int tt = 0;
847 for (Range::iterator tit = tris.begin(); tit != tris.end();
848 tit++, tt++) {
849 int num_nodes;
850 const EntityHandle *conn;
851 CHKERR moab_ref.get_connectivity(*tit, conn, num_nodes, false);
852 CHKERR moab_ref.get_coords(conn, num_nodes, &ref_coords(tt, 0));
853 }
854
855 auto &data = fe_ptr->dataOnElement[H1];
856 const size_t nb_gauss_pts = fe_ptr->gaussPts.size2();
857 MatrixDouble ref_gauss_pts(3, nb_gauss_pts * ref_coords.size1());
858 MatrixDouble &shape_n =
859 data->dataOnEntities[MBVERTEX][0].getN(NOBASE);
860 int gg = 0;
861 for (size_t tt = 0; tt != ref_coords.size1(); tt++) {
862 double *tri_coords = &ref_coords(tt, 0);
864 CHKERR Tools::getTriNormal(tri_coords, &t_normal(0));
865 auto det = t_normal.l2();
866 for (size_t ggg = 0; ggg != nb_gauss_pts; ++ggg, ++gg) {
867 for (int dd = 0; dd != 2; dd++) {
868 ref_gauss_pts(dd, gg) =
869 shape_n(ggg, 0) * tri_coords[3 * 0 + dd] +
870 shape_n(ggg, 1) * tri_coords[3 * 1 + dd] +
871 shape_n(ggg, 2) * tri_coords[3 * 2 + dd];
872 }
873 ref_gauss_pts(2, gg) = fe_ptr->gaussPts(2, ggg) * det;
874 }
875 }
876
877 mapRefCoords[singular_nodes.to_ulong()].swap(ref_gauss_pts);
878 CHKERR set_gauss_pts(mapRefCoords[singular_nodes.to_ulong()]);
879
881 };
882
883 CHKERR refine_quadrature();
884 }
885 }
886 }
887
889 }
@ VERBOSE
@ NOBASE
Definition definitions.h:59
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
@ H1
continuous field
Definition definitions.h:85
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
@ MOFEM_DATA_INCONSISTENCY
Definition definitions.h:31
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
#define CHKERR
Inline error check.
constexpr int order
static const bool debug
PetscErrorCode ShapeMBTRI(double *N, const double *X, const double *Y, const int G_DIM)
calculate shape functions on triangle
Definition fem_tools.c:182
const Tensor2_symmetric_Expr< const ddTensor0< T, Dim, i, j >, typename promote< T, double >::V, Dim, i, j > dd(const Tensor0< T * > &a, const Index< i, Dim > index1, const Index< j, Dim > index2, const Tensor1< int, Dim > &d_ijk, const Tensor1< double, Dim > &d_xyz)
Definition ddTensor0.hpp:33
std::bitset< BITREFLEVEL_SIZE > BitRefLevel
Bit structure attached to each entity identifying to what mesh entity is attached.
Definition Types.hpp:40
#define QUAD_2D_TABLE_SIZE
Definition quad.h:174
#define QUAD_3D_TABLE_SIZE
Definition quad.h:186
static QUAD *const QUAD_2D_TABLE[]
Definition quad.h:175
static PetscBool setSingularity
static std::map< long int, MatrixDouble > mapRefCoords
Managing BitRefLevels.
virtual moab::Interface & get_moab()=0
Deprecated interface functions.
Mesh refinement interface.
static constexpr std::array< double, 6 > diffShapeFunMBTRI
Definition Tools.hpp:104
static MoFEMErrorCode getTriNormal(const double *coords, double *normal, double *d_normal=nullptr)
Get the Tri Normal objectGet triangle normal.
Definition Tools.cpp:353
MoFEMErrorCode getInterface(IFACE *&iface) const
Get interface reference to pointer of interface.
int npoints
Definition quad.h:29
auto save_range

Member Data Documentation

◆ frontEdges

boost::shared_ptr<Range> EshelbianPlasticity::SetIntegrationAtFrontFace::frontEdges
private

◆ frontNodes

boost::shared_ptr<Range> EshelbianPlasticity::SetIntegrationAtFrontFace::frontNodes
private

◆ funRule

FunRule EshelbianPlasticity::SetIntegrationAtFrontFace::funRule = [](int p) { return 2 * (p + 1) + 1; }

◆ mapRefCoords

std::map<long int, MatrixDouble> EshelbianPlasticity::SetIntegrationAtFrontFace::mapRefCoords
inlinestaticprivate

The documentation for this struct was generated from the following file: