v0.15.0
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MonitorIncompressible Struct Reference
Inheritance diagram for MonitorIncompressible:
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Collaboration diagram for MonitorIncompressible:
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Public Member Functions

 MonitorIncompressible (SmartPetscObj< DM > dm, std::pair< boost::shared_ptr< PostProcEle >, boost::shared_ptr< SkinPostProcEle > > pair_post_proc_fe, std::tuple< SmartPetscObj< Vec >, SmartPetscObj< VecScatter > > ux_scatter, std::tuple< SmartPetscObj< Vec >, SmartPetscObj< VecScatter > > uy_scatter, std::tuple< SmartPetscObj< Vec >, SmartPetscObj< VecScatter > > uz_scatter, std::array< double, 3 > pass_field_eval_coords, boost::shared_ptr< SetPtsData > pass_field_eval_data, boost::shared_ptr< MatrixDouble > vec_field_ptr)
 
MoFEMErrorCode preProcess ()
 function is run at the beginning of loop
 
MoFEMErrorCode operator() ()
 function is run for every finite element
 
MoFEMErrorCode postProcess ()
 function is run at the end of loop
 
- Public Member Functions inherited from MoFEM::FEMethod
MoFEMErrorCode query_interface (boost::typeindex::type_index type_index, UnknownInterface **iface) const
 
 FEMethod ()=default
 
auto getFEName () const
 get finite element name
 
auto getDataDofsPtr () const
 
auto getDataVectorDofsPtr () const
 
const FieldEntity_vector_viewgetDataFieldEnts () const
 
boost::shared_ptr< FieldEntity_vector_view > & getDataFieldEntsPtr () const
 
auto & getRowFieldEnts () const
 
auto & getRowFieldEntsPtr () const
 
auto & getColFieldEnts () const
 
auto & getColFieldEntsPtr () const
 
auto getRowDofsPtr () const
 
auto getColDofsPtr () const
 
auto getNumberOfNodes () const
 
EntityHandle getFEEntityHandle () const
 
MoFEMErrorCode getNodeData (const std::string field_name, VectorDouble &data, const bool reset_dofs=true)
 
- Public Member Functions inherited from MoFEM::BasicMethod
 BasicMethod ()
 
virtual ~BasicMethod ()=default
 
int getNinTheLoop () const
 get number of evaluated element in the loop
 
int getLoopSize () const
 get loop size
 
auto getLoHiFERank () const
 Get lo and hi processor rank of iterated entities.
 
auto getLoFERank () const
 Get upper rank in loop for iterating elements.
 
auto getHiFERank () const
 Get upper rank in loop for iterating elements.
 
unsigned int getFieldBitNumber (std::string field_name) const
 
MoFEMErrorCode copyBasicMethod (const BasicMethod &basic)
 Copy data from other base method to this base method.
 
boost::weak_ptr< CacheTuplegetCacheWeakPtr () const
 Get the cache weak ptr object.
 
- Public Member Functions inherited from MoFEM::KspMethod
MoFEMErrorCode query_interface (boost::typeindex::type_index type_index, UnknownInterface **iface) const
 
 KspMethod ()
 
virtual ~KspMethod ()=default
 
MoFEMErrorCode copyKsp (const KspMethod &ksp)
 copy data form another method
 
- Public Member Functions inherited from MoFEM::PetscData
 PetscData ()
 
virtual ~PetscData ()=default
 
MoFEMErrorCode copyPetscData (const PetscData &petsc_data)
 
- Public Member Functions inherited from MoFEM::UnknownInterface
template<class IFACE >
MoFEMErrorCode registerInterface (bool error_if_registration_failed=true)
 Register interface.
 
template<class IFACE >
MoFEMErrorCode getInterface (IFACE *&iface) const
 Get interface reference to pointer of interface.
 
template<class IFACE >
MoFEMErrorCode getInterface (IFACE **const iface) const
 Get interface pointer to pointer of interface.
 
template<class IFACE , typename boost::enable_if< boost::is_pointer< IFACE >, int >::type = 0>
IFACE getInterface () const
 Get interface pointer to pointer of interface.
 
template<class IFACE , typename boost::enable_if< boost::is_reference< IFACE >, int >::type = 0>
IFACE getInterface () const
 Get reference to interface.
 
template<class IFACE >
IFACE * getInterface () const
 Function returning pointer to interface.
 
virtual ~UnknownInterface ()=default
 
- Public Member Functions inherited from MoFEM::SnesMethod
MoFEMErrorCode query_interface (boost::typeindex::type_index type_index, UnknownInterface **iface) const
 
 SnesMethod ()
 
virtual ~SnesMethod ()=default
 
MoFEMErrorCode copySnes (const SnesMethod &snes)
 Copy snes data.
 
- Public Member Functions inherited from MoFEM::TSMethod
MoFEMErrorCode query_interface (boost::typeindex::type_index type_index, UnknownInterface **iface) const
 
 TSMethod ()
 
virtual ~TSMethod ()=default
 
MoFEMErrorCode copyTs (const TSMethod &ts)
 Copy TS solver data.
 
- Public Member Functions inherited from MoFEM::TaoMethod
MoFEMErrorCode query_interface (boost::typeindex::type_index type_index, UnknownInterface **iface) const
 
 TaoMethod ()
 
virtual ~TaoMethod ()=default
 
MoFEMErrorCode copyTao (const TaoMethod &tao)
 Copy TAO data.
 

Private Attributes

SmartPetscObj< DM > dM
 
boost::shared_ptr< PostProcElepostProcFe
 
boost::shared_ptr< SkinPostProcEleskinPostProcFe
 
std::tuple< SmartPetscObj< Vec >, SmartPetscObj< VecScatter > > uXScatter
 
std::tuple< SmartPetscObj< Vec >, SmartPetscObj< VecScatter > > uYScatter
 
std::tuple< SmartPetscObj< Vec >, SmartPetscObj< VecScatter > > uZScatter
 
std::array< double, 3 > fieldEvalCoords
 
boost::shared_ptr< SetPtsDatafieldEvalData
 
boost::shared_ptr< MatrixDoublevecFieldPtr
 

Additional Inherited Members

- Public Types inherited from MoFEM::KspMethod
enum  KSPContext { CTX_SETFUNCTION , CTX_OPERATORS , CTX_KSPNONE }
 pass information about context of KSP/DM for with finite element is computed More...
 
- Public Types inherited from MoFEM::PetscData
enum  DataContext {
  CTX_SET_NONE = 0 , CTX_SET_F = 1 << 0 , CTX_SET_A = 1 << 1 , CTX_SET_B = 1 << 2 ,
  CTX_SET_X = 1 << 3 , CTX_SET_DX = 1 << 4 , CTX_SET_X_T = 1 << 5 , CTX_SET_X_TT = 1 << 6 ,
  CTX_SET_TIME = 1 << 7
}
 
using Switches = std::bitset<8>
 
- Public Types inherited from MoFEM::SnesMethod
enum  SNESContext { CTX_SNESSETFUNCTION , CTX_SNESSETJACOBIAN , CTX_SNESNONE }
 
- Public Types inherited from MoFEM::TSMethod
enum  TSContext {
  CTX_TSSETRHSFUNCTION , CTX_TSSETRHSJACOBIAN , CTX_TSSETIFUNCTION , CTX_TSSETIJACOBIAN ,
  CTX_TSTSMONITORSET , CTX_TSNONE
}
 
- Public Types inherited from MoFEM::TaoMethod
enum  TAOContext { CTX_TAO_OBJECTIVE , CTX_TAO_GRADIENT , CTX_TAO_HESSIAN , CTX_TAO_NONE }
 
- Static Public Member Functions inherited from MoFEM::UnknownInterface
static MoFEMErrorCode getLibVersion (Version &version)
 Get library version.
 
static MoFEMErrorCode getFileVersion (moab::Interface &moab, Version &version)
 Get database major version.
 
static MoFEMErrorCode setFileVersion (moab::Interface &moab, Version version=Version(MoFEM_VERSION_MAJOR, MoFEM_VERSION_MINOR, MoFEM_VERSION_BUILD))
 Get database major version.
 
static MoFEMErrorCode getInterfaceVersion (Version &version)
 Get database major version.
 
- Public Attributes inherited from MoFEM::FEMethod
std::string feName
 Name of finite element.
 
boost::shared_ptr< const NumeredEntFiniteElementnumeredEntFiniteElementPtr
 
boost::function< bool(FEMethod *fe_method_ptr)> exeTestHook
 Tet if element to skip element.
 
- Public Attributes inherited from MoFEM::BasicMethod
int nInTheLoop
 number currently of processed method
 
int loopSize
 local number oe methods to process
 
std::pair< int, int > loHiFERank
 Llo and hi processor rank of iterated entities.
 
int rAnk
 processor rank
 
int sIze
 number of processors in communicator
 
const RefEntity_multiIndexrefinedEntitiesPtr
 container of mofem dof entities
 
const RefElement_multiIndexrefinedFiniteElementsPtr
 container of mofem finite element entities
 
const ProblemproblemPtr
 raw pointer to problem
 
const Field_multiIndexfieldsPtr
 raw pointer to fields container
 
const FieldEntity_multiIndexentitiesPtr
 raw pointer to container of field entities
 
const DofEntity_multiIndexdofsPtr
 raw pointer container of dofs
 
const FiniteElement_multiIndexfiniteElementsPtr
 raw pointer to container finite elements
 
const EntFiniteElement_multiIndexfiniteElementsEntitiesPtr
 
const FieldEntityEntFiniteElementAdjacencyMap_multiIndexadjacenciesPtr
 
boost::function< MoFEMErrorCode()> preProcessHook
 Hook function for pre-processing.
 
boost::function< MoFEMErrorCode()> postProcessHook
 Hook function for post-processing.
 
boost::function< MoFEMErrorCode()> operatorHook
 Hook function for operator.
 
boost::movelib::unique_ptr< boolvecAssembleSwitch
 
boost::movelib::unique_ptr< boolmatAssembleSwitch
 
boost::weak_ptr< CacheTuplecacheWeakPtr
 
- Public Attributes inherited from MoFEM::KspMethod
KSPContext ksp_ctx
 Context.
 
KSP ksp
 KSP solver.
 
Vec & ksp_f
 
Mat & ksp_A
 
Mat & ksp_B
 
- Public Attributes inherited from MoFEM::PetscData
Switches data_ctx
 
Vec f
 
Mat A
 
Mat B
 
Vec x
 
Vec dx
 
Vec x_t
 
Vec x_tt
 
- Public Attributes inherited from MoFEM::SnesMethod
SNESContext snes_ctx
 
SNES snes
 snes solver
 
Vec & snes_x
 state vector
 
Vec & snes_dx
 solution update
 
Vec & snes_f
 residual
 
Mat & snes_A
 jacobian matrix
 
Mat & snes_B
 preconditioner of jacobian matrix
 
- Public Attributes inherited from MoFEM::TSMethod
TS ts
 time solver
 
TSContext ts_ctx
 
PetscInt ts_step
 time step number
 
PetscReal ts_a
 shift for U_t (see PETSc Time Solver)
 
PetscReal ts_aa
 shift for U_tt shift for U_tt
 
PetscReal ts_t
 time
 
PetscReal ts_dt
 time step size
 
Vec & ts_u
 state vector
 
Vec & ts_u_t
 time derivative of state vector
 
Vec & ts_u_tt
 second time derivative of state vector
 
Vec & ts_F
 residual vector
 
Mat & ts_A
 
Mat & ts_B
 Preconditioner for ts_A.
 
- Public Attributes inherited from MoFEM::TaoMethod
TAOContext tao_ctx
 
Tao tao
 tao solver
 
Vec & tao_x
 
Vec & tao_f
 state vector
 
Mat & tao_A
 gradient vector
 
Mat & tao_B
 hessian matrix
 
- Static Public Attributes inherited from MoFEM::PetscData
static constexpr Switches CtxSetNone = PetscData::Switches(CTX_SET_NONE)
 
static constexpr Switches CtxSetF = PetscData::Switches(CTX_SET_F)
 
static constexpr Switches CtxSetA = PetscData::Switches(CTX_SET_A)
 
static constexpr Switches CtxSetB = PetscData::Switches(CTX_SET_B)
 
static constexpr Switches CtxSetX = PetscData::Switches(CTX_SET_X)
 
static constexpr Switches CtxSetDX = PetscData::Switches(CTX_SET_DX)
 
static constexpr Switches CtxSetX_T = PetscData::Switches(CTX_SET_X_T)
 
static constexpr Switches CtxSetX_TT = PetscData::Switches(CTX_SET_X_TT)
 
static constexpr Switches CtxSetTime = PetscData::Switches(CTX_SET_TIME)
 

Detailed Description

Definition at line 33 of file incompressible_elasticity.cpp.

Constructor & Destructor Documentation

◆ MonitorIncompressible()

MonitorIncompressible::MonitorIncompressible ( SmartPetscObj< DM > dm,
std::pair< boost::shared_ptr< PostProcEle >, boost::shared_ptr< SkinPostProcEle > > pair_post_proc_fe,
std::tuple< SmartPetscObj< Vec >, SmartPetscObj< VecScatter > > ux_scatter,
std::tuple< SmartPetscObj< Vec >, SmartPetscObj< VecScatter > > uy_scatter,
std::tuple< SmartPetscObj< Vec >, SmartPetscObj< VecScatter > > uz_scatter,
std::array< double, 3 > pass_field_eval_coords,
boost::shared_ptr< SetPtsData > pass_field_eval_data,
boost::shared_ptr< MatrixDouble > vec_field_ptr )
inline

Definition at line 35 of file incompressible_elasticity.cpp.

46 : dM(dm), uXScatter(ux_scatter), uYScatter(uy_scatter),
47 uZScatter(uz_scatter), fieldEvalCoords(pass_field_eval_coords),
48 fieldEvalData(pass_field_eval_data), vecFieldPtr(vec_field_ptr) {
49 postProcFe = pair_post_proc_fe.first;
50 skinPostProcFe = pair_post_proc_fe.second;
51 };
boost::shared_ptr< MatrixDouble > vecFieldPtr
std::array< double, 3 > fieldEvalCoords
std::tuple< SmartPetscObj< Vec >, SmartPetscObj< VecScatter > > uXScatter
boost::shared_ptr< SkinPostProcEle > skinPostProcFe
std::tuple< SmartPetscObj< Vec >, SmartPetscObj< VecScatter > > uYScatter
boost::shared_ptr< SetPtsData > fieldEvalData
std::tuple< SmartPetscObj< Vec >, SmartPetscObj< VecScatter > > uZScatter
boost::shared_ptr< PostProcEle > postProcFe

Member Function Documentation

◆ operator()()

MoFEMErrorCode MonitorIncompressible::operator() ( )
inlinevirtual

function is run for every finite element

It is used to calculate element local matrices and assembly. It can be used for post-processing.

Reimplemented from MoFEM::BasicMethod.

Definition at line 54 of file incompressible_elasticity.cpp.

54{ return 0; }

◆ postProcess()

MoFEMErrorCode MonitorIncompressible::postProcess ( )
inlinevirtual

function is run at the end of loop

It is used to assembly matrices and vectors, calculating global variables, f.e. total internal energy, ect.

Iterating over dofs: Example1 iterating over dofs in row by name of the field for(IT_GET_FEROW_BY_NAME_DOFS_FOR_LOOP(this,"DISPLACEMENT",it)) { ... }

Reimplemented from MoFEM::BasicMethod.

Definition at line 56 of file incompressible_elasticity.cpp.

56 {
58
59 MoFEM::Interface *m_field_ptr;
60 CHKERR DMoFEMGetInterfacePtr(dM, &m_field_ptr);
61 auto *simple = m_field_ptr->getInterface<Simple>();
62
63 if (doEvalField) {
65 ->evalFEAtThePoint<SPACE_DIM>(
66 fieldEvalCoords.data(), 1e-12, simple->getProblemName(),
67 simple->getDomainFEName(), fieldEvalData,
68 m_field_ptr->get_comm_rank(), m_field_ptr->get_comm_rank(),
69 getCacheWeakPtr().lock(), MF_EXIST, QUIET);
70
71 if (vecFieldPtr->size1()) {
73 if constexpr (SPACE_DIM == 2)
74 MOFEM_LOG("SYNC", Sev::inform)
75 << "U_X: " << t_disp(0) << " U_Y: " << t_disp(1);
76 else
77 MOFEM_LOG("SYNC", Sev::inform)
78 << "U_X: " << t_disp(0) << " U_Y: " << t_disp(1)
79 << " U_Z: " << t_disp(2);
80 }
81 }
82 MOFEM_LOG_SEVERITY_SYNC(m_field_ptr->get_comm(), Sev::inform);
83
84 auto make_vtk = [&]() {
86 if (postProcFe) {
89 CHKERR postProcFe->writeFile("out_incomp_elasticity_" +
90 boost::lexical_cast<std::string>(ts_step) +
91 ".h5m");
92 }
93 if (skinPostProcFe) {
96 CHKERR skinPostProcFe->writeFile(
97 "out_skin_incomp_elasticity_" +
98 boost::lexical_cast<std::string>(ts_step) + ".h5m");
99 }
101 };
102
103 auto print_max_min = [&](auto &tuple, const std::string msg) {
105 CHKERR VecScatterBegin(std::get<1>(tuple), ts_u, std::get<0>(tuple),
106 INSERT_VALUES, SCATTER_FORWARD);
107 CHKERR VecScatterEnd(std::get<1>(tuple), ts_u, std::get<0>(tuple),
108 INSERT_VALUES, SCATTER_FORWARD);
109 double max, min;
110 CHKERR VecMax(std::get<0>(tuple), PETSC_NULLPTR, &max);
111 CHKERR VecMin(std::get<0>(tuple), PETSC_NULLPTR, &min);
112 MOFEM_LOG_C("INCOMP_ELASTICITY", Sev::inform,
113 "%s time %3.4e min %3.4e max %3.4e", msg.c_str(), ts_t, min,
114 max);
116 };
117
118 CHKERR make_vtk();
119 CHKERR print_max_min(uXScatter, "Ux");
120 CHKERR print_max_min(uYScatter, "Uy");
121 if constexpr (SPACE_DIM == 3)
122 CHKERR print_max_min(uZScatter, "Uz");
123
125 }
#define MOFEM_LOG_SEVERITY_SYNC(comm, severity)
Synchronise "SYNC" on curtain severity level.
#define MOFEM_LOG_C(channel, severity, format,...)
void simple(double P1[], double P2[], double P3[], double c[], const int N)
Definition acoustic.cpp:69
@ QUIET
@ MF_EXIST
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
#define CHKERR
Inline error check.
PetscErrorCode DMoFEMLoopFiniteElements(DM dm, const char fe_name[], MoFEM::FEMethod *method, CacheTupleWeakPtr cache_ptr=CacheTupleSharedPtr())
Executes FEMethod for finite elements in DM.
Definition DMMoFEM.cpp:576
PetscErrorCode DMoFEMGetInterfacePtr(DM dm, MoFEM::Interface **m_field_ptr)
Get pointer to MoFEM::Interface.
Definition DMMoFEM.cpp:410
#define MOFEM_LOG(channel, severity)
Log.
constexpr int SPACE_DIM
PetscBool doEvalField
FTensor::Tensor1< FTensor::PackPtr< T *, S >, Tensor_Dim > getFTensor1FromMat(ublas::matrix< T, L, A > &data)
Get tensor rank 1 (vector) form data matrix.
boost::weak_ptr< CacheTuple > getCacheWeakPtr() const
Get the cache weak ptr object.
virtual MPI_Comm & get_comm() const =0
virtual int get_comm_rank() const =0
Deprecated interface functions.
Field evaluator interface.
Simple interface for fast problem set-up.
Definition Simple.hpp:27
PetscReal ts_t
time
PetscInt ts_step
time step number
Vec & ts_u
state vector
MoFEMErrorCode getInterface(IFACE *&iface) const
Get interface reference to pointer of interface.

◆ preProcess()

MoFEMErrorCode MonitorIncompressible::preProcess ( )
inlinevirtual

function is run at the beginning of loop

It is used to zeroing matrices and vectors, calculation of shape functions on reference element, preprocessing boundary conditions, etc.

Reimplemented from MoFEM::BasicMethod.

Definition at line 53 of file incompressible_elasticity.cpp.

53{ return 0; }

Member Data Documentation

◆ dM

SmartPetscObj<DM> MonitorIncompressible::dM
private

Definition at line 128 of file incompressible_elasticity.cpp.

◆ fieldEvalCoords

std::array<double, 3> MonitorIncompressible::fieldEvalCoords
private

Definition at line 134 of file incompressible_elasticity.cpp.

◆ fieldEvalData

boost::shared_ptr<SetPtsData> MonitorIncompressible::fieldEvalData
private

Definition at line 135 of file incompressible_elasticity.cpp.

◆ postProcFe

boost::shared_ptr<PostProcEle> MonitorIncompressible::postProcFe
private

Definition at line 129 of file incompressible_elasticity.cpp.

◆ skinPostProcFe

boost::shared_ptr<SkinPostProcEle> MonitorIncompressible::skinPostProcFe
private

Definition at line 130 of file incompressible_elasticity.cpp.

◆ uXScatter

std::tuple<SmartPetscObj<Vec>, SmartPetscObj<VecScatter> > MonitorIncompressible::uXScatter
private

Definition at line 131 of file incompressible_elasticity.cpp.

◆ uYScatter

std::tuple<SmartPetscObj<Vec>, SmartPetscObj<VecScatter> > MonitorIncompressible::uYScatter
private

Definition at line 132 of file incompressible_elasticity.cpp.

◆ uZScatter

std::tuple<SmartPetscObj<Vec>, SmartPetscObj<VecScatter> > MonitorIncompressible::uZScatter
private

Definition at line 133 of file incompressible_elasticity.cpp.

◆ vecFieldPtr

boost::shared_ptr<MatrixDouble> MonitorIncompressible::vecFieldPtr
private

Definition at line 136 of file incompressible_elasticity.cpp.


The documentation for this struct was generated from the following file: