MoFEM::PostProcGenerateRefMesh< MBTET > Struct Reference

#include <src/post_proc/PostProcBrokenMeshInMoabBase.hpp>

Inheritance diagram for MoFEM::PostProcGenerateRefMesh< MBTET >:

Collaboration diagram for MoFEM::PostProcGenerateRefMesh< MBTET >:

Public Member Functions
MoFEMErrorCode	generateReferenceElementMesh ()
	PostProcGenerateRefMeshBase ()
Public Member Functions inherited from MoFEM::PostProcGenerateRefMeshBase
	PostProcGenerateRefMeshBase ()
virtual	~PostProcGenerateRefMeshBase ()=default
virtual MoFEMErrorCode	getOptions (std::string prefix)

Additional Inherited Members
Public Attributes inherited from MoFEM::PostProcGenerateRefMeshBase
std::vector< MatrixDouble >	levelShapeFunctions
std::vector< MatrixDouble >	levelGaussPtsOnRefMesh
std::vector< ublas::matrix< int > >	levelRef
EntityHandle	startingVertEleHandle
std::vector< double * >	verticesOnEleArrays
EntityHandle	startingEleHandle
EntityHandle *	eleConn
int	countEle
int	countVertEle
int	nbVertices
int	nbEles
PetscBool	hoNodes
int	defMaxLevel

Detailed Description

Definition at line 65 of file PostProcBrokenMeshInMoabBase.hpp.

Member Function Documentation

generateReferenceElementMesh()

MoFEMErrorCode MoFEM::PostProcGenerateRefMesh< MBTET >::generateReferenceElementMesh ( )

virtual

Implements MoFEM::PostProcGenerateRefMeshBase.

Definition at line 36 of file PostProcBrokenMeshInMoabBase.cpp.

                                                                            {
  MoFEMFunctionBegin;
 
  const int max_level = defMaxLevel;
 
  moab::Core core_ref;
  moab::Interface &moab_ref = core_ref;
 
  auto create_reference_element = [&moab_ref]() {
    MoFEMFunctionBegin;
    constexpr double base_coords[] = {0, 0, 0, 1, 0, 0, 0, 1, 0, 0, 0, 1};
    EntityHandle nodes[4];
    for (int nn = 0; nn < 4; nn++) {
      CHKERR
      moab_ref.create_vertex(&base_coords[3 * nn], nodes[nn]);
    }
    EntityHandle tet;
    CHKERR moab_ref.create_element(MBTET, nodes, 4, tet);
    MoFEMFunctionReturn(0);
  };
 
  MoFEM::CoreTmp<-1> m_core_ref(moab_ref, PETSC_COMM_SELF, -2);
  MoFEM::Interface &m_field_ref = m_core_ref;
 
  auto refine_ref_tetrahedron = [this, &m_field_ref, max_level]() {
    MoFEMFunctionBegin;
    // seed ref mofem database by setting bit ref level to reference
    // tetrahedron
    CHKERR
    m_field_ref.getInterface<BitRefManager>()->setBitRefLevelByDim(
        0, 3, BitRefLevel().set(0));
    for (int ll = 0; ll != max_level; ++ll) {
      MOFEM_TAG_AND_LOG_C("WORLD", Sev::noisy, "PostProc", "Refine Level %d",
                          ll);
      Range edges;
      CHKERR m_field_ref.getInterface<BitRefManager>()
          ->getEntitiesByTypeAndRefLevel(BitRefLevel().set(ll),
                                         BitRefLevel().set(), MBEDGE, edges);
      Range tets;
      CHKERR m_field_ref.getInterface<BitRefManager>()
          ->getEntitiesByTypeAndRefLevel(BitRefLevel().set(ll),
                                         BitRefLevel(ll).set(), MBTET, tets);
      // refine mesh
      MeshRefinement *m_ref;
      CHKERR m_field_ref.getInterface(m_ref);
      CHKERR m_ref->addVerticesInTheMiddleOfEdges(edges,
                                                  BitRefLevel().set(ll + 1));
      CHKERR m_ref->refineTets(tets, BitRefLevel().set(ll + 1));
    }
    MoFEMFunctionReturn(0);
  };
 
  auto get_ref_gauss_pts_and_shape_functions = [this, max_level, &moab_ref,
                                                &m_field_ref]() {
    MoFEMFunctionBegin;
    for (int ll = 0; ll != max_level + 1; ++ll) {
      Range tets;
      CHKERR
      m_field_ref.getInterface<BitRefManager>()->getEntitiesByTypeAndRefLevel(
          BitRefLevel().set(ll), BitRefLevel().set(ll), MBTET, tets);
      if (hoNodes) {
        EntityHandle meshset;
        CHKERR moab_ref.create_meshset(MESHSET_SET, meshset);
        CHKERR moab_ref.add_entities(meshset, tets);
        CHKERR moab_ref.convert_entities(meshset, true, false, false);
        CHKERR moab_ref.delete_entities(&meshset, 1);
      }
      Range elem_nodes;
      CHKERR moab_ref.get_connectivity(tets, elem_nodes, false);
 
      auto &gauss_pts = levelGaussPtsOnRefMesh[ll];
      gauss_pts.resize(elem_nodes.size(), 4, false);
      std::map<EntityHandle, int> little_map;
      Range::iterator nit = elem_nodes.begin();
      for (int gg = 0; nit != elem_nodes.end(); nit++, gg++) {
        CHKERR moab_ref.get_coords(&*nit, 1, &gauss_pts(gg, 0));
        little_map[*nit] = gg;
      }
      gauss_pts = trans(gauss_pts);
 
      auto &ref_tets = levelRef[ll];
      Range::iterator tit = tets.begin();
      for (int tt = 0; tit != tets.end(); ++tit, ++tt) {
        const EntityHandle *conn;
        int num_nodes;
        CHKERR moab_ref.get_connectivity(*tit, conn, num_nodes, false);
        if (tt == 0) {
          ref_tets.resize(tets.size(), num_nodes);
        }
        for (int nn = 0; nn != num_nodes; ++nn) {
          ref_tets(tt, nn) = little_map[conn[nn]];
        }
      }
 
      auto &shape_functions = levelShapeFunctions[ll];
      shape_functions.resize(elem_nodes.size(), 4);
      CHKERR ShapeMBTET(&*shape_functions.data().begin(), &gauss_pts(0, 0),
                        &gauss_pts(1, 0), &gauss_pts(2, 0), elem_nodes.size());
    }
    MoFEMFunctionReturn(0);
  };
 
  levelRef.resize(max_level + 1);
  levelGaussPtsOnRefMesh.resize(max_level + 1);
  levelShapeFunctions.resize(max_level + 1);
 
  CHKERR create_reference_element();
  CHKERR refine_ref_tetrahedron();
  CHKERR get_ref_gauss_pts_and_shape_functions();
 
  MoFEMFunctionReturn(0);
}

PostProcGenerateRefMeshBase()

MoFEM::PostProcGenerateRefMeshBase::PostProcGenerateRefMeshBase

Definition at line 13 of file PostProcBrokenMeshInMoabBase.cpp.

    : hoNodes(PETSC_TRUE), defMaxLevel(0), countEle(0), countVertEle(0),
      nbVertices(0) {}

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The documentation for this struct was generated from the following files:

• src/post_proc/PostProcBrokenMeshInMoabBase.hpp
• src/post_proc/impl/PostProcBrokenMeshInMoabBase.cpp