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Recording and reading series
Collaboration diagram for Recording and reading series:

Files

file  SeriesRecorder.hpp
 MoFEM interface.
 

Classes

struct  MoFEM::SeriesRecorder
 

Macros

#define _IT_SERIES_STEPS_BY_NAME_FOR_LOOP_(RECORDER, NAME, IT)
 loop over recorded series step More...
 

Functions

virtual MoFEMErrorCode MoFEM::SeriesRecorder::add_series_recorder (const std::string &series_name)
 
virtual MoFEMErrorCode MoFEM::SeriesRecorder::delete_recorder_series (const std::string &series_name)
 
virtual MoFEMErrorCode MoFEM::SeriesRecorder::initialize_series_recorder (const std::string &serie_name)
 
virtual MoFEMErrorCode MoFEM::SeriesRecorder::finalize_series_recorder (const std::string &serie_name)
 
virtual MoFEMErrorCode MoFEM::SeriesRecorder::record_begin (const std::string &serie_name)
 
virtual MoFEMErrorCode MoFEM::SeriesRecorder::record_problem (const std::string &serie_name, const Problem *problemPtr, RowColData rc)
 
virtual MoFEMErrorCode MoFEM::SeriesRecorder::record_problem (const std::string &serie_name, const std::string &problem_name, RowColData rc)
 
virtual MoFEMErrorCode MoFEM::SeriesRecorder::record_field (const std::string &serie_name, const std::string &field_name, const BitRefLevel &bit, const BitRefLevel &mask)
 
virtual MoFEMErrorCode MoFEM::SeriesRecorder::record_end (const std::string &serie_name, double time=0)
 
virtual MoFEMErrorCode MoFEM::SeriesRecorder::load_series_data (const std::string &serie_name, const int step_number)
 
virtual MoFEMErrorCode MoFEM::SeriesRecorder::print_series_steps ()
 
virtual bool MoFEM::SeriesRecorder::check_series (const std::string &name) const
 check if series is in database More...
 

Detailed Description

Recorder for time steps and solution sequences

Macro Definition Documentation

◆ _IT_SERIES_STEPS_BY_NAME_FOR_LOOP_

#define _IT_SERIES_STEPS_BY_NAME_FOR_LOOP_ (   RECORDER,
  NAME,
  IT 
)
Value:
SeriesStep_multiIndex::index<SeriesName_mi_tag>::type::iterator IT = \
(RECORDER)->get_series_steps_byName_begin(NAME); \
IT != (RECORDER)->get_series_steps_byName_end(NAME); \
IT++

loop over recorded series step

Parameters
NAMEseries name \parma IT iterator variable

Example:

for(_IT_SERIES_STEPS_BY_NAME_FOR_LOOP_(recorder_ptr,"TEST_SERIES1",sit)) {
ierr = mField.load_series_data("TEST_SERIES1",sit->get_step_number());
}
static PetscErrorCode ierr
#define CHKERRG(n)
Check error code of MoFEM/MOAB/PETSc function.
Definition: definitions.h:483
#define _IT_SERIES_STEPS_BY_NAME_FOR_LOOP_(RECORDER, NAME, IT)
loop over recorded series step
Examples
elasticity.cpp.

Definition at line 205 of file SeriesRecorder.hpp.

Function Documentation

◆ add_series_recorder()

MoFEMErrorCode MoFEM::SeriesRecorder::add_series_recorder ( const std::string &  series_name)
virtual

Add series recorder

Parameters
nameof series

Definition at line 90 of file SeriesRecorder.cpp.

90 {
91
92 Interface &m_field = cOre;
93 moab::Interface &moab = m_field.get_moab();
95 EntityHandle meshset;
96 CHKERR moab.create_meshset(MESHSET_SET, meshset);
97 void const *tag_data[] = {series_name.c_str()};
98 int tag_sizes[1];
99 tag_sizes[0] = series_name.size();
100 CHKERR moab.tag_set_by_ptr(th_SeriesName, &meshset, 1, tag_data, tag_sizes);
101 std::pair<Series_multiIndex::iterator, bool> p =
102 sEries.insert(FieldSeries(moab, meshset));
103 if (!p.second) {
104 SETERRQ1(PETSC_COMM_SELF, 1, "series recorder <%s> is already there",
105 series_name.c_str());
106 }
108}
static Index< 'p', 3 > p
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:346
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:416
#define CHKERR
Inline error check.
Definition: definitions.h:535
DeprecatedCoreInterface Interface
Definition: Interface.hpp:1955
moab::Interface & get_moab()
Definition: Core.hpp:324
Series_multiIndex sEries
recorded series
Tag th_SeriesName
Recorded series name.

◆ check_series()

bool MoFEM::SeriesRecorder::check_series ( const std::string &  name) const
virtual

check if series is in database

Parameters
namefield name
Returns
true if field exist
Examples
elasticity.cpp.

Definition at line 301 of file SeriesRecorder.cpp.

301 {
302 Series_multiIndex::index<SeriesName_mi_tag>::type::iterator sit =
303 sEries.get<SeriesName_mi_tag>().find(name);
304 if (sit != sEries.get<SeriesName_mi_tag>().end())
305 return true;
306 return false;
307}

◆ delete_recorder_series()

MoFEMErrorCode MoFEM::SeriesRecorder::delete_recorder_series ( const std::string &  series_name)
virtual

delete recorded series

Parameters
nameof series

Definition at line 111 of file SeriesRecorder.cpp.

111 {
112
113 Interface &m_field = cOre;
114 moab::Interface &moab = m_field.get_moab();
116 SeriesStep_multiIndex::index<SeriesName_mi_tag>::type::iterator ssit, hi_ssit;
117 ssit = seriesSteps.get<SeriesName_mi_tag>().lower_bound(series_name);
118 hi_ssit = seriesSteps.get<SeriesName_mi_tag>().upper_bound(series_name);
119 seriesSteps.get<SeriesName_mi_tag>().erase(ssit, hi_ssit);
120 Series_multiIndex::index<SeriesName_mi_tag>::type::iterator sit;
121 sit = sEries.get<SeriesName_mi_tag>().find(series_name);
122 if (sit == sEries.get<SeriesName_mi_tag>().end()) {
123 SETERRQ1(m_field.get_comm(), MOFEM_DATA_INCONSISTENCY,
124 "series recorder <%s> not exist and can be deleted",
125 series_name.c_str());
126 }
127 EntityHandle series_meshset = sit->getMeshset();
128 CHKERR moab.tag_delete(sit->th_SeriesTime);
129 CHKERR moab.tag_delete(sit->th_SeriesDataHandles);
130 CHKERR moab.tag_delete(sit->th_SeriesDataUIDs);
131 CHKERR moab.tag_delete(sit->th_SeriesData);
132 sEries.get<SeriesName_mi_tag>().erase(sit);
133 std::vector<EntityHandle> contained;
134 CHKERR moab.get_contained_meshsets(series_meshset, contained);
135 CHKERR moab.remove_entities(series_meshset, &contained[0], contained.size());
136 CHKERR moab.delete_entities(&contained[0], contained.size());
137 CHKERR moab.delete_entities(&series_meshset, 1);
139}
@ MOFEM_DATA_INCONSISTENCY
Definition: definitions.h:31
SeriesStep_multiIndex seriesSteps
recorded series steps

◆ finalize_series_recorder()

MoFEMErrorCode MoFEM::SeriesRecorder::finalize_series_recorder ( const std::string &  serie_name)
virtual

finalize series for recording, recorded data are not accessible until finalize

Parameters
seriesname

Definition at line 264 of file SeriesRecorder.cpp.

264 {
265
266 Interface &m_field = cOre;
267 moab::Interface &moab = m_field.get_moab();
269 Series_multiIndex::index<SeriesName_mi_tag>::type::iterator sit =
270 sEries.get<SeriesName_mi_tag>().find(serie_name);
271 if (sit == sEries.get<SeriesName_mi_tag>().end()) {
272 SETERRQ1(PETSC_COMM_SELF, 1, "serie recorder <%s> not exist",
273 serie_name.c_str());
274 }
275 CHKERR sit->save(moab);
276 int nb_steps;
277 CHKERR sit->get_nb_steps(moab, nb_steps);
278 int ss = 0;
279 for (; ss < nb_steps; ss++) {
280 /*std::pair<SeriesStep_multiIndex::iterator,bool> p =*/seriesSteps.insert(
281 FieldSeriesStep(moab, &*sit, ss));
282 }
284}

◆ initialize_series_recorder()

MoFEMErrorCode MoFEM::SeriesRecorder::initialize_series_recorder ( const std::string &  serie_name)
virtual

initialize sries for recording

Parameters
seriesname

Definition at line 246 of file SeriesRecorder.cpp.

246 {
247
248 Interface &m_field = cOre;
249 moab::Interface &moab = m_field.get_moab();
251 Series_multiIndex::index<SeriesName_mi_tag>::type::iterator sit =
252 sEries.get<SeriesName_mi_tag>().find(serie_name);
253 if (sit == sEries.get<SeriesName_mi_tag>().end()) {
254 SETERRQ1(PETSC_COMM_SELF, 1, "serie recorder <%s> not exist",
255 serie_name.c_str());
256 }
257 CHKERR const_cast<FieldSeries *>(&*sit)->read(moab);
258 const_cast<FieldSeries *>(&*sit)->record_begin = false;
259 const_cast<FieldSeries *>(&*sit)->record_end = false;
261}
virtual MoFEMErrorCode record_begin(const std::string &serie_name)
virtual MoFEMErrorCode record_end(const std::string &serie_name, double time=0)

◆ load_series_data()

MoFEMErrorCode MoFEM::SeriesRecorder::load_series_data ( const std::string &  serie_name,
const int  step_number 
)
virtual

load data from series into dofs database

Parameters
seriesname
stepnumber
Examples
elasticity.cpp.

Definition at line 309 of file SeriesRecorder.cpp.

310 {
311
312 Interface &m_field = cOre;
313 moab::Interface &moab = m_field.get_moab();
314 auto dofs_ptr = m_field.get_dofs();
316 SeriesStep_multiIndex::index<
317 Composite_SeriesName_And_Step_mi_tag>::type::iterator sit;
318 sit = seriesSteps.get<Composite_SeriesName_And_Step_mi_tag>().find(
319 boost::make_tuple(serie_name, step_number));
320 if (sit == seriesSteps.get<Composite_SeriesName_And_Step_mi_tag>().end()) {
321 SETERRQ2(PETSC_COMM_SELF, 1, "series <%s> and step %d not found",
322 serie_name.c_str(), step_number);
323 }
324 CHKERR sit->get(moab, *(const_cast<DofEntity_multiIndex *>(dofs_ptr)));
326}
multi_index_container< boost::shared_ptr< DofEntity >, indexed_by< ordered_unique< tag< Unique_mi_tag >, const_mem_fun< DofEntity, UId, &DofEntity::getLocalUniqueId > >, ordered_non_unique< tag< Ent_mi_tag >, const_mem_fun< DofEntity, EntityHandle, &DofEntity::getEnt > > > > DofEntity_multiIndex
MultiIndex container keeps DofEntity.

◆ print_series_steps()

MoFEMErrorCode MoFEM::SeriesRecorder::print_series_steps ( )
virtual

print series

Definition at line 286 of file SeriesRecorder.cpp.

286 {
288
289 for (auto &sit : sEries.get<SeriesName_mi_tag>())
290 MOFEM_LOG("SYNC", Sev::inform) << "series " << sit;
291
292 for (auto &ssit : seriesSteps.get<SeriesName_mi_tag>())
293 MOFEM_LOG("SYNC", Sev::inform) << "series steps " << ssit;
294
295 MOFEM_LOG_CHANNEL("WORLD");
296 MOFEM_LOG_CHANNEL("SYNC");
297 MOFEM_LOG_CHANNEL("SELF");
299}
#define SeriesRecorderFunctionBegin
#define MOFEM_LOG(channel, severity)
Log.
Definition: LogManager.hpp:301
#define MOFEM_LOG_CHANNEL(channel)
Set and reset channel.
Definition: LogManager.hpp:277

◆ record_begin()

MoFEMErrorCode MoFEM::SeriesRecorder::record_begin ( const std::string &  serie_name)
virtual

begin series recording

Parameters
seriesname

Definition at line 218 of file SeriesRecorder.cpp.

218 {
219
221 Series_multiIndex::index<SeriesName_mi_tag>::type::iterator sit =
222 sEries.get<SeriesName_mi_tag>().find(serie_name);
223 if (sit == sEries.get<SeriesName_mi_tag>().end()) {
224 SETERRQ1(PETSC_COMM_SELF, 1, "serie recorder <%s> not exist",
225 serie_name.c_str());
226 }
227 CHKERR const_cast<FieldSeries *>(&*sit)->begin();
229}

◆ record_end()

MoFEMErrorCode MoFEM::SeriesRecorder::record_end ( const std::string &  serie_name,
double  time = 0 
)
virtual

end series recording

Parameters
seriesname

Definition at line 231 of file SeriesRecorder.cpp.

232 {
233
235 Series_multiIndex::index<SeriesName_mi_tag>::type::iterator sit =
236 sEries.get<SeriesName_mi_tag>().find(serie_name);
237 if (sit == sEries.get<SeriesName_mi_tag>().end()) {
238 SETERRQ1(PETSC_COMM_SELF, 1, "serie recorder <%s> not exist",
239 serie_name.c_str());
240 }
241 CHKERR const_cast<FieldSeries *>(&*sit)->end(time);
243}

◆ record_field()

MoFEMErrorCode MoFEM::SeriesRecorder::record_field ( const std::string &  serie_name,
const std::string &  field_name,
const BitRefLevel bit,
const BitRefLevel mask 
)
virtual

record field

Parameters
fieldname
bitref level
maskfor bit ref level

Definition at line 181 of file SeriesRecorder.cpp.

184 {
185 Interface &m_field = cOre;
186 auto dofs_ptr = m_field.get_dofs();
188 Series_multiIndex::index<SeriesName_mi_tag>::type::iterator sit =
189 sEries.get<SeriesName_mi_tag>().find(serie_name);
190 if (sit == sEries.get<SeriesName_mi_tag>().end()) {
191 SETERRQ1(PETSC_COMM_SELF, MOFEM_NOT_FOUND, "serie recorder <%s> not exist",
192 serie_name.c_str());
193 }
194
195 const auto bit_number = m_field.get_field_bit_number(field_name);
196
197 auto dit = dofs_ptr->get<Unique_mi_tag>().lower_bound(
199 if (dit == dofs_ptr->get<Unique_mi_tag>().end())
200 SETERRQ1(PETSC_COMM_SELF, MOFEM_NOT_FOUND, "field <%s> not exist", field_name.c_str());
201 auto hi_dit = dofs_ptr->get<Unique_mi_tag>().upper_bound(
203
204 for (; dit != hi_dit; dit++) {
205 const BitRefLevel &dof_bit = (*dit)->getBitRefLevel();
206 if ((dof_bit & mask) != dof_bit)
207 continue;
208 if ((dof_bit & bit).any()) {
209 EntityHandle ent = (*dit)->getEnt();
210 ShortId uid = (*dit)->getNonNonuniqueShortId();
211 FieldData val = (*dit)->getFieldData();
212 CHKERR const_cast<FieldSeries *>(&*sit)->push_dofs(ent, uid, val);
213 }
214 }
216}
@ MOFEM_NOT_FOUND
Definition: definitions.h:33
auto bit
set bit
double FieldData
Field data type.
Definition: Types.hpp:25
std::bitset< BITREFLEVEL_SIZE > BitRefLevel
Bit structure attached to each entity identifying to what mesh entity is attached.
Definition: Types.hpp:40
int ShortId
Unique Id in the field.
Definition: Types.hpp:32
constexpr auto field_name
MoFEMErrorCode get_dofs(const DofEntity_multiIndex **dofs_ptr) const
Get dofs multi index.
Definition: Core.cpp:795
static UId getHiBitNumberUId(const FieldBitNumber bit_number)
static UId getLoBitNumberUId(const FieldBitNumber bit_number)

◆ record_problem() [1/2]

MoFEMErrorCode MoFEM::SeriesRecorder::record_problem ( const std::string &  serie_name,
const Problem problemPtr,
RowColData  rc 
)
virtual

record problem

Parameters
seriesname
problempointer
rccould be Row or Col

Definition at line 141 of file SeriesRecorder.cpp.

143 {
145
146 Series_multiIndex::index<SeriesName_mi_tag>::type::iterator sit =
147 sEries.get<SeriesName_mi_tag>().find(serie_name);
148 if (sit == sEries.get<SeriesName_mi_tag>().end()) {
149 SETERRQ1(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY,
150 "series recorder <%s> not exist", serie_name.c_str());
151 }
152 switch (rc) {
153 case ROW:
154 CHKERR const_cast<FieldSeries *>(&*sit)->push_dofs(
155 problemPtr->numeredRowDofsPtr->begin(),
156 problemPtr->numeredRowDofsPtr->end());
157 break;
158 case COL:
159 CHKERR const_cast<FieldSeries *>(&*sit)->push_dofs(
160 problemPtr->numeredColDofsPtr->begin(),
161 problemPtr->numeredColDofsPtr->end());
162 break;
163 default:
164 SETERRQ(PETSC_COMM_SELF, MOFEM_DATA_INCONSISTENCY, "data inconsistency");
165 }
167}
@ COL
Definition: definitions.h:123
@ ROW
Definition: definitions.h:123

◆ record_problem() [2/2]

MoFEMErrorCode MoFEM::SeriesRecorder::record_problem ( const std::string &  serie_name,
const std::string &  problem_name,
RowColData  rc 
)
virtual

record problem

Parameters
seriesname
problemname
rccould be Row or Col

Definition at line 169 of file SeriesRecorder.cpp.

171 {
172
173 Interface &m_field = cOre;
175 const Problem *problem_ptr;
176 CHKERR m_field.get_problem(problem_name, &problem_ptr);
177 CHKERR record_problem(serie_name, problem_ptr, rc);
179}
virtual MoFEMErrorCode record_problem(const std::string &serie_name, const Problem *problemPtr, RowColData rc)