14#include <adolc/adolc.h>
21 auto create_vec = [&]() {
33 return 2 * (
order - 1) + addToRule;
39 CHKERR VolumeElementForcesAndSourcesCore::preProcess();
41 if (
A != PETSC_NULLPTR) {
45 if (
F != PETSC_NULLPTR) {
65 CHKERR VecAssemblyBegin(V);
73 CHKERR VolumeElementForcesAndSourcesCore::postProcess();
85 std::vector<VectorDouble> &values_at_gauss_pts,
86 std::vector<MatrixDouble> &gardient_at_gauss_pts)
89 valuesAtGaussPts(values_at_gauss_pts),
90 gradientAtGaussPts(gardient_at_gauss_pts), zeroAtType(MBVERTEX) {}
97 const int nb_base_functions = data.
getN().size2();
101 const int nb_gauss_pts = data.
getN().size1();
102 const int rank = data.
getFieldDofs()[0]->getNbOfCoeffs();
105 if (type == zeroAtType) {
106 valuesAtGaussPts.resize(nb_gauss_pts);
107 gradientAtGaussPts.resize(nb_gauss_pts);
108 for (
int gg = 0; gg != nb_gauss_pts; gg++) {
109 valuesAtGaussPts[gg].resize(rank,
false);
110 gradientAtGaussPts[gg].resize(rank, 3,
false);
112 for (
int gg = 0; gg != nb_gauss_pts; gg++) {
113 valuesAtGaussPts[gg].clear();
114 gradientAtGaussPts[gg].clear();
125 for (
int gg = 0; gg != nb_gauss_pts; gg++) {
127 double &val = valuesAtGaussPts[gg][0];
129 &gradientAtGaussPts[gg](0, 1),
130 &gradientAtGaussPts[gg](0, 2));
132 for (; bb != nb_dofs; bb++) {
133 val += base_function * field_data;
134 grad(
i) += diff_base_functions(
i) * field_data;
135 ++diff_base_functions;
139 for (; bb != nb_base_functions; bb++) {
140 ++diff_base_functions;
145 }
else if (rank == 3) {
147 for (
int gg = 0; gg != nb_gauss_pts; gg++) {
150 &valuesAtGaussPts[gg][1],
151 &valuesAtGaussPts[gg][2]);
153 &gradientAtGaussPts[gg](0, 0), &gradientAtGaussPts[gg](0, 1),
154 &gradientAtGaussPts[gg](0, 2), &gradientAtGaussPts[gg](1, 0),
155 &gradientAtGaussPts[gg](1, 1), &gradientAtGaussPts[gg](1, 2),
156 &gradientAtGaussPts[gg](2, 0), &gradientAtGaussPts[gg](2, 1),
157 &gradientAtGaussPts[gg](2, 2));
159 for (; bb != nb_dofs / 3; bb++) {
160 values(
i) += base_function * field_data(
i);
161 gradient(
i,
j) += field_data(
i) * diff_base_functions(
j);
162 ++diff_base_functions;
166 for (; bb != nb_base_functions; bb++) {
167 ++diff_base_functions;
175 for (
int gg = 0; gg < nb_gauss_pts; gg++) {
178 for (
int dd = 0; dd < nb_dofs / rank; dd++) {
179 for (
int rr1 = 0; rr1 < rank; rr1++) {
180 valuesAtGaussPts[gg][rr1] +=
N[dd] * values[rank * dd + rr1];
181 for (
int rr2 = 0; rr2 < 3; rr2++) {
182 gradientAtGaussPts[gg](rr1, rr2) +=
183 diffN(dd, rr2) * values[rank * dd + rr1];
201 int tag,
bool jacobian,
bool ale,
205 dAta(data),
commonData(common_data),
tAg(tag), adlocReturnValue(0),
206 jAcobian(jacobian), fUnction(!jacobian), aLe(ale), fieldDisp(field_disp) {
215 CHKERR dAta.materialAdoublePtr->calculateP_PiolaKirchhoffI(
216 dAta, getNumeredEntFiniteElementPtr());
219 auto &t_P = dAta.materialAdoublePtr->t_P;
220 auto &t_invH = dAta.materialAdoublePtr->t_invH;
221 t_P(
i,
j) = t_P(
i,
k) * t_invH(
j,
k);
222 t_P(
i,
j) *= dAta.materialAdoublePtr->detH;
226 for (
int dd1 = 0; dd1 < 3; dd1++) {
227 for (
int dd2 = 0; dd2 < 3; dd2++) {
228 dAta.materialAdoublePtr->P(dd1, dd2) >>=
243 dAta.materialAdoublePtr->F.resize(3, 3,
false);
247 nbActiveVariables = 0;
248 for (
int dd1 = 0; dd1 < 3; dd1++) {
249 for (
int dd2 = 0; dd2 < 3; dd2++) {
250 dAta.materialAdoublePtr->F(dd1, dd2) <<= (*ptrh)[gg](dd1, dd2);
253 dAta.materialAdoublePtr->F(dd1, dd2) += 1;
262 nbActiveVariables = 0;
264 dAta.materialAdoublePtr->h.resize(3, 3,
false);
265 for (
int dd1 = 0; dd1 < 3; dd1++) {
266 for (
int dd2 = 0; dd2 < 3; dd2++) {
267 dAta.materialAdoublePtr->h(dd1, dd2) <<= (*ptrh)[gg](dd1, dd2);
272 dAta.materialAdoublePtr->H.resize(3, 3,
false);
273 for (
int dd1 = 0; dd1 < 3; dd1++) {
274 for (
int dd2 = 0; dd2 < 3; dd2++) {
275 dAta.materialAdoublePtr->H(dd1, dd2) <<= (*ptrH)[gg](dd1, dd2);
281 dAta.materialAdoublePtr->invH.resize(3, 3,
false);
283 dAta.materialAdoublePtr->detH,
284 dAta.materialAdoublePtr->invH);
286 auto &t_F = dAta.materialAdoublePtr->t_F;
287 auto &t_h = dAta.materialAdoublePtr->t_h;
288 auto &t_invH = dAta.materialAdoublePtr->t_invH;
290 t_F(
i,
j) = t_h(
i,
k) * t_invH(
k,
j);
294 CHKERR dAta.materialAdoublePtr->setUserActiveVariables(nbActiveVariables);
295 CHKERR calculateStress(gg);
311 r = ::function(
tAg, 9, nbActiveVariables, &activeVariables[0],
313 if (r < adlocReturnValue) {
315 "ADOL-C function evaluation with error r = %d", r);
321 double *jac_ptr[] = {
328 r = jacobian(
tAg, 9, nbActiveVariables, &activeVariables[0], jac_ptr);
329 if (r < adlocReturnValue) {
331 "ADOL-C function evaluation with error");
339 int row_side, EntityType row_type,
344 if (row_type != MBVERTEX)
347 if (dAta.tEts.find(getNumeredEntFiniteElementPtr()->getEnt()) ==
355 dAta.materialAdoublePtr->commonDataPtr = &
commonData;
356 dAta.materialAdoublePtr->opPtr =
this;
358 int nb_gauss_pts = row_data.
getN().size1();
367 for (
int gg = 0; gg != nb_gauss_pts; gg++) {
369 dAta.materialAdoublePtr->gG = gg;
372 if (recordTagForIntegrationPoint(gg)) {
377 if (jAcobian || (!recordTagForIntegrationPoint(gg))) {
378 activeVariables.resize(nbActiveVariables,
false);
380 for (
int dd1 = 0; dd1 < 3; dd1++) {
381 for (
int dd2 = 0; dd2 < 3; dd2++) {
382 activeVariables(dd1 * 3 + dd2) = (*ptrh)[gg](dd1, dd2);
386 for (
int dd1 = 0; dd1 < 3; dd1++) {
387 for (
int dd2 = 0; dd2 < 3; dd2++) {
388 activeVariables(dd1 * 3 + dd2) = (*ptrh)[gg](dd1, dd2);
391 for (
int dd1 = 0; dd1 < 3; dd1++) {
392 for (
int dd2 = 0; dd2 < 3; dd2++) {
393 activeVariables(9 + dd1 * 3 + dd2) = (*ptrH)[gg](dd1, dd2);
397 CHKERR dAta.materialAdoublePtr->setUserActiveVariables(activeVariables);
400 if (jAcobian || (!recordTagForIntegrationPoint(gg))) {
413 bool hessian,
bool ale,
bool field_disp)
416 dAta(data),
commonData(common_data),
tAg(tag), gRadient(gradient),
417 hEssian(hessian), aLe(ale), fieldDisp(field_disp) {}
422 CHKERR dAta.materialAdoublePtr->calculateElasticEnergy(
423 dAta, getNumeredEntFiniteElementPtr());
436 nbActiveVariables = 0;
437 for (
int dd1 = 0; dd1 < 3; dd1++) {
438 for (
int dd2 = 0; dd2 < 3; dd2++) {
439 dAta.materialAdoublePtr->F(dd1, dd2) <<= (*ptrh)[gg](dd1, dd2);
442 dAta.materialAdoublePtr->F(dd1, dd2) += 1;
451 nbActiveVariables = 0;
453 dAta.materialAdoublePtr->h.resize(3, 3,
false);
454 for (
int dd1 = 0; dd1 < 3; dd1++) {
455 for (
int dd2 = 0; dd2 < 3; dd2++) {
456 dAta.materialAdoublePtr->h(dd1, dd2) <<= (*ptrh)[gg](dd1, dd2);
461 dAta.materialAdoublePtr->H.resize(3, 3,
false);
462 for (
int dd1 = 0; dd1 < 3; dd1++) {
463 for (
int dd2 = 0; dd2 < 3; dd2++) {
464 dAta.materialAdoublePtr->H(dd1, dd2) <<= (*ptrH)[gg](dd1, dd2);
470 dAta.materialAdoublePtr->invH.resize(3, 3,
false);
472 dAta.materialAdoublePtr->detH,
473 dAta.materialAdoublePtr->invH);
475 auto &t_F = dAta.materialAdoublePtr->t_F;
476 auto &t_h = dAta.materialAdoublePtr->t_h;
477 auto &t_invH = dAta.materialAdoublePtr->t_invH;
479 t_F(
i,
j) = t_h(
i,
k) * t_invH(
k,
j);
483 CHKERR dAta.materialAdoublePtr->setUserActiveVariables(nbActiveVariables);
497 int r = ::gradient(
tAg, nbActiveVariables, &activeVariables[0],
503 "ADOL-C function evaluation with error");
510 double *
H[nbActiveVariables];
511 for (
int n = 0;
n != nbActiveVariables;
n++) {
514 int r = ::hessian(
tAg, nbActiveVariables, &*activeVariables.begin(),
H);
519 "ADOL-C function evaluation with error");
527 int row_side, EntityType row_type,
532 if (row_type != MBVERTEX)
535 if (dAta.tEts.find(getNumeredEntFiniteElementPtr()->getEnt()) ==
543 dAta.materialAdoublePtr->commonDataPtr = &
commonData;
544 dAta.materialAdoublePtr->opPtr =
this;
546 int nb_gauss_pts = row_data.
getN().size1();
555 for (
int gg = 0; gg != nb_gauss_pts; gg++) {
557 dAta.materialAdoublePtr->gG = gg;
560 if (recordTagForIntegrationPoint(gg)) {
564 activeVariables.resize(nbActiveVariables,
false);
566 for (
int dd1 = 0; dd1 < 3; dd1++) {
567 for (
int dd2 = 0; dd2 < 3; dd2++) {
568 activeVariables(dd1 * 3 + dd2) = (*ptrh)[gg](dd1, dd2);
572 for (
int dd1 = 0; dd1 < 3; dd1++) {
573 for (
int dd2 = 0; dd2 < 3; dd2++) {
574 activeVariables(dd1 * 3 + dd2) = (*ptrh)[gg](dd1, dd2);
577 for (
int dd1 = 0; dd1 < 3; dd1++) {
578 for (
int dd2 = 0; dd2 < 3; dd2++) {
579 activeVariables(9 + dd1 * 3 + dd2) = (*ptrH)[gg](dd1, dd2);
583 CHKERR dAta.materialAdoublePtr->setUserActiveVariables(activeVariables);
596 dAta(data),
commonData(common_data), aLe(false) {}
599 int row_side, EntityType row_type,
605 if (!dAta.forcesOnlyOnEntitiesRow.empty()) {
606 iNdices.resize(nb_dofs,
false);
608 indices_ptr = &iNdices[0];
610 VectorDofs::iterator dit = dofs.begin();
611 for (
int ii = 0; dit != dofs.end(); dit++, ii++) {
612 if (dAta.forcesOnlyOnEntitiesRow.find((*dit)->getEnt()) ==
613 dAta.forcesOnlyOnEntitiesRow.end()) {
624 int row_side, EntityType row_type,
628 if (dAta.tEts.find(getNumeredEntFiniteElementPtr()->getEnt()) ==
633 const int nb_dofs = row_data.
getIndices().size();
636 if ((
unsigned int)nb_dofs > 3 * row_data.
getN().size2()) {
637 SETERRQ(PETSC_COMM_SELF, 1,
"data inconsistency");
639 const int nb_base_functions = row_data.
getN().size2();
640 const int nb_gauss_pts = row_data.
getN().size1();
642 nf.resize(nb_dofs,
false);
649 for (
int gg = 0; gg != nb_gauss_pts; gg++) {
650 double val = getVolume() * getGaussPts()(3, gg);
653 &stress(0, 0), &stress(0, 1), &stress(0, 2), &stress(1, 0),
654 &stress(1, 1), &stress(1, 2), &stress(2, 0), &stress(2, 1),
658 for (; bb != nb_dofs / 3; bb++) {
659 rhs(
i) += val * t3(
i,
j) * diff_base_functions(
j);
661 ++diff_base_functions;
663 for (; bb != nb_base_functions; bb++) {
664 ++diff_base_functions;
668 CHKERR aSemble(row_side, row_type, row_data);
680 dAta(data),
commonData(common_data), ghostVec(ghost_vec, true),
681 fieldDisp(field_disp) {}
684 int row_side, EntityType row_type,
688 if (row_type != MBVERTEX)
690 if (dAta.tEts.find(getNumeredEntFiniteElementPtr()->getEnt()) ==
695 std::vector<MatrixDouble> &
F =
697 dAta.materialDoublePtr->F.resize(3, 3,
false);
701 for (
unsigned int gg = 0; gg != row_data.
getN().size1(); ++gg) {
702 double val = getVolume() * getGaussPts()(3, gg);
703 noalias(dAta.materialDoublePtr->F) =
F[gg];
705 for (
int dd = 0; dd < 3; dd++) {
706 dAta.materialDoublePtr->F(dd, dd) += 1;
709 int nb_active_variables = 0;
710 CHKERR dAta.materialDoublePtr->setUserActiveVariables(nb_active_variables);
711 CHKERR dAta.materialDoublePtr->calculateElasticEnergy(
712 dAta, getNumeredEntFiniteElementPtr());
713 energy += val * dAta.materialDoublePtr->eNergy;
716 CHKERR VecSetValue(ghostVec, 0, energy, ADD_VALUES);
725 dAta(data),
commonData(common_data), aLe(false) {}
738 const_cast<double *
>(&(col_data.
getDiffN(gg, nb_col / 3)(0, 0)));
742 &jac_stress(3 * 0 + 0, S + 0), &jac_stress(3 * 0 + 0, S + 1),
743 &jac_stress(3 * 0 + 0, S + 2), &jac_stress(3 * 0 + 1, S + 0),
744 &jac_stress(3 * 0 + 1, S + 1), &jac_stress(3 * 0 + 1, S + 2),
745 &jac_stress(3 * 0 + 2, S + 0), &jac_stress(3 * 0 + 2, S + 1),
746 &jac_stress(3 * 0 + 2, S + 2), &jac_stress(3 * 1 + 0, S + 0),
747 &jac_stress(3 * 1 + 0, S + 1), &jac_stress(3 * 1 + 0, S + 2),
748 &jac_stress(3 * 1 + 1, S + 0), &jac_stress(3 * 1 + 1, S + 1),
749 &jac_stress(3 * 1 + 1, S + 2), &jac_stress(3 * 1 + 2, S + 0),
750 &jac_stress(3 * 1 + 2, S + 1), &jac_stress(3 * 1 + 2, S + 2),
751 &jac_stress(3 * 2 + 0, S + 0), &jac_stress(3 * 2 + 0, S + 1),
752 &jac_stress(3 * 2 + 0, S + 2), &jac_stress(3 * 2 + 1, S + 0),
753 &jac_stress(3 * 2 + 1, S + 1), &jac_stress(3 * 2 + 1, S + 2),
754 &jac_stress(3 * 2 + 2, S + 0), &jac_stress(3 * 2 + 2, S + 1),
755 &jac_stress(3 * 2 + 2, S + 2));
757 &jac_stress(3 * 0 + 0, S + 3), &jac_stress(3 * 0 + 0, S + 4),
758 &jac_stress(3 * 0 + 0, S + 5), &jac_stress(3 * 0 + 1, S + 3),
759 &jac_stress(3 * 0 + 1, S + 4), &jac_stress(3 * 0 + 1, S + 5),
760 &jac_stress(3 * 0 + 2, S + 3), &jac_stress(3 * 0 + 2, S + 4),
761 &jac_stress(3 * 0 + 2, S + 5), &jac_stress(3 * 1 + 0, S + 3),
762 &jac_stress(3 * 1 + 0, S + 4), &jac_stress(3 * 1 + 0, S + 5),
763 &jac_stress(3 * 1 + 1, S + 3), &jac_stress(3 * 1 + 1, S + 4),
764 &jac_stress(3 * 1 + 1, S + 5), &jac_stress(3 * 1 + 2, S + 3),
765 &jac_stress(3 * 1 + 2, S + 4), &jac_stress(3 * 1 + 2, S + 5),
766 &jac_stress(3 * 2 + 0, S + 3), &jac_stress(3 * 2 + 0, S + 4),
767 &jac_stress(3 * 2 + 0, S + 5), &jac_stress(3 * 2 + 1, S + 3),
768 &jac_stress(3 * 2 + 1, S + 4), &jac_stress(3 * 2 + 1, S + 5),
769 &jac_stress(3 * 2 + 2, S + 3), &jac_stress(3 * 2 + 2, S + 4),
770 &jac_stress(3 * 2 + 2, S + 5));
772 &jac_stress(3 * 0 + 0, S + 6), &jac_stress(3 * 0 + 0, S + 7),
773 &jac_stress(3 * 0 + 0, S + 8), &jac_stress(3 * 0 + 1, S + 6),
774 &jac_stress(3 * 0 + 1, S + 7), &jac_stress(3 * 0 + 1, S + 8),
775 &jac_stress(3 * 0 + 2, S + 6), &jac_stress(3 * 0 + 2, S + 7),
776 &jac_stress(3 * 0 + 2, S + 8), &jac_stress(3 * 1 + 0, S + 6),
777 &jac_stress(3 * 1 + 0, S + 7), &jac_stress(3 * 1 + 0, S + 8),
778 &jac_stress(3 * 1 + 1, S + 6), &jac_stress(3 * 1 + 1, S + 7),
779 &jac_stress(3 * 1 + 1, S + 8), &jac_stress(3 * 1 + 2, S + 6),
780 &jac_stress(3 * 1 + 2, S + 7), &jac_stress(3 * 1 + 2, S + 8),
781 &jac_stress(3 * 2 + 0, S + 6), &jac_stress(3 * 2 + 0, S + 7),
782 &jac_stress(3 * 2 + 0, S + 8), &jac_stress(3 * 2 + 1, S + 6),
783 &jac_stress(3 * 2 + 1, S + 7), &jac_stress(3 * 2 + 1, S + 8),
784 &jac_stress(3 * 2 + 2, S + 6), &jac_stress(3 * 2 + 2, S + 7),
785 &jac_stress(3 * 2 + 2, S + 8));
789 &jac(0, 0), &jac(1, 0), &jac(2, 0), &jac(3, 0), &jac(4, 0), &jac(5, 0),
790 &jac(6, 0), &jac(7, 0), &jac(8, 0));
792 &jac(0, 1), &jac(1, 1), &jac(2, 1), &jac(3, 1), &jac(4, 1), &jac(5, 1),
793 &jac(6, 1), &jac(7, 1), &jac(8, 1));
795 &jac(0, 2), &jac(1, 2), &jac(2, 2), &jac(3, 2), &jac(4, 2), &jac(5, 2),
796 &jac(6, 2), &jac(7, 2), &jac(8, 2));
798 diff_ptr, &diff_ptr[1], &diff_ptr[2]);
799 for (
int dd = 0; dd != nb_col / 3; ++dd) {
800 t2_1_0(
i,
j) += t3_1_0(
i,
j,
k) * diff(
k);
801 t2_1_1(
i,
j) += t3_1_1(
i,
j,
k) * diff(
k);
802 t2_1_2(
i,
j) += t3_1_2(
i,
j,
k) * diff(
k);
817 int row_side,
int col_side, EntityType row_type, EntityType col_type,
825 int *row_indices_ptr = &row_data.
getIndices()[0];
826 int *col_indices_ptr = &col_data.
getIndices()[0];
828 if (!dAta.forcesOnlyOnEntitiesRow.empty()) {
829 rowIndices.resize(nb_row,
false);
831 row_indices_ptr = &rowIndices[0];
833 VectorDofs::iterator dit = dofs.begin();
834 for (
int ii = 0; dit != dofs.end(); dit++, ii++) {
835 if (dAta.forcesOnlyOnEntitiesRow.find((*dit)->getEnt()) ==
836 dAta.forcesOnlyOnEntitiesRow.end()) {
842 if (!dAta.forcesOnlyOnEntitiesCol.empty()) {
843 colIndices.resize(nb_col,
false);
845 col_indices_ptr = &colIndices[0];
847 VectorDofs::iterator dit = dofs.begin();
848 for (
int ii = 0; dit != dofs.end(); dit++, ii++) {
849 if (dAta.forcesOnlyOnEntitiesCol.find((*dit)->getEnt()) ==
850 dAta.forcesOnlyOnEntitiesCol.end()) {
857 col_indices_ptr, &
k(0, 0), ADD_VALUES);
860 if (row_side != col_side || row_type != col_type) {
865 if (!dAta.forcesOnlyOnEntitiesCol.empty()) {
866 rowIndices.resize(nb_row,
false);
868 row_indices_ptr = &rowIndices[0];
870 VectorDofs::iterator dit = dofs.begin();
871 for (
int ii = 0; dit != dofs.end(); dit++, ii++) {
872 if (dAta.forcesOnlyOnEntitiesCol.find((*dit)->getEnt()) ==
873 dAta.forcesOnlyOnEntitiesCol.end()) {
879 if (!dAta.forcesOnlyOnEntitiesRow.empty()) {
880 colIndices.resize(nb_col,
false);
882 col_indices_ptr = &colIndices[0];
884 VectorDofs::iterator dit = dofs.begin();
885 for (
int ii = 0; dit != dofs.end(); dit++, ii++) {
886 if (dAta.forcesOnlyOnEntitiesRow.find((*dit)->getEnt()) ==
887 dAta.forcesOnlyOnEntitiesRow.end()) {
893 trans_k.resize(nb_col, nb_row,
false);
894 noalias(trans_k) = trans(
k);
896 row_indices_ptr, &trans_k(0, 0), ADD_VALUES);
903 int row_side,
int col_side, EntityType row_type, EntityType col_type,
915 if (dAta.tEts.find(getNumeredEntFiniteElementPtr()->getEnt()) ==
921 const int nb_gauss_pts = row_data.
getN().size1();
927 k.resize(nb_row, nb_col,
false);
929 jac.resize(9, nb_col,
false);
931 for (
int gg = 0; gg != nb_gauss_pts; gg++) {
932 CHKERR getJac(col_data, gg);
933 double val = getVolume() * getGaussPts()(3, gg);
935 &jac(3 * 0 + 0, 0), &jac(3 * 0 + 0, 1), &jac(3 * 0 + 0, 2),
936 &jac(3 * 0 + 1, 0), &jac(3 * 0 + 1, 1), &jac(3 * 0 + 1, 2),
937 &jac(3 * 0 + 2, 0), &jac(3 * 0 + 2, 1), &jac(3 * 0 + 2, 2),
938 &jac(3 * 1 + 0, 0), &jac(3 * 1 + 0, 1), &jac(3 * 1 + 0, 2),
939 &jac(3 * 1 + 1, 0), &jac(3 * 1 + 1, 1), &jac(3 * 1 + 1, 2),
940 &jac(3 * 1 + 2, 0), &jac(3 * 1 + 2, 1), &jac(3 * 1 + 2, 2),
941 &jac(3 * 2 + 0, 0), &jac(3 * 2 + 0, 1), &jac(3 * 2 + 0, 2),
942 &jac(3 * 2 + 1, 0), &jac(3 * 2 + 1, 1), &jac(3 * 2 + 1, 2),
943 &jac(3 * 2 + 2, 0), &jac(3 * 2 + 2, 1), &jac(3 * 2 + 2, 2));
944 for (
int cc = 0; cc != nb_col / 3; cc++) {
947 &
k(0, 3 * cc + 0), &
k(0, 3 * cc + 1), &
k(0, 3 * cc + 2),
948 &
k(1, 3 * cc + 0), &
k(1, 3 * cc + 1), &
k(1, 3 * cc + 2),
949 &
k(2, 3 * cc + 0), &
k(2, 3 * cc + 1), &
k(2, 3 * cc + 2), 3 * nb_col);
950 for (
int rr = 0; rr != nb_row / 3; rr++) {
951 lhs(
i,
j) += val * t3_1(
i,
m,
j) * diff_base_functions(
m);
952 ++diff_base_functions;
959 CHKERR aSemble(row_side, col_side, row_type, col_type, row_data, col_data);
977 int row_side,
int col_side, EntityType row_type, EntityType col_type,
985 int *row_indices_ptr = &row_data.
getIndices()[0];
986 if (!dAta.forcesOnlyOnEntitiesRow.empty()) {
987 rowIndices.resize(nb_row,
false);
989 row_indices_ptr = &rowIndices[0];
991 VectorDofs::iterator dit = dofs.begin();
992 for (
int ii = 0; dit != dofs.end(); dit++, ii++) {
993 if (dAta.forcesOnlyOnEntitiesRow.find((*dit)->getEnt()) ==
994 dAta.forcesOnlyOnEntitiesRow.end()) {
1000 int *col_indices_ptr = &col_data.
getIndices()[0];
1001 if (!dAta.forcesOnlyOnEntitiesCol.empty()) {
1002 colIndices.resize(nb_col,
false);
1004 col_indices_ptr = &colIndices[0];
1006 VectorDofs::iterator dit = dofs.begin();
1007 for (
int ii = 0; dit != dofs.end(); dit++, ii++) {
1008 if (dAta.forcesOnlyOnEntitiesCol.find((*dit)->getEnt()) ==
1009 dAta.forcesOnlyOnEntitiesCol.end()) {
1010 colIndices[ii] = -1;
1024 col_indices_ptr, &
k(0, 0), ADD_VALUES);
1031 int tag,
bool jacobian,
bool ale)
1033 jacobian, ale, false) {}
1040 CHKERR dAta.materialAdoublePtr->calculatesIGma_EshelbyStress(
1041 dAta, getNumeredEntFiniteElementPtr());
1043 auto &t_sIGma = dAta.materialAdoublePtr->t_sIGma;
1044 auto &t_invH = dAta.materialAdoublePtr->t_invH;
1045 t_sIGma(
i,
j) = t_sIGma(
i,
k) * t_invH(
j,
k);
1046 t_sIGma(
i,
j) *= dAta.materialAdoublePtr->detH;
1050 for (
int dd1 = 0; dd1 < 3; dd1++) {
1051 for (
int dd2 = 0; dd2 < 3; dd2++) {
1052 dAta.materialAdoublePtr->sIGma(dd1, dd2) >>=
1088 materialAdoublePtr) {
1091 if (!materialDoublePtr) {
1093 "Pointer for materialDoublePtr not allocated");
1095 if (!materialAdoublePtr) {
1097 "Pointer for materialAdoublePtr not allocated");
1103 CHKERR it->getAttributeDataStructure(mydata);
1104 int id = it->getMeshsetId();
1111 setOfBlocks[id].materialDoublePtr = materialDoublePtr;
1112 setOfBlocks[id].materialAdoublePtr = materialAdoublePtr;
1119 const std::string element_name,
1120 const std::string spatial_position_field_name,
1121 const std::string material_position_field_name,
const bool ale) {
1126 element_name, spatial_position_field_name);
1128 element_name, spatial_position_field_name);
1130 element_name, spatial_position_field_name);
1134 element_name, material_position_field_name);
1136 element_name, material_position_field_name);
1139 element_name, material_position_field_name);
1142 std::map<int, BlockData>::iterator sit =
setOfBlocks.begin();
1152 const std::string spatial_position_field_name,
1153 const std::string material_position_field_name,
const bool ale,
1154 const bool field_disp) {
1167 std::map<int, BlockData>::iterator sit =
setOfBlocks.begin();
1170 spatial_position_field_name, sit->second,
commonData,
tAg,
false, ale,
1173 spatial_position_field_name, sit->second,
commonData));
1200 spatial_position_field_name, sit->second,
commonData,
tAg,
true, ale,
1203 spatial_position_field_name, spatial_position_field_name, sit->second,
static MoFEMErrorCode calculateEnergy(DM dm, boost::shared_ptr< map< int, BlockData > > block_sets_ptr, const std::string x_field, const std::string X_field, const bool ale, const bool field_disp, SmartPetscObj< Vec > &v_energy_ptr)
static MoFEMErrorCode get_jac(EntitiesFieldData::EntData &col_data, int gg, MatrixDouble &jac_stress, MatrixDouble &jac)
Operators and data structures for non-linear elastic analysis.
#define MoFEMFunctionReturnHot(a)
Last executable line of each PETSc function used for error handling. Replaces return()
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
@ MAT_ELASTICSET
block name is "MAT_ELASTIC"
@ MOFEM_OPERATION_UNSUCCESSFUL
@ MOFEM_DATA_INCONSISTENCY
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
#define CHKERR
Inline error check.
#define MoFEMFunctionBeginHot
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
virtual MoFEMErrorCode add_finite_element(const std::string &fe_name, enum MoFEMTypes bh=MF_EXCL, int verb=DEFAULT_VERBOSITY)=0
add finite element
virtual MoFEMErrorCode modify_finite_element_add_field_col(const std::string &fe_name, const std::string name_row)=0
set field col which finite element use
virtual MoFEMErrorCode add_ents_to_finite_element_by_type(const EntityHandle entities, const EntityType type, const std::string name, const bool recursive=true)=0
add entities to finite element
virtual MoFEMErrorCode modify_finite_element_add_field_row(const std::string &fe_name, const std::string name_row)=0
set field row which finite element use
virtual MoFEMErrorCode modify_finite_element_add_field_data(const std::string &fe_name, const std::string name_field)=0
set finite element field data
virtual bool check_field(const std::string &name) const =0
check if field is in database
#define _IT_CUBITMESHSETS_BY_BCDATA_TYPE_FOR_LOOP_(MESHSET_MANAGER, CUBITBCTYPE, IT)
Iterator that loops over a specific Cubit MeshSet in a moFEM field.
const double n
refractive index of diffusive medium
PetscErrorCode MoFEMErrorCode
MoFEM/PETSc error code.
VectorShallowArrayAdaptor< double > VectorAdaptor
MatrixShallowArrayAdaptor< double > MatrixAdaptor
Matrix adaptor.
implementation of Data Operators for Forces and Sources
MoFEMErrorCode invertTensor3by3(ublas::matrix< T, L, A > &jac_data, ublas::vector< T, A > &det_data, ublas::matrix< T, L, A > &inv_jac_data)
Calculate inverse of tensor rank 2 at integration points.
auto createVectorMPI(MPI_Comm comm, PetscInt n, PetscInt N)
Create MPI Vector.
MoFEMErrorCode MatSetValues(Mat M, const EntitiesFieldData::EntData &row_data, const EntitiesFieldData::EntData &col_data, const double *ptr, InsertMode iora)
Assemble PETSc matrix.
static auto determinantTensor3by3(T &t)
Calculate the determinant of a 3x3 matrix or a tensor of rank 2.
MoFEMErrorCode VecSetValues(Vec V, const EntitiesFieldData::EntData &data, const double *ptr, InsertMode iora)
Assemble PETSc vector.
ublas::vector< FEDofEntity *, DofsAllocator > VectorDofs
constexpr auto field_name
FTensor::Index< 'm', 3 > m
virtual moab::Interface & get_moab()=0
virtual MPI_Comm & get_comm() const =0
virtual int get_comm_rank() const =0
bool sYmm
If true assume that matrix is symmetric structure.
Deprecated interface functions.
Data on single entity (This is passed as argument to DataOperator::doWork)
FTensor::Tensor1< FTensor::PackPtr< double *, Tensor_Dim >, Tensor_Dim > getFTensor1DiffN(const FieldApproximationBase base)
Get derivatives of base functions.
FTensor::Tensor0< FTensor::PackPtr< double *, 1 > > getFTensor0N(const FieldApproximationBase base)
Get base function as Tensor0.
MatrixDouble & getDiffN(const FieldApproximationBase base)
get derivatives of base functions
MatrixDouble & getN(const FieldApproximationBase base)
get base functions this return matrix (nb. of rows is equal to nb. of Gauss pts, nb....
const VectorDouble & getFieldData() const
Get DOF values on entity.
FTensor::Tensor1< FTensor::PackPtr< double *, Tensor_Dim >, Tensor_Dim > getFTensor1FieldData()
Return FTensor of rank 1, i.e. vector from field data coefficients.
FTensor::Tensor0< FTensor::PackPtr< double *, 1 > > getFTensor0FieldData()
Return scalar files as a FTensor of rank 0.
const VectorDofs & getFieldDofs() const
Get DOF data structures (const version)
const VectorInt & getIndices() const
Get global indices of degrees of freedom on entity.
boost::ptr_deque< UserDataOperator > & getOpPtrVector()
Use to push back operator for row operator.
Elastic material data structure.
intrusive_ptr for managing petsc objects
FTensor::Tensor2< double *, 3, 3 > & getJac()
get element Jacobian
Volume finite element base.
data for calculation heat conductivity and heat capacity elements
common data used by volume elements
std::vector< VectorDouble > jacEnergy
std::vector< MatrixDouble > jacStress
this is simply material tangent operator
std::vector< double > eNergy
std::vector< VectorDouble > hessianEnergy
std::vector< MatrixDouble3by3 > sTress
std::map< std::string, std::vector< MatrixDouble > > gradAtGaussPts
Implementation of elastic (non-linear) St. Kirchhoff equation.
MoFEMErrorCode preProcess()
Pre-processing function executed at loop initialization.
MoFEMErrorCode postProcess()
Post-processing function executed at loop completion.
MyVolumeFE(MoFEM::Interface &m_field)
int getRule(int order)
it is used to calculate nb. of Gauss integration points
OpEnergy(const std::string field_name, BlockData &data, CommonData &common_data, SmartPetscObj< Vec > ghost_vec, bool field_disp)
MoFEMErrorCode doWork(int row_side, EntityType row_type, EntitiesFieldData::EntData &row_data)
OpGetCommonDataAtGaussPts(const std::string field_name, CommonData &common_data)
MoFEMErrorCode doWork(int side, EntityType type, EntitiesFieldData::EntData &data)
operator calculating deformation gradient
OpGetDataAtGaussPts(const std::string field_name, std::vector< VectorDouble > &values_at_gauss_pts, std::vector< MatrixDouble > &gradient_at_gauss_pts)
virtual MoFEMErrorCode playTag(const int gg)
Play ADOL-C tape.
OpJacobianEnergy(const std::string field_name, BlockData &data, CommonData &common_data, int tag, bool gradient, bool hessian, bool ale, bool field_disp)
virtual MoFEMErrorCode recordTag(const int gg)
Record ADOL-C tape.
MoFEMErrorCode doWork(int row_side, EntityType row_type, EntitiesFieldData::EntData &row_data)
virtual MoFEMErrorCode calculateEnergy(const int gg)
Calculate Paola-Kirchhoff I stress.
MoFEMErrorCode calculateStress(const int gg)
Calculate Paola-Kirchhoff I stress.
OpJacobianEshelbyStress(const std::string field_name, BlockData &data, CommonData &common_data, int tag, bool jacobian, bool ale)
Operator performs automatic differentiation.
virtual MoFEMErrorCode recordTag(const int gg)
Record ADOL-C tape.
virtual MoFEMErrorCode playTag(const int gg)
Play ADOL-C tape.
OpJacobianPiolaKirchhoffStress(const std::string field_name, BlockData &data, CommonData &common_data, int tag, bool jacobian, bool ale, bool field_disp)
Construct operator to calculate Piola-Kirchhoff stress or its derivatives over gradient deformation.
MoFEMErrorCode doWork(int row_side, EntityType row_type, EntitiesFieldData::EntData &row_data)
Calculate stress or jacobian at gauss points.
virtual MoFEMErrorCode calculateStress(const int gg)
Calculate Paola-Kirchhoff I stress.
OpLhsEshelby_dX(const std::string vel_field, const std::string field_name, BlockData &data, CommonData &common_data)
OpLhsEshelby_dx(const std::string vel_field, const std::string field_name, BlockData &data, CommonData &common_data)
OpLhsPiolaKirchhoff_dX(const std::string vel_field, const std::string field_name, BlockData &data, CommonData &common_data)
MoFEMErrorCode aSemble(int row_side, int col_side, EntityType row_type, EntityType col_type, EntitiesFieldData::EntData &row_data, EntitiesFieldData::EntData &col_data)
MoFEMErrorCode doWork(int row_side, int col_side, EntityType row_type, EntityType col_type, EntitiesFieldData::EntData &row_data, EntitiesFieldData::EntData &col_data)
virtual MoFEMErrorCode aSemble(int row_side, int col_side, EntityType row_type, EntityType col_type, EntitiesFieldData::EntData &row_data, EntitiesFieldData::EntData &col_data)
OpLhsPiolaKirchhoff_dx(const std::string vel_field, const std::string field_name, BlockData &data, CommonData &common_data)
OpRhsEshelbyStress(const std::string field_name, BlockData &data, CommonData &common_data)
virtual MoFEMErrorCode aSemble(int row_side, EntityType row_type, EntitiesFieldData::EntData &row_data)
MoFEMErrorCode doWork(int row_side, EntityType row_type, EntitiesFieldData::EntData &row_data)
OpRhsPiolaKirchhoff(const std::string field_name, BlockData &data, CommonData &common_data)
MyVolumeFE feRhs
calculate right hand side for tetrahedral elements
NonlinearElasticElement(MoFEM::Interface &m_field, short int tag)
MoFEMErrorCode addElement(const std::string element_name, const std::string spatial_position_field_name, const std::string material_position_field_name="MESH_NODE_POSITIONS", const bool ale=false)
std::map< int, BlockData > setOfBlocks
maps block set id with appropriate BlockData
FTensor::Index< 'k', 3 > k
FTensor::Index< 'j', 3 > j
MoFEM::Interface & mField
MoFEMErrorCode setBlocks(boost::shared_ptr< FunctionsToCalculatePiolaKirchhoffI< double > > materialDoublePtr, boost::shared_ptr< FunctionsToCalculatePiolaKirchhoffI< adouble > > materialAdoublePtr)
MyVolumeFE feEnergy
calculate elastic energy
FTensor::Index< 'i', 3 > i
MoFEMErrorCode setOperators(const std::string spatial_position_field_name, const std::string material_position_field_name="MESH_NODE_POSITIONS", const bool ale=false, const bool field_disp=false)
Set operators to calculate left hand tangent matrix and right hand residual.