v0.13.1
Problems

Adding and managing problems. More...

Collaboration diagram for Problems:

Make elemnts multishared

MoFEMErrorCode MoFEM::CommInterface::resolveSharedFiniteElements (const Problem *problem_ptr, const std::string &fe_name, int verb=DEFAULT_VERBOSITY)
 resolve shared entities for finite elements in the problem More...
 
MoFEMErrorCode MoFEM::CommInterface::resolveSharedFiniteElements (const std::string &name, const std::string &fe_name, int verb=DEFAULT_VERBOSITY)
 resolve shared entities for finite elements in the problem More...
 

Problems

virtual MoFEMErrorCode MoFEM::CoreInterface::add_problem (const std::string &name, enum MoFEMTypes bh=MF_EXCL, int verb=DEFAULT_VERBOSITY)=0
 Add problem. More...
 
virtual MoFEMErrorCode MoFEM::CoreInterface::delete_problem (const std::string name)=0
 Delete problem. More...
 
virtual MoFEMErrorCode MoFEM::CoreInterface::modify_problem_add_finite_element (const std::string &name_problem, const std::string &fe_name)=0
 add finite element to problem, this add entities assigned to finite element to a particular problem More...
 
virtual MoFEMErrorCode MoFEM::CoreInterface::modify_problem_unset_finite_element (const std::string &name_problem, const std::string &fe_name)=0
 unset finite element from problem, this remove entities assigned to finite element to a particular problem More...
 
virtual MoFEMErrorCode MoFEM::CoreInterface::modify_problem_ref_level_add_bit (const std::string &name_problem, const BitRefLevel &bit)=0
 add ref level to problem More...
 
virtual MoFEMErrorCode MoFEM::CoreInterface::modify_problem_mask_ref_level_add_bit (const std::string &name_problem, const BitRefLevel &bit)=0
 set dof mask ref level for problem More...
 
virtual MoFEMErrorCode MoFEM::CoreInterface::modify_problem_ref_level_set_bit (const std::string &name_problem, const BitRefLevel &bit)=0
 set ref level for problem More...
 
virtual MoFEMErrorCode MoFEM::CoreInterface::modify_problem_mask_ref_level_set_bit (const std::string &name_problem, const BitRefLevel &bit)=0
 set dof mask ref level for problem More...
 
virtual MoFEMErrorCode MoFEM::CoreInterface::list_problem () const =0
 list problems More...
 
virtual MoFEMErrorCode MoFEM::CoreInterface::clear_problem (const std::string name, int verb=DEFAULT_VERBOSITY)=0
 clear problem More...
 
virtual MoFEMErrorCode MoFEM::CoreInterface::clear_problems (int verb=DEFAULT_VERBOSITY)=0
 clear problems More...
 
virtual MoFEMErrorCode MoFEM::CoreInterface::get_problem_finite_elements_entities (const std::string &name, const std::string &fe_name, const EntityHandle meshset)=0
 add finite elements to the meshset More...
 
virtual bool MoFEM::CoreInterface::check_problem (const std::string name)=0
 check if problem exist More...
 

Detailed Description

Adding and managing problems.

Function Documentation

◆ add_problem()

virtual MoFEMErrorCode MoFEM::CoreInterface::add_problem ( const std::string &  name,
enum MoFEMTypes  bh = MF_EXCL,
int  verb = DEFAULT_VERBOSITY 
)
pure virtual

◆ check_problem()

virtual bool MoFEM::CoreInterface::check_problem ( const std::string  name)
pure virtual

check if problem exist

Parameters
nameproblem name
Returns
true if problem is in database

Implemented in MoFEM::CoreTmp< 0 >.

◆ clear_problem()

virtual MoFEMErrorCode MoFEM::CoreInterface::clear_problem ( const std::string  name,
int  verb = DEFAULT_VERBOSITY 
)
pure virtual

clear problem

Implemented in MoFEM::CoreTmp< 0 >.

◆ clear_problems()

virtual MoFEMErrorCode MoFEM::CoreInterface::clear_problems ( int  verb = DEFAULT_VERBOSITY)
pure virtual

clear problems

Implemented in MoFEM::CoreTmp< 0 >.

◆ delete_problem()

virtual MoFEMErrorCode MoFEM::CoreInterface::delete_problem ( const std::string  name)
pure virtual

Delete problem.

Note
add_file is a collective, should be executed on all processors. Otherwise could lead to deadlock.

Implemented in MoFEM::CoreTmp< 0 >.

◆ get_problem_finite_elements_entities()

virtual MoFEMErrorCode MoFEM::CoreInterface::get_problem_finite_elements_entities ( const std::string &  name,
const std::string &  fe_name,
const EntityHandle  meshset 
)
pure virtual

add finite elements to the meshset

Parameters
nameis problem name
fe_name
meshset

Implemented in MoFEM::CoreTmp< 0 >.

◆ list_problem()

virtual MoFEMErrorCode MoFEM::CoreInterface::list_problem ( ) const
pure virtual

list problems

Implemented in MoFEM::CoreTmp< 0 >.

◆ modify_problem_add_finite_element()

virtual MoFEMErrorCode MoFEM::CoreInterface::modify_problem_add_finite_element ( const std::string &  name_problem,
const std::string &  fe_name 
)
pure virtual

◆ modify_problem_mask_ref_level_add_bit()

virtual MoFEMErrorCode MoFEM::CoreInterface::modify_problem_mask_ref_level_add_bit ( const std::string &  name_problem,
const BitRefLevel bit 
)
pure virtual

set dof mask ref level for problem

Implemented in MoFEM::CoreTmp< 0 >.

◆ modify_problem_mask_ref_level_set_bit()

virtual MoFEMErrorCode MoFEM::CoreInterface::modify_problem_mask_ref_level_set_bit ( const std::string &  name_problem,
const BitRefLevel bit 
)
pure virtual

set dof mask ref level for problem

Note
add_file is a collective, should be executed on all processors. Otherwise could lead to deadlock.

Implemented in MoFEM::CoreTmp< 0 >.

◆ modify_problem_ref_level_add_bit()

virtual MoFEMErrorCode MoFEM::CoreInterface::modify_problem_ref_level_add_bit ( const std::string &  name_problem,
const BitRefLevel bit 
)
pure virtual

add ref level to problem

Note
add_file is a collective, should be executed on all processors. Otherwise could lead to deadlock.

if same finite element is solved using different level of refinements, than the level of refinement has to be specificied to problem in query

Parameters
nameProblem name
BitRefLevelbitLevel Example:
mField.modify_problem_add_finite_element("BEAM_BENDING_ON_MESH_REF1","ELASTIC");
mField.modify_problem_add_finite_element("BEAM_BENDING_ON_MESH_REF2","ELASTIC");
mField.modify_problem_ref_level_add_bit("BEAM_BENDING_ON_MESH_REF1",bit_level1);
mField.modify_problem_ref_level_add_bit("BEAM_BENDING_ON_MESH_REF2",bit_level2);
#define CHKERR
Inline error check.
Definition: definitions.h:548
Two Problems exist and solved independently, both are elastic, but solved using different mesh refinement

Implemented in MoFEM::CoreTmp< 0 >.

Examples
build_large_problem.cpp, build_problems.cpp, continuity_check_on_contact_prism_side_ele.cpp, continuity_check_on_skeleton_3d.cpp, forces_and_sources_testing_edge_element.cpp, forces_and_sources_testing_flat_prism_element.cpp, forces_and_sources_testing_users_base.cpp, hcurl_divergence_operator_2d.cpp, mesh_insert_interface_atom.cpp, mortar_contact.cpp, mortar_contact_thermal.cpp, nonlinear_dynamics.cpp, prism_elements_from_surface.cpp, prism_polynomial_approximation.cpp, quad_polynomial_approximation.cpp, remove_entities_from_problem.cpp, remove_entities_from_problem_not_partitioned.cpp, simple_contact.cpp, simple_contact_thermal.cpp, and test_jacobian_of_simple_contact_element.cpp.

◆ modify_problem_ref_level_set_bit()

virtual MoFEMErrorCode MoFEM::CoreInterface::modify_problem_ref_level_set_bit ( const std::string &  name_problem,
const BitRefLevel bit 
)
pure virtual

set ref level for problem

Note
add_file is a collective, should be executed on all processors. Otherwise could lead to deadlock.

if same finite element is solved using different level of refinements, than the level of refinement has to be specificied to problem in query

Parameters
nameProblem name
BitRefLevelbitLevel Example:
mField.modify_problem_add_finite_element("BEAM_BENDING_ON_MESH_REF1","ELASTIC");
mField.modify_problem_add_finite_element("BEAM_BENDING_ON_MESH_REF2","ELASTIC");
mField.modify_problem_ref_level_set_bit("BEAM_BENDING_ON_MESH_REF1",bit_level1);
mField.modify_problem_ref_level_set_bit("BEAM_BENDING_ON_MESH_REF2",bit_level2);
Two Problems exist and solved independently, both are elastic, but solved using different mesh refinement

Implemented in MoFEM::CoreTmp< 0 >.

◆ modify_problem_unset_finite_element()

virtual MoFEMErrorCode MoFEM::CoreInterface::modify_problem_unset_finite_element ( const std::string &  name_problem,
const std::string &  fe_name 
)
pure virtual

unset finite element from problem, this remove entities assigned to finite element to a particular problem

Note: If problem is build, it need to be cleaned to make this effective

Note
add_file is a collective, should be executed on all processors. Otherwise could lead to deadlock.
Parameters
nameProblem name
nameFinite Element name

Implemented in MoFEM::CoreTmp< 0 >.

◆ resolveSharedFiniteElements() [1/2]

MoFEMErrorCode MoFEM::CommInterface::resolveSharedFiniteElements ( const Problem problem_ptr,
const std::string &  fe_name,
int  verb = DEFAULT_VERBOSITY 
)

resolve shared entities for finite elements in the problem

Parameters
problem_ptrproblem pointer
fe_namefinite element name
verbverbosity level
Returns
error code

This allows for tag reduction or tag exchange, f.e.

CHKERR m_field.resolveSharedFiniteElements(problem_ptr,"SHELL_ELEMENT");
Tag th;
CHKERR mField.get_moab().tag_get_handle("ADAPT_ORDER",th);
CHKERR ParallelComm* pcomm =
ParallelComm::get_pcomm(&mField.get_moab(),MYPCOMM_INDEX);
CHKERR pcomm->exchange_tags(th,prisms);
#define MYPCOMM_INDEX
default communicator number PCOMM
Definition: definitions.h:228

Definition at line 230 of file CommInterface.cpp.

231 {
232 MoFEM::Interface &m_field = cOre;
234 ParallelComm *pcomm = ParallelComm::get_pcomm(
235 &m_field.get_moab(), m_field.get_basic_entity_data_ptr()->pcommID);
236 std::vector<int> shprocs(MAX_SHARING_PROCS, 0);
237 std::vector<EntityHandle> shhandles(MAX_SHARING_PROCS, 0);
238 Range ents;
239 Tag th_gid = m_field.get_moab().globalId_tag();
240 PetscLayout layout;
241 CHKERR problem_ptr->getNumberOfElementsByNameAndPart(m_field.get_comm(),
242 fe_name, &layout);
243 int gid, last_gid;
244 CHKERR PetscLayoutGetRange(layout, &gid, &last_gid);
245 CHKERR PetscLayoutDestroy(&layout);
246 for (_IT_NUMEREDFE_BY_NAME_FOR_LOOP_(problem_ptr, fe_name, fe_it)) {
247 EntityHandle ent = (*fe_it)->getEnt();
248 ents.insert(ent);
249 unsigned int part = (*fe_it)->getPart();
250 CHKERR m_field.get_moab().tag_set_data(pcomm->part_tag(), &ent, 1, &part);
251 if (part == pcomm->rank()) {
252 CHKERR m_field.get_moab().tag_set_data(th_gid, &ent, 1, &gid);
253 gid++;
254 }
255 shprocs.clear();
256 shhandles.clear();
257
258 if (pcomm->size() > 1) {
259
260 unsigned char pstatus = 0;
261 if (pcomm->rank() != part) {
262 pstatus = PSTATUS_NOT_OWNED;
263 pstatus |= PSTATUS_GHOST;
264 }
265
266 if (pcomm->size() > 2) {
267 pstatus |= PSTATUS_SHARED;
268 pstatus |= PSTATUS_MULTISHARED;
269 } else {
270 pstatus |= PSTATUS_SHARED;
271 }
272
273 size_t rrr = 0;
274 for (size_t rr = 0; rr < pcomm->size(); ++rr) {
275 if (rr != pcomm->rank()) {
276 shhandles[rrr] = ent;
277 shprocs[rrr] = rr;
278 ++rrr;
279 }
280 }
281 for (; rrr != pcomm->size(); ++rrr)
282 shprocs[rrr] = -1;
283
284 if (pstatus & PSTATUS_SHARED) {
285 CHKERR m_field.get_moab().tag_set_data(pcomm->sharedp_tag(), &ent, 1,
286 &shprocs[0]);
287 CHKERR m_field.get_moab().tag_set_data(pcomm->sharedh_tag(), &ent, 1,
288 &shhandles[0]);
289 }
290
291 if (pstatus & PSTATUS_MULTISHARED) {
292 CHKERR m_field.get_moab().tag_set_data(pcomm->sharedps_tag(), &ent, 1,
293 &shprocs[0]);
294 CHKERR m_field.get_moab().tag_set_data(pcomm->sharedhs_tag(), &ent, 1,
295 &shhandles[0]);
296 }
297 CHKERR m_field.get_moab().tag_set_data(pcomm->pstatus_tag(), &ent, 1,
298 &pstatus);
299 }
300 }
301 CHKERR pcomm->exchange_tags(th_gid, ents);
303}
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:359
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:429
#define _IT_NUMEREDFE_BY_NAME_FOR_LOOP_(PROBLEMPTR, NAME, IT)
virtual moab::Interface & get_moab()=0
virtual MPI_Comm & get_comm() const =0
virtual boost::shared_ptr< BasicEntityData > & get_basic_entity_data_ptr()=0
Get pointer to basic entity data.
Deprecated interface functions.

◆ resolveSharedFiniteElements() [2/2]

MoFEMErrorCode MoFEM::CommInterface::resolveSharedFiniteElements ( const std::string &  name,
const std::string &  fe_name,
int  verb = DEFAULT_VERBOSITY 
)

resolve shared entities for finite elements in the problem

Parameters
nameproblem name
fe_namefinite element name
verbverbosity level
Returns
error code

This allows for tag reduction or tag exchange, f.e.

CHKERR m_field.resolveSharedFiniteElements(problem_ptr,"SHELL_ELEMENT");
Tag th;
CHKERR mField.get_moab().tag_get_handle("ADAPT_ORDER",th);
ParallelComm* pcomm =
ParallelComm::get_pcomm(&mField.get_moab(),MYPCOMM_INDEX);
// CHKERR pcomm->reduce_tags(th,MPI_SUM,prisms);
CHKERR pcomm->exchange_tags(th,prisms);

Definition at line 305 of file CommInterface.cpp.

306 {
307 MoFEM::Interface &m_field = cOre;
309 const Problem *problem_ptr;
310 CHKERR m_field.get_problem(name, &problem_ptr);
311 CHKERR resolveSharedFiniteElements(problem_ptr, fe_name, verb);
313}
virtual const Problem * get_problem(const std::string problem_name) const =0
Get the problem object.
MoFEMErrorCode resolveSharedFiniteElements(const Problem *problem_ptr, const std::string &fe_name, int verb=DEFAULT_VERBOSITY)
resolve shared entities for finite elements in the problem