Testing problem for partitioned mesh.
static char help[] =
"...\n\n";
return 0;
}
private:
};
return 0;
}
private:
};
int main(
int argc,
char *argv[]) {
try {
PetscBool flg = PETSC_TRUE;
#if PETSC_VERSION_GE(3, 6, 4)
255, &flg);
#else
#endif
if (flg != PETSC_TRUE) {
SETERRQ(PETSC_COMM_SELF, 1, "*** ERROR -my_file (MESH FILE NEEDED)");
}
DMType dm_name = "DMMOFEM";
DM dm;
CHKERR DMCreate(PETSC_COMM_WORLD, &dm);
CHKERR DMSetType(dm, dm_name);
moab::Core mb_instance;
moab::Interface &moab = mb_instance;
ParallelComm *pcomm = ParallelComm::get_pcomm(&moab,
MYPCOMM_INDEX);
auto moab_comm_wrap =
boost::make_shared<WrapMPIComm>(PETSC_COMM_WORLD, false);
if (pcomm == NULL)
pcomm = new ParallelComm(&moab, moab_comm_wrap->get_comm());
const char *option;
option = "PARALLEL=BCAST_DELETE;PARALLEL_RESOLVE_SHARED_ENTS;PARTITION="
"PARALLEL_PARTITION;";
bit_level0.set(0);
root_set, 3, bit_level0);
int field_rank = 3;
#if PETSC_VERSION_GE(3, 6, 4)
&flg);
#else
&field_rank, &flg);
#endif
"FIELD1");
"FIELD2");
"FE_ONLY_DATA");
dm, PETSC_FALSE);
->checkMPIAIJWithArraysMatrixFillIn<PetscGlobalIdx_mi_tag>(
"TEST_PROBLEM", -1, -1, 1);
->checkMPIAIJMatrixFillIn<PetscGlobalIdx_mi_tag>("TEST_PROBLEM", -1, -1,
1);
std::vector<std::string> fields_list;
fields_list.push_back("FIELD1");
PetscSection section;
§ion);
CHKERR PetscSectionView(section, PETSC_VIEWER_STDOUT_WORLD);
CHKERR DMSetSection(dm, section);
CHKERR PetscSectionDestroy(§ion);
PetscBool save_file = PETSC_TRUE;
#if PETSC_VERSION_GE(3, 6, 4)
&flg);
#else
&save_file, &flg);
#endif
if (save_file) {
PetscViewer viewer;
CHKERR PetscViewerASCIIOpen(PETSC_COMM_WORLD,
"dm_build_partitioned_mesh.txt", &viewer);
CHKERR PetscViewerPushFormat(viewer, PETSC_VIEWER_ASCII_INFO);
CHKERR PetscViewerDestroy(&viewer);
}
int count = 0;
boost::make_shared<CountUp>(count));
boost::make_shared<CountDown>(count));
if (count)
count);
auto check_consistency_of_uids = [&]() {
for (auto &fe : *field_ents_ptr) {
if (fe->getOwnerProc() !=
(FieldEntity::getOwnerFromUniqueId(fe->getGlobalUniqueId()))) {
<< "UId owner proc "
<< FieldEntity::getOwnerFromUniqueId(fe->getGlobalUniqueId());
<< "Entity owner proc " << fe->getOwnerProc();
"UId and entity handle inconsistency");
}
if (fe->getEnt() !=
FieldEntity::getHandleFromUniqueId(fe->getLocalUniqueId())) {
<< "UId handle "
<< FieldEntity::getHandleFromUniqueId(fe->getLocalUniqueId());
MOFEM_LOG(
"SELF", Sev::error) <<
"Entity handle " << fe->getEnt();
"UId and entity handle inconsistency");
}
const auto field_bit_number_from_uid =
FieldEntity::getFieldBitNumberFromUniqueId(fe->getLocalUniqueId());
if (fe->getBitNumber() != field_bit_number_from_uid) {
<< "UId field bit " << field_bit_number_from_uid;
<< "Entity owner proc " << fe->getBitNumber();
"UId and entity handle inconsistency");
}
field_bit_number_from_uid - 1))) {
<< "UId field bit "
<< "Entity owner proc " << fe->getName();
"UId and entity handle inconsistency");
}
}
};
CHKERR check_consistency_of_uids();
}
return 0;
}
#define CATCH_ERRORS
Catch errors.
@ AINSWORTH_LEGENDRE_BASE
Ainsworth Cole (Legendre) approx. base .
@ L2
field with C-1 continuity
#define MYPCOMM_INDEX
default communicator number PCOMM
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
@ MOFEM_ATOM_TEST_INVALID
@ MOFEM_DATA_INCONSISTENCY
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
#define CHKERR
Inline error check.
FTensor::Index< 'm', SPACE_DIM > m
PetscErrorCode DMMoFEMSetIsPartitioned(DM dm, PetscBool is_partitioned)
PetscErrorCode DMMoFEMAddElement(DM dm, std::string fe_name)
add element to dm
PetscErrorCode DMMoFEMSetSquareProblem(DM dm, PetscBool square_problem)
set squared problem
PetscErrorCode DMMoFEMCreateMoFEM(DM dm, MoFEM::Interface *m_field_ptr, const char problem_name[], const MoFEM::BitRefLevel bit_level, const MoFEM::BitRefLevel bit_mask=MoFEM::BitRefLevel().set())
Must be called by user to set MoFEM data structures.
PetscErrorCode DMCreateMatrix_MoFEM(DM dm, Mat *M)
PetscErrorCode DMRegister_MoFEM(const char sname[])
Register MoFEM problem.
PetscErrorCode DMoFEMLoopFiniteElements(DM dm, const char fe_name[], MoFEM::FEMethod *method, CacheTupleWeakPtr cache_ptr=CacheTupleSharedPtr())
Executes FEMethod for finite elements in DM.
virtual const FieldEntity_multiIndex * get_field_ents() const =0
Get the field ents object.
virtual MoFEMErrorCode add_finite_element(const std::string &fe_name, enum MoFEMTypes bh=MF_EXCL, int verb=DEFAULT_VERBOSITY)=0
add finite element
virtual MoFEMErrorCode build_finite_elements(int verb=DEFAULT_VERBOSITY)=0
Build finite elements.
virtual MoFEMErrorCode modify_finite_element_add_field_col(const std::string &fe_name, const std::string name_row)=0
set field col which finite element use
virtual MoFEMErrorCode add_ents_to_finite_element_by_type(const EntityHandle entities, const EntityType type, const std::string &name, const bool recursive=true)=0
add entities to finite element
virtual MoFEMErrorCode modify_finite_element_add_field_data(const std::string &fe_name, const std::string name_filed)=0
set finite element field data
virtual MoFEMErrorCode modify_finite_element_add_field_row(const std::string &fe_name, const std::string name_row)=0
set field row which finite element use
virtual MoFEMErrorCode build_fields(int verb=DEFAULT_VERBOSITY)=0
virtual MoFEMErrorCode set_field_order(const EntityHandle meshset, const EntityType type, const std::string &name, const ApproximationOrder order, int verb=DEFAULT_VERBOSITY)=0
Set order approximation of the entities in the field.
virtual MoFEMErrorCode add_ents_to_field_by_type(const Range &ents, const EntityType type, const std::string &name, int verb=DEFAULT_VERBOSITY)=0
Add entities to field meshset.
#define MOFEM_LOG(channel, severity)
Log.
PetscErrorCode MoFEMErrorCode
MoFEM/PETSc error code.
std::bitset< BITFIELDID_SIZE > BitFieldId
Field Id.
std::bitset< BITREFLEVEL_SIZE > BitRefLevel
Bit structure attached to each entity identifying to what mesh entity is attached.
implementation of Data Operators for Forces and Sources
PetscErrorCode PetscOptionsGetInt(PetscOptions *, const char pre[], const char name[], PetscInt *ivalue, PetscBool *set)
PetscErrorCode PetscOptionsGetBool(PetscOptions *, const char pre[], const char name[], PetscBool *bval, PetscBool *set)
PetscErrorCode PetscOptionsGetString(PetscOptions *, const char pre[], const char name[], char str[], size_t size, PetscBool *set)
MoFEMErrorCode preProcess()
function is run at the beginning of loop
MoFEMErrorCode operator()()
function is run for every finite element
MoFEMErrorCode postProcess()
function is run at the end of loop
MoFEMErrorCode postProcess()
function is run at the end of loop
MoFEMErrorCode preProcess()
function is run at the beginning of loop
MoFEMErrorCode operator()()
function is run for every finite element
virtual MoFEMErrorCode build_adjacencies(const Range &ents, int verb=DEFAULT_VERBOSITY)=0
build adjacencies
virtual std::string get_field_name(const BitFieldId id) const =0
get field name from id
virtual MoFEMErrorCode add_field(const std::string &name, const FieldSpace space, const FieldApproximationBase base, const FieldCoefficientsNumber nb_of_coefficients, const TagType tag_type=MB_TAG_SPARSE, const enum MoFEMTypes bh=MF_EXCL, int verb=DEFAULT_VERBOSITY)=0
Add field.
static MoFEMErrorCode Initialize(int *argc, char ***args, const char file[], const char help[])
Initializes the MoFEM database PETSc, MOAB and MPI.
static MoFEMErrorCode Finalize()
Checks for options to be called at the conclusion of the program.
Deprecated interface functions.
Section manager is used to create indexes and sections.
Matrix manager is used to build and partition problems.
intrusive_ptr for managing petsc objects
MoFEMErrorCode getInterface(IFACE *&iface) const
Get interface refernce to pointer of interface.