[Push operators to pipeline] More...

#include "tutorials/vec-2/src/Monitor.hpp"

Inheritance diagram for Monitor:

Collaboration diagram for Monitor:

Public Member Functions
	Monitor (SmartPetscObj< DM > dm, MoFEM::Interface &m_field, boost::shared_ptr< PostProcEle > post_proc, boost::shared_ptr< PostProcFaceEle > post_proc_bdry, boost::shared_ptr< MatrixDouble > velocity_field_ptr, boost::shared_ptr< MatrixDouble > x2_field_ptr, boost::shared_ptr< MatrixDouble > geometry_field_ptr, std::array< double, 3 > pass_field_eval_coords, boost::shared_ptr< SetPtsData > pass_field_eval_data)

MoFEMErrorCode	postProcess ()
	function is run at the end of loop

	Monitor (SmartPetscObj< DM > dm, boost::shared_ptr< PostProcEle > post_proc)

MoFEMErrorCode	preProcess ()
	function is run at the beginning of loop

MoFEMErrorCode	operator() ()
	function is run for every finite element

MoFEMErrorCode	postProcess ()
	function is run at the end of loop

	Monitor (SmartPetscObj< DM > dm, boost::shared_ptr< PostProcEle > post_proc)

MoFEMErrorCode	preProcess ()
	function is run at the beginning of loop

MoFEMErrorCode	operator() ()
	function is run for every finite element

MoFEMErrorCode	postProcess ()
	function is run at the end of loop

	Monitor (SmartPetscObj< DM > dm, std::pair< boost::shared_ptr< PostProcEleDomain >, boost::shared_ptr< PostProcEleBdy > > pair_post_proc, boost::shared_ptr< DomainEle > reaction_fe)

MoFEMErrorCode	postProcess ()

	Monitor (SmartPetscObj< DM > dm, boost::shared_ptr< PostProcEle > post_proc)

MoFEMErrorCode	postProcess ()
	function is run at the end of loop

	Monitor (SmartPetscObj< DM > dm, boost::shared_ptr< PostProcEle > post_proc)

MoFEMErrorCode	postProcess ()
	function is run at the end of loop

	Monitor (SmartPetscObj< DM > dm, boost::shared_ptr< moab::Core > post_proc_mesh, boost::shared_ptr< PostProcEleDomainCont > post_proc, boost::shared_ptr< PostProcEleBdyCont > post_proc_edge, std::pair< boost::shared_ptr< BoundaryEle >, boost::shared_ptr< VectorDouble > > p)

MoFEMErrorCode	postProcess ()
	function is run at the end of loop

	Monitor (SmartPetscObj< DM > dm, std::pair< boost::shared_ptr< PostProcEleDomain >, boost::shared_ptr< PostProcEleBdy > > pair_post_proc_fe, boost::shared_ptr< DomainEle > reaction_fe, std::vector< boost::shared_ptr< ScalingMethod > > smv)

MoFEMErrorCode	postProcess ()
	function is run at the end of loop

Public Member Functions inherited from MoFEM::FEMethod
MoFEMErrorCode	query_interface (boost::typeindex::type_index type_index, UnknownInterface **iface) const

	FEMethod ()=default

auto	getFEName () const
	get finite element name

auto	getDataDofsPtr () const

auto	getDataVectorDofsPtr () const

const FieldEntity_vector_view &	getDataFieldEnts () const

boost::shared_ptr< FieldEntity_vector_view > &	getDataFieldEntsPtr () const

auto &	getRowFieldEnts () const

auto &	getRowFieldEntsPtr () const

auto &	getColFieldEnts () const

auto &	getColFieldEntsPtr () const

auto	getRowDofsPtr () const

auto	getColDofsPtr () const

auto	getNumberOfNodes () const

EntityHandle	getFEEntityHandle () const

MoFEMErrorCode	getNodeData (const std::string field_name, VectorDouble &data, const bool reset_dofs=true)

Public Member Functions inherited from MoFEM::BasicMethod
	BasicMethod ()

virtual	~BasicMethod ()=default

int	getNinTheLoop () const
	get number of evaluated element in the loop

int	getLoopSize () const
	get loop size

auto	getLoHiFERank () const
	Get lo and hi processor rank of iterated entities.

auto	getLoFERank () const
	Get upper rank in loop for iterating elements.

auto	getHiFERank () const
	Get upper rank in loop for iterating elements.

unsigned int	getFieldBitNumber (std::string field_name) const

MoFEMErrorCode	copyBasicMethod (const BasicMethod &basic)
	Copy data from other base method to this base method.

boost::weak_ptr< CacheTuple >	getCacheWeakPtr () const
	Get the cache weak ptr object.

Public Member Functions inherited from MoFEM::KspMethod
MoFEMErrorCode	query_interface (boost::typeindex::type_index type_index, UnknownInterface **iface) const

	KspMethod ()

virtual	~KspMethod ()=default

MoFEMErrorCode	copyKsp (const KspMethod &ksp)
	copy data form another method

Public Member Functions inherited from MoFEM::PetscData
	PetscData ()

virtual	~PetscData ()=default

MoFEMErrorCode	copyPetscData (const PetscData &petsc_data)

Public Member Functions inherited from MoFEM::UnknownInterface
template<class IFACE >
MoFEMErrorCode	registerInterface (bool error_if_registration_failed=true)
	Register interface.

template<class IFACE >
MoFEMErrorCode	getInterface (IFACE *&iface) const
	Get interface reference to pointer of interface.

template<class IFACE >
MoFEMErrorCode	getInterface (IFACE **const iface) const
	Get interface pointer to pointer of interface.

template<class IFACE , typename boost::enable_if< boost::is_pointer< IFACE >, int >::type = 0>
IFACE	getInterface () const
	Get interface pointer to pointer of interface.

template<class IFACE , typename boost::enable_if< boost::is_reference< IFACE >, int >::type = 0>
IFACE	getInterface () const
	Get reference to interface.

template<class IFACE >
IFACE *	getInterface () const
	Function returning pointer to interface.

virtual	~UnknownInterface ()=default

Public Member Functions inherited from MoFEM::SnesMethod
MoFEMErrorCode	query_interface (boost::typeindex::type_index type_index, UnknownInterface **iface) const

	SnesMethod ()

virtual	~SnesMethod ()=default

MoFEMErrorCode	copySnes (const SnesMethod &snes)
	Copy snes data.

Public Member Functions inherited from MoFEM::TSMethod
MoFEMErrorCode	query_interface (boost::typeindex::type_index type_index, UnknownInterface **iface) const

	TSMethod ()

virtual	~TSMethod ()=default

MoFEMErrorCode	copyTs (const TSMethod &ts)
	Copy TS solver data.

Public Member Functions inherited from MoFEM::TaoMethod
MoFEMErrorCode	query_interface (boost::typeindex::type_index type_index, UnknownInterface **iface) const

	TaoMethod ()

virtual	~TaoMethod ()=default

MoFEMErrorCode	copyTao (const TaoMethod &tao)
	Copy TAO data.

Public Attributes
MoFEM::Interface &	mField

Public Attributes inherited from MoFEM::FEMethod
std::string	feName
	Name of finite element.

boost::shared_ptr< const NumeredEntFiniteElement >	numeredEntFiniteElementPtr

boost::function< bool(FEMethod *fe_method_ptr)>	exeTestHook
	Tet if element to skip element.

Public Attributes inherited from MoFEM::BasicMethod
int	nInTheLoop
	number currently of processed method

int	loopSize
	local number oe methods to process

std::pair< int, int >	loHiFERank
	Llo and hi processor rank of iterated entities.

int	rAnk
	processor rank

int	sIze
	number of processors in communicator

const RefEntity_multiIndex *	refinedEntitiesPtr
	container of mofem dof entities

const RefElement_multiIndex *	refinedFiniteElementsPtr
	container of mofem finite element entities

const Problem *	problemPtr
	raw pointer to problem

const Field_multiIndex *	fieldsPtr
	raw pointer to fields container

const FieldEntity_multiIndex *	entitiesPtr
	raw pointer to container of field entities

const DofEntity_multiIndex *	dofsPtr
	raw pointer container of dofs

const FiniteElement_multiIndex *	finiteElementsPtr
	raw pointer to container finite elements

const EntFiniteElement_multiIndex *	finiteElementsEntitiesPtr

const FieldEntityEntFiniteElementAdjacencyMap_multiIndex *	adjacenciesPtr

boost::function< MoFEMErrorCode()>	preProcessHook
	Hook function for pre-processing.

boost::function< MoFEMErrorCode()>	postProcessHook
	Hook function for post-processing.

boost::function< MoFEMErrorCode()>	operatorHook
	Hook function for operator.

boost::movelib::unique_ptr< bool >	vecAssembleSwitch

boost::movelib::unique_ptr< bool >	matAssembleSwitch

boost::weak_ptr< CacheTuple >	cacheWeakPtr

Public Attributes inherited from MoFEM::KspMethod
KSPContext	ksp_ctx
	Context.

KSP	ksp
	KSP solver.

Vec &	ksp_f

Mat &	ksp_A

Mat &	ksp_B

Public Attributes inherited from MoFEM::PetscData
Switches	data_ctx

Vec	f

Mat	A

Mat	B

Vec	x

Vec	dx

Vec	x_t

Vec	x_tt

Public Attributes inherited from MoFEM::SnesMethod
SNESContext	snes_ctx

SNES	snes
	snes solver

Vec &	snes_x
	state vector

Vec &	snes_dx
	solution update

Vec &	snes_f
	residual

Mat &	snes_A
	jacobian matrix

Mat &	snes_B
	preconditioner of jacobian matrix

Public Attributes inherited from MoFEM::TSMethod
TS	ts
	time solver

TSContext	ts_ctx

PetscInt	ts_step
	time step number

PetscReal	ts_a
	shift for U_t (see PETSc Time Solver)

PetscReal	ts_aa
	shift for U_tt shift for U_tt

PetscReal	ts_t
	time

PetscReal	ts_dt
	time step size

Vec &	ts_u
	state vector

Vec &	ts_u_t
	time derivative of state vector

Vec &	ts_u_tt
	second time derivative of state vector

Vec &	ts_F
	residual vector

Mat &	ts_A

Mat &	ts_B
	Preconditioner for ts_A.

Public Attributes inherited from MoFEM::TaoMethod
TAOContext	tao_ctx

Tao	tao
	tao solver

Vec &	tao_x

Vec &	tao_f
	state vector

Mat &	tao_A
	gradient vector

Mat &	tao_B
	hessian matrix

Static Public Attributes
static constexpr int	saveEveryNthStep = 1

Static Public Attributes inherited from MoFEM::PetscData
static constexpr Switches	CtxSetNone = PetscData::Switches(CTX_SET_NONE)

static constexpr Switches	CtxSetF = PetscData::Switches(CTX_SET_F)

static constexpr Switches	CtxSetA = PetscData::Switches(CTX_SET_A)

static constexpr Switches	CtxSetB = PetscData::Switches(CTX_SET_B)

static constexpr Switches	CtxSetX = PetscData::Switches(CTX_SET_X)

static constexpr Switches	CtxSetDX = PetscData::Switches(CTX_SET_DX)

static constexpr Switches	CtxSetX_T = PetscData::Switches(CTX_SET_X_T)

static constexpr Switches	CtxSetX_TT = PetscData::Switches(CTX_SET_X_TT)

static constexpr Switches	CtxSetTime = PetscData::Switches(CTX_SET_TIME)

Private Attributes
SmartPetscObj< DM >	dM

boost::shared_ptr< PostProcEle >	postProc

boost::shared_ptr< PostProcFaceEle >	postProcBdy

boost::shared_ptr< MatrixDouble >	velocityFieldPtr

boost::shared_ptr< MatrixDouble >	x2FieldPtr

boost::shared_ptr< MatrixDouble >	geometryFieldPtr

std::array< double, 3 >	fieldEvalCoords

boost::shared_ptr< SetPtsData >	fieldEvalData

boost::shared_ptr< PostProcEleDomain >	postProcDomain

boost::shared_ptr< PostProcEleBdy >	postProcSkin

boost::shared_ptr< DomainEle >	reactionFe

PetscInt	saveEvery = 1

boost::shared_ptr< moab::Core >	postProcMesh

boost::shared_ptr< PostProcEleDomainCont >	postProc

boost::shared_ptr< PostProcEleBdyCont >	postProcEdge

boost::shared_ptr< BoundaryEle >	liftFE

boost::shared_ptr< VectorDouble >	liftVec

boost::shared_ptr< PostProcEleDomain >	domainPostProcFe

boost::shared_ptr< PostProcEleBdy >	skinPostProcFe

boost::shared_ptr< FEMethod >	reactionFE

boost::shared_ptr< BoundaryEle >	integrateTraction

SmartPetscObj< Vec >	fRes

VecOfTimeScalingMethods	vecOfTimeScalingMethods

Additional Inherited Members
Public Types inherited from MoFEM::KspMethod
enum	KSPContext { CTX_SETFUNCTION , CTX_OPERATORS , CTX_KSPNONE }
	pass information about context of KSP/DM for with finite element is computed More...

Public Types inherited from MoFEM::PetscData
enum	DataContext { CTX_SET_NONE = 0 , CTX_SET_F = 1 << 0 , CTX_SET_A = 1 << 1 , CTX_SET_B = 1 << 2 , CTX_SET_X = 1 << 3 , CTX_SET_DX = 1 << 4 , CTX_SET_X_T = 1 << 5 , CTX_SET_X_TT = 1 << 6 , CTX_SET_TIME = 1 << 7 }

using	Switches = std::bitset<8>

Public Types inherited from MoFEM::SnesMethod
enum	SNESContext { CTX_SNESSETFUNCTION , CTX_SNESSETJACOBIAN , CTX_SNESNONE }

Public Types inherited from MoFEM::TSMethod
enum	TSContext { CTX_TSSETRHSFUNCTION , CTX_TSSETRHSJACOBIAN , CTX_TSSETIFUNCTION , CTX_TSSETIJACOBIAN , CTX_TSTSMONITORSET , CTX_TSNONE }

Public Types inherited from MoFEM::TaoMethod
enum	TAOContext { CTX_TAO_OBJECTIVE , CTX_TAO_GRADIENT , CTX_TAO_HESSIAN , CTX_TAO_NONE }

Static Public Member Functions inherited from MoFEM::UnknownInterface
static MoFEMErrorCode	getLibVersion (Version &version)
	Get library version.

static MoFEMErrorCode	getFileVersion (moab::Interface &moab, Version &version)
	Get database major version.

static MoFEMErrorCode	setFileVersion (moab::Interface &moab, Version version=Version(MoFEM_VERSION_MAJOR, MoFEM_VERSION_MINOR, MoFEM_VERSION_BUILD))
	Get database major version.

static MoFEMErrorCode	getInterfaceVersion (Version &version)
	Get database major version.

Detailed Description

[Push operators to pipeline]

[Push operators to pip]

Monitor class for post-processing results.

Monitor solution.

Monitor solution

This functions is called by TS solver at the end of each step. It is used to output results to the hard drive.

Monitor solution

This functions is called by TS kso at the end of each step. It is used

Examples: PlasticOpsMonitor.hpp, adolc_plasticity.cpp, dynamic_first_order_con_law.cpp, free_surface.cpp, heat_equation.cpp, photon_diffusion.cpp, plastic.cpp, reaction_diffusion.cpp, shallow_wave.cpp, and wave_equation.cpp.

Definition at line 774 of file dynamic_first_order_con_law.cpp.

Constructor & Destructor Documentation

◆ Monitor() [1/8]

Monitor::Monitor	(	SmartPetscObj< DM >	dm,
		MoFEM::Interface &	m_field,
		boost::shared_ptr< PostProcEle >	post_proc,
		boost::shared_ptr< PostProcFaceEle >	post_proc_bdry,
		boost::shared_ptr< MatrixDouble >	velocity_field_ptr,
		boost::shared_ptr< MatrixDouble >	x2_field_ptr,
		boost::shared_ptr< MatrixDouble >	geometry_field_ptr,
		std::array< double, 3 >	pass_field_eval_coords,
		boost::shared_ptr< SetPtsData >	pass_field_eval_data )

inline

Examples: adolc_plasticity.cpp, dynamic_first_order_con_law.cpp, free_surface.cpp, heat_equation.cpp, shallow_wave.cpp, and wave_equation.cpp.

Definition at line 776 of file dynamic_first_order_con_law.cpp.

      : dM(dm), mField(m_field), postProc(post_proc),
        postProcBdy(post_proc_bdry), velocityFieldPtr(velocity_field_ptr),
        x2FieldPtr(x2_field_ptr), geometryFieldPtr(geometry_field_ptr),
        fieldEvalCoords(pass_field_eval_coords),
        fieldEvalData(pass_field_eval_data){};

◆ Monitor() [2/8]

Monitor::Monitor	(	SmartPetscObj< DM >	dm,
		boost::shared_ptr< PostProcEle >	post_proc )

inline

Definition at line 68 of file heat_equation.cpp.

69 : dM(dm), postProc(post_proc){};

◆ Monitor() [3/8]

Monitor::Monitor	(	SmartPetscObj< DM >	dm,
		boost::shared_ptr< PostProcEle >	post_proc )

inline

Definition at line 65 of file wave_equation.cpp.

66 : dM(dm), postProc(post_proc){};

◆ Monitor() [4/8]

Monitor::Monitor	(	SmartPetscObj< DM >	dm,
		std::pair< boost::shared_ptr< PostProcEleDomain >, boost::shared_ptr< PostProcEleBdy > >	pair_post_proc,
		boost::shared_ptr< DomainEle >	reaction_fe )

inline

Definition at line 7 of file Monitor.hpp.

      : dM(dm), postProcDomain(pair_post_proc.first),
        postProcSkin(pair_post_proc.second), reactionFe(reaction_fe) {
    CHK_THROW_MESSAGE(PetscOptionsGetInt(PETSC_NULLPTR, "", "-save_every",
                                         &saveEvery, PETSC_NULLPTR),
                      "Cannot get -save_every option");
  }

◆ Monitor() [5/8]

Monitor::Monitor	(	SmartPetscObj< DM >	dm,
		boost::shared_ptr< PostProcEle >	post_proc )

inline

Definition at line 309 of file nonlinear_dynamic_elastic.cpp.

310 : dM(dm), postProc(post_proc){};

◆ Monitor() [6/8]

Monitor::Monitor	(	SmartPetscObj< DM >	dm,
		boost::shared_ptr< PostProcEle >	post_proc )

inline

Definition at line 731 of file shallow_wave.cpp.

732 : dM(dm), postProc(post_proc){};

◆ Monitor() [7/8]

Monitor::Monitor	(	SmartPetscObj< DM >	dm,
		boost::shared_ptr< moab::Core >	post_proc_mesh,
		boost::shared_ptr< PostProcEleDomainCont >	post_proc,
		boost::shared_ptr< PostProcEleBdyCont >	post_proc_edge,
		std::pair< boost::shared_ptr< BoundaryEle >, boost::shared_ptr< VectorDouble > >	p )

inline

Definition at line 1989 of file free_surface.cpp.

1995 : dM(dm), postProcMesh(post_proc_mesh), postProc(post_proc),

1996 postProcEdge(post_proc_edge), liftFE(p.first), liftVec(p.second) {}

Monitor::postProcMesh

boost::shared_ptr< moab::Core > postProcMesh

Definition free_surface.cpp:2036

Monitor::liftVec

boost::shared_ptr< VectorDouble > liftVec

Definition free_surface.cpp:2040

Monitor::liftFE

boost::shared_ptr< BoundaryEle > liftFE

Definition free_surface.cpp:2039

Monitor::postProcEdge

boost::shared_ptr< PostProcEleBdyCont > postProcEdge

Definition free_surface.cpp:2038

◆ Monitor() [8/8]

Monitor::Monitor	(	SmartPetscObj< DM >	dm,
		std::pair< boost::shared_ptr< PostProcEleDomain >, boost::shared_ptr< PostProcEleBdy > >	pair_post_proc_fe,
		boost::shared_ptr< DomainEle >	reaction_fe,
		std::vector< boost::shared_ptr< ScalingMethod > >	smv )

inline

Definition at line 603 of file adolc_plasticity.cpp.

      : dM(dm), reactionFE(reaction_fe), vecOfTimeScalingMethods(smv) {
    fRes = createDMVector(dM);
    domainPostProcFe = pair_post_proc_fe.first;
    skinPostProcFe = pair_post_proc_fe.second;
 
    MoFEM::Interface *m_field_ptr;
    CHKERR DMoFEMGetInterfacePtr(dM, &m_field_ptr);
#ifdef ADD_CONTACT
    auto get_integrate_traction = [&]() {
      auto integrate_traction = boost::make_shared<BoundaryEle>(*m_field_ptr);
      auto common_data_ptr = boost::make_shared<ContactOps::CommonData>();
      CHK_THROW_MESSAGE(
          (AddHOOps<SPACE_DIM - 1, SPACE_DIM, SPACE_DIM>::add(
              integrate_traction->getOpPtrVector(), {HDIV}, "GEOMETRY")),
          "Apply transform");
      // We have to integrate on curved face geometry, thus integration weight
      // have to adjusted.
      integrate_traction->getOpPtrVector().push_back(
          new OpSetHOWeightsOnSubDim<SPACE_DIM>());
      integrate_traction->getRuleHook = [](int, int, int approx_order) {
        return 2 * approx_order + 2 - 1;
      };
 
      CHK_THROW_MESSAGE(
          (ContactOps::opFactoryCalculateTraction<SPACE_DIM, GAUSS,
                                                  BoundaryEleOp>(
              integrate_traction->getOpPtrVector(), "SIGMA", 0)),
          "push operators to calculate traction");
 
      return integrate_traction;
    };
 
    integrateTraction = get_integrate_traction();
#endif
  }

Member Function Documentation

◆ operator()() [1/2]

MoFEMErrorCode Monitor::operator() ( )

inlinevirtual

function is run for every finite element

It is used to calculate element local matrices and assembly. It can be used for post-processing.

Reimplemented from MoFEM::BasicMethod.

Examples: heat_equation.cpp, and wave_equation.cpp.

Definition at line 72 of file heat_equation.cpp.

72{ return 0; }

◆ operator()() [2/2]

MoFEMErrorCode Monitor::operator() ( )

inlinevirtual

function is run for every finite element

It is used to calculate element local matrices and assembly. It can be used for post-processing.

Reimplemented from MoFEM::BasicMethod.

Definition at line 69 of file wave_equation.cpp.

69{ return 0; }

◆ postProcess() [1/8]

MoFEMErrorCode Monitor::postProcess ( )

inlinevirtual

function is run at the end of loop

It is used to assembly matrices and vectors, calculating global variables, f.e. total internal energy, ect.

Iterating over dofs: Example1 iterating over dofs in row by name of the field for(IT_GET_FEROW_BY_NAME_DOFS_FOR_LOOP(this,"DISPLACEMENT",it)) { ... }

Reimplemented from MoFEM::BasicMethod.

Examples: adolc_plasticity.cpp, dynamic_first_order_con_law.cpp, free_surface.cpp, heat_equation.cpp, shallow_wave.cpp, and wave_equation.cpp.

Definition at line 789 of file dynamic_first_order_con_law.cpp.

                               {
    MoFEMFunctionBegin;
 
    auto *simple = mField.getInterface<Simple>();
 
    CHKERR mField.getInterface<FieldEvaluatorInterface>()
        ->evalFEAtThePoint<SPACE_DIM>(
            fieldEvalCoords.data(), 1e-12, simple->getProblemName(),
            simple->getDomainFEName(), fieldEvalData, mField.get_comm_rank(),
            mField.get_comm_rank(), getCacheWeakPtr().lock(), MF_EXIST, QUIET);
 
    if (velocityFieldPtr->size1()) {
      auto t_vel = getFTensor1FromMat<SPACE_DIM>(*velocityFieldPtr);
      auto t_x2_field = getFTensor1FromMat<SPACE_DIM>(*x2FieldPtr);
      auto t_geom = getFTensor1FromMat<SPACE_DIM>(*geometryFieldPtr);
 
      double u_x = t_x2_field(0) - t_geom(0);
      double u_y = t_x2_field(1) - t_geom(1);
      double u_z = t_x2_field(2) - t_geom(2);
 
      MOFEM_LOG("SYNC", Sev::inform)
          << "Velocities x: " << t_vel(0) << " y: " << t_vel(1)
          << " z: " << t_vel(2) << "\n";
      MOFEM_LOG("SYNC", Sev::inform) << "Displacement x: " << u_x
                                     << " y: " << u_y << " z: " << u_z << "\n";
    }
 
    for (auto m : mField.getInterface<MeshsetsManager>()->getCubitMeshsetPtr(
             std::regex((boost::format("%s(.*)") % "Data_Vertex").str()))) {
      Range ents;
      mField.get_moab().get_entities_by_dimension(m->getMeshset(), 0, ents,
                                                  true);
      auto print_vets = [](boost::shared_ptr<FieldEntity> ent_ptr) {
        MoFEMFunctionBegin;
        if (!(ent_ptr->getPStatus() & PSTATUS_NOT_OWNED)) {
          MOFEM_LOG("SYNC", Sev::inform)
              << "Velocities: " << ent_ptr->getEntFieldData()[0] << " "
              << ent_ptr->getEntFieldData()[1] << " "
              << ent_ptr->getEntFieldData()[2] << "\n";
        }
        MoFEMFunctionReturn(0);
      };
      CHKERR mField.getInterface<FieldBlas>()->fieldLambdaOnEntities(
          print_vets, "V", &ents);
    }
    MOFEM_LOG_SEVERITY_SYNC(mField.get_comm(), Sev::inform);
 
    PetscBool print_volume = PETSC_FALSE;
    CHKERR PetscOptionsGetBool(PETSC_NULLPTR, "", "-print_volume", &print_volume,
                               PETSC_NULLPTR);
 
    PetscBool print_skin = PETSC_FALSE;
    CHKERR PetscOptionsGetBool(PETSC_NULLPTR, "", "-print_skin", &print_skin,
                               PETSC_NULLPTR);
 
    int save_every_nth_step = 1;
    CHKERR PetscOptionsGetInt(PETSC_NULLPTR, "", "-save_step",
                              &save_every_nth_step, PETSC_NULLPTR);
    if (ts_step % save_every_nth_step == 0) {
 
      if (print_volume) {
        CHKERR DMoFEMLoopFiniteElements(dM, "dFE", postProc);
        CHKERR postProc->writeFile(
            "out_step_" + boost::lexical_cast<std::string>(ts_step) + ".h5m");
      }
 
      if (print_skin) {
        CHKERR DMoFEMLoopFiniteElements(dM, "bFE", postProcBdy);
        CHKERR postProcBdy->writeFile(
            "out_boundary_" + boost::lexical_cast<std::string>(ts_step) +
            ".h5m");
      }
    }
    MoFEMFunctionReturn(0);
  }

◆ postProcess() [2/8]

MoFEMErrorCode Monitor::postProcess ( )

inlinevirtual

function is run at the end of loop

It is used to assembly matrices and vectors, calculating global variables, f.e. total internal energy, ect.

Iterating over dofs: Example1 iterating over dofs in row by name of the field for(IT_GET_FEROW_BY_NAME_DOFS_FOR_LOOP(this,"DISPLACEMENT",it)) { ... }

Reimplemented from MoFEM::BasicMethod.

Definition at line 76 of file heat_equation.cpp.

                               {
    MoFEMFunctionBegin;
    if (ts_step % saveEveryNthStep == 0) {
      CHKERR DMoFEMLoopFiniteElements(dM, "dFE", postProc);
      CHKERR postProc->writeFile(
          "out_level_" + boost::lexical_cast<std::string>(ts_step) + ".h5m");
    }
    MoFEMFunctionReturn(0);
  }

◆ postProcess() [3/8]

MoFEMErrorCode Monitor::postProcess ( )

inlinevirtual

function is run at the end of loop

It is used to assembly matrices and vectors, calculating global variables, f.e. total internal energy, ect.

Iterating over dofs: Example1 iterating over dofs in row by name of the field for(IT_GET_FEROW_BY_NAME_DOFS_FOR_LOOP(this,"DISPLACEMENT",it)) { ... }

Reimplemented from MoFEM::BasicMethod.

Definition at line 73 of file wave_equation.cpp.

                               {
    MoFEMFunctionBegin;
    if (ts_step % saveEveryNthStep == 0) {
      CHKERR DMoFEMLoopFiniteElements(dM, "dFE", postProc);
      CHKERR postProc->writeFile(
          "out_level_" + boost::lexical_cast<std::string>(ts_step) + ".h5m");
    }
    MoFEMFunctionReturn(0);
  }

◆ postProcess() [4/8]

MoFEMErrorCode Monitor::postProcess ( )

virtual

postProcess

Reimplemented from MoFEM::BasicMethod.

◆ postProcess() [5/8]

MoFEMErrorCode Monitor::postProcess ( )

inlinevirtual

function is run at the end of loop

It is used to assembly matrices and vectors, calculating global variables, f.e. total internal energy, ect.

Iterating over dofs: Example1 iterating over dofs in row by name of the field for(IT_GET_FEROW_BY_NAME_DOFS_FOR_LOOP(this,"DISPLACEMENT",it)) { ... }

Reimplemented from MoFEM::BasicMethod.

Definition at line 311 of file nonlinear_dynamic_elastic.cpp.

                               {
    MoFEMFunctionBegin;
    constexpr int save_every_nth_step = 1;
    if (ts_step % save_every_nth_step == 0) {
      CHKERR DMoFEMLoopFiniteElements(dM, "dFE", postProc);
      CHKERR postProc->writeFile(
          "out_step_" + boost::lexical_cast<std::string>(ts_step) + ".h5m");
    }
    MoFEMFunctionReturn(0);
  }

◆ postProcess() [6/8]

MoFEMErrorCode Monitor::postProcess ( )

inlinevirtual

function is run at the end of loop

It is used to assembly matrices and vectors, calculating global variables, f.e. total internal energy, ect.

Iterating over dofs: Example1 iterating over dofs in row by name of the field for(IT_GET_FEROW_BY_NAME_DOFS_FOR_LOOP(this,"DISPLACEMENT",it)) { ... }

Reimplemented from MoFEM::BasicMethod.

Definition at line 733 of file shallow_wave.cpp.

                               {
    MoFEMFunctionBegin;
    constexpr int save_every_nth_step = 50;
    if (ts_step % save_every_nth_step == 0) {
      CHKERR DMoFEMLoopFiniteElements(dM, "dFE", postProc);
      CHKERR postProc->writeFile(
          "out_step_" + boost::lexical_cast<std::string>(ts_step) + ".h5m");
      MOFEM_LOG("SW", Sev::verbose)
          << "writing vector in binary to vector.dat ...";
      PetscViewer viewer;
      PetscViewerBinaryOpen(PETSC_COMM_WORLD, "vector.dat", FILE_MODE_WRITE,
                            &viewer);
      VecView(ts_u, viewer);
      PetscViewerDestroy(&viewer);
    }
    MoFEMFunctionReturn(0);
  }

◆ postProcess() [7/8]

MoFEMErrorCode Monitor::postProcess ( )

inlinevirtual

function is run at the end of loop

It is used to assembly matrices and vectors, calculating global variables, f.e. total internal energy, ect.

Iterating over dofs: Example1 iterating over dofs in row by name of the field for(IT_GET_FEROW_BY_NAME_DOFS_FOR_LOOP(this,"DISPLACEMENT",it)) { ... }

Reimplemented from MoFEM::BasicMethod.

Definition at line 1997 of file free_surface.cpp.

                               {
    MoFEMFunctionBegin;
 
    MOFEM_LOG("FS", Sev::verbose) << "Monitor";
    constexpr int save_every_nth_step = 1;
    if (ts_step % save_every_nth_step == 0) {
      MOFEM_LOG("FS", Sev::verbose) << "Mesh pre proc";
      MoFEM::Interface *m_field_ptr;
      CHKERR DMoFEMGetInterfacePtr(dM, &m_field_ptr);
      auto post_proc_begin =
          boost::make_shared<PostProcBrokenMeshInMoabBaseBegin>(*m_field_ptr,
                                                                postProcMesh);
      auto post_proc_end = boost::make_shared<PostProcBrokenMeshInMoabBaseEnd>(
          *m_field_ptr, postProcMesh);
      CHKERR DMoFEMPreProcessFiniteElements(dM, post_proc_begin->getFEMethod());
      CHKERR DMoFEMLoopFiniteElements(dM, "dFE", postProc,
                                      this->getCacheWeakPtr());
      CHKERR DMoFEMLoopFiniteElements(dM, "bFE", postProcEdge,
                                      this->getCacheWeakPtr());
      CHKERR DMoFEMPostProcessFiniteElements(dM, post_proc_end->getFEMethod());
      CHKERR post_proc_end->writeFile(
          "out_step_" + boost::lexical_cast<std::string>(ts_step) + ".h5m");
      MOFEM_LOG("FS", Sev::verbose) << "Mesh pre proc done";
    }
 
    liftVec->resize(SPACE_DIM, false);
    liftVec->clear();
    CHKERR DMoFEMLoopFiniteElements(dM, "bFE", liftFE, this->getCacheWeakPtr());
    MPI_Allreduce(MPI_IN_PLACE, &(*liftVec)[0], SPACE_DIM, MPI_DOUBLE, MPI_SUM,
                  MPI_COMM_WORLD);
    MOFEM_LOG("FS", Sev::inform)
        << "Step " << ts_step << " time " << ts_t
        << " lift vec x: " << (*liftVec)[0] << " y: " << (*liftVec)[1];
 
    MoFEMFunctionReturn(0);
  }

◆ postProcess() [8/8]

MoFEMErrorCode Monitor::postProcess ( )

inlinevirtual

function is run at the end of loop

It is used to assembly matrices and vectors, calculating global variables, f.e. total internal energy, ect.

Iterating over dofs: Example1 iterating over dofs in row by name of the field for(IT_GET_FEROW_BY_NAME_DOFS_FOR_LOOP(this,"DISPLACEMENT",it)) { ... }

Reimplemented from MoFEM::BasicMethod.

Definition at line 644 of file adolc_plasticity.cpp.

                               {
    MoFEMFunctionBegin;
    int save_every_nth_step = 1;
    CHKERR PetscOptionsGetInt(PETSC_NULLPTR, "", "-save_every_nth_step",
                              &save_every_nth_step, PETSC_NULLPTR);
#ifdef ADD_CONTACT
    auto print_traction = [&](const std::string msg) {
      MoFEMFunctionBegin;
      MoFEM::Interface *m_field_ptr;
      CHKERR DMoFEMGetInterfacePtr(dM, &m_field_ptr);
      if (!m_field_ptr->get_comm_rank()) {
        const double *t_ptr;
        CHKERR VecGetArrayRead(ContactOps::CommonData::totalTraction, &t_ptr);
        MOFEM_LOG_C("CONTACT", Sev::inform, "%s time %3.4e %3.4e %3.4e %3.4e",
                    msg.c_str(), ts_t, t_ptr[0], t_ptr[1], t_ptr[2]);
        CHKERR VecRestoreArrayRead(ContactOps::CommonData::totalTraction,
                                   &t_ptr);
      }
      MoFEMFunctionReturn(0);
    };
#endif
 
    auto make_vtk = [&]() {
      MoFEMFunctionBegin;
      if (domainPostProcFe) {
        CHKERR DMoFEMLoopFiniteElements(dM, "dFE", domainPostProcFe,
                                        getCacheWeakPtr());
        CHKERR domainPostProcFe->writeFile(
            "out_plastic_" + boost::lexical_cast<std::string>(ts_step) +
            ".h5m");
      }
      if (skinPostProcFe) {
        CHKERR DMoFEMLoopFiniteElements(dM, "bFE", skinPostProcFe,
                                        getCacheWeakPtr());
        CHKERR skinPostProcFe->writeFile(
            "out_skin_plastic_" + boost::lexical_cast<std::string>(ts_step) +
            ".h5m");
      }
      MoFEMFunctionReturn(0);
    };
 
    if (!(ts_step % save_every_nth_step)) {
      CHKERR make_vtk();
    }
    if (reactionFE) {
      CHKERR VecZeroEntries(fRes);
      reactionFE->f = fRes;
      CHKERR DMoFEMLoopFiniteElements(dM, "dFE", reactionFE, getCacheWeakPtr());
      CHKERR VecAssemblyBegin(fRes);
      CHKERR VecAssemblyEnd(fRes);
      CHKERR VecGhostUpdateBegin(fRes, ADD_VALUES, SCATTER_REVERSE);
      CHKERR VecGhostUpdateEnd(fRes, ADD_VALUES, SCATTER_REVERSE);
 
      MoFEM::Interface *m_field_ptr;
      CHKERR DMoFEMGetInterfacePtr(dM, &m_field_ptr);
      CHKERR EssentialPreProcReaction<DisplacementCubitBcData>(
          *m_field_ptr, reactionFE, fRes)();
 
      double nrm;
      CHKERR VecNorm(fRes, NORM_2, &nrm);
      MOFEM_LOG("PlasticPrb", Sev::verbose)
          << "Residual norm " << nrm << " at time step " << ts_step;
    }
 
#ifdef ADD_CONTACT
    auto calculate_traction = [&] {
      MoFEMFunctionBegin;
      CHKERR VecZeroEntries(ContactOps::CommonData::totalTraction);
      CHKERR DMoFEMLoopFiniteElements(dM, "bFE", integrateTraction);
      CHKERR VecAssemblyBegin(ContactOps::CommonData::totalTraction);
      CHKERR VecAssemblyEnd(ContactOps::CommonData::totalTraction);
      MoFEMFunctionReturn(0);
    };
#endif
 
    auto get_min_max_displacement = [&]() {
      MoFEMFunctionBegin;
      MoFEM::Interface *m_field_ptr;
      CHKERR DMoFEMGetInterfacePtr(dM, &m_field_ptr);
 
      std::array<double, 4> a_min = {DBL_MAX, DBL_MAX, DBL_MAX, 0};
      std::array<double, 4> a_max = {-DBL_MAX, -DBL_MAX, -DBL_MAX, 0};
 
      auto get_min_max = [&](boost::shared_ptr<FieldEntity> field_entity_ptr) {
        MoFEMFunctionBegin;
        int d = 0;
        for (auto v : field_entity_ptr->getEntFieldData()) {
          a_min[d] = std::min(a_min[d], v);
          a_max[d] = std::max(a_max[d], v);
          ++d;
        }
        MoFEMFunctionReturn(0);
      };
 
      a_min[SPACE_DIM] = 0;
      a_max[SPACE_DIM] = 0;
 
      Range verts;
      CHKERR m_field_ptr->get_field_entities_by_type("U", MBVERTEX, verts);
      CHKERR m_field_ptr->getInterface<FieldBlas>()->fieldLambdaOnEntities(
          get_min_max, "U", &verts);
 
      auto mpi_reduce = [&](auto &a, auto op) {
        std::array<double, 3> a_mpi = {0, 0, 0};
        MPI_Allreduce(a.data(), a_mpi.data(), 3, MPI_DOUBLE, op,
                      m_field_ptr->get_comm());
        return a_mpi;
      };
 
      auto a_min_mpi = mpi_reduce(a_min, MPI_MIN);
      auto a_max_mpi = mpi_reduce(a_max, MPI_MAX);
 
      MOFEM_LOG("PlasticPrb", Sev::inform)
          << "Min displacement " << a_min_mpi[0] << " " << a_min_mpi[1] << " "
          << a_min_mpi[2];
      MOFEM_LOG("PlasticPrb", Sev::inform)
          << "Max displacement " << a_max_mpi[0] << " " << a_max_mpi[1] << " "
          << a_max_mpi[2];
      MoFEMFunctionReturn(0);
    };
    CHKERR get_min_max_displacement();
#ifdef ADD_CONTACT
    CHKERR calculate_traction();
    CHKERR print_traction("Contact force");
#endif
    double scale = 1;
    for (auto s : vecOfTimeScalingMethods) {
      scale *= s->getScale(this->ts_t);
    }
 
    MOFEM_LOG("PlasticPrb", Sev::inform)
        << "Time: " << this->ts_t << " scale: " << scale;
 
    MoFEMFunctionReturn(0);
  }