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Classes | Typedefs | Functions | Variables
prism_elements_from_surface.cpp File Reference
#include <MoFEM.hpp>

Go to the source code of this file.

Classes

struct  CoordsAndHandle
 
struct  PrismOp
 
struct  PrismFE
 
struct  Op< OP >
 
struct  TriFE
 
struct  QuadFE
 
struct  EdgeFE
 

Typedefs

using EdgeEle = EdgeElementForcesAndSourcesCore
 
typedef multi_index_container< CoordsAndHandle, indexed_by< hashed_unique< composite_key< CoordsAndHandle, member< CoordsAndHandle, int, &CoordsAndHandle::x >, member< CoordsAndHandle, int, &CoordsAndHandle::y >, member< CoordsAndHandle, int, &CoordsAndHandle::z > > > > > MapCoords
 

Functions

int main (int argc, char *argv[])
 

Variables

static char help [] = "...\n\n"
 
static constexpr int precision_exponent = 5
 
static constexpr int number_of_prisms_layers = 18
 
static constexpr double delta
 
static constexpr std::array< double, 3 > d3 = {0, 0, 0}
 
static constexpr std::array< double, 3 > d4 = {0, 0, delta}
 

Typedef Documentation

◆ EdgeEle

using EdgeEle = EdgeElementForcesAndSourcesCore

Definition at line 23 of file prism_elements_from_surface.cpp.

◆ MapCoords

typedef multi_index_container< CoordsAndHandle, indexed_by< hashed_unique<composite_key< CoordsAndHandle, member<CoordsAndHandle, int, &CoordsAndHandle::x>, member<CoordsAndHandle, int, &CoordsAndHandle::y>, member<CoordsAndHandle, int, &CoordsAndHandle::z> > > > > MapCoords
Examples
prism_elements_from_surface.cpp.

Definition at line 48 of file prism_elements_from_surface.cpp.

Function Documentation

◆ main()

int main ( int  argc,
char *  argv[] 
)

Definition at line 132 of file prism_elements_from_surface.cpp.

132 {
133
134 MoFEM::Core::Initialize(&argc, &argv, (char *)0, help);
135
136 try {
137
138 moab::Core mb_instance;
139 moab::Interface &moab = mb_instance;
140 int rank;
141 MPI_Comm_rank(PETSC_COMM_WORLD, &rank);
142
143 // Read parameters from line command
144 PetscBool flg = PETSC_TRUE;
145 char mesh_file_name[255];
146 CHKERR PetscOptionsGetString(PETSC_NULL, "", "-my_file", mesh_file_name,
147 255, &flg);
148 if (flg != PETSC_TRUE)
149 SETERRQ(PETSC_COMM_SELF, MOFEM_INVALID_DATA,
150 "error -my_file (MESH FILE NEEDED)");
151
152 // Read mesh to MOAB
153 const char *option;
154 option = ""; //"PARALLEL=BCAST;";//;DEBUG_IO";
155 CHKERR moab.load_file(mesh_file_name, 0, option);
156
157 Range tris;
158 CHKERR moab.get_entities_by_type(0, MBTRI, tris, false);
159 Range tris_verts;
160 CHKERR moab.get_connectivity(tris, tris_verts);
161 MatrixDouble tri_coords(tris_verts.size(), 3);
162 CHKERR moab.get_coords(tris_verts, &tri_coords(0, 0));
163
164 MoFEM::Core core(moab);
165 MoFEM::Interface &m_field = core;
166
167 std::array<Range, 3> edge_block;
168 for (auto b : {1, 2, 3})
169 CHKERR m_field.getInterface<MeshsetsManager>()->getEntitiesByDimension(
170 b, BLOCKSET, 1, edge_block[b - 1]);
171
172 PrismsFromSurfaceInterface *prisms_from_surface_interface;
173 CHKERR m_field.getInterface(prisms_from_surface_interface);
174
175 Range prisms;
176 CHKERR prisms_from_surface_interface->createPrisms(
177 tris, PrismsFromSurfaceInterface::NO_SWAP, prisms);
178 prisms_from_surface_interface->setThickness(prisms, d3.data(), d4.data());
179 Range add_prims_layer;
180 Range extrude_prisms = prisms;
181
182 for (int ll = 1; ll != number_of_prisms_layers; ++ll) {
183 prisms_from_surface_interface->createdVertices.clear();
184 CHKERR prisms_from_surface_interface->createPrismsFromPrisms(
185 extrude_prisms, false, add_prims_layer);
186 prisms_from_surface_interface->setThickness(add_prims_layer, d3.data(),
187 d4.data());
188 extrude_prisms = add_prims_layer;
189 prisms.merge(add_prims_layer);
190 add_prims_layer.clear();
191 }
192
193 EntityHandle meshset;
194 CHKERR moab.create_meshset(MESHSET_SET | MESHSET_TRACK_OWNER, meshset);
195 CHKERR moab.add_entities(meshset, prisms);
196
197 MapCoords map_coords;
198 Range verts;
199 CHKERR moab.get_connectivity(prisms, verts);
200 MatrixDouble coords(verts.size(), 3);
201 CHKERR moab.get_coords(verts, &coords(0, 0));
202
203 for (size_t v = 0; v != verts.size(); ++v)
204 map_coords.insert(CoordsAndHandle(&coords(v, 0), verts[v]));
205
206 EntityHandle one_prism_meshset;
207 CHKERR moab.create_meshset(MESHSET_SET | MESHSET_TRACK_OWNER,
208 one_prism_meshset);
209
210 std::array<double, 18> one_prism_coords = {0, 0, 0, 1, 0, 0, 0, 1, 0,
211 0, 0, 1, 1, 0, 1, 0, 1, 1};
212 std::array<EntityHandle, 6> one_prism_nodes;
213 for (int n = 0; n != 6; ++n)
214 CHKERR moab.create_vertex(&one_prism_coords[3 * n], one_prism_nodes[n]);
215 EntityHandle one_prism;
216 CHKERR m_field.get_moab().create_element(MBPRISM, one_prism_nodes.data(), 6,
217 one_prism);
218 Range one_prism_range;
219 one_prism_range.insert(one_prism);
220 CHKERR moab.add_entities(one_prism_meshset, one_prism_range);
221 Range one_prism_verts;
222 CHKERR moab.get_connectivity(one_prism_range, one_prism_verts);
223 CHKERR moab.add_entities(one_prism_meshset, one_prism_verts);
224 Range one_prism_adj_ents;
225 for (int d = 1; d != 3; ++d)
226 CHKERR moab.get_adjacencies(one_prism_range, d, true, one_prism_adj_ents,
227 moab::Interface::UNION);
228 CHKERR moab.add_entities(one_prism_meshset, one_prism_adj_ents);
229
230 BitRefLevel bit_level0;
231 bit_level0.set(0);
232 CHKERR m_field.getInterface<BitRefManager>()->setEntitiesBitRefLevel(
233 one_prism_range, bit_level0);
234 CHKERR prisms_from_surface_interface->seedPrismsEntities(one_prism_range,
235 bit_level0);
236
237 // Fields
238 CHKERR m_field.add_field("FIELD1", H1, AINSWORTH_LEGENDRE_BASE, 1);
239 CHKERR m_field.add_ents_to_field_by_type(one_prism_meshset, MBPRISM,
240 "FIELD1", VERY_NOISY);
241
242 CHKERR m_field.set_field_order(one_prism_meshset, MBVERTEX, "FIELD1", 1);
243 CHKERR m_field.set_field_order(one_prism_meshset, MBEDGE, "FIELD1", 5,
244 VERY_NOISY);
245 CHKERR m_field.set_field_order(one_prism_meshset, MBTRI, "FIELD1", 5);
246 CHKERR m_field.set_field_order(one_prism_meshset, MBQUAD, "FIELD1", 5,
247 VERY_NOISY);
248 CHKERR m_field.set_field_order(one_prism_meshset, MBPRISM, "FIELD1", 7,
249 VERY_NOISY);
250 CHKERR m_field.build_fields(VERY_NOISY);
251
252 // FE
253 CHKERR m_field.add_finite_element("PRISM");
254 CHKERR m_field.add_finite_element("EDGE");
255 CHKERR m_field.add_finite_element("TRI");
256 CHKERR m_field.add_finite_element("QUAD");
257
258 // Define rows/cols and element data
259 CHKERR m_field.modify_finite_element_add_field_row("PRISM", "FIELD1");
260 CHKERR m_field.modify_finite_element_add_field_col("PRISM", "FIELD1");
261 CHKERR m_field.modify_finite_element_add_field_data("PRISM", "FIELD1");
262 // Define rows/cols and element data
263 CHKERR m_field.modify_finite_element_add_field_row("EDGE", "FIELD1");
264 CHKERR m_field.modify_finite_element_add_field_col("EDGE", "FIELD1");
265 CHKERR m_field.modify_finite_element_add_field_data("EDGE", "FIELD1");
266 // Define rows/cols and element data
267 CHKERR m_field.modify_finite_element_add_field_row("TRI", "FIELD1");
268 CHKERR m_field.modify_finite_element_add_field_col("TRI", "FIELD1");
269 CHKERR m_field.modify_finite_element_add_field_data("TRI", "FIELD1");
270 // Define rows/cols and element data
271 CHKERR m_field.modify_finite_element_add_field_row("QUAD", "FIELD1");
272 CHKERR m_field.modify_finite_element_add_field_col("QUAD", "FIELD1");
273 CHKERR m_field.modify_finite_element_add_field_data("QUAD", "FIELD1");
274
275 CHKERR m_field.add_ents_to_finite_element_by_type(one_prism_meshset, MBEDGE,
276 "EDGE");
277 CHKERR m_field.add_ents_to_finite_element_by_type(one_prism_meshset, MBTRI,
278 "TRI");
279 CHKERR m_field.add_ents_to_finite_element_by_type(one_prism_meshset, MBQUAD,
280 "QUAD");
281 CHKERR m_field.add_ents_to_finite_element_by_type(one_prism_meshset,
282 MBPRISM, "PRISM");
283
284 // build finite elemnts
285 CHKERR m_field.build_finite_elements();
286 // //build adjacencies
287 CHKERR m_field.build_adjacencies(bit_level0);
288
289 // Problem
290 CHKERR m_field.add_problem("TEST_PROBLEM");
291
292 // set finite elements for problem
293 CHKERR m_field.modify_problem_add_finite_element("TEST_PROBLEM", "PRISM");
294 CHKERR m_field.modify_problem_add_finite_element("TEST_PROBLEM", "EDGE");
295 CHKERR m_field.modify_problem_add_finite_element("TEST_PROBLEM", "TRI");
296 CHKERR m_field.modify_problem_add_finite_element("TEST_PROBLEM", "QUAD");
297 // set refinement level for problem
298 CHKERR m_field.modify_problem_ref_level_add_bit("TEST_PROBLEM", bit_level0);
299
300 // build problem
301 ProblemsManager *prb_mng_ptr;
302 CHKERR m_field.getInterface(prb_mng_ptr);
303 CHKERR prb_mng_ptr->buildProblem("TEST_PROBLEM", true);
304 // partition
305 CHKERR prb_mng_ptr->partitionSimpleProblem("TEST_PROBLEM");
306 CHKERR prb_mng_ptr->partitionFiniteElements("TEST_PROBLEM");
307 // what are ghost nodes, see Petsc Manual
308 CHKERR prb_mng_ptr->partitionGhostDofs("TEST_PROBLEM");
309
310 PrismFE fe_prism(m_field, tri_coords);
311 fe_prism.getOpPtrVector().push_back(new PrismOp(moab, map_coords));
312 CHKERR m_field.loop_finite_elements("TEST_PROBLEM", "PRISM", fe_prism);
313
314 EdgeFE fe_edge(m_field, edge_block, one_prism);
315 fe_edge.getOpPtrVector().push_back(
316 new Op<EdgeElementForcesAndSourcesCore::UserDataOperator>(
317 moab, map_coords, one_prism));
318 CHKERR m_field.loop_finite_elements("TEST_PROBLEM", "EDGE", fe_edge);
319
320 TriFE fe_tri(m_field, tri_coords, one_prism);
321 fe_tri.getOpPtrVector().push_back(
322 new Op<FaceElementForcesAndSourcesCore::UserDataOperator>(
323 moab, map_coords, one_prism));
324 CHKERR m_field.loop_finite_elements("TEST_PROBLEM", "TRI", fe_tri);
325
326 QuadFE fe_quad(m_field, edge_block, one_prism);
327 fe_quad.getOpPtrVector().push_back(
328 new Op<FaceElementForcesAndSourcesCore::UserDataOperator>(
329 moab, map_coords, one_prism));
330 CHKERR m_field.loop_finite_elements("TEST_PROBLEM", "QUAD", fe_quad);
331
332 CHKERR moab.write_file("prism_mesh.vtk", "VTK", "", &meshset, 1);
333 CHKERR moab.write_file("one_prism_mesh.vtk", "VTK", "", &one_prism_meshset,
334 1);
335 }
336 CATCH_ERRORS;
337
338 MoFEM::Core::Finalize();
339 return 0;
340}
VERY_NOISY
@ VERY_NOISY
Definition: definitions.h:212
CATCH_ERRORS
#define CATCH_ERRORS
Catch errors.
Definition: definitions.h:372
AINSWORTH_LEGENDRE_BASE
@ AINSWORTH_LEGENDRE_BASE
Ainsworth Cole (Legendre) approx. base .
Definition: definitions.h:60
H1
@ H1
continuous field
Definition: definitions.h:85
BLOCKSET
@ BLOCKSET
Definition: definitions.h:148
MOFEM_INVALID_DATA
@ MOFEM_INVALID_DATA
Definition: definitions.h:36
CHKERR
#define CHKERR
Inline error check.
Definition: definitions.h:535
n
FTensor::Index< 'n', SPACE_DIM > n
Definition: fluid_structure_eigenproblem.cpp:66
MoFEM::CoreInterface::add_finite_element
virtual MoFEMErrorCode add_finite_element(const std::string &fe_name, enum MoFEMTypes bh=MF_EXCL, int verb=DEFAULT_VERBOSITY)=0
add finite element
MoFEM::CoreInterface::build_finite_elements
virtual MoFEMErrorCode build_finite_elements(int verb=DEFAULT_VERBOSITY)=0
Build finite elements.
MoFEM::CoreInterface::modify_finite_element_add_field_col
virtual MoFEMErrorCode modify_finite_element_add_field_col(const std::string &fe_name, const std::string name_row)=0
set field col which finite element use
MoFEM::CoreInterface::add_ents_to_finite_element_by_type
virtual MoFEMErrorCode add_ents_to_finite_element_by_type(const EntityHandle entities, const EntityType type, const std::string &name, const bool recursive=true)=0
add entities to finite element
MoFEM::CoreInterface::modify_finite_element_add_field_data
virtual MoFEMErrorCode modify_finite_element_add_field_data(const std::string &fe_name, const std::string name_filed)=0
set finite element field data
MoFEM::CoreInterface::modify_finite_element_add_field_row
virtual MoFEMErrorCode modify_finite_element_add_field_row(const std::string &fe_name, const std::string name_row)=0
set field row which finite element use
MoFEM::CoreInterface::build_fields
virtual MoFEMErrorCode build_fields(int verb=DEFAULT_VERBOSITY)=0
MoFEM::CoreInterface::set_field_order
virtual MoFEMErrorCode set_field_order(const EntityHandle meshset, const EntityType type, const std::string &name, const ApproximationOrder order, int verb=DEFAULT_VERBOSITY)=0
Set order approximation of the entities in the field.
MoFEM::CoreInterface::add_ents_to_field_by_type
virtual MoFEMErrorCode add_ents_to_field_by_type(const Range &ents, const EntityType type, const std::string &name, int verb=DEFAULT_VERBOSITY)=0
Add entities to field meshset.
MoFEM::CoreInterface::loop_finite_elements
virtual MoFEMErrorCode loop_finite_elements(const std::string problem_name, const std::string &fe_name, FEMethod &method, boost::shared_ptr< NumeredEntFiniteElement_multiIndex > fe_ptr=nullptr, MoFEMTypes bh=MF_EXIST, CacheTupleWeakPtr cache_ptr=CacheTupleSharedPtr(), int verb=DEFAULT_VERBOSITY)=0
Make a loop over finite elements.
MoFEM::MeshsetsManager::getEntitiesByDimension
MoFEMErrorCode getEntitiesByDimension(const int ms_id, const unsigned int cubit_bc_type, const int dimension, Range &entities, const bool recursive=true) const
get entities from CUBIT/meshset of a particular entity dimension
Definition: MeshsetsManager.cpp:603
MoFEM::ProblemsManager::partitionGhostDofs
MoFEMErrorCode partitionGhostDofs(const std::string name, int verb=VERBOSE)
determine ghost nodes
Definition: ProblemsManager.cpp:2339
MoFEM::ProblemsManager::partitionSimpleProblem
MoFEMErrorCode partitionSimpleProblem(const std::string name, int verb=VERBOSE)
partition problem dofs
Definition: ProblemsManager.cpp:1537
MoFEM::ProblemsManager::buildProblem
MoFEMErrorCode buildProblem(const std::string name, const bool square_matrix, int verb=VERBOSE)
build problem data structures
Definition: ProblemsManager.cpp:87
MoFEM::ProblemsManager::partitionFiniteElements
MoFEMErrorCode partitionFiniteElements(const std::string name, bool part_from_moab=false, int low_proc=-1, int hi_proc=-1, int verb=VERBOSE)
partition finite elements
Definition: ProblemsManager.cpp:2167
MoFEM::CoreInterface::add_problem
virtual MoFEMErrorCode add_problem(const std::string &name, enum MoFEMTypes bh=MF_EXCL, int verb=DEFAULT_VERBOSITY)=0
Add problem.
MoFEM::CoreInterface::modify_problem_ref_level_add_bit
virtual MoFEMErrorCode modify_problem_ref_level_add_bit(const std::string &name_problem, const BitRefLevel &bit)=0
add ref level to problem
MoFEM::CoreInterface::modify_problem_add_finite_element
virtual MoFEMErrorCode modify_problem_add_finite_element(const std::string name_problem, const std::string &fe_name)=0
add finite element to problem, this add entities assigned to finite element to a particular problem
v
const double v
phase velocity of light in medium (cm/ns)
Definition: initial_diffusion.cpp:40
mesh_file_name
char mesh_file_name[255]
Definition: mesh_smoothing.cpp:23
FTensor::d
const Tensor1_Expr< const dTensor0< T, Dim, i >, typename promote< T, double >::V, Dim, i > d(const Tensor0< T * > &a, const Index< i, Dim > index, const Tensor1< int, Dim > &d_ijk, const Tensor1< double, Dim > &d_xyz)
Definition: dTensor0.hpp:27
MoFEM::Types::BitRefLevel
std::bitset< BITREFLEVEL_SIZE > BitRefLevel
Bit structure attached to each entity identifying to what mesh entity is attached.
Definition: Types.hpp:40
MoFEM::PetscOptionsGetString
PetscErrorCode PetscOptionsGetString(PetscOptions *, const char pre[], const char name[], char str[], size_t size, PetscBool *set)
Definition: DeprecatedPetsc.hpp:172
number_of_prisms_layers
static constexpr int number_of_prisms_layers
Definition: prism_elements_from_surface.cpp:17
help
static char help[]
Definition: prism_elements_from_surface.cpp:14
d4
static constexpr std::array< double, 3 > d4
Definition: prism_elements_from_surface.cpp:21
MapCoords
multi_index_container< CoordsAndHandle, indexed_by< hashed_unique< composite_key< CoordsAndHandle, member< CoordsAndHandle, int, &CoordsAndHandle::x >, member< CoordsAndHandle, int, &CoordsAndHandle::y >, member< CoordsAndHandle, int, &CoordsAndHandle::z > > > > > MapCoords
Definition: prism_elements_from_surface.cpp:48
d3
static constexpr std::array< double, 3 > d3
Definition: prism_elements_from_surface.cpp:20
MoFEM::BitRefManager
Managing BitRefLevels.
Definition: BitRefManager.hpp:21
MoFEM::CoreInterface::get_moab
virtual moab::Interface & get_moab()=0
MoFEM::CoreInterface::build_adjacencies
virtual MoFEMErrorCode build_adjacencies(const Range &ents, int verb=DEFAULT_VERBOSITY)=0
build adjacencies
MoFEM::CoreInterface::add_field
virtual MoFEMErrorCode add_field(const std::string &name, const FieldSpace space, const FieldApproximationBase base, const FieldCoefficientsNumber nb_of_coefficients, const TagType tag_type=MB_TAG_SPARSE, const enum MoFEMTypes bh=MF_EXCL, int verb=DEFAULT_VERBOSITY)=0
Add field.
MoFEM::CoreTmp< 0 >
Core (interface) class.
Definition: Core.hpp:82
MoFEM::CoreTmp< 0 >::Initialize
static MoFEMErrorCode Initialize(int *argc, char ***args, const char file[], const char help[])
Initializes the MoFEM database PETSc, MOAB and MPI.
Definition: Core.cpp:72
MoFEM::CoreTmp< 0 >::Finalize
static MoFEMErrorCode Finalize()
Checks for options to be called at the conclusion of the program.
Definition: Core.cpp:112
MoFEM::DeprecatedCoreInterface
Deprecated interface functions.
Definition: DeprecatedCoreInterface.hpp:16
MoFEM::MeshsetsManager
Interface for managing meshsets containing materials and boundary conditions.
Definition: MeshsetsManager.hpp:104
MoFEM::PrismsFromSurfaceInterface::createdVertices
std::map< EntityHandle, EntityHandle > createdVertices
Definition: PrismsFromSurfaceInterface.hpp:24
MoFEM::PrismsFromSurfaceInterface::createPrisms
MoFEMErrorCode createPrisms(const Range &ents, const SwapType swap_type, Range &prisms, int verb=-1)
Make prisms from triangles.
Definition: PrismsFromSurfaceInterface.cpp:22
MoFEM::PrismsFromSurfaceInterface::setThickness
MoFEMErrorCode setThickness(const Range &prisms, const double director3[], const double director4[])
Definition: PrismsFromSurfaceInterface.cpp:161
MoFEM::PrismsFromSurfaceInterface::seedPrismsEntities
MoFEMErrorCode seedPrismsEntities(Range &prisms, const BitRefLevel &bit, int verb=-1)
Seed prism entities by bit level.
Definition: PrismsFromSurfaceInterface.cpp:110
MoFEM::PrismsFromSurfaceInterface::createPrismsFromPrisms
MoFEMErrorCode createPrismsFromPrisms(const Range &prisms, bool from_down, Range &out_prisms, int verb=-1)
Make prisms by extruding top or bottom prisms.
Definition: PrismsFromSurfaceInterface.cpp:143
MoFEM::ProblemsManager
Problem manager is used to build and partition problems.
Definition: ProblemsManager.hpp:21
MoFEM::UnknownInterface::getInterface
MoFEMErrorCode getInterface(IFACE *&iface) const
Get interface refernce to pointer of interface.
Definition: UnknownInterface.hpp:93

Variable Documentation

◆ d3

constexpr std::array<double, 3> d3 = {0, 0, 0}
staticconstexpr
Examples
prism_elements_from_surface.cpp.

Definition at line 20 of file prism_elements_from_surface.cpp.

◆ d4

constexpr std::array<double, 3> d4 = {0, 0, delta}
staticconstexpr
Examples
prism_elements_from_surface.cpp.

Definition at line 21 of file prism_elements_from_surface.cpp.

◆ delta

constexpr double delta
staticconstexpr
Initial value:
=
1. / static_cast<double>(number_of_prisms_layers)
Examples
prism_elements_from_surface.cpp, simple_contact.cpp, simple_contact_thermal.cpp, and wavy_surface.cpp.

Definition at line 18 of file prism_elements_from_surface.cpp.

◆ help

char help[] = "...\n\n"
static

Definition at line 14 of file prism_elements_from_surface.cpp.

◆ number_of_prisms_layers

constexpr int number_of_prisms_layers = 18
staticconstexpr
Examples
prism_elements_from_surface.cpp.

Definition at line 17 of file prism_elements_from_surface.cpp.

◆ precision_exponent

constexpr int precision_exponent = 5
staticconstexpr
Examples
prism_elements_from_surface.cpp.

Definition at line 16 of file prism_elements_from_surface.cpp.

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