v0.14.0
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nonlinear_dynamics.cpp File Reference
#include <BasicFiniteElements.hpp>
#include <ElasticMaterials.hpp>
#include <SurfacePressureComplexForLazy.hpp>
#include <TimeForceScale.hpp>

Go to the source code of this file.

Classes

struct  MonitorPostProc
 
struct  MonitorRestart
 

Functions

int main (int argc, char *argv[])
 

Variables

static char help [] = "...\n\n"
 

Function Documentation

◆ main()

int main ( int  argc,
char *  argv[] 
)
Examples
nonlinear_dynamics.cpp.

Definition at line 226 of file nonlinear_dynamics.cpp.

226  {
227 
228  const string default_options = "-ksp_type fgmres \n"
229  "-pc_type lu \n"
230  "-pc_factor_mat_solver_type mumps \n"
231  "-mat_mumps_icntl_20 0 \n"
232  "-ksp_atol 1e-10 \n"
233  "-ksp_rtol 1e-10 \n"
234  "-snes_monitor \n"
235  "-snes_type newtonls \n"
236  "-snes_linesearch_type basic \n"
237  "-snes_max_it 100 \n"
238  "-snes_atol 1e-7 \n"
239  "-snes_rtol 1e-7 \n"
240  "-ts_monitor \n"
241  "-ts_type alpha \n";
242 
243  string param_file = "param_file.petsc";
244  if (!static_cast<bool>(ifstream(param_file))) {
245  std::ofstream file(param_file.c_str(), std::ios::ate);
246  if (file.is_open()) {
247  file << default_options;
248  file.close();
249  }
250  }
251 
252  MoFEM::Core::Initialize(&argc, &argv, param_file.c_str(), help);
253 
254  // Add logging channel for example
255  auto core_log = logging::core::get();
256  core_log->add_sink(
257  LogManager::createSink(LogManager::getStrmWorld(), "DYNAMIC"));
258  LogManager::setLog("DYNAMIC");
259  MOFEM_LOG_TAG("DYNAMIC", "dynamic");
260 
261  try {
262 
263  moab::Core mb_instance;
264  moab::Interface &moab = mb_instance;
265 
266  ParallelComm *pcomm = ParallelComm::get_pcomm(&moab, MYPCOMM_INDEX);
267  auto moab_comm_wrap =
268  boost::make_shared<WrapMPIComm>(PETSC_COMM_WORLD, false);
269  if (pcomm == NULL)
270  pcomm = new ParallelComm(&moab, moab_comm_wrap->get_comm());
271 
272  FieldApproximationBase base = NOBASE;
273  char mesh_file_name[255];
274  PetscBool is_partitioned = PETSC_FALSE;
275  PetscBool linear = PETSC_TRUE;
276  PetscInt disp_order = 1;
277  PetscInt vel_order = 1;
278  PetscBool is_solve_at_time_zero = PETSC_FALSE;
279 
280  auto read_command_line_parameters = [&]() {
281  MoFEMFunctionBegin;
282  PetscBool flg = PETSC_TRUE;
283  CHKERR PetscOptionsGetString(PETSC_NULL, PETSC_NULL, "-my_file",
284  mesh_file_name, 255, &flg);
285  if (flg != PETSC_TRUE)
286  SETERRQ(PETSC_COMM_SELF, 1, "Error -my_file (mesh file needed)");
287 
288  // use this if your mesh is partitioned and you run code on parts,
289  // you can solve very big problems
290  CHKERR PetscOptionsGetBool(PETSC_NULL, PETSC_NULL, "-my_is_partitioned",
291  &is_partitioned, &flg);
292 
293  CHKERR PetscOptionsGetBool(PETSC_NULL, PETSC_NULL, "-is_linear", &linear,
294  PETSC_NULL);
295 
296  enum bases { LEGENDRE, LOBATTO, BERNSTEIN_BEZIER, LASBASETOP };
297  const char *list_bases[] = {"legendre", "lobatto", "bernstein_bezier"};
298  PetscInt choice_base_value = BERNSTEIN_BEZIER;
299  CHKERR PetscOptionsGetEList(PETSC_NULL, NULL, "-base", list_bases,
300  LASBASETOP, &choice_base_value, PETSC_NULL);
301  if (choice_base_value == LEGENDRE)
302  base = AINSWORTH_LEGENDRE_BASE;
303  else if (choice_base_value == LOBATTO)
304  base = AINSWORTH_LOBATTO_BASE;
305  else if (choice_base_value == BERNSTEIN_BEZIER)
306  base = AINSWORTH_BERNSTEIN_BEZIER_BASE;
307 
308  CHKERR PetscOptionsGetInt(PETSC_NULL, PETSC_NULL, "-my_disp_order",
309  &disp_order, &flg);
310  if (flg != PETSC_TRUE)
311  disp_order = 1;
312 
313  CHKERR PetscOptionsGetInt(PETSC_NULL, PETSC_NULL, "-my_vel_order",
314  &vel_order, &flg);
315  if (flg != PETSC_TRUE)
316  vel_order = disp_order;
317 
318  CHKERR PetscOptionsGetBool(PETSC_NULL, PETSC_NULL,
319  "-my_solve_at_time_zero",
320  &is_solve_at_time_zero, &flg);
321 
322  MoFEMFunctionReturn(0);
323  };
324 
325  auto read_mesh = [&]() {
326  MoFEMFunctionBegin;
327  if (is_partitioned == PETSC_TRUE) {
328  // Read mesh to MOAB
329  const char *option;
330  option = "PARALLEL=BCAST_DELETE;"
331  "PARALLEL_RESOLVE_SHARED_ENTS;"
332  "PARTITION=PARALLEL_PARTITION;";
333  CHKERR moab.load_file(mesh_file_name, 0, option);
334  } else {
335  const char *option;
336  option = "";
337  CHKERR moab.load_file(mesh_file_name, 0, option);
338  }
339  MoFEMFunctionReturn(0);
340  };
341 
342  CHKERR read_command_line_parameters();
343  CHKERR read_mesh();
344 
345  MoFEM::Core core(moab);
346  MoFEM::Interface &m_field = core;
347 
348  // ref meshset ref level 0
349  BitRefLevel bit_level0;
350  bit_level0.set(0);
351  EntityHandle meshset_level0;
352  CHKERR moab.create_meshset(MESHSET_SET, meshset_level0);
353  CHKERR m_field.getInterface<BitRefManager>()->setBitRefLevelByDim(
354  0, 3, bit_level0);
355  CHKERR m_field.getInterface<BitRefManager>()->getEntitiesByRefLevel(
356  bit_level0, BitRefLevel().set(), meshset_level0);
357 
358  // Fields
359  CHKERR m_field.add_field("MESH_NODE_POSITIONS", H1, AINSWORTH_LEGENDRE_BASE,
360  3, MB_TAG_SPARSE, MF_ZERO);
361  CHKERR m_field.add_ents_to_field_by_type(0, MBTET, "MESH_NODE_POSITIONS");
362  CHKERR m_field.set_field_order(0, MBTET, "MESH_NODE_POSITIONS", 2);
363  CHKERR m_field.set_field_order(0, MBTRI, "MESH_NODE_POSITIONS", 2);
364  CHKERR m_field.set_field_order(0, MBEDGE, "MESH_NODE_POSITIONS", 2);
365  CHKERR m_field.set_field_order(0, MBVERTEX, "MESH_NODE_POSITIONS", 1);
366 
367  bool check_if_spatial_field_exist = m_field.check_field("DISPLACEMENT");
368  CHKERR m_field.add_field("DISPLACEMENT", H1, base, 3, MB_TAG_SPARSE,
369  MF_ZERO);
370  // add entities (by tets) to the field
371  CHKERR m_field.add_ents_to_field_by_type(0, MBTET, "DISPLACEMENT");
372 
373  // set app. order
374  CHKERR m_field.set_field_order(0, MBTET, "DISPLACEMENT", disp_order);
375  CHKERR m_field.set_field_order(0, MBTRI, "DISPLACEMENT", disp_order);
376  CHKERR m_field.set_field_order(0, MBEDGE, "DISPLACEMENT", disp_order);
377  if (base == AINSWORTH_BERNSTEIN_BEZIER_BASE)
378  CHKERR m_field.set_field_order(0, MBVERTEX, "DISPLACEMENT", disp_order);
379  else
380  CHKERR m_field.set_field_order(0, MBVERTEX, "DISPLACEMENT", 1);
381 
382  // Add nodal force element
383  CHKERR MetaNeumannForces::addNeumannBCElements(m_field, "DISPLACEMENT");
384  CHKERR MetaEdgeForces::addElement(m_field, "DISPLACEMENT");
385  CHKERR MetaNodalForces::addElement(m_field, "DISPLACEMENT");
386  // Add fluid pressure finite elements
387  FluidPressure fluid_pressure_fe(m_field);
388  fluid_pressure_fe.addNeumannFluidPressureBCElements("DISPLACEMENT");
389  CHKERR addHOOpsFace3D("MESH_NODE_POSITIONS", fluid_pressure_fe.getLoopFe(),
390  false, false);
391  fluid_pressure_fe.setNeumannFluidPressureFiniteElementOperators(
392  "DISPLACEMENT", PETSC_NULL, false, true);
393 
394  // Velocity
395  CHKERR m_field.add_field("VELOCITY", H1, base, 3, MB_TAG_SPARSE, MF_ZERO);
396  CHKERR m_field.add_ents_to_field_by_type(0, MBTET, "VELOCITY");
397 
398  CHKERR m_field.set_field_order(0, MBTET, "VELOCITY", vel_order);
399  CHKERR m_field.set_field_order(0, MBTRI, "VELOCITY", vel_order);
400  CHKERR m_field.set_field_order(0, MBEDGE, "VELOCITY", vel_order);
401  if (base == AINSWORTH_BERNSTEIN_BEZIER_BASE)
402  CHKERR m_field.set_field_order(0, MBVERTEX, "VELOCITY", vel_order);
403  else
404  CHKERR m_field.set_field_order(0, MBVERTEX, "VELOCITY", 1);
405 
406  CHKERR m_field.add_field("DOT_DISPLACEMENT", H1, base, 3, MB_TAG_SPARSE,
407  MF_ZERO);
408  CHKERR m_field.add_ents_to_field_by_type(0, MBTET, "DOT_DISPLACEMENT");
409  CHKERR m_field.set_field_order(0, MBTET, "DOT_DISPLACEMENT", disp_order);
410  CHKERR m_field.set_field_order(0, MBTRI, "DOT_DISPLACEMENT", disp_order);
411  CHKERR m_field.set_field_order(0, MBEDGE, "DOT_DISPLACEMENT", disp_order);
412  if (base == AINSWORTH_BERNSTEIN_BEZIER_BASE)
413  CHKERR m_field.set_field_order(0, MBVERTEX, "DOT_DISPLACEMENT",
414  disp_order);
415  else
416  CHKERR m_field.set_field_order(0, MBVERTEX, "DOT_DISPLACEMENT", 1);
417 
418  CHKERR m_field.add_field("DOT_VELOCITY", H1, base, 3, MB_TAG_SPARSE,
419  MF_ZERO);
420  CHKERR m_field.add_ents_to_field_by_type(0, MBTET, "DOT_VELOCITY");
421  CHKERR m_field.set_field_order(0, MBTET, "DOT_VELOCITY", vel_order);
422  CHKERR m_field.set_field_order(0, MBTRI, "DOT_VELOCITY", vel_order);
423  CHKERR m_field.set_field_order(0, MBEDGE, "DOT_VELOCITY", vel_order);
424  if (base == AINSWORTH_BERNSTEIN_BEZIER_BASE)
425  CHKERR m_field.set_field_order(0, MBVERTEX, "DOT_VELOCITY", disp_order);
426  else
427  CHKERR m_field.set_field_order(0, MBVERTEX, "DOT_VELOCITY", 1);
428 
429  // Set material model and mass element
430  NonlinearElasticElement elastic(m_field, 2);
431  ElasticMaterials elastic_materials(m_field);
432  CHKERR elastic_materials.setBlocks(elastic.setOfBlocks);
433  // NonlinearElasticElement::FunctionsToCalculatePiolaKirchhoffI<adouble>
434  // st_venant_kirchhoff_material_adouble;
435  // NonlinearElasticElement::FunctionsToCalculatePiolaKirchhoffI<double>
436  // st_venant_kirchhoff_material_double; CHKERR
437  // elastic.setBlocks(&st_venant_kirchhoff_material_double,&st_venant_kirchhoff_material_adouble);
438  CHKERR elastic.addElement("ELASTIC", "DISPLACEMENT");
439  CHKERR addHOOpsVol("MESH_NODE_POSITIONS", elastic.getLoopFeRhs(), true, false,
440  false, false);
441  CHKERR addHOOpsVol("MESH_NODE_POSITIONS", elastic.getLoopFeLhs(), true, false,
442  false, false);
443  CHKERR addHOOpsVol("MESH_NODE_POSITIONS", elastic.getLoopFeEnergy(), true,
444  false, false, false);
445  CHKERR elastic.setOperators("DISPLACEMENT", "MESH_NODE_POSITIONS", false,
446  true);
447 
448  // set mass element
449  ConvectiveMassElement inertia(m_field, 1);
450  // CHKERR inertia.setBlocks();
451  CHKERR elastic_materials.setBlocks(inertia.setOfBlocks);
452  CHKERR inertia.addConvectiveMassElement("MASS_ELEMENT", "VELOCITY",
453  "DISPLACEMENT");
454  CHKERR inertia.addVelocityElement("VELOCITY_ELEMENT", "VELOCITY",
455  "DISPLACEMENT");
456 
457  // Add possibility to load accelerogram
458  {
459  string name = "-my_accelerogram";
460  char time_file_name[255];
461  PetscBool flg;
462  CHKERR PetscOptionsGetString(PETSC_NULL, PETSC_NULL, name.c_str(),
463  time_file_name, 255, &flg);
464  if (flg == PETSC_TRUE) {
465  inertia.methodsOp.push_back(new TimeAccelerogram(name));
466  }
467  }
468 
469  // damper element
470  KelvinVoigtDamper damper(m_field);
471  CHKERR elastic_materials.setBlocks(damper.blockMaterialDataMap);
472  {
473  KelvinVoigtDamper::CommonData &common_data = damper.commonData;
474  common_data.spatialPositionName = "DISPLACEMENT";
475  common_data.spatialPositionNameDot = "DOT_DISPLACEMENT";
476  CHKERR m_field.add_finite_element("DAMPER", MF_ZERO);
477  CHKERR m_field.modify_finite_element_add_field_row("DAMPER",
478  "DISPLACEMENT");
479  CHKERR m_field.modify_finite_element_add_field_col("DAMPER",
480  "DISPLACEMENT");
481  CHKERR m_field.modify_finite_element_add_field_data("DAMPER",
482  "DISPLACEMENT");
483 
484  if (m_field.check_field("MESH_NODE_POSITIONS")) {
485  CHKERR m_field.modify_finite_element_add_field_data(
486  "DAMPER", "MESH_NODE_POSITIONS");
487  }
488  std::map<int, KelvinVoigtDamper::BlockMaterialData>::iterator bit =
489  damper.blockMaterialDataMap.begin();
490  for (; bit != damper.blockMaterialDataMap.end(); bit++) {
491  bit->second.lInear = linear;
492  int id = bit->first;
493  KelvinVoigtDamper::BlockMaterialData &material_data = bit->second;
494  damper.constitutiveEquationMap.insert(
495  id, new KelvinVoigtDamper::ConstitutiveEquation<adouble>(
496  material_data));
497  CHKERR m_field.add_ents_to_finite_element_by_type(bit->second.tEts,
498  MBTET, "DAMPER");
499  }
500  CHKERR damper.setOperators(3);
501  }
502 
503  MonitorPostProc post_proc(m_field, elastic.setOfBlocks,
504  elastic.getLoopFeEnergy(),
505  inertia.getLoopFeEnergy());
506 
507  // elastic and mass element calculated in Kuu shell matrix problem. To
508  // calculate Mass element, velocity field is needed.
509  CHKERR m_field.modify_finite_element_add_field_data("ELASTIC", "VELOCITY");
510  CHKERR m_field.modify_finite_element_add_field_data("ELASTIC",
511  "DOT_DISPLACEMENT");
512  CHKERR m_field.modify_finite_element_add_field_data("ELASTIC",
513  "DOT_VELOCITY");
514 
515  // build field
516  CHKERR m_field.build_fields();
517  // CHKERR m_field.list_dofs_by_field_name("DISPLACEMENT");
518 
519  // 10 node tets
520  if (!check_if_spatial_field_exist) {
521  Projection10NodeCoordsOnField ent_method_material(m_field,
522  "MESH_NODE_POSITIONS");
523  CHKERR m_field.loop_dofs("MESH_NODE_POSITIONS", ent_method_material);
524  }
525 
526  // build finite elements
527  CHKERR m_field.build_finite_elements();
528  // build adjacencies
529  CHKERR m_field.build_adjacencies(bit_level0);
530 
531  // define problems
532  {
533  CHKERR m_field.add_problem("Kuu", MF_ZERO);
534  CHKERR m_field.modify_problem_add_finite_element("Kuu", "ELASTIC");
535  CHKERR m_field.modify_problem_add_finite_element("Kuu", "PRESSURE_FE");
536  CHKERR m_field.modify_problem_add_finite_element("Kuu", "FORCE_FE");
537  CHKERR m_field.modify_problem_add_finite_element("Kuu",
538  "FLUID_PRESSURE_FE");
539  CHKERR m_field.modify_problem_ref_level_add_bit("Kuu", bit_level0);
540 
541  ProblemsManager *prb_mng_ptr;
542  CHKERR m_field.getInterface(prb_mng_ptr);
543  if (is_partitioned) {
544  CHKERR prb_mng_ptr->buildProblemOnDistributedMesh("Kuu", true);
545  CHKERR prb_mng_ptr->partitionFiniteElements("Kuu", true, 0,
546  pcomm->size());
547  } else {
548  CHKERR prb_mng_ptr->buildProblem("Kuu", true);
549  CHKERR prb_mng_ptr->partitionProblem("Kuu");
550  CHKERR prb_mng_ptr->partitionFiniteElements("Kuu");
551  }
552  CHKERR prb_mng_ptr->partitionGhostDofs("Kuu");
553  }
554 
555  CHKERR m_field.add_problem("DYNAMICS", MF_ZERO);
556  // set finite elements for problems
557  CHKERR m_field.modify_problem_add_finite_element("DYNAMICS", "ELASTIC");
558  CHKERR m_field.modify_problem_add_finite_element("DYNAMICS", "DAMPER");
559  CHKERR m_field.modify_problem_add_finite_element("DYNAMICS", "PRESSURE_FE");
560  CHKERR m_field.modify_problem_add_finite_element("DYNAMICS", "FORCE_FE");
561  CHKERR m_field.modify_problem_add_finite_element("DYNAMICS",
562  "FLUID_PRESSURE_FE");
563  CHKERR m_field.modify_problem_add_finite_element("DYNAMICS",
564  "MASS_ELEMENT");
565  CHKERR m_field.modify_problem_add_finite_element("DYNAMICS",
566  "VELOCITY_ELEMENT");
567  // set refinement level for problem
568  CHKERR m_field.modify_problem_ref_level_add_bit("DYNAMICS", bit_level0);
569 
570  ProblemsManager *prb_mng_ptr;
571  CHKERR m_field.getInterface(prb_mng_ptr);
572  if (is_partitioned) {
573  CHKERR prb_mng_ptr->buildProblemOnDistributedMesh("DYNAMICS", true);
574  CHKERR prb_mng_ptr->partitionFiniteElements("DYNAMICS", true, 0,
575  pcomm->size());
576  } else {
577  CHKERR prb_mng_ptr->buildProblem("DYNAMICS", true);
578  CHKERR prb_mng_ptr->partitionProblem("DYNAMICS");
579  CHKERR prb_mng_ptr->partitionFiniteElements("DYNAMICS");
580  }
581  CHKERR prb_mng_ptr->partitionGhostDofs("DYNAMICS");
582 
583  Vec F;
584  CHKERR m_field.getInterface<VecManager>()->vecCreateGhost("DYNAMICS", COL,
585  &F);
586  Vec D;
587  CHKERR VecDuplicate(F, &D);
588 
589  // create tS
590  TS ts;
591  CHKERR TSCreate(PETSC_COMM_WORLD, &ts);
592  CHKERR TSSetType(ts, TSBEULER);
593 
594  // shell matrix
595  ConvectiveMassElement::MatShellCtx *shellAij_ctx =
596  new ConvectiveMassElement::MatShellCtx();
597  CHKERR m_field.getInterface<MatrixManager>()
598  ->createMPIAIJWithArrays<PetscGlobalIdx_mi_tag>("Kuu",
599  &shellAij_ctx->K);
600  CHKERR MatDuplicate(shellAij_ctx->K, MAT_DO_NOT_COPY_VALUES,
601  &shellAij_ctx->M);
602  CHKERR shellAij_ctx->iNit();
603  CHKERR m_field.getInterface<VecManager>()->vecScatterCreate(
604  D, "DYNAMICS", COL, shellAij_ctx->u, "Kuu", COL,
605  &shellAij_ctx->scatterU);
606  CHKERR m_field.getInterface<VecManager>()->vecScatterCreate(
607  D, "DYNAMICS", "VELOCITY", COL, shellAij_ctx->v, "Kuu", "DISPLACEMENT",
608  COL, &shellAij_ctx->scatterV);
609  Mat shell_Aij;
610  const Problem *problem_ptr;
611  CHKERR m_field.get_problem("DYNAMICS", &problem_ptr);
612  CHKERR MatCreateShell(
613  PETSC_COMM_WORLD, problem_ptr->getNbLocalDofsRow(),
614  problem_ptr->getNbLocalDofsCol(), problem_ptr->getNbDofsRow(),
615  problem_ptr->getNbDofsRow(), (void *)shellAij_ctx, &shell_Aij);
616  CHKERR MatShellSetOperation(shell_Aij, MATOP_MULT,
617  (void (*)(void))ConvectiveMassElement::MultOpA);
618  CHKERR MatShellSetOperation(
619  shell_Aij, MATOP_ZERO_ENTRIES,
620  (void (*)(void))ConvectiveMassElement::ZeroEntriesOp);
621  // blocked problem
622  ConvectiveMassElement::ShellMatrixElement shell_matrix_element(m_field);
623  DirichletDisplacementBc shell_dirichlet_bc(
624  m_field, "DISPLACEMENT", shellAij_ctx->barK, PETSC_NULL, PETSC_NULL);
625  DirichletDisplacementBc my_dirichlet_bc(m_field, "DISPLACEMENT", PETSC_NULL,
626  D, F);
627  shell_matrix_element.problemName = "Kuu";
628  shell_matrix_element.shellMatCtx = shellAij_ctx;
629  shell_matrix_element.DirichletBcPtr = &shell_dirichlet_bc;
630  shell_matrix_element.loopK.push_back(
631  ConvectiveMassElement::ShellMatrixElement::PairNameFEMethodPtr(
632  "ELASTIC", &elastic.getLoopFeLhs()));
633  // damper
634  shell_matrix_element.loopK.push_back(
635  ConvectiveMassElement::ShellMatrixElement::PairNameFEMethodPtr(
636  "ELASTIC", &damper.feLhs));
637 
638  CHKERR inertia.addHOOpsVol();
639  CHKERR inertia.setShellMatrixMassOperators("VELOCITY", "DISPLACEMENT",
640  "MESH_NODE_POSITIONS", linear);
641  // element name "ELASTIC" is used, therefore M matrix is assembled as K
642  // matrix. This is added to M is shell matrix. M matrix is a derivative of
643  // inertia forces over spatial velocities
644  shell_matrix_element.loopM.push_back(
645  ConvectiveMassElement::ShellMatrixElement::PairNameFEMethodPtr(
646  "ELASTIC", &inertia.getLoopFeMassLhs()));
647  // this calculate derivatives of inertia forces over spatial positions and
648  // add this to shell K matrix
649  shell_matrix_element.loopAuxM.push_back(
650  ConvectiveMassElement::ShellMatrixElement::PairNameFEMethodPtr(
651  "ELASTIC", &inertia.getLoopFeMassAuxLhs()));
652 
653  // Element to calculate shell matrix residual
654  ConvectiveMassElement::ShellResidualElement shell_matrix_residual(m_field);
655  shell_matrix_residual.shellMatCtx = shellAij_ctx;
656 
657  // surface pressure
658  boost::ptr_map<std::string, NeumannForcesSurface> surface_forces;
659  {
660  string fe_name_str = "FORCE_FE";
661  surface_forces.insert(fe_name_str, new NeumannForcesSurface(m_field));
662  CHKERR addHOOpsFace3D("MESH_NODE_POSITIONS",
663  surface_forces.at(fe_name_str).getLoopFe(), false,
664  false);
665  for (_IT_CUBITMESHSETS_BY_BCDATA_TYPE_FOR_LOOP_(m_field,
666  NODESET | FORCESET, it)) {
667  CHKERR surface_forces.at(fe_name_str)
668  .addForce("DISPLACEMENT", PETSC_NULL, it->getMeshsetId(), true);
669  surface_forces.at(fe_name_str)
670  .methodsOp.push_back(new TimeForceScale());
671  }
672  }
673 
674  boost::ptr_map<std::string, NeumannForcesSurface> surface_pressure;
675  {
676  string fe_name_str = "PRESSURE_FE";
677  surface_pressure.insert(fe_name_str, new NeumannForcesSurface(m_field));
678  CHKERR addHOOpsFace3D("MESH_NODE_POSITIONS",
679  surface_pressure.at(fe_name_str).getLoopFe(), false,
680  false);
681  for (_IT_CUBITMESHSETS_BY_BCDATA_TYPE_FOR_LOOP_(
682  m_field, SIDESET | PRESSURESET, it)) {
683  CHKERR surface_pressure.at(fe_name_str)
684  .addPressure("DISPLACEMENT", PETSC_NULL, it->getMeshsetId(), true);
685  surface_pressure.at(fe_name_str)
686  .methodsOp.push_back(new TimeForceScale());
687  }
688  }
689 
690  // edge forces
691  boost::ptr_map<std::string, EdgeForce> edge_forces;
692  {
693  string fe_name_str = "FORCE_FE";
694  edge_forces.insert(fe_name_str, new EdgeForce(m_field));
695  for (_IT_CUBITMESHSETS_BY_BCDATA_TYPE_FOR_LOOP_(m_field,
696  NODESET | FORCESET, it)) {
697  CHKERR edge_forces.at(fe_name_str)
698  .addForce("DISPLACEMENT", PETSC_NULL, it->getMeshsetId(), true);
699  edge_forces.at(fe_name_str).methodsOp.push_back(new TimeForceScale());
700  }
701  }
702 
703  // nodal forces
704  boost::ptr_map<std::string, NodalForce> nodal_forces;
705  {
706  string fe_name_str = "FORCE_FE";
707  nodal_forces.insert(fe_name_str, new NodalForce(m_field));
708  for (_IT_CUBITMESHSETS_BY_BCDATA_TYPE_FOR_LOOP_(m_field,
709  NODESET | FORCESET, it)) {
710  CHKERR nodal_forces.at(fe_name_str)
711  .addForce("DISPLACEMENT", F, it->getMeshsetId(), true);
712  nodal_forces.at(fe_name_str).methodsOp.push_back(new TimeForceScale());
713  }
714  }
715 
716  MonitorRestart monitor_restart(m_field, ts);
717  ConvectiveMassElement::UpdateAndControl update_and_control(
718  m_field, ts, "VELOCITY", "DISPLACEMENT");
719 
720  // TS
721  TsCtx ts_ctx(m_field, "DYNAMICS");
722 
723  // right hand side
724  // preprocess
725  ts_ctx.getPreProcessIFunction().push_back(&update_and_control);
726  ts_ctx.getPreProcessIFunction().push_back(&my_dirichlet_bc);
727 
728  // fe looops
729  auto &loops_to_do_Rhs = ts_ctx.getLoopsIFunction();
730 
731  auto add_static_rhs = [&](auto &loops_to_do_Rhs) {
732  MoFEMFunctionBegin;
733  loops_to_do_Rhs.push_back(
734  PairNameFEMethodPtr("ELASTIC", &elastic.getLoopFeRhs()));
735  for (auto fit = surface_forces.begin(); fit != surface_forces.end();
736  fit++) {
737  loops_to_do_Rhs.push_back(
738  PairNameFEMethodPtr(fit->first, &fit->second->getLoopFe()));
739  }
740  for (auto fit = surface_pressure.begin(); fit != surface_pressure.end();
741  fit++) {
742  loops_to_do_Rhs.push_back(
743  PairNameFEMethodPtr(fit->first, &fit->second->getLoopFe()));
744  }
745  for (auto fit = edge_forces.begin(); fit != edge_forces.end(); fit++) {
746  loops_to_do_Rhs.push_back(
747  PairNameFEMethodPtr(fit->first, &fit->second->getLoopFe()));
748  }
749  for (auto fit = nodal_forces.begin(); fit != nodal_forces.end(); fit++) {
750  loops_to_do_Rhs.push_back(
751  PairNameFEMethodPtr(fit->first, &fit->second->getLoopFe()));
752  }
753  loops_to_do_Rhs.push_back(PairNameFEMethodPtr(
754  "FLUID_PRESSURE_FE", &fluid_pressure_fe.getLoopFe()));
755  MoFEMFunctionReturn(0);
756  };
757 
758  CHKERR add_static_rhs(loops_to_do_Rhs);
759 
760  loops_to_do_Rhs.push_back(PairNameFEMethodPtr("DAMPER", &damper.feRhs));
761  loops_to_do_Rhs.push_back(
762  PairNameFEMethodPtr("MASS_ELEMENT", &inertia.getLoopFeMassRhs()));
763 
764  // preporcess
765  // calculate residual for velocities
766  ts_ctx.getPreProcessIFunction().push_back(&shell_matrix_residual);
767  // postprocess
768  ts_ctx.getPostProcessIFunction().push_back(&my_dirichlet_bc);
769 
770  // left hand side
771  // preprocess
772  ts_ctx.getPreProcessIJacobian().push_back(&update_and_control);
773  ts_ctx.getPreProcessIJacobian().push_back(&shell_matrix_element);
774  ts_ctx.getPostProcessIJacobian().push_back(&update_and_control);
775  // monitor
776  TsCtx::FEMethodsSequence &loopsMonitor =
777  ts_ctx.getLoopsMonitor();
778  loopsMonitor.push_back(
779  TsCtx::PairNameFEMethodPtr("MASS_ELEMENT", &post_proc));
780  loopsMonitor.push_back(
781  TsCtx::PairNameFEMethodPtr("MASS_ELEMENT", &monitor_restart));
782 
783  CHKERR TSSetIFunction(ts, F, TsSetIFunction, &ts_ctx);
784  CHKERR TSSetIJacobian(ts, shell_Aij, shell_Aij, TsSetIJacobian, &ts_ctx);
785 
786  CHKERR TSMonitorSet(ts, TsMonitorSet, &ts_ctx, PETSC_NULL);
787 
788  double ftime = 1;
789  CHKERR TSSetDuration(ts, PETSC_DEFAULT, ftime);
790  CHKERR TSSetSolution(ts, D);
791  CHKERR TSSetFromOptions(ts);
792  // shell matrix pre-conditioner
793  SNES snes;
794  CHKERR TSGetSNES(ts, &snes);
795  // CHKERR SNESSetFromOptions(snes);
796  KSP ksp;
797  CHKERR SNESGetKSP(snes, &ksp);
798  CHKERR KSPSetFromOptions(ksp);
799  PC pc;
800  CHKERR KSPGetPC(ksp, &pc);
801  CHKERR PCSetType(pc, PCSHELL);
802  ConvectiveMassElement::PCShellCtx pc_shell_ctx(shell_Aij);
803  CHKERR PCShellSetContext(pc, (void *)&pc_shell_ctx);
804  CHKERR PCShellSetApply(pc, ConvectiveMassElement::PCShellApplyOp);
805  CHKERR PCShellSetSetUp(pc, ConvectiveMassElement::PCShellSetUpOp);
806  CHKERR PCShellSetDestroy(pc, ConvectiveMassElement::PCShellDestroy);
807 
808  CHKERR VecZeroEntries(D);
809  CHKERR VecGhostUpdateBegin(D, INSERT_VALUES, SCATTER_FORWARD);
810  CHKERR VecGhostUpdateEnd(D, INSERT_VALUES, SCATTER_FORWARD);
811  CHKERR m_field.getInterface<VecManager>()->setGlobalGhostVector(
812  "DYNAMICS", COL, D, INSERT_VALUES, SCATTER_REVERSE);
813 
814  // Solve problem at time Zero
815  if (is_solve_at_time_zero) {
816 
817  Mat Aij = shellAij_ctx->K;
818  Vec F;
819  CHKERR m_field.getInterface<VecManager>()->vecCreateGhost("Kuu", COL, &F);
820  Vec D;
821  CHKERR VecDuplicate(F, &D);
822 
823  // Set vector for Kuu problem from the mesh data
824  CHKERR m_field.getInterface<VecManager>()->setLocalGhostVector(
825  "Kuu", COL, D, INSERT_VALUES, SCATTER_FORWARD);
826  CHKERR VecGhostUpdateBegin(D, INSERT_VALUES, SCATTER_FORWARD);
827  CHKERR VecGhostUpdateEnd(D, INSERT_VALUES, SCATTER_FORWARD);
828 
829  SnesCtx snes_ctx(m_field, "Kuu");
830 
831  SNES snes;
832  CHKERR SNESCreate(PETSC_COMM_WORLD, &snes);
833  CHKERR SNESSetApplicationContext(snes, &snes_ctx);
834  CHKERR SNESSetFunction(snes, F, SnesRhs, &snes_ctx);
835  CHKERR SNESSetJacobian(snes, Aij, Aij, SnesMat, &snes_ctx);
836  CHKERR SNESSetFromOptions(snes);
837 
838  DirichletDisplacementBc my_dirichlet_bc(m_field, "DISPLACEMENT",
839  PETSC_NULL, D, F);
840 
841  SnesCtx::FEMethodsSequence &loops_to_do_Rhs =
842  snes_ctx.getComputeRhs();
843  snes_ctx.getPreProcComputeRhs().push_back(&my_dirichlet_bc);
844  fluid_pressure_fe.getLoopFe().ts_t = 0;
845  CHKERR add_static_rhs(loops_to_do_Rhs);
846  snes_ctx.getPostProcComputeRhs().push_back(&my_dirichlet_bc);
847 
848  SnesCtx::FEMethodsSequence &loops_to_do_Mat =
849  snes_ctx.getSetOperators();
850  snes_ctx.getPreProcSetOperators().push_back(&my_dirichlet_bc);
851  loops_to_do_Mat.push_back(
852  SnesCtx::PairNameFEMethodPtr("ELASTIC", &elastic.getLoopFeLhs()));
853  snes_ctx.getPostProcSetOperators().push_back(&my_dirichlet_bc);
854 
855  CHKERR m_field.getInterface<FieldBlas>()->fieldScale(0, "VELOCITY");
856  CHKERR m_field.getInterface<FieldBlas>()->fieldScale(0,
857  "DOT_DISPLACEMENT");
858  CHKERR m_field.getInterface<FieldBlas>()->fieldScale(0, "DOT_VELOCITY");
859 
860  CHKERR m_field.getInterface<VecManager>()->setLocalGhostVector(
861  "Kuu", COL, D, INSERT_VALUES, SCATTER_FORWARD);
862 
863  CHKERR SNESSolve(snes, PETSC_NULL, D);
864  int its;
865  CHKERR SNESGetIterationNumber(snes, &its);
866  MOFEM_LOG_C("DYNAMIC", Sev::inform, "number of Newton iterations = %d\n",
867  its);
868 
869  // Set data on the mesh
870  CHKERR m_field.getInterface<VecManager>()->setGlobalGhostVector(
871  "Kuu", COL, D, INSERT_VALUES, SCATTER_REVERSE);
872 
873  CHKERR VecDestroy(&F);
874  CHKERR VecDestroy(&D);
875  CHKERR SNESDestroy(&snes);
876  }
877 
878  if (is_solve_at_time_zero) {
879  CHKERR m_field.getInterface<VecManager>()->setLocalGhostVector(
880  "DYNAMICS", COL, D, INSERT_VALUES, SCATTER_FORWARD);
881  CHKERR VecGhostUpdateBegin(D, INSERT_VALUES, SCATTER_FORWARD);
882  CHKERR VecGhostUpdateEnd(D, INSERT_VALUES, SCATTER_FORWARD);
883  CHKERR TSSetSolution(ts, D);
884  }
885 
886 #if PETSC_VERSION_GE(3, 7, 0)
887  CHKERR TSSetExactFinalTime(ts, TS_EXACTFINALTIME_STEPOVER);
888 #endif
889  CHKERR TSSolve(ts, D);
890  CHKERR TSGetTime(ts, &ftime);
891 
892  PetscInt steps, snesfails, rejects, nonlinits, linits;
893  CHKERR TSGetTimeStepNumber(ts, &steps);
894  CHKERR TSGetSNESFailures(ts, &snesfails);
895  CHKERR TSGetStepRejections(ts, &rejects);
896  CHKERR TSGetSNESIterations(ts, &nonlinits);
897  CHKERR TSGetKSPIterations(ts, &linits);
898  MOFEM_LOG_C("DYNAMIC", Sev::inform,
899  "steps %d (%d rejected, %D SNES fails), ftime %g, nonlinits "
900  "%d, linits %D\n",
901  steps, rejects, snesfails, ftime, nonlinits, linits);
902  CHKERR TSDestroy(&ts);
903 
904  CHKERR VecDestroy(&F);
905  CHKERR VecDestroy(&D);
906  CHKERR MatDestroy(&shellAij_ctx->K);
907  CHKERR MatDestroy(&shellAij_ctx->M);
908  CHKERR VecScatterDestroy(&shellAij_ctx->scatterU);
909  CHKERR VecScatterDestroy(&shellAij_ctx->scatterV);
910  CHKERR MatDestroy(&shell_Aij);
911  delete shellAij_ctx;
912  }
913  CATCH_ERRORS;
914 
915  MoFEM::Core::Finalize();
916 
917  return 0;
918 }

Variable Documentation

◆ help

char help[] = "...\n\n"
static
Examples
nonlinear_dynamics.cpp.

Definition at line 28 of file nonlinear_dynamics.cpp.

MoFEM::UnknownInterface::getInterface
MoFEMErrorCode getInterface(IFACE *&iface) const
Get interface reference to pointer of interface.
Definition: UnknownInterface.hpp:93
MoFEM::addHOOpsFace3D
MoFEMErrorCode addHOOpsFace3D(const std::string field, E &e, bool hcurl, bool hdiv)
Definition: HODataOperators.hpp:699
SIDESET
@ SIDESET
Definition: definitions.h:160
MYPCOMM_INDEX
#define MYPCOMM_INDEX
default communicator number PCOMM
Definition: definitions.h:228
MetaNeumannForces::addNeumannBCElements
static MoFEMErrorCode addNeumannBCElements(MoFEM::Interface &m_field, const std::string field_name, const std::string mesh_nodals_positions="MESH_NODE_POSITIONS", Range *intersect_ptr=NULL)
Declare finite element.
Definition: SurfacePressure.cpp:1974
MoFEM::CoreInterface::loop_dofs
virtual MoFEMErrorCode loop_dofs(const Problem *problem_ptr, const std::string &field_name, RowColData rc, DofMethod &method, int lower_rank, int upper_rank, int verb=DEFAULT_VERBOSITY)=0
Make a loop over dofs.
MoFEM::ProblemsManager::buildProblem
MoFEMErrorCode buildProblem(const std::string name, const bool square_matrix, int verb=VERBOSE)
build problem data structures
Definition: ProblemsManager.cpp:87
KelvinVoigtDamper::CommonData::spatialPositionNameDot
string spatialPositionNameDot
Definition: KelvinVoigtDamper.hpp:172
MoFEM::CoreTmp< 0 >
Core (interface) class.
Definition: Core.hpp:82
H1
@ H1
continuous field
Definition: definitions.h:85
EdgeForce
Force on edges and lines.
Definition: EdgeForce.hpp:13
ConvectiveMassElement::MatShellCtx::iNit
MoFEMErrorCode iNit()
Definition: ConvectiveMassElement.cpp:2352
EntityHandle
MoFEM::ProblemsManager
Problem manager is used to build and partition problems.
Definition: ProblemsManager.hpp:21
MetaNodalForces::addElement
static MoFEMErrorCode addElement(MoFEM::Interface &m_field, const std::string field_name, Range *intersect_ptr=NULL)
Add element taking information from NODESET.
Definition: NodalForce.hpp:92
MoFEM::addHOOpsVol
MoFEMErrorCode addHOOpsVol(const std::string field, E &e, bool h1, bool hcurl, bool hdiv, bool l2)
Definition: HODataOperators.hpp:674
PRESSURESET
@ PRESSURESET
Definition: definitions.h:165
MoFEM::TsSetIFunction
PetscErrorCode TsSetIFunction(TS ts, PetscReal t, Vec u, Vec u_t, Vec F, void *ctx)
Set IFunction for TS solver.
Definition: TsCtx.cpp:56
MoFEM::CoreInterface::modify_finite_element_add_field_row
virtual MoFEMErrorCode modify_finite_element_add_field_row(const std::string &fe_name, const std::string name_row)=0
set field row which finite element use
NOBASE
@ NOBASE
Definition: definitions.h:59
NonlinearElasticElement
structure grouping operators and data used for calculation of nonlinear elastic element
Definition: HookeElement.hpp:27
MoFEM::TsCtx::getLoopsMonitor
FEMethodsSequence & getLoopsMonitor()
Get the loops to do Monitor object.
Definition: TsCtx.hpp:98
KelvinVoigtDamper
Implementation of Kelvin Voigt Damper.
Definition: KelvinVoigtDamper.hpp:20
MoFEM::TsCtx::getLoopsIFunction
FEMethodsSequence & getLoopsIFunction()
Get the loops to do IFunction object.
Definition: TsCtx.hpp:59
_IT_CUBITMESHSETS_BY_BCDATA_TYPE_FOR_LOOP_
#define _IT_CUBITMESHSETS_BY_BCDATA_TYPE_FOR_LOOP_(MESHSET_MANAGER, CUBITBCTYPE, IT)
Iterator that loops over a specific Cubit MeshSet in a moFEM field.
Definition: MeshsetsManager.hpp:49
MoFEM::CoreInterface::get_problem
virtual const Problem * get_problem(const std::string problem_name) const =0
Get the problem object.
NodalForce
Force applied to nodes.
Definition: NodalForce.hpp:13
ConvectiveMassElement::MatShellCtx::scatterU
VecScatter scatterU
Definition: ConvectiveMassElement.hpp:505
MoFEM::TsCtx::getPostProcessIJacobian
BasicMethodsSequence & getPostProcessIJacobian()
Get the postProcess to do IJacobian object.
Definition: TsCtx.hpp:128
MoFEM::Projection10NodeCoordsOnField
Projection of edge entities with one mid-node on hierarchical basis.
Definition: Projection10NodeCoordsOnField.hpp:24
MoFEM::CoreTmp< 0 >::Finalize
static MoFEMErrorCode Finalize()
Checks for options to be called at the conclusion of the program.
Definition: Core.cpp:112
ElasticMaterials
Manage setting parameters and constitutive equations for nonlinear/linear elastic materials.
Definition: ElasticMaterials.hpp:24
MoFEM::TsCtx::FEMethodsSequence
MoFEM::FEMethodsSequence FEMethodsSequence
Definition: TsCtx.hpp:26
MoFEM::SnesCtx::FEMethodsSequence
MoFEM::FEMethodsSequence FEMethodsSequence
Definition: SnesCtx.hpp:27
KelvinVoigtDamper::ConstitutiveEquation< adouble >
ts_ctx
MoFEM::TsCtx * ts_ctx
Definition: level_set.cpp:1932
DirichletDisplacementBc
Set Dirichlet boundary conditions on displacements.
Definition: DirichletBC.hpp:57
MoFEM::CoreInterface::add_ents_to_field_by_type
virtual MoFEMErrorCode add_ents_to_field_by_type(const Range &ents, const EntityType type, const std::string &name, int verb=DEFAULT_VERBOSITY)=0
Add entities to field meshset.
MoFEM::DeprecatedCoreInterface
Deprecated interface functions.
Definition: DeprecatedCoreInterface.hpp:16
MoFEM::Interface
DeprecatedCoreInterface Interface
Definition: Interface.hpp:2010
MoFEM::TsMonitorSet
PetscErrorCode TsMonitorSet(TS ts, PetscInt step, PetscReal t, Vec u, void *ctx)
Set monitor for TS solver.
Definition: TsCtx.cpp:259
ConvectiveMassElement
structure grouping operators and data used for calculation of mass (convective) element
Definition: ConvectiveMassElement.hpp:28
NODESET
@ NODESET
Definition: definitions.h:159
MoFEM::CoreInterface::add_ents_to_finite_element_by_type
virtual MoFEMErrorCode add_ents_to_finite_element_by_type(const EntityHandle entities, const EntityType type, const std::string &name, const bool recursive=true)=0
add entities to finite element
ConvectiveMassElement::MatShellCtx::u
Vec u
Definition: ConvectiveMassElement.hpp:513
CHKERR
#define CHKERR
Inline error check.
Definition: definitions.h:548
ConvectiveMassElement::PCShellSetUpOp
static MoFEMErrorCode PCShellSetUpOp(PC pc)
Definition: ConvectiveMassElement.hpp:618
MoFEM::CoreInterface::add_finite_element
virtual MoFEMErrorCode add_finite_element(const std::string &fe_name, enum MoFEMTypes bh=MF_EXCL, int verb=DEFAULT_VERBOSITY)=0
add finite element
MoFEM::CoreInterface::modify_finite_element_add_field_col
virtual MoFEMErrorCode modify_finite_element_add_field_col(const std::string &fe_name, const std::string name_row)=0
set field col which finite element use
FORCESET
@ FORCESET
Definition: definitions.h:164
TimeForceScale
Force scale operator for reading two columns.
Definition: TimeForceScale.hpp:18
MoFEM::CoreInterface::build_finite_elements
virtual MoFEMErrorCode build_finite_elements(int verb=DEFAULT_VERBOSITY)=0
Build finite elements.
MOFEM_LOG_C
#define MOFEM_LOG_C(channel, severity, format,...)
Definition: LogManager.hpp:311
MoFEM::TsCtx::getPreProcessIJacobian
BasicMethodsSequence & getPreProcessIJacobian()
Get the preProcess to do IJacobian object.
Definition: TsCtx.hpp:121
ConvectiveMassElement::PCShellDestroy
static MoFEMErrorCode PCShellDestroy(PC pc)
Definition: ConvectiveMassElement.hpp:633
bit
auto bit
set bit
Definition: hanging_node_approx.cpp:75
MoFEM::Problem::getNbDofsRow
DofIdx getNbDofsRow() const
Definition: ProblemsMultiIndices.hpp:376
FluidPressure
Fluid pressure forces.
Definition: FluidPressure.hpp:20
MoFEM::PairNameFEMethodPtr
Definition: AuxPETSc.hpp:12
COL
@ COL
Definition: definitions.h:136
MoFEM::TsCtx
Interface for Time Stepping (TS) solver.
Definition: TsCtx.hpp:17
MoFEM::TsCtx::getPostProcessIFunction
BasicMethodsSequence & getPostProcessIFunction()
Get the postProcess to do IFunction object.
Definition: TsCtx.hpp:112
ConvectiveMassElement::PCShellCtx
Definition: ConvectiveMassElement.hpp:600
ConvectiveMassElement::MatShellCtx::M
Mat M
Definition: ConvectiveMassElement.hpp:504
ConvectiveMassElement::MatShellCtx::v
Vec v
Definition: ConvectiveMassElement.hpp:513
MoFEM::TsSetIJacobian
PetscErrorCode TsSetIJacobian(TS ts, PetscReal t, Vec u, Vec u_t, PetscReal a, Mat A, Mat B, void *ctx)
Set function evaluating jacobian in TS solver.
Definition: TsCtx.cpp:165
AINSWORTH_LOBATTO_BASE
@ AINSWORTH_LOBATTO_BASE
Definition: definitions.h:62
MoFEM::CoreInterface::check_field
virtual bool check_field(const std::string &name) const =0
check if field is in database
ConvectiveMassElement::ZeroEntriesOp
static MoFEMErrorCode ZeroEntriesOp(Mat A)
Definition: ConvectiveMassElement.hpp:589
ConvectiveMassElement::MatShellCtx::K
Mat K
Definition: ConvectiveMassElement.hpp:504
ConvectiveMassElement::PCShellApplyOp
static MoFEMErrorCode PCShellApplyOp(PC pc, Vec f, Vec x)
apply pre-conditioner for shell matrix
Definition: ConvectiveMassElement.hpp:671
MOFEM_LOG_TAG
#define MOFEM_LOG_TAG(channel, tag)
Tag channel.
Definition: LogManager.hpp:339
MoFEM::Problem::getNbLocalDofsRow
DofIdx getNbLocalDofsRow() const
Definition: ProblemsMultiIndices.hpp:378
MoFEM::CoreInterface::modify_finite_element_add_field_data
virtual MoFEMErrorCode modify_finite_element_add_field_data(const std::string &fe_name, const std::string name_field)=0
set finite element field data
MoFEM::ProblemsManager::partitionFiniteElements
MoFEMErrorCode partitionFiniteElements(const std::string name, bool part_from_moab=false, int low_proc=-1, int hi_proc=-1, int verb=VERBOSE)
partition finite elements
Definition: ProblemsManager.cpp:2167
MoFEM::CoreInterface::modify_problem_ref_level_add_bit
virtual MoFEMErrorCode modify_problem_ref_level_add_bit(const std::string &name_problem, const BitRefLevel &bit)=0
add ref level to problem
MoFEM::VecManager
Vector manager is used to create vectors \mofem_vectors.
Definition: VecManager.hpp:23
AINSWORTH_BERNSTEIN_BEZIER_BASE
@ AINSWORTH_BERNSTEIN_BEZIER_BASE
Definition: definitions.h:64
mesh_file_name
char mesh_file_name[255]
Definition: mesh_smoothing.cpp:22
MoFEM::TsCtx::getPreProcessIFunction
BasicMethodsSequence & getPreProcessIFunction()
Get the preProcess to do IFunction object.
Definition: TsCtx.hpp:105
MoFEM::MatrixManager
Matrix manager is used to build and partition problems.
Definition: MatrixManager.hpp:21
MetaEdgeForces::addElement
static MoFEMErrorCode addElement(MoFEM::Interface &m_field, const std::string field_name, Range *intersect_ptr=NULL)
Add element taking information from NODESET.
Definition: EdgeForce.hpp:62
ConvectiveMassElement::MatShellCtx
Definition: ConvectiveMassElement.hpp:502
MoFEM::SnesRhs
PetscErrorCode SnesRhs(SNES snes, Vec x, Vec f, void *ctx)
This is MoFEM implementation for the right hand side (residual vector) evaluation in SNES solver.
Definition: SnesCtx.cpp:27
MoFEM::CoreTmp< 0 >::Initialize
static MoFEMErrorCode Initialize(int *argc, char ***args, const char file[], const char help[])
Initializes the MoFEM database PETSc, MOAB and MPI.
Definition: Core.cpp:72
MF_ZERO
@ MF_ZERO
Definition: definitions.h:111
CATCH_ERRORS
#define CATCH_ERRORS
Catch errors.
Definition: definitions.h:385
MoFEM::Core
CoreTmp< 0 > Core
Definition: Core.hpp:1148
ConvectiveMassElement::UpdateAndControl
Set fields DOT_.
Definition: ConvectiveMassElement.hpp:434
MonitorRestart
Definition: nonlinear_dynamics.cpp:139
ConvectiveMassElement::MultOpA
static MoFEMErrorCode MultOpA(Mat A, Vec x, Vec f)
Mult operator for shell matrix.
Definition: ConvectiveMassElement.hpp:546
KelvinVoigtDamper::CommonData
Common data for nonlinear_elastic_elem model.
Definition: KelvinVoigtDamper.hpp:169
AINSWORTH_LEGENDRE_BASE
@ AINSWORTH_LEGENDRE_BASE
Ainsworth Cole (Legendre) approx. base .
Definition: definitions.h:60
EigenMatrix::Vec
const FTensor::Tensor2< T, Dim, Dim > Vec
Definition: MatrixFunction.hpp:66
ConvectiveMassElement::ShellResidualElement
Definition: ConvectiveMassElement.hpp:715
MoFEM::ProblemsManager::buildProblemOnDistributedMesh
MoFEMErrorCode buildProblemOnDistributedMesh(const std::string name, const bool square_matrix, int verb=VERBOSE)
build problem data structures, assuming that mesh is distributed (collective)
Definition: ProblemsManager.cpp:290
MoFEM::PetscOptionsGetString
PetscErrorCode PetscOptionsGetString(PetscOptions *, const char pre[], const char name[], char str[], size_t size, PetscBool *set)
Definition: DeprecatedPetsc.hpp:172
MoFEM::PetscOptionsGetEList
PetscErrorCode PetscOptionsGetEList(PetscOptions *, const char pre[], const char name[], const char *const *list, PetscInt next, PetscInt *value, PetscBool *set)
Definition: DeprecatedPetsc.hpp:203
MoFEM::CoreInterface::build_fields
virtual MoFEMErrorCode build_fields(int verb=DEFAULT_VERBOSITY)=0
ConvectiveMassElement::MatShellCtx::barK
Mat barK
Definition: ConvectiveMassElement.hpp:512
FieldApproximationBase
FieldApproximationBase
approximation base
Definition: definitions.h:58
MoFEM::Problem::getNbLocalDofsCol
DofIdx getNbLocalDofsCol() const
Definition: ProblemsMultiIndices.hpp:379
ReactionDiffusionEquation::D
const double D
diffusivity
Definition: reaction_diffusion.cpp:20
help
static char help[]
Definition: nonlinear_dynamics.cpp:28
MoFEM::BitRefManager
Managing BitRefLevels.
Definition: BitRefManager.hpp:21
MoFEM::CoreInterface::modify_problem_add_finite_element
virtual MoFEMErrorCode modify_problem_add_finite_element(const std::string name_problem, const std::string &fe_name)=0
add finite element to problem, this add entities assigned to finite element to a particular problem
MoFEM::Types::BitRefLevel
std::bitset< BITREFLEVEL_SIZE > BitRefLevel
Bit structure attached to each entity identifying to what mesh entity is attached.
Definition: Types.hpp:40
MoFEM::CoreInterface::build_adjacencies
virtual MoFEMErrorCode build_adjacencies(const Range &ents, int verb=DEFAULT_VERBOSITY)=0
build adjacencies
MoFEM::SnesCtx
Interface for nonlinear (SNES) solver.
Definition: SnesCtx.hpp:13
ConvectiveMassElement::MatShellCtx::scatterV
VecScatter scatterV
Definition: ConvectiveMassElement.hpp:505
MoFEM::Problem
keeps basic data about problem
Definition: ProblemsMultiIndices.hpp:54
KelvinVoigtDamper::CommonData::spatialPositionName
string spatialPositionName
Definition: KelvinVoigtDamper.hpp:171
MoFEM::CoreInterface::set_field_order
virtual MoFEMErrorCode set_field_order(const EntityHandle meshset, const EntityType type, const std::string &name, const ApproximationOrder order, int verb=DEFAULT_VERBOSITY)=0
Set order approximation of the entities in the field.
NeumannForcesSurface
Finite element and operators to apply force/pressures applied to surfaces.
Definition: SurfacePressure.hpp:14
MonitorPostProc
Definition: nonlinear_dynamics.cpp:30
MoFEM::SnesMat
PetscErrorCode SnesMat(SNES snes, Vec x, Mat A, Mat B, void *ctx)
This is MoFEM implementation for the left hand side (tangent matrix) evaluation in SNES solver.
Definition: SnesCtx.cpp:139
MoFEM::ProblemsManager::partitionGhostDofs
MoFEMErrorCode partitionGhostDofs(const std::string name, int verb=VERBOSE)
determine ghost nodes
Definition: ProblemsManager.cpp:2339
MoFEM::CoreInterface::add_problem
virtual MoFEMErrorCode add_problem(const std::string &name, enum MoFEMTypes bh=MF_EXCL, int verb=DEFAULT_VERBOSITY)=0
Add problem.
MoFEM::PetscOptionsGetInt
PetscErrorCode PetscOptionsGetInt(PetscOptions *, const char pre[], const char name[], PetscInt *ivalue, PetscBool *set)
Definition: DeprecatedPetsc.hpp:142
MoFEMFunctionReturn
#define MoFEMFunctionReturn(a)
Last executable line of each PETSc function used for error handling. Replaces return()
Definition: definitions.h:429
TimeAccelerogram
Definition: TimeForceScale.hpp:133
MoFEM::FieldBlas
Basic algebra on fields.
Definition: FieldBlas.hpp:21
MoFEM::CoreInterface::add_field
virtual MoFEMErrorCode add_field(const std::string name, const FieldSpace space, const FieldApproximationBase base, const FieldCoefficientsNumber nb_of_coefficients, const TagType tag_type=MB_TAG_SPARSE, const enum MoFEMTypes bh=MF_EXCL, int verb=DEFAULT_VERBOSITY)=0
Add field.
MoFEMFunctionBegin
#define MoFEMFunctionBegin
First executable line of each MoFEM function, used for error handling. Final line of MoFEM functions ...
Definition: definitions.h:359
MoFEM::ProblemsManager::partitionProblem
MoFEMErrorCode partitionProblem(const std::string name, int verb=VERBOSE)
partition problem dofs (collective)
Definition: ProblemsManager.cpp:1683
F
@ F
Definition: free_surface.cpp:394
MoFEM::PetscOptionsGetBool
PetscErrorCode PetscOptionsGetBool(PetscOptions *, const char pre[], const char name[], PetscBool *bval, PetscBool *set)
Definition: DeprecatedPetsc.hpp:182
KelvinVoigtDamper::BlockMaterialData
Dumper material parameters.
Definition: KelvinVoigtDamper.hpp:29
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